HHsearch alignment for GI: 254780486 and conserved domain: TIGR03392
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.89 E-value=6.5e-20 Score=144.26 Aligned_cols=345 Identities=14% Similarity=0.148 Sum_probs=205.8
Q ss_pred HHHHHCCCEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CHHHHHHHHHHHHHCCCC
Q ss_conf 999975983999289768980344656677988999999999986378688722443688--589999999984012888
Q gi|254780486|r 14 QKIKSKGRHRQLLRRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGN--YNQHLELEEEAADFFGFE 91 (381)
Q Consensus 14 ~~~~~~g~~~~~~~~~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~--~~~~~~lE~~lA~~~g~e 91 (381)
T Consensus 4 ~~~R~~FP--~l~~~~iYlDnAatt---~-~p~~V~~a~~~~~~~~~~n-~~~s~~~~~~~~~~~~e~aR~~iA~~lga~ 76 (398)
T TIGR03392 4 AQFRQQFP--ALQDGTVYLDSAATA---L-KPQAVIDATQQFYRLSSGT-VHRSQHQQAQSLTARYELARQQVARFLNAP 76 (398)
T ss_pred HHHHHHCC--CCCCCEEEEECCCCC---C-CCHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99986584--889990886786326---8-9899999999999863488-875143999999999999999999970959
Q ss_pred --CEEEE-CCCCHHHHHHHHHH----CCCCCCCCHHHHCCHHHHHH----HHHCCCCCEEECCC-----CHHHHHHHHHH
Q ss_conf --51674-16602456556663----16897100454202677526----66408764030568-----81478997643
Q gi|254780486|r 92 --KMLYF-GSGYAANMAILSTL----PQATDLIVYDKLVHASIREG----INSGKAQAIAIPHN-----NINSFAENINK 155 (381)
Q Consensus 92 --~al~~-~sG~~An~~~i~~l----~~~~d~ii~D~~~HaSi~~g----~~ls~a~~~~f~Hn-----D~~~Le~~l~~ 155 (381)
T Consensus 77 ~~~~Iifts~~Te~~n~~~~~~~~~~~~~gd~ii~s~~EH~s~~~pw~~~~~~~g~~v~~~~~~~~~~~d~~~l~~~i~~ 156 (398)
T TIGR03392 77 DAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP 156 (398)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCC
T ss_conf 98979995877999998987768872399898998244003423899988764485279961478898799999985257
Q ss_pred HHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCCC
Q ss_conf 10002478607971462157661346899999863136089861311222347776401100001346521001346565
Q gi|254780486|r 156 WRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALG 235 (381)
Q Consensus 156 ~~~~~~~~~~~vv~egv~Sm~G~~apL~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~~~~~~~~iv~~TlsKa~g 235 (381)
T Consensus 157 -------~T~lVsi~~vsn~~G~i~pi~~I~~~~~~~g~~~~vDa~Q~~g~~-~------idv~~~~~D~~~~S~hKl~G 222 (398)
T TIGR03392 157 -------RTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHG-P------PDVQALDIDFYAFSGHKLYG 222 (398)
T ss_pred -------CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCC-C------CCCCCCCCCEEEEECCCCCC
T ss_conf -------870899825556788858799999999865974786334115620-3------34102678779986553569
Q ss_pred CEE-EEEECCCCCCCCCCC-CC-----------------CCEEC-CCCCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHH
Q ss_conf 302-675245100100001-21-----------------10000-13577502578988789886271--0224789999
Q gi|254780486|r 236 SSG-ALVGSNKIIYDYLIN-YA-----------------KPFIY-TTSPSPILAVVACEALKLIKRKP--ALHKSLLQLI 293 (381)
Q Consensus 236 ~~G-G~i~~~~~ii~~l~~-~~-----------------~~~if-st~l~P~~~aaa~aal~~l~~~~--~~~~~l~~~~ 293 (381)
T Consensus 223 P~G~G~Ly~~~~~~~~l~p~~~Gg~~~~~~~~~~~~~~~~~~r~e~GT~n~~~i~gl~~al~~l~~~~~~~~~~~~~~L~ 302 (398)
T TIGR03392 223 PTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLA 302 (398)
T ss_pred CCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 98418999841147437973579973443347776445550211468854878999999999999649999999999999
Q ss_pred HHHHHHHHCCCCC----CCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEECCCCCC----CC-CCEEEEECCCCCCHHH
Q ss_conf 9999876417978----9989728999589799999999999779189862288888----88-7039996287899999
Q gi|254780486|r 294 NITDKIANKKIGF----SSQSHIQSIVIGDNKSCLNIAKNLQKKGFDIRAIRPPTVP----IN-TARLRISITLNVDEPT 364 (381)
Q Consensus 294 ~~~~~~~~~~~g~----~~~s~I~~v~~gd~~~a~~~~~~L~~~Gi~v~~i~~PtVp----~~-~~rlRi~v~a~~t~ed 364 (381)
T Consensus 303 ~~~~~~l~~l~g~~~~~~~~~~~~~f~~~~-~~~~~l~~~L~~~gi~v~~G~~ca~~~l~a~g~~g~iRvS~~~ynT~ed 381 (398)
T TIGR03392 303 DLAEERLAQLPGFRSFRCPGSSLLAFDFAG-VHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQD 381 (398)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEECC-CCHHHHHHHHHHCCCEEECCCCCCHHHHHHHCCCCEEEEECCCCCCHHH
T ss_conf 999999863899644579999679998799-3999999999778979966866548999986899879996788889999
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999988738
Q gi|254780486|r 365 IVKLFDILPQIISEGN 380 (381)
Q Consensus 365 i~~~~~~l~~v~~E~~ 380 (381)
T Consensus 382 Id~li~aL~~~l~~l~ 397 (398)
T TIGR03392 382 VDALVDAVGAALELLN 397 (398)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999999843