HHsearch alignment for GI: 254780486 and conserved domain: COG3033
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism].
Probab=98.99 E-value=1.7e-06 Score=60.59 Aligned_cols=354 Identities=16% Similarity=0.177 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHCCCEEEECCC-CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 78999999999975983999289-76898034465667798899999999998637868872244368858999999998
Q gi|254780486|r 6 MSFYEERLQKIKSKGRHRQLLRR-QDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEA 84 (381)
Q Consensus 6 ~~~~~~~l~~~~~~g~~~~~~~~-~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~~l 84 (381)
T Consensus 22 ~ttre~RE~al~~ag~N~F~l~Sedv~IDLLTDS-----GTgams~~qwaamm-~GDEAYagsrs~-------~~L~~av 88 (471)
T COG3033 22 RTTREYREEALKKAGYNPFLLDSEDVFIDLLTDS-----GTGAMTDKQWAAMM-RGDEAYAGSRSY-------YALADAV 88 (471)
T ss_pred CCCHHHHHHHHHHCCCCEEECCCCCEEEEEECCC-----CCCCCCHHHHHHHH-CCCHHHCCCCCH-------HHHHHHH
T ss_conf 0579999999997699805515564578853058-----86625389999885-253543155338-------9999999
Q ss_pred HHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCH-----HHHCCHH------HHHHHH--------HCCCC-CEEECCC
Q ss_conf 40128885167416602456556663168971004-----5420267------752666--------40876-4030568
Q gi|254780486|r 85 ADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVY-----DKLVHAS------IREGIN--------SGKAQ-AIAIPHN 144 (381)
Q Consensus 85 A~~~g~e~al~~~sG~~An~~~i~~l~~~~d~ii~-----D~~~HaS------i~~g~~--------ls~a~-~~~f~Hn 144 (381)
T Consensus 89 kdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd 168 (471)
T COG3033 89 KDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGN 168 (471)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98617346512557731777889998410320677410123453120226778754870212316655664556887786
Q ss_pred -CHHHHHHHHHHHHHCCCCCCCEE-EECCCCCCCC---CHHHHHHHHHHHHHCCEEEEECCCCCC-C--CCCCCCCEEEE
Q ss_conf -81478997643100024786079-7146215766---134689999986313608986131122-2--34777640110
Q gi|254780486|r 145 -NINSFAENINKWRKSGGKGFPWI-VVESIYSMDG---DKAPLDDLVKIANDYDGFIVVDEAHAT-G--VCGPLGKGLTH 216 (381)
Q Consensus 145 -D~~~Le~~l~~~~~~~~~~~~~v-v~egv~Sm~G---~~apL~~i~~l~~~y~~~LivDEah~~-G--v~G~~G~G~~~ 216 (381)
T Consensus 169 ~D~~kLe~lidevG~~---nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd 245 (471)
T COG3033 169 FDLEKLERLIDEVGAD---NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRD 245 (471)
T ss_pred CCHHHHHHHHHHHCCC---CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCC
T ss_conf 5799999999873714---5868999996266678712077699999999871995896445665420223424765554
Q ss_pred E---------HHCCCCCCCCCCCCC-CCCCEEEEEECCCC----CCCCCCC-----CC-CCEECCCCCCCCHHHHHHHHH
Q ss_conf 0---------001346521001346-56530267524510----0100001-----21-100001357750257898878
Q gi|254780486|r 217 I---------IEERNNVIVMHSCSK-ALGSSGALVGSNKI----IYDYLIN-----YA-KPFIYTTSPSPILAVVACEAL 276 (381)
Q Consensus 217 ~---------~~~~~~~iv~~TlsK-a~g~~GG~i~~~~~----ii~~l~~-----~~-~~~ifst~l~P~~~aaa~aal 276 (381)
T Consensus 246 ~sI~~IarEm~sY-aD~~~m-S~KKD~lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tY---Ggl~GrdmealAvGL 320 (471)
T COG3033 246 WSIEEIAREMYSY-ADGCTM-SAKKDGLVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTY---GGLAGRDMEALAVGL 320 (471)
T ss_pred CCHHHHHHHHHHH-HHHHEE-ECCCCCEECCCCEEEECCCCHHHHHHHHHHHEEEECCCCCC---CCCCCHHHHHHHHHH
T ss_conf 6099999999865-124302-02545242246578864750778999987665751266665---764423289999788
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCCC--CCCCCEEEEEEC--------CHHHHHHHHHHHH-HCCEEEEEE-----
Q ss_conf 988627102247899999999876417978--998972899958--------9799999999999-779189862-----
Q gi|254780486|r 277 KLIKRKPALHKSLLQLINITDKIANKKIGF--SSQSHIQSIVIG--------DNKSCLNIAKNLQ-KKGFDIRAI----- 340 (381)
Q Consensus 277 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~g~--~~~s~I~~v~~g--------d~~~a~~~~~~L~-~~Gi~v~~i----- 340 (381)
T Consensus 321 ~e~~~~~yl~~Rv~Qv~YL~~~l~~~GVpi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~ 400 (471)
T COG3033 321 REGVNFDYLAHRVAQVQYLADGLEEAGVPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSL 400 (471)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEHHHHCCCCCHHHCCHHHHHHHHHHHHCEEEEEEECEEC
T ss_conf 87427089999999999999888865973685278716996345636778824484778999999983823664201111
Q ss_pred -CCCCCCCCC----CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf -288888887----0399962-878999999999999999988738
Q gi|254780486|r 341 -RPPTVPINT----ARLRISI-TLNVDEPTIVKLFDILPQIISEGN 380 (381)
Q Consensus 341 -~~PtVp~~~----~rlRi~v-~a~~t~edi~~~~~~l~~v~~E~~ 380 (381)
T Consensus 401 ~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~~ 446 (471)
T COG3033 401 GRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENAE 446 (471)
T ss_pred CCCCCCCCCCCCCHHEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 5587764347871230467435111456679999999999985424