HHsearch alignment for GI: 254780486 and conserved domain: TIGR03540
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.90 E-value=9.4e-21 Score=149.50 Aligned_cols=330 Identities=15% Similarity=0.137 Sum_probs=191.3
Q ss_pred CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCC---C-EEEECCCC-
Q ss_conf 897689803446566779889999999999863786-88722443688589999999984012888---5-16741660-
Q gi|254780486|r 27 RRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPI-GSGGSRLLCGNYNQHLELEEEAADFFGFE---K-MLYFGSGY- 100 (381)
Q Consensus 27 ~~~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~~g~-~~~~sr~~~G~~~~~~~lE~~lA~~~g~e---~-al~~~sG~- 100 (381)
T Consensus 27 ~G~dvi~l~ig~p-df~~p~~i~~a~~~a~~~-~~~~~Y~~~---~G~~~lreaia~~~~~~~g~~~~p~~~vi~t~Ga~ 101 (383)
T TIGR03540 27 EGVDVISLGIGDP-DLPTPKHIVEALCKAAEN-PENHRYPSY---EGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSK 101 (383)
T ss_pred CCCCEEECCCCCC-CCCCCHHHHHHHHHHHHC-CCCCCCCCC---CCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCH
T ss_conf 6998588889989-999899999999999828-887654998---78499999999999998689899676699847825
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCCEEEC---CC----CHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 245655666316897100454202677526664087640305---68----81478997643100024786079714621
Q gi|254780486|r 101 AANMAILSTLPQATDLIVYDKLVHASIREGINSGKAQAIAIP---HN----NINSFAENINKWRKSGGKGFPWIVVESIY 173 (381)
Q Consensus 101 ~An~~~i~~l~~~~d~ii~D~~~HaSi~~g~~ls~a~~~~f~---Hn----D~~~Le~~l~~~~~~~~~~~~~vv~egv~ 173 (381)
T Consensus 102 ~al~~~~~~l~~pGD~Vli~~P~Y~~y~~~~~~~g~~~v~vpl~~~~~~~~d~e~l~~~~~------~~~k~iil~~P~N 175 (383)
T TIGR03540 102 EGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA------KKAKLMFINYPNN 175 (383)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCC------CCCEEEEECCCCC
T ss_conf 9999999996689898998789860169999971985899613357798579999987452------3774999899989
Q ss_pred CCCCCHH---HHHHHHHHHHHCCEEEEECCCCCCCCCCCC-CCEEEEEHHCCCCCCCCCCCCCCCCCEE---EEEECCCC
Q ss_conf 5766134---689999986313608986131122234777-6401100001346521001346565302---67524510
Q gi|254780486|r 174 SMDGDKA---PLDDLVKIANDYDGFIVVDEAHATGVCGPL-GKGLTHIIEERNNVIVMHSCSKALGSSG---ALVGSNKI 246 (381)
Q Consensus 174 Sm~G~~a---pL~~i~~l~~~y~~~LivDEah~~Gv~G~~-G~G~~~~~~~~~~~iv~~TlsKa~g~~G---G~i~~~~~ 246 (381)
T Consensus 176 P-TG~v~s~~~l~~i~~la~~~~i~iIsDEiY~~l~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~i~~~~ 254 (383)
T TIGR03540 176 P-TGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNAD 254 (383)
T ss_pred C-CCCCCCCHHHHCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCEEEEECCCHH
T ss_conf 7-070121022220100124554057611025553038999977111366554257763023544788734896228999
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCCCCCC---CCC-CEEEEEECCHH
Q ss_conf 010000121100001357750257898878988627-1022478999999998764179789---989-72899958979
Q gi|254780486|r 247 IYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRK-PALHKSLLQLINITDKIANKKIGFS---SQS-HIQSIVIGDNK 321 (381)
Q Consensus 247 ii~~l~~~~~~~ifst~l~P~~~aaa~aal~~l~~~-~~~~~~l~~~~~~~~~~~~~~~g~~---~~s-~I~~v~~gd~~ 321 (381)
T Consensus 255 l~~~~~~~-~~~~~~~~~~~-~q~a~~~al~~~~~~~~~~~~~~~~~r~~~~~~-L~~~g~~~~~p~g~~~~w~~~~~~~ 331 (383)
T TIGR03540 255 LIAGLGKV-KTNVDSGVFQA-IQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEA-LKKIGIDVEKPKATFYVWVPVPEGY 331 (383)
T ss_pred HHHHHHHH-HHHHCCCCCHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HHHCCCEEECCCCEEEEEEECCCCC
T ss_conf 99999999-75513567659-999999998591999999999999999999999-9876987735780579989899998
Q ss_pred HHHHHHHHHHH-CCEEEEEEC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999997-791898622-8888888703999628789999999999999999
Q gi|254780486|r 322 SCLNIAKNLQK-KGFDIRAIR-PPTVPINTARLRISITLNVDEPTIVKLFDILPQI 375 (381)
Q Consensus 322 ~a~~~~~~L~~-~Gi~v~~i~-~PtVp~~~~rlRi~v~a~~t~edi~~~~~~l~~v 375 (381)
T Consensus 332 ~~~~~~~~ll~~~gV~v~PG~~Fg--~~g~~~iRl~~~--~~~e~l~eal~RL~kl 383 (383)
T TIGR03540 332 TSAEFAARLLEETGVVVTPGVGFG--EYGEGYIRISLT--VPDERLEEAVARIKKL 383 (383)
T ss_pred CHHHHHHHHHHHCCEEEECCHHHC--CCCCCEEEEEEE--CCHHHHHHHHHHHHCC
T ss_conf 989999999983999998885328--899886999986--9999999999998449