HHsearch alignment for GI: 254780486 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=92.34 E-value=0.11 Score=30.60 Aligned_cols=48 Identities=31% Similarity=0.551 Sum_probs=35.4
Q ss_pred CCCCC-----------CCH-HHHHHHH-HHHHHCCE-EEEECCCCC-CCCCCCCCCEEEEEHHC
Q ss_conf 21576-----------613-4689999-98631360-898613112-22347776401100001
Q gi|254780486|r 172 IYSMD-----------GDK-APLDDLV-KIANDYDG-FIVVDEAHA-TGVCGPLGKGLTHIIEE 220 (381)
Q Consensus 172 v~Sm~-----------G~~-apL~~i~-~l~~~y~~-~LivDEah~-~Gv~G~~G~G~~~~~~~ 220 (381)
T Consensus 268 IY~LDmG~LLAGTKYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVG-AGATSGGsmDASNL 330 (774)
T TIGR02639 268 IYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVG-AGATSGGSMDASNL 330 (774)
T ss_pred EEEECHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEE-CCCCCCHHHHHHHH
T ss_conf 4540434564102454247899999999985289995466411010331-78787515524432