>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

Probab=99.86 E-value=1.8e-18 Score=135.31 Aligned_cols=333 Identities=15% Similarity=0.098 Sum_probs=183.1 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 86578999999999975983999289768980344656677988999999999986378688722443688589999999 Q gi|254780486|r 3 NIQMSFYEERLQKIKSKGRHRQLLRRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEE 82 (381) Q Consensus 3 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~ 82 (381) T Consensus 3 ~~~~~~~~~~~~~~~~--------~~~~vI~L~iG~P-d~p~p~~i~~a~~~a~~-~~--~Y~~~---~G~~eLReaia~ 67 (357) T TIGR03539 3 DFPWDSLAPYKAKAAS--------HPDGIVDLSVGTP-VDPVPPLIRAALAAAAD-AP--GYPQT---WGTPELREAIVD 67 (357) T ss_pred CCHHHHHHHHHHHHHH--------CCCCEEECCCCCC-CCCCCHHHHHHHHHHHC-CC--CCCCC---CCCHHHHHHHHH T ss_conf 8759999999998886--------8999288879999-99989999999997124-79--98998---477999999999 Q ss_pred HHHHHCC----CCCEEEECCCCHHHHHHH-HHH-CCCCCCCCHHHHCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHH Q ss_conf 9840128----885167416602456556-663-1689710045420267752666408764030568814789976431 Q gi|254780486|r 83 EAADFFG----FEKMLYFGSGYAANMAIL-STL-PQATDLIVYDKLVHASIREGINSGKAQAIAIPHNNINSFAENINKW 156 (381) Q Consensus 83 ~lA~~~g----~e~al~~~sG~~An~~~i-~~l-~~~~d~ii~D~~~HaSi~~g~~ls~a~~~~f~HnD~~~Le~~l~~~ 156 (381) T Consensus 68 ~~~~~~g~~~~~~~~I~vt~G~~~al~~l~~~l~~~pGD~Vli~~P~y~~y~~~~~~~g~~~v~~-----d~~~~~~--- 139 (357) T TIGR03539 68 WLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAA-----DDPTELD--- 139 (357) T ss_pred HHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEEC-----CCHHHCC--- T ss_conf 99997199979957599868879999999999707999989978887700899999859989823-----8866679--- Q ss_pred HHCCCCCCCEEEECCCCCCCCCHH---HHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEE---EHHCCCCCCCCCCC Q ss_conf 000247860797146215766134---689999986313608986131122234777640110---00013465210013 Q gi|254780486|r 157 RKSGGKGFPWIVVESIYSMDGDKA---PLDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTH---IIEERNNVIVMHSC 230 (381) Q Consensus 157 ~~~~~~~~~~vv~egv~Sm~G~~a---pL~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~---~~~~~~~~iv~~Tl 230 (381) T Consensus 140 ----~~~~k~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~i~visDEiY~~~~~~~~~~s~l~~~~~~~~~~~~i~~~S~ 215 (357) T TIGR03539 140 ----PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSL 215 (357) T ss_pred ----CCCCEEEEECCCCCCCHHCCCHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEEEC T ss_conf ----7785499989998962320828899999873205558995233247653589884302864537675767999615 Q ss_pred CCCCCCEE---EEEECCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHCCC Q ss_conf 46565302---67524510010000121100001357750257898878988627102---2478999999998764179 Q gi|254780486|r 231 SKALGSSG---ALVGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPAL---HKSLLQLINITDKIANKKI 304 (381) Q Consensus 231 sKa~g~~G---G~i~~~~~ii~~l~~~~~~~ifst~l~P~~~aaa~aal~~l~~~~~~---~~~l~~~~~~~~~~~~~~~ 304 (381) T Consensus 216 SK~~~~~G~RiG~~~~~~~li~~l~~~-~~~~~~~-~~~~~q~a~~~al~---~~~~~~~~~~~~~~rr~~l~~-~L~~~ 289 (357) T TIGR03539 216 SKRSNLAGYRAGFVAGDPALVAELLTV-RKHAGLM-VPAPVQAAMVAALG---DDGHVAEQKARYAARRAQLKP-ALEKA 289 (357) T ss_pred CCCCCCCCCEEEEEECCHHHHHHHHHH-HHHCCCC-CCHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHH-HHHHC T ss_conf 310045561289996799999999999-9856777-88999999999956---927899999999999999999-99857 Q ss_pred CCC---CCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH Q ss_conf 789---98972899958979999999999977918986228888888703999628789999999999999 Q gi|254780486|r 305 GFS---SQSHIQSIVIGDNKSCLNIAKNLQKKGFDIRAIRPPTVPINTARLRISITLNVDEPTIVKLFDIL 372 (381) Q Consensus 305 g~~---~~s~I~~v~~gd~~~a~~~~~~L~~~Gi~v~~i~~PtVp~~~~rlRi~v~a~~t~edi~~~~~~l 372 (381) T Consensus 290 g~~~~~p~g~-~y~~~~~~~~~~~~~~~l~e~gV~v~PG~~F-g~~g~~~vRis~~--~~~e~l~eal~Rl 356 (357) T TIGR03539 290 GFRIDHSEAG-LYLWATRGEDAWDTVDRLAELGILVAPGDFY-GPAGSQHVRVALT--ATDERIAAAVARL 356 (357) T ss_pred CCEECCCCEE-EEEEEECCCCHHHHHHHHHHCCEEEECCCCC-CCCCCCEEEEEEC--CCHHHHHHHHHHC T ss_conf 9776268806-9998758999999999999699899478744-7899997999972--9999999999857

HHsearch alignment for GI: 254780486 and conserved domain: TIGR03539