HHsearch alignment for GI: 254780486 and conserved domain: TIGR03540

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.90  E-value=9.4e-21  Score=149.50  Aligned_cols=330  Identities=15%  Similarity=0.137  Sum_probs=191.3

Q ss_pred             CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCC---C-EEEECCCC-
Q ss_conf             897689803446566779889999999999863786-88722443688589999999984012888---5-16741660-
Q gi|254780486|r   27 RRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPI-GSGGSRLLCGNYNQHLELEEEAADFFGFE---K-MLYFGSGY-  100 (381)
Q Consensus        27 ~~~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~~g~-~~~~sr~~~G~~~~~~~lE~~lA~~~g~e---~-al~~~sG~-  100 (381)
T Consensus        27 ~G~dvi~l~ig~p-df~~p~~i~~a~~~a~~~-~~~~~Y~~~---~G~~~lreaia~~~~~~~g~~~~p~~~vi~t~Ga~  101 (383)
T TIGR03540        27 EGVDVISLGIGDP-DLPTPKHIVEALCKAAEN-PENHRYPSY---EGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSK  101 (383)
T ss_pred             CCCCEEECCCCCC-CCCCCHHHHHHHHHHHHC-CCCCCCCCC---CCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCH
T ss_conf             6998588889989-999899999999999828-887654998---78499999999999998689899676699847825


Q ss_pred             HHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCEEEC---CC----CHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf             245655666316897100454202677526664087640305---68----81478997643100024786079714621
Q gi|254780486|r  101 AANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQAIAIP---HN----NINSFAENINKWRKSGGKGFPWIVVESIY  173 (381)
Q Consensus       101 ~An~~~i~~l~~~~d~ii~D~~~HaSi~~g~~ls~a~~~~f~---Hn----D~~~Le~~l~~~~~~~~~~~~~vv~egv~  173 (381)
T Consensus       102 ~al~~~~~~l~~pGD~Vli~~P~Y~~y~~~~~~~g~~~v~vpl~~~~~~~~d~e~l~~~~~------~~~k~iil~~P~N  175 (383)
T TIGR03540       102 EGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA------KKAKLMFINYPNN  175 (383)
T ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCC------CCCEEEEECCCCC
T ss_conf             9999999996689898998789860169999971985899613357798579999987452------3774999899989


Q ss_pred             CCCCCHH---HHHHHHHHHHHCCEEEEECCCCCCCCCCCC-CCEEEEEHHCCCCCCCCCCCCCCCCCEE---EEEECCCC
Q ss_conf             5766134---689999986313608986131122234777-6401100001346521001346565302---67524510
Q gi|254780486|r  174 SMDGDKA---PLDDLVKIANDYDGFIVVDEAHATGVCGPL-GKGLTHIIEERNNVIVMHSCSKALGSSG---ALVGSNKI  246 (381)
Q Consensus       174 Sm~G~~a---pL~~i~~l~~~y~~~LivDEah~~Gv~G~~-G~G~~~~~~~~~~~iv~~TlsKa~g~~G---G~i~~~~~  246 (381)
T Consensus       176 P-TG~v~s~~~l~~i~~la~~~~i~iIsDEiY~~l~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~i~~~~  254 (383)
T TIGR03540       176 P-TGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNAD  254 (383)
T ss_pred             C-CCCCCCCHHHHCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCEEEEECCCHH
T ss_conf             7-070121022220100124554057611025553038999977111366554257763023544788734896228999


Q ss_pred             CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCCCCCC---CCC-CEEEEEECCHH
Q ss_conf             010000121100001357750257898878988627-1022478999999998764179789---989-72899958979
Q gi|254780486|r  247 IYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRK-PALHKSLLQLINITDKIANKKIGFS---SQS-HIQSIVIGDNK  321 (381)
Q Consensus       247 ii~~l~~~~~~~ifst~l~P~~~aaa~aal~~l~~~-~~~~~~l~~~~~~~~~~~~~~~g~~---~~s-~I~~v~~gd~~  321 (381)
T Consensus       255 l~~~~~~~-~~~~~~~~~~~-~q~a~~~al~~~~~~~~~~~~~~~~~r~~~~~~-L~~~g~~~~~p~g~~~~w~~~~~~~  331 (383)
T TIGR03540       255 LIAGLGKV-KTNVDSGVFQA-IQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEA-LKKIGIDVEKPKATFYVWVPVPEGY  331 (383)
T ss_pred             HHHHHHHH-HHHHCCCCCHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HHHCCCEEECCCCEEEEEEECCCCC
T ss_conf             99999999-75513567659-999999998591999999999999999999999-9876987735780579989899998


Q ss_pred             HHHHHHHHHHH-CCEEEEEEC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999997-791898622-8888888703999628789999999999999999
Q gi|254780486|r  322 SCLNIAKNLQK-KGFDIRAIR-PPTVPINTARLRISITLNVDEPTIVKLFDILPQI  375 (381)
Q Consensus       322 ~a~~~~~~L~~-~Gi~v~~i~-~PtVp~~~~rlRi~v~a~~t~edi~~~~~~l~~v  375 (381)
T Consensus       332 ~~~~~~~~ll~~~gV~v~PG~~Fg--~~g~~~iRl~~~--~~~e~l~eal~RL~kl  383 (383)
T TIGR03540       332 TSAEFAARLLEETGVVVTPGVGFG--EYGEGYIRISLT--VPDERLEEAVARIKKL  383 (383)
T ss_pred             CHHHHHHHHHHHCCEEEECCHHHC--CCCCCEEEEEEE--CCHHHHHHHHHHHHCC
T ss_conf             989999999983999998885328--899886999986--9999999999998449