HHsearch alignment for GI: 254780486 and conserved domain: TIGR03403
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation.
Probab=99.87 E-value=7.7e-19 Score=137.59 Aligned_cols=318 Identities=12% Similarity=0.076 Sum_probs=186.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH---HHHHHHCCCC--CEEEE-CCCCHHHHHHHHHHC------
Q ss_conf 98899999999998637868872244368858999999---9984012888--51674-166024565566631------
Q gi|254780486|r 44 SSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELE---EEAADFFGFE--KMLYF-GSGYAANMAILSTLP------ 111 (381)
Q Consensus 44 ~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE---~~lA~~~g~e--~al~~-~sG~~An~~~i~~l~------ 111 (381)
T Consensus 11 ~~~~Vi~~~~~~~~~~~~N-p~s~h-~~~-~~a~~~~e~aR~~ia~~l~a~~~~eIvFTsg~Tea~N~~~~gl~~~~~~~ 87 (382)
T TIGR03403 11 LDPKVKELMDPFFCDIYGN-PNSLH-QFG-TATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILK 87 (382)
T ss_pred CCHHHHHHHHHHHHHCCCC-CCHHH-HHH-HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999866899-63253-999-99999999999999997596997869993875899999999999998636
Q ss_pred CCCCCCCHHHHCCHHHHHHHH---HCCCCCEEECC-----CCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHH
Q ss_conf 689710045420267752666---40876403056-----8814789976431000247860797146215766134689
Q gi|254780486|r 112 QATDLIVYDKLVHASIREGIN---SGKAQAIAIPH-----NNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLD 183 (381)
Q Consensus 112 ~~~d~ii~D~~~HaSi~~g~~---ls~a~~~~f~H-----nD~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~apL~ 183 (381)
T Consensus 88 ~~~~~ii~s~~EH~sv~~~~~~l~~~G~~v~~~~~d~~G~~d~~~l~~~l~~-------~T~LVai~~anN~tG~i~pv~ 160 (382)
T TIGR03403 88 GGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITE-------KTALVSVMWANNETGMIFPIK 160 (382)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCC-------CCCEEEEECCCCCCCCCCCHH
T ss_conf 8999999955651538999999996597899977599985889999976014-------660677631476777778799
Q ss_pred HHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCEE-EEEECCCCCC-CCCCCCCCCEE--
Q ss_conf 9999863136089861311222347776401100001346521001346565302-6752451001-00001211000--
Q gi|254780486|r 184 DLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSKALGSSG-ALVGSNKIIY-DYLINYAKPFI-- 259 (381)
Q Consensus 184 ~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~~~~~~~~iv~~TlsKa~g~~G-G~i~~~~~ii-~~l~~~~~~~i-- 259 (381)
T Consensus 161 ~I~~~~~~~g~~~~vDa~Q~~g~~-------pidv~~l~~D~l~~S~HK~~GP~GiG~L~ir~~~~l~P~-~~Gg~~~~~ 232 (382)
T TIGR03403 161 EIGEICKERGVLFHTDAVQAIGKI-------PVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGVELTPL-FHGGEHMGG 232 (382)
T ss_pred HHHHHHHHCCCEEEEEHHHHCCCC-------CCCCCCCCCCEEEEEHHHCCCCCCEEEEEECCCCCCCCC-CCCCCCCCC
T ss_conf 999999872987996713413564-------643232346524531010368883499998677765876-589877476
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCCCCC------CCCCC-EEEEEECCHHHHHHHHHHH
Q ss_conf -01357750257898878988627-102247899999999876417978------99897-2899958979999999999
Q gi|254780486|r 260 -YTTSPSPILAVVACEALKLIKRK-PALHKSLLQLINITDKIANKKIGF------SSQSH-IQSIVIGDNKSCLNIAKNL 330 (381)
Q Consensus 260 -fst~l~P~~~aaa~aal~~l~~~-~~~~~~l~~~~~~~~~~~~~~~g~------~~~s~-I~~v~~gd~~~a~~~~~~L 330 (381)
T Consensus 233 ~r~GT~n~~~i~~l~~A~~~~~~~~~~~~~~~~~L~~~l~~~L~~i~~~~i~g~~~~r~p~~~~~~~~-~i~~~~~~~~L 311 (382)
T TIGR03403 233 RRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIK-GVEGEAMLWDL 311 (382)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCCEEEEECC-CCCHHHHHHHH
T ss_conf 12798678899999999999999899999999999999999998177946716833258857986279-98989999984
Q ss_pred HHCCEEEEEECC-------C--C-----CCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 977918986228-------8--8-----888--870399962878999999999999999988738
Q gi|254780486|r 331 QKKGFDIRAIRP-------P--T-----VPI--NTARLRISITLNVDEPTIVKLFDILPQIISEGN 380 (381)
Q Consensus 331 ~~~Gi~v~~i~~-------P--t-----Vp~--~~~rlRi~v~a~~t~edi~~~~~~l~~v~~E~~ 380 (381)
T Consensus 312 ~~~gI~v~~GsaCas~~~~~s~vl~a~g~~~~~~~~~vR~S~~~ynT~eeId~~i~~l~~~v~~lr 377 (382)
T TIGR03403 312 NKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLR 377 (382)
T ss_pred CCCCEEEECHHHHCCCCCCCCHHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 709979975577289988758999971998544595799975899999999999999999999998