HHsearch alignment for GI: 254780486 and conserved domain: PRK04612
>PRK04612 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=100.00 E-value=1.4e-32 Score=223.20 Aligned_cols=338 Identities=16% Similarity=0.176 Sum_probs=223.9
Q ss_pred HHHHHHCCCEEEECCCCEEEECCC---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-
Q ss_conf 999997598399928976898034---4656677988999999999986378688722443688589999999984012-
Q gi|254780486|r 13 LQKIKSKGRHRQLLRRQDIWDFTS---HDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFF- 88 (381)
Q Consensus 13 l~~~~~~g~~~~~~~~~~~l~f~s---~dYLGl~~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~~lA~~~- 88 (381)
T Consensus 24 ivi~r~~G~~l~D~dG~~ylD~~sg~~~~~lGh-~hp~v~~Ai~~Q~~~l~~~~----~~~--~~~~~~~lae~L~~~~~ 96 (408)
T PRK04612 24 VVLERGQGSRVWDDQGREYLDLSSGIAVSGLGH-NDPDLVAALTEQAGKLWHTS----NVF--FSAPPLKLAEELVTASR 96 (408)
T ss_pred EEEEEEECCEEEECCCCEEEEECHHHHHHHHCC-CCHHHHHHHHHHHHHCCCCC----CCC--CCHHHHHHHHHHHHCCC
T ss_conf 169985639999698899999245077512258-98999999999986525766----752--26589999999972268
Q ss_pred CCCCEEEECCCCHHHHHHHHHHC------C---CCCCCCH-HHHCCHHHHHHHHHCCC------------CCEEECCCCH
Q ss_conf 88851674166024565566631------6---8971004-54202677526664087------------6403056881
Q gi|254780486|r 89 GFEKMLYFGSGYAANMAILSTLP------Q---ATDLIVY-DKLVHASIREGINSGKA------------QAIAIPHNNI 146 (381)
Q Consensus 89 g~e~al~~~sG~~An~~~i~~l~------~---~~d~ii~-D~~~HaSi~~g~~ls~a------------~~~~f~HnD~ 146 (381)
T Consensus 97 ~~~~v~f~~SGsEAvE~AlKlAr~y~~~~G~~~~k~~ii~~~~syHG~t~~als~t~~~~~~~~~~p~p~~~~~~~~~d~ 176 (408)
T PRK04612 97 FAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLASVTATAQPKYQEGYEPLPGGFRYVDFNDV 176 (408)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCH
T ss_conf 87669971874689999999999998732887777699998585259876742256784334688899885254366749
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEE-EEEHHCC
Q ss_conf 47899764310002478607971462157661346----899999863136089861311222347776401-1000013
Q gi|254780486|r 147 NSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAP----LDDLVKIANDYDGFIVVDEAHATGVCGPLGKGL-THIIEER 221 (381)
Q Consensus 147 ~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~ap----L~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~-~~~~~~~ 221 (381)
T Consensus 177 ~~le~~~~------~~~iAAvivEPi~g~gG~~~~~~~yl~~l~~lc~~~gillI~DEV~-TG-fGRtG~~fa~~~~~v~ 248 (408)
T PRK04612 177 EALEAAMA------GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQ-CG-MGRTGTLFAHWQEQVT 248 (408)
T ss_pred HHHHHHCC------CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC-CC-CCCCCCHHHHHHCCCC
T ss_conf 99997156------9978999997867888830689999999999997569469850122-47-8867620355512899
Q ss_pred CCCCCCCCCCCCCCCEE---EEEECCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 46521001346565302---675245100100001211000013577502578988789886271022478999999998
Q gi|254780486|r 222 NNVIVMHSCSKALGSSG---ALVGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQLINITDK 298 (381)
Q Consensus 222 ~~~iv~~TlsKa~g~~G---G~i~~~~~ii~~l~~~~~~~ifst~l~P~~~aaa~aal~~l~~~~~~~~~l~~~~~~~~~ 298 (381)
T Consensus 249 PDii---~~gKglg~-G~Pl~av~~~~~i~~~~~~~~h~~--T~~gnpla~aaala~L~~i~~~~-l~~~~~~~g~~l~~ 321 (408)
T PRK04612 249 PDIV---TLAKALGG-GFPIGAMLAGPKVAETMQFGAHGT--TFGGNPLAAAVARVALRKLASPQ-IAANVARQSAALRA 321 (408)
T ss_pred CCEE---EEEHHHCC-CCCEEEEEECHHHHHHCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_conf 9989---97232238-876289998688885146899788--88735999999999999998666-99999999999999
Q ss_pred -HHH--CCCC----CCCCCCEEEEEEC--CHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf -764--1797----8998972899958--979999999999977918986228888888703999628789999999999
Q gi|254780486|r 299 -IAN--KKIG----FSSQSHIQSIVIG--DNKSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLF 369 (381)
Q Consensus 299 -~~~--~~~g----~~~~s~I~~v~~g--d~~~a~~~~~~L~~~Gi~v~~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~ 369 (381)
T Consensus 322 ~L~~l~~~~~~i~~vRG~GLm~giel~~~~~~~~~~i~~~~~~~Gll~~~-------~g~~~irl~PPL~it~~eide~l 394 (408)
T PRK04612 322 GLEALNAEFGVFAQIRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQ-------AGPDVLRFVPALNLTDAELADGL 394 (408)
T ss_pred HHHHHHHCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEC-------CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 99998740798883220446999995478862699999999978919931-------79997999688338899999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998873
Q gi|254780486|r 370 DILPQIISEG 379 (381)
Q Consensus 370 ~~l~~v~~E~ 379 (381)
T Consensus 395 ~~l~~al~~~ 404 (408)
T PRK04612 395 ARLRLALAAY 404 (408)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999