HHsearch alignment for GI: 254780486 and conserved domain: PRK09331
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional.
Probab=99.92 E-value=2.9e-22 Score=158.93 Aligned_cols=332 Identities=15% Similarity=0.176 Sum_probs=211.6
Q ss_pred CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-----CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCH
Q ss_conf 89768980344656677988999999999986378688-----7224436885899999999840128885167416602
Q gi|254780486|r 27 RRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGS-----GGSRLLCGNYNQHLELEEEAADFFGFEKMLYFGSGYA 101 (381)
Q Consensus 27 ~~~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~~g~~~-----~~sr~~~G~~~~~~~lE~~lA~~~g~e~al~~~sG~~ 101 (381)
T Consensus 15 ~~~~~in~~piq~gg-----~lt~ea~ka~~-~~gdgysvcd~C~~~LD~i~~Ppi~~f~~~la~flg~D~~rlvnGar~ 88 (386)
T PRK09331 15 LEEEMINLDPIQRGG-----RLTPEARKALI-EYGDGYSVCDYCKGRLDKIEKPPIADFHEDLAKFLGMDEARVTPGARE 88 (386)
T ss_pred HHHCCCCCCHHHHCC-----CCCHHHHHHHH-HHCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCCH
T ss_conf 023133567355269-----68999999999-974887366454110112559988999999999849963785288427
Q ss_pred HHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCEEECCC-------CHHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 4565566631689710045420267752666408764030568-------814789976431000247860797146215
Q gi|254780486|r 102 ANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQAIAIPHN-------NINSFAENINKWRKSGGKGFPWIVVESIYS 174 (381)
Q Consensus 102 An~~~i~~l~~~~d~ii~D~~~HaSi~~g~~ls~a~~~~f~Hn-------D~~~Le~~l~~~~~~~~~~~~~vv~egv~S 174 (381)
T Consensus 89 g~qAv~~a~c~~GD~VIl~rnaHyS~~~A~elaG~~~~~v~~~~~~~~~I~~~~~~~~Iee~~~e~gk~~aL~llt~pdy 168 (386)
T PRK09331 89 GKFAVMHALCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPDYRITPEAYAEKIEEVEDETGKPPALALLTHVDG 168 (386)
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 89999998636999798448405999999997598589936877723450800579999999986189855999968886
Q ss_pred CCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCEE--EEEECCCCCCCCCC
Q ss_conf 7661346899999863136089861311222347776401100001346521001346565302--67524510010000
Q gi|254780486|r 175 MDGDKAPLDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGSSG--ALVGSNKIIYDYLI 252 (381)
Q Consensus 175 m~G~~apL~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~~~~~~~~iv~~TlsKa~g~~G--G~i~~~~~ii~~l~ 252 (381)
T Consensus 169 ~yGn~~d~~~i~~iah~~~ip~lvdeA~~~~~~P~~a~-------~~GaD~~v~S~HK~~~s~t~sgvL~~~~e~~d~v~ 241 (386)
T PRK09331 169 NYGNLHDAKKIAKVAHQYGIPLLLNGAYTVGRMPVDGK-------ELGADFIVGSGHKSMAASAPSGVLATTEEYADKVF 241 (386)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHH-------HCCCCEEEEECCCCCCCCCCCEEEECCCCHHHHHH
T ss_conf 64454638999999987498189814433577897466-------63998898634544423463124430453015565
Q ss_pred CCCC-------CEECCCC-CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC------C-------CCC
Q ss_conf 1211-------0000135-77502578988789886271022478999999998764179789------9-------897
Q gi|254780486|r 253 NYAK-------PFIYTTS-PSPILAVVACEALKLIKRKPALHKSLLQLINITDKIANKKIGFS------S-------QSH 311 (381)
Q Consensus 253 ~~~~-------~~ifst~-l~P~~~aaa~aal~~l~~~~~~~~~l~~~~~~~~~~~~~~~g~~------~-------~s~ 311 (381)
T Consensus 242 R~s~~~~~Kev~mLgcTs~g~ps--y~LMASfd~vrerv~~~d~ev~~ar~~~~El~kIeG~~~lge~P~~hdl~~fdtt 319 (386)
T PRK09331 242 RTSKKFGVKEVELLGCTLRGAPL--VTLMASFPHVKERVKNWDEEVEKARWFVDELEKIEGFKQLGEKPRNHDLMRFETP 319 (386)
T ss_pred HCCCCCHHHHHHHHCCCCCCCHH--HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEECCC
T ss_conf 22643057899885363346408--9998065999999987789999999999998608765540657787774353376
Q ss_pred EEEEEEC-CHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 2899958-97999999999997791898622888888870399962878999999999999999988738
Q gi|254780486|r 312 IQSIVIG-DNKSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLFDILPQIISEGN 380 (381)
Q Consensus 312 I~~v~~g-d~~~a~~~~~~L~~~Gi~v~~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~~~l~~v~~E~~ 380 (381)
T Consensus 320 ~~~~ia~~~~~~Gy~l~~~Lk~r~I~ge~------sg~t~~lkl-~s~G~t~E~v~~li~A~keIaeky~ 382 (386)
T PRK09331 320 SFDEIAKKHKRRGFFLYEELKKRGIHGIK------PGLTKEFKL-STYGLTWEQVEYVADSFKEIAEKYG 382 (386)
T ss_pred CEEEEHHHCCCCCEEHHHHHHHCCCEEEE------CCCCEEEEE-EECCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 41222320486605679999767964995------571017878-8617878999999999999999828