HHsearch alignment for GI: 254780486 and conserved domain: COG1982

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].
Probab=99.68  E-value=1.7e-14  Score=110.43  Aligned_cols=343  Identities=16%  Similarity=0.142  Sum_probs=190.2

Q ss_pred             HHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCHHHHHHHHHHH
Q ss_conf             99999999997598399928976898034465667798899999999998637868872244--3688589999999984
Q gi|254780486|r    8 FYEERLQKIKSKGRHRQLLRRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRL--LCGNYNQHLELEEEAA   85 (381)
Q Consensus         8 ~~~~~l~~~~~~g~~~~~~~~~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~~g~~~~~sr~--~~G~~~~~~~lE~~lA   85 (381)
T Consensus        11 ~f~~~l-~y~~~~~~sf~~PGHk~G~~-------f~ks-~f~~f~Gen~f-r~D~~~~~~~Ld~Ll~p~G~i~eAqe~aA   80 (557)
T COG1982          11 PFFKLL-KYVKEGNYSFHVPGHKGGAG-------FRKS-EFYDFFGENLF-RADVSEADGELDSLLDPEGPIKEAQELAA   80 (557)
T ss_pred             HHHHHH-HHHHCCCCCEECCCCCCCCC-------CCHH-HHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             168999-99717996312688778765-------4666-78887604454-21332265666554587753889999999


Q ss_pred             HHCCCCCEEEECCCC-HHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCEEE-----------CCCCHHHHHHHH
Q ss_conf             012888516741660-24565566631689710045420267752666408764030-----------568814789976
Q gi|254780486|r   86 DFFGFEKMLYFGSGY-AANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQAIAI-----------PHNNINSFAENI  153 (381)
Q Consensus        86 ~~~g~e~al~~~sG~-~An~~~i~~l~~~~d~ii~D~~~HaSi~~g~~ls~a~~~~f-----------~HnD~~~Le~~l  153 (381)
T Consensus        81 ~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~al  160 (557)
T COG1982          81 RVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGIIGGIPLETFKEAL  160 (557)
T ss_pred             HHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             98688862999778228999999860389998996587637888899874883278417778544653786989987999


Q ss_pred             HHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEHHCCCCCCCCCCCCCC
Q ss_conf             43100024786079714621576613468999998631360898613112223477764011000013465210013465
Q gi|254780486|r  154 NKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKA  233 (381)
Q Consensus       154 ~~~~~~~~~~~~~vv~egv~Sm~G~~apL~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~~~~~~~~iv~~TlsKa  233 (381)
T Consensus       161 ~~~~~~~---k~~vitnpTY--dGv~~n~~~i~~~~~~~~a~v~~deah~~~-~~~~~~l-~~~~~~~~~~~~tqS~HK~  233 (557)
T COG1982         161 LAHPDAE---KLAVITNPTY--DGVCYNLRKIVELLHHYGAWVLYDEAHPAH-FDFSPML-PESALNGGADFVTQSTHKL  233 (557)
T ss_pred             HHCHHHH---HEEEEECCCC--CEEEECHHHHHHHHHHCCCEEEHHHCCCCC-CCCCCCC-CCHHHHCCCEEEEEEHHHH
T ss_conf             8471304---0688964853--247605999999975318668886457743-3555557-4114545743898105442


Q ss_pred             CCC--EEEEEECCC-CCCC--CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHH---HHC
Q ss_conf             653--026752451-0010--000121100001357750257898878988627102---24789999999987---641
Q gi|254780486|r  234 LGS--SGALVGSNK-IIYD--YLINYAKPFIYTTSPSPILAVVACEALKLIKRKPAL---HKSLLQLINITDKI---ANK  302 (381)
Q Consensus       234 ~g~--~GG~i~~~~-~ii~--~l~~~~~~~ifst~l~P~~~aaa~aal~~l~~~~~~---~~~l~~~~~~~~~~---~~~  302 (381)
T Consensus       234 l~alSQaS~iHv~~~~~~~~~r~n-ea~~~h~STSPsY~l~ASlD~-Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~  311 (557)
T COG1982         234 LAALSQASMIHVKDGRAVNHERFN-EALMMHQSTSPSYPLMASLDV-ARMQEGNAGRELWQEVIDEAIDFRKALRRLINE  311 (557)
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             123436678750887657789999-999988067955899988999-998754334788888899999999999998876


Q ss_pred             CCCCC----C------C--------------CCEEEEE-E-CCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEC
Q ss_conf             79789----9------8--------------9728999-5-897999999999997791898622888888870399962
Q gi|254780486|r  303 KIGFS----S------Q--------------SHIQSIV-I-GDNKSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISI  356 (381)
Q Consensus       303 ~~g~~----~------~--------------s~I~~v~-~-gd~~~a~~~~~~L~~~Gi~v~~i~~PtVp~~~~rlRi~v  356 (381)
T Consensus       312 ~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~e~gii~e~~-----~d~~~lll~~~  386 (557)
T COG1982         312 IGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLREHGIIPEET-----GDYSNLLLFSP  386 (557)
T ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEC-----CCCEEEEEEEE
T ss_conf             4886402665557753322212234454203660799965778973999999999758814531-----77324678632


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q ss_conf             878999999999999999
Q gi|254780486|r  357 TLNVDEPTIVKLFDILPQ  374 (381)
Q Consensus       357 ~a~~t~edi~~~~~~l~~  374 (381)
T Consensus       387 ~~gk~~~lv~~L~~f~r~  404 (557)
T COG1982         387 GIGKWQTLVDRLLEFKRR  404 (557)
T ss_pred             CCCHHHHHHHHHHHHHHH
T ss_conf             410678999999999875