HHsearch alignment for GI: 254780486 and conserved domain: TIGR00700
>TIGR00700 GABAtrnsam 4-aminobutyrate transaminase; InterPro: IPR004632 Eukaryotic 4-aminobutyrate aminotransferase (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between, in either set, the most similar enzyme with a distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families. This family describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. Escherichia coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=99.95 E-value=1.3e-25 Score=179.77 Aligned_cols=337 Identities=17% Similarity=0.243 Sum_probs=236.2
Q ss_pred HHHCCCEEEECCCCEEEECCCCCCCCCC------CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-
Q ss_conf 9975983999289768980344656677------988999999999986378688722443688589999999984012-
Q gi|254780486|r 16 IKSKGRHRQLLRRQDIWDFTSHDYLALS------SSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFF- 88 (381)
Q Consensus 16 ~~~~g~~~~~~~~~~~l~f~s~dYLGl~------~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~~lA~~~- 88 (381)
T Consensus 20 ~~aega~l~DvdGnr~IDfa~----gIavln~GhshP~vV~AV~~Q~~ef~Ht~f--~v~---pYe~Yv~lAEkln~iaP 90 (427)
T TIGR00700 20 AKAEGAILKDVDGNRYIDFAA----GIAVLNVGHSHPKVVEAVKRQVEEFTHTAF--QVV---PYESYVELAEKLNAIAP 90 (427)
T ss_pred EECCCCEEEECCCCEEEHHCC----CHHHHCCCCCCHHHHHHHHHHHHHHCCCCC--EEE---CCHHHHHHHHHHCCCCC
T ss_conf 755884787437752100011----023203689873589999999997438853--452---16258999999715788
Q ss_pred --CCCCEEEECCCCHHHHHHHH---HHCCCCCCCCHHHHCCHHHHHHHHHCCCCCEEECC--------------------
Q ss_conf --88851674166024565566---63168971004542026775266640876403056--------------------
Q gi|254780486|r 89 --GFEKMLYFGSGYAANMAILS---TLPQATDLIVYDKLVHASIREGINSGKAQAIAIPH-------------------- 143 (381)
Q Consensus 89 --g~e~al~~~sG~~An~~~i~---~l~~~~d~ii~D~~~HaSi~~g~~ls~a~~~~f~H-------------------- 143 (381)
T Consensus 91 gSg~kk~~ffnsGAEAVENAVKIAR~yTgrpgVvaF~~gfHGRTnmTM-alT~Kv~PYK~GFGPFapevY~aP~py~y~~ 169 (427)
T TIGR00700 91 GSGEKKAVFFNSGAEAVENAVKIARKYTGRPGVVAFDRGFHGRTNMTM-ALTAKVKPYKIGFGPFAPEVYRAPYPYDYRD 169 (427)
T ss_pred CCCCHHEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHH-HHHHCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 973100021115437888899999874589616863687466126788-7652278734578886745211688720024
Q ss_pred ---------CC--HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHH----HHHHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf ---------88--147899764310002478607971462157661346----899999863136089861311222347
Q gi|254780486|r 144 ---------NN--INSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAP----LDDLVKIANDYDGFIVVDEAHATGVCG 208 (381)
Q Consensus 144 ---------nD--~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~ap----L~~i~~l~~~y~~~LivDEah~~Gv~G 208 (381)
T Consensus 170 ~~~~~q~s~d~m~~~A~~~~f~~dkqv~a~~vAa~v~EPvQGEGGFivp~k~fv~a~~~~C~ehgiVfiADEvQt-G-FA 247 (427)
T TIGR00700 170 IALDKQESLDDMVLAAIEALFVADKQVEAENVAAVVIEPVQGEGGFIVPAKEFVAAVLDLCKEHGIVFIADEVQT-G-FA 247 (427)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCC-C-CC
T ss_conf 334422220038999999831210332501043789732247887333858899999997543875899725456-8-00
Q ss_pred CCCC-EEEEEHHC---CCCCCCCCCCCCCCCCEE---EEEECCCCCCCCCC--CCCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 7764-01100001---346521001346565302---67524510010000--121100001357750257898878988
Q gi|254780486|r 209 PLGK-GLTHIIEE---RNNVIVMHSCSKALGSSG---ALVGSNKIIYDYLI--NYAKPFIYTTSPSPILAVVACEALKLI 279 (381)
Q Consensus 209 ~~G~-G~~~~~~~---~~~~iv~~TlsKa~g~~G---G~i~~~~~ii~~l~--~~~~~~ifst~l~P~~~aaa~aal~~l 279 (381)
T Consensus 248 RTG~~FA~eH~~~dGl~PDLi---t~aKslA~-GlPLSgV~GrAeimdApapGgLGGTy----aGnPlacAAAlAvl~iI 319 (427)
T TIGR00700 248 RTGKLFAIEHYDDDGLKPDLI---TVAKSLAD-GLPLSGVVGRAEIMDAPAPGGLGGTY----AGNPLACAAALAVLDII 319 (427)
T ss_pred HHCCCEEEEECCCCCCCCCHH---HHHHHHHC-CCCCCHHHCCHHHCCCCCCCCCCCCC----CCCHHHHHHHHHHHHHH
T ss_conf 002112541006788875188---78667735-68621110441211688888887755----68879999999999863
Q ss_pred HHCCCHHHHHHHHHHHH-HHHHHCC-----C-CCCCCCCEEEEEEC--------CHHHHHHHHHHHHHCCEEEEEECCCC
Q ss_conf 62710224789999999-9876417-----9-78998972899958--------97999999999997791898622888
Q gi|254780486|r 280 KRKPALHKSLLQLINIT-DKIANKK-----I-GFSSQSHIQSIVIG--------DNKSCLNIAKNLQKKGFDIRAIRPPT 344 (381)
Q Consensus 280 ~~~~~~~~~l~~~~~~~-~~~~~~~-----~-g~~~~s~I~~v~~g--------d~~~a~~~~~~L~~~Gi~v~~i~~Pt 344 (381)
T Consensus 320 e~e-gL~ERa~qig~~~~d~l~~~k~~~p~IgdvRglGaMiAvE~vkdp~T~EPda~~a~~ia~~A~a~GlllL-----T 393 (427)
T TIGR00700 320 EEE-GLIERAEQIGKLVKDKLIELKEEVPAIGDVRGLGAMIAVELVKDPDTTEPDAALAEKIAAAALAAGLLLL-----T 393 (427)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHH-----H
T ss_conf 113-1247899987889888888876067211120263357888654887888317999999999975682212-----3
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8888703999628789999999999999999887
Q gi|254780486|r 345 VPINTARLRISITLNVDEPTIVKLFDILPQIISE 378 (381)
Q Consensus 345 Vp~~~~rlRi~v~a~~t~edi~~~~~~l~~v~~E 378 (381)
T Consensus 394 cG~~GNiIRfL~PLtI~D~ll~egl~Il~a~L~d 427 (427)
T TIGR00700 394 CGIYGNIIRFLTPLTISDELLDEGLDILEAALAD 427 (427)
T ss_pred CCHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 0301155543488654678898899999998529