HHsearch alignment for GI: 254780486 and conserved domain: TIGR03531
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=98.40 E-value=5.2e-05 Score=51.35 Aligned_cols=326 Identities=14% Similarity=0.189 Sum_probs=159.4
Q ss_pred EEEECCCCCCCCCC---C-CHHHHHHHHHHHHHHCCCCCCCCC--C-------CCCCCHHHHHHHHHHH----HHCC---
Q ss_conf 68980344656677---9-889999999999863786887224--4-------3688589999999984----0128---
Q gi|254780486|r 30 DIWDFTSHDYLALS---S-STLLREKILSSLDSKIPIGSGGSR--L-------LCGNYNQHLELEEEAA----DFFG--- 89 (381)
Q Consensus 30 ~~l~f~s~dYLGl~---~-~p~v~~a~~~a~~~~~g~~~~~sr--~-------~~G~~~~~~~lE~~lA----~~~g--- 89 (381)
T Consensus 46 ~Ls~mDsNNf~~~vgvGEREgRv~s~LV~r--rhy~f~HGIGRSGdl~~~QPKAaGSSll-~kLTn~l~ld~lr~~G~~s 122 (444)
T TIGR03531 46 ELSVMDTNNFPNNVGVGEREGRVFSKLVER--RHYGFCHGIGRSGDLVAPQPKAAGSSLL-YKLTNKLVKDFLKLLGLRS 122 (444)
T ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHH--HHCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHCCCCC
T ss_conf 997413268844477552057787799997--6037666778755546568776232899-9999999999999839853
Q ss_pred CCCEEEECCCCHHHHHH-HHHHCC---CCCCCCHHHHCCHHHHHHHHHCCCCCEEEC--------CCCHHHHHHHHHHHH
Q ss_conf 88516741660245655-666316---897100454202677526664087640305--------688147899764310
Q gi|254780486|r 90 FEKMLYFGSGYAANMAI-LSTLPQ---ATDLIVYDKLVHASIREGINSGKAQAIAIP--------HNNINSFAENINKWR 157 (381)
Q Consensus 90 ~e~al~~~sG~~An~~~-i~~l~~---~~d~ii~D~~~HaSi~~g~~ls~a~~~~f~--------HnD~~~Le~~l~~~~ 157 (381)
T Consensus 123 ~~~~~vvP~ATGMsL~LcL~alr~~rp~a~yViw~RiDQKSc~K~i~~AGl~pivie~~l~gd~l~tdv~~ie~~i~~~g 202 (444)
T TIGR03531 123 VKSAIVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGLEPRVIETVLDGDRLTTDVEDIERAIEEIG 202 (444)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEEEEECCCEEECCHHHHHHHHHHHC
T ss_conf 26579962534518999999985018899889985355532688998659727997407518877469999999999828
Q ss_pred HCCCCCCCEEEECCCCCCCCCHHH-----HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEHH----CCCCCCCCC
Q ss_conf 002478607971462157661346-----89999986313608986131122234777640110000----134652100
Q gi|254780486|r 158 KSGGKGFPWIVVESIYSMDGDKAP-----LDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIE----ERNNVIVMH 228 (381)
Q Consensus 158 ~~~~~~~~~vv~egv~Sm~G~~ap-----L~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~~~----~~~~~iv~~ 228 (381)
T Consensus 203 ~---~~i~cV-----lSTTScFAPR~~D~i~eiAklC~~~~IpHvVNNAYGl-----Q~~~~~~~i~~A~r~GRVDa~VQ 269 (444)
T TIGR03531 203 P---ENILCV-----LSTTSCFAPRSPDDIEEIAKICAKYDIPHVVNNAYGL-----QSNKYMEKINKAIKVGRVDAVVS 269 (444)
T ss_pred C---CCEEEE-----EECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHH-----HHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 6---764799-----8536545999976699999999974998378420366-----17999999999986498319997
Q ss_pred CCCCCCCC-EE-EEEEC-CCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHH--------HHHHHCCCHHHHHHHHHHHHH
Q ss_conf 13465653-02-67524-510010000121100001357750257898878--------988627102247899999999
Q gi|254780486|r 229 SCSKALGS-SG-ALVGS-NKIIYDYLINYAKPFIYTTSPSPILAVVACEAL--------KLIKRKPALHKSLLQLINITD 297 (381)
Q Consensus 229 TlsKa~g~-~G-G~i~~-~~~ii~~l~~~~~~~ifst~l~P~~~aaa~aal--------~~l~~~~~~~~~l~~~~~~~~ 297 (381)
T Consensus 270 StDKNflVPVGGaII~s~d~~~i~~is---~~YPGRAS~sp~lD-lfITLLslG~~gy~~Ll~eRke~~~~l~~~L~~~a 345 (444)
T TIGR03531 270 STDKNFMVPVGGAIIYSFDENFIQEIS---KSYPGRASASPSLD-VLITLLSMGSKGYLELLKERKEMYKYLKELLQKLA 345 (444)
T ss_pred ECCCCEEEECCCEEEEECCHHHHHHHH---HCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 068662543487489718889999998---41899777740799-99999997488899999999999999999999999
Q ss_pred -HHHHCCCCCCCCCCEEEEE-E--CCHHHHHHHHHHHHHCCEEEEEECCCCCCC--C---------------CCEEEEEC
Q ss_conf -8764179789989728999-5--897999999999997791898622888888--8---------------70399962
Q gi|254780486|r 298 -KIANKKIGFSSQSHIQSIV-I--GDNKSCLNIAKNLQKKGFDIRAIRPPTVPI--N---------------TARLRISI 356 (381)
Q Consensus 298 -~~~~~~~g~~~~s~I~~v~-~--gd~~~a~~~~~~L~~~Gi~v~~i~~PtVp~--~---------------~~rlRi~v 356 (381)
T Consensus 346 ~~~gerlL~-t~~N~IS~aitl~~l~~~~~t~lGsmLf~r~VsG~RVV~~~~~k~i~g~~F~~~gsh~~~yp~~Ylt~aa 424 (444)
T TIGR03531 346 ERHGERLLD-VPENPISSAMTLNTLRPKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAA 424 (444)
T ss_pred HHHCCEECC-CCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCEEECCEEEECCCCCCCCCCCHHHHHHH
T ss_conf 982987214-8999505778736678767899999997368875617758997388787750677776778525799888
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q ss_conf 87899999999999999998
Q gi|254780486|r 357 TLNVDEPTIVKLFDILPQII 376 (381)
Q Consensus 357 ~a~~t~edi~~~~~~l~~v~ 376 (381)
T Consensus 425 aIG~~~~dvd~f~~rLdk~l 444 (444)
T TIGR03531 425 AIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred HHCCCHHHHHHHHHHHHHCC
T ss_conf 81885899999999986149