HHsearch alignment for GI: 254780486 and conserved domain: COG1982
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].
Probab=99.68 E-value=1.7e-14 Score=110.43 Aligned_cols=343 Identities=16% Similarity=0.142 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCHHHHHHHHHHH
Q ss_conf 99999999997598399928976898034465667798899999999998637868872244--3688589999999984
Q gi|254780486|r 8 FYEERLQKIKSKGRHRQLLRRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRL--LCGNYNQHLELEEEAA 85 (381)
Q Consensus 8 ~~~~~l~~~~~~g~~~~~~~~~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~~g~~~~~sr~--~~G~~~~~~~lE~~lA 85 (381)
T Consensus 11 ~f~~~l-~y~~~~~~sf~~PGHk~G~~-------f~ks-~f~~f~Gen~f-r~D~~~~~~~Ld~Ll~p~G~i~eAqe~aA 80 (557)
T COG1982 11 PFFKLL-KYVKEGNYSFHVPGHKGGAG-------FRKS-EFYDFFGENLF-RADVSEADGELDSLLDPEGPIKEAQELAA 80 (557)
T ss_pred HHHHHH-HHHHCCCCCEECCCCCCCCC-------CCHH-HHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 168999-99717996312688778765-------4666-78887604454-21332265666554587753889999999
Q ss_pred HHCCCCCEEEECCCC-HHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCEEE-----------CCCCHHHHHHHH
Q ss_conf 012888516741660-24565566631689710045420267752666408764030-----------568814789976
Q gi|254780486|r 86 DFFGFEKMLYFGSGY-AANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQAIAI-----------PHNNINSFAENI 153 (381)
Q Consensus 86 ~~~g~e~al~~~sG~-~An~~~i~~l~~~~d~ii~D~~~HaSi~~g~~ls~a~~~~f-----------~HnD~~~Le~~l 153 (381)
T Consensus 81 ~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~al 160 (557)
T COG1982 81 RVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGIIGGIPLETFKEAL 160 (557)
T ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 98688862999778228999999860389998996587637888899874883278417778544653786989987999
Q ss_pred HHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEHHCCCCCCCCCCCCCC
Q ss_conf 43100024786079714621576613468999998631360898613112223477764011000013465210013465
Q gi|254780486|r 154 NKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKA 233 (381)
Q Consensus 154 ~~~~~~~~~~~~~vv~egv~Sm~G~~apL~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~~~~~~~~iv~~TlsKa 233 (381)
T Consensus 161 ~~~~~~~---k~~vitnpTY--dGv~~n~~~i~~~~~~~~a~v~~deah~~~-~~~~~~l-~~~~~~~~~~~~tqS~HK~ 233 (557)
T COG1982 161 LAHPDAE---KLAVITNPTY--DGVCYNLRKIVELLHHYGAWVLYDEAHPAH-FDFSPML-PESALNGGADFVTQSTHKL 233 (557)
T ss_pred HHCHHHH---HEEEEECCCC--CEEEECHHHHHHHHHHCCCEEEHHHCCCCC-CCCCCCC-CCHHHHCCCEEEEEEHHHH
T ss_conf 8471304---0688964853--247605999999975318668886457743-3555557-4114545743898105442
Q ss_pred CCC--EEEEEECCC-CCCC--CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHH---HHC
Q ss_conf 653--026752451-0010--000121100001357750257898878988627102---24789999999987---641
Q gi|254780486|r 234 LGS--SGALVGSNK-IIYD--YLINYAKPFIYTTSPSPILAVVACEALKLIKRKPAL---HKSLLQLINITDKI---ANK 302 (381)
Q Consensus 234 ~g~--~GG~i~~~~-~ii~--~l~~~~~~~ifst~l~P~~~aaa~aal~~l~~~~~~---~~~l~~~~~~~~~~---~~~ 302 (381)
T Consensus 234 l~alSQaS~iHv~~~~~~~~~r~n-ea~~~h~STSPsY~l~ASlD~-Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~ 311 (557)
T COG1982 234 LAALSQASMIHVKDGRAVNHERFN-EALMMHQSTSPSYPLMASLDV-ARMQEGNAGRELWQEVIDEAIDFRKALRRLINE 311 (557)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 123436678750887657789999-999988067955899988999-998754334788888899999999999998876
Q ss_pred CCCCC----C------C--------------CCEEEEE-E-CCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEC
Q ss_conf 79789----9------8--------------9728999-5-897999999999997791898622888888870399962
Q gi|254780486|r 303 KIGFS----S------Q--------------SHIQSIV-I-GDNKSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISI 356 (381)
Q Consensus 303 ~~g~~----~------~--------------s~I~~v~-~-gd~~~a~~~~~~L~~~Gi~v~~i~~PtVp~~~~rlRi~v 356 (381)
T Consensus 312 ~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~e~gii~e~~-----~d~~~lll~~~ 386 (557)
T COG1982 312 IGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLREHGIIPEET-----GDYSNLLLFSP 386 (557)
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEC-----CCCEEEEEEEE
T ss_conf 4886402665557753322212234454203660799965778973999999999758814531-----77324678632
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 878999999999999999
Q gi|254780486|r 357 TLNVDEPTIVKLFDILPQ 374 (381)
Q Consensus 357 ~a~~t~edi~~~~~~l~~ 374 (381)
T Consensus 387 ~~gk~~~lv~~L~~f~r~ 404 (557)
T COG1982 387 GIGKWQTLVDRLLEFKRR 404 (557)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 410678999999999875