HHsearch alignment for GI: 254780486 and conserved domain: TIGR03576
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.58 E-value=1.7e-12 Score=98.05 Aligned_cols=325 Identities=18% Similarity=0.230 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCC-EEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 5789999999999759839992897-689803446566779889999999999863786887224436885899999999
Q gi|254780486|r 5 QMSFYEERLQKIKSKGRHRQLLRRQ-DIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEE 83 (381)
Q Consensus 5 ~~~~~~~~l~~~~~~g~~~~~~~~~-~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~~ 83 (381)
T Consensus 3 e~~r~~~a~~ii~~~----i~~~gr~~lyDl-----tGLsggf~i~~~~~~LleT-Y-v---Gpaif~------ek~~~~ 62 (346)
T TIGR03576 3 EVKRREKALEIIREK----ISRGGRDSLYDL-----TGLAGGFKIDEEDLELLET-Y-V---GPAIFE------EKVQEL 62 (346)
T ss_pred HHHHHHHHHHHHHHH----HHHCCCCCCCCC-----CCCCCCCCCCHHHHHHHHH-H-H---CCHHHH------HHHHHH
T ss_conf 788889999999999----851486642103-----4456784437868889997-5-0---508769------999999
Q ss_pred HHHHCCC--CCEEEECCCCHHHHHHHHHHCCCCCCCC---HHHHCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHH
Q ss_conf 8401288--8516741660245655666316897100---4542026775266640876403056881478997643100
Q gi|254780486|r 84 AADFFGF--EKMLYFGSGYAANMAILSTLPQATDLIV---YDKLVHASIREGINSGKAQAIAIPHNNINSFAENINKWRK 158 (381)
Q Consensus 84 lA~~~g~--e~al~~~sG~~An~~~i~~l~~~~d~ii---~D~~~HaSi~~g~~ls~a~~~~f~HnD~~~Le~~l~~~~~ 158 (381)
T Consensus 63 g~~HlgG~~e~~v~~NRTSsailAtIlaL~~~~~~Vvh~vPe~paHPSI~rsc~lagaey~E~-----d~~~e-l~~~d- 135 (346)
T TIGR03576 63 GREHLGGPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIPRSCKLAGAEYFES-----DELSE-LKKID- 135 (346)
T ss_pred HHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCEEEC-----CCHHH-HCCCC-
T ss_conf 998739983257774562699999999835788705897878789997302005148714750-----66776-27678-
Q ss_pred CCCCCCCEEEECCCCCCCCCHHH---HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEHH---CCCCCCCCCCCCC
Q ss_conf 02478607971462157661346---89999986313608986131122234777640110000---1346521001346
Q gi|254780486|r 159 SGGKGFPWIVVESIYSMDGDKAP---LDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIE---ERNNVIVMHSCSK 232 (381)
Q Consensus 159 ~~~~~~~~vv~egv~Sm~G~~ap---L~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~~~---~~~~~iv~~TlsK 232 (381)
T Consensus 136 ----~~slvviTgst-md~~vi~~d~~k~vI~~Ak~~~a~V~vDDAsG-----ARvR-~L~gq~~al~lGADLvVTS~DK 204 (346)
T TIGR03576 136 ----GTSLVVITGST-MDLKVVSEEDLKRVIKQAKSKEAIVLVDDASG-----ARVR-RLYGQPPALDLGADLVVTSTDK 204 (346)
T ss_pred ----CCCEEEEECCC-CCCEECCHHHHHHHHHHHHHCCCEEEEECCCC-----CCHH-HHCCCCCCCCCCCCEEEEEHHH
T ss_conf ----87189993787-77300457889999999874698499854888-----7516-6519998655564268840021
Q ss_pred CC-CCEEEEEECCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 56-53026752451001000012110000135775025789887898862710224789999999987641797899897
Q gi|254780486|r 233 AL-GSSGALVGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRKPALHKSLLQLINITDKIANKKIGFSSQSH 311 (381)
Q Consensus 233 a~-g~~GG~i~~~~~ii~~l~~~~~~~ifst~l~P~~~aaa~aal~~l~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~s~ 311 (381)
T Consensus 205 lM~GPR~GlLaG~~eLV~ki~~~~~~--~GlEaq~Pi~aAmv~aLe~f~--~~~l~~a~~r~~~~~l~~~~~l~~e-~Tp 279 (346)
T TIGR03576 205 LMDGPRGGLLAGRKELVDKIKSVGEQ--FGLEAQAPLLAAVVRALEEFE--LSRIRDAFKRKEEVYLRLFDKLNVE-RTP 279 (346)
T ss_pred CCCCCCCCEECCCHHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHCCCCC-CCC
T ss_conf 26677541122888999999999875--277778415999999997079--9999999999999887653035743-278
Q ss_pred EEEEEEC-CHHHHHHHHHHHH-HCCEEEE-EECCCCCCCCCCEEEEECCCCCC-HHHHHHHHHHHHHH
Q ss_conf 2899958-9799999999999-7791898-62288888887039996287899-99999999999999
Q gi|254780486|r 312 IQSIVIG-DNKSCLNIAKNLQ-KKGFDIR-AIRPPTVPINTARLRISITLNVD-EPTIVKLFDILPQI 375 (381)
Q Consensus 312 I~~v~~g-d~~~a~~~~~~L~-~~Gi~v~-~i~~PtVp~~~~rlRi~v~a~~t-~edi~~~~~~l~~v 375 (381)
T Consensus 280 tGf~ik~~~~e~~~~~~~~LL~~ygIiTIta~Gmpga---sktlR~d~~skDAeri~~~~~v~av~~s 344 (346)
T TIGR03576 280 TGFVIKGVEEEKLIEIGLDLLRNYGIITITAVGMPGA---SKTLRFDLAAKDAERIGDDYLVEAVKDS 344 (346)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCEEEEECCCCCCC---CCEEEEEEECCCHHHHCHHHHHHHHHHH
T ss_conf 5379856568888999999999769489834778887---6326876202516551579999999854