HHsearch alignment for GI: 254780486 and conserved domain: TIGR03588
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.84 E-value=3e-18 Score=133.91 Aligned_cols=304 Identities=14% Similarity=0.147 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHH-CCCCCCCCHHHHCC
Q ss_conf 89999999999863786887224436885899999999840128885167416602456556663-16897100454202
Q gi|254780486|r 46 TLLREKILSSLDSKIPIGSGGSRLLCGNYNQHLELEEEAADFFGFEKMLYFGSGYAANMAILSTL-PQATDLIVYDKLVH 124 (381)
Q Consensus 46 p~v~~a~~~a~~~~~g~~~~~sr~~~G~~~~~~~lE~~lA~~~g~e~al~~~sG~~An~~~i~~l-~~~~d~ii~D~~~H 124 (381)
T Consensus 10 ~~e~~~v~~~l~s~~~--------~~G--~~v~~fE~~~~~~~g~k~~v~~~sgT~AL~lal~al~~~~gdeVivp~~tf 79 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFL--------TQG--PTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDEVWTTPITF 79 (380)
T ss_pred HHHHHHHHHHHHCCCC--------CCC--HHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCC
T ss_conf 9999999999847986--------689--769999999999978594999758899999999984999989999678530
Q ss_pred HHHHHHHHHCCCCCEEEC------CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEEE
Q ss_conf 677526664087640305------68814789976431000247860797146215766134689999986313608986
Q gi|254780486|r 125 ASIREGINSGKAQAIAIP------HNNINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPLDDLVKIANDYDGFIVV 198 (381)
Q Consensus 125 aSi~~g~~ls~a~~~~f~------HnD~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~apL~~i~~l~~~y~~~Liv 198 (381)
T Consensus 80 ~at~~ai~~~Ga~pvf~Dvd~~t~~id~~~l~~~it~~~~--~ktkaIi~vh----~~G~~~d~~~i~~ia~~~~i~lIE 153 (380)
T TIGR03588 80 VATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKG--KLPKAIVPVD----FAGKSVDMQAIAALAKKHGLKIIE 153 (380)
T ss_pred HHHHHHHHHCCCEEEEEECCHHHCCCCHHHHHHHHHHCCC--CCCEEEEEEC----CCCEECCHHHHHHHHHHCCCEEEE
T ss_conf 8867999987996899844100014898887777764367--7725999948----985434899999999986988999
Q ss_pred CCCCCCCCCCCCCCEEEEEHHC--CCCCCCCCCCC----CCCCC-EEEEEEC-CCCCCCC---CCCCCCC----------
Q ss_conf 1311222347776401100001--34652100134----65653-0267524-5100100---0012110----------
Q gi|254780486|r 199 DEAHATGVCGPLGKGLTHIIEE--RNNVIVMHSCS----KALGS-SGALVGS-NKIIYDY---LINYAKP---------- 257 (381)
Q Consensus 199 DEah~~Gv~G~~G~G~~~~~~~--~~~~iv~~Tls----Ka~g~-~GG~i~~-~~~ii~~---l~~~~~~---------- 257 (381)
T Consensus 154 DaA~a~Ga~~-~gk~----~Gs~~~gd~---~~fSF~~~K~ittGeGG~i~tnd~~l~~~~r~lr~~G~~~~~~~~~~~~ 225 (380)
T TIGR03588 154 DASHALGAEY-GGKP----VGNCRYADA---TVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQD 225 (380)
T ss_pred ECCCHHCCCC-CCCC----CCCCCCCCE---EEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCHHCCCC
T ss_conf 8800115775-7876----566443524---6773355555777885399969999999999999769677731001467
Q ss_pred ---E-------ECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHCC-CCC-------CCCCCEEEEEEC
Q ss_conf ---0-------0013577502578988789886271022478999999-99876417-978-------998972899958
Q gi|254780486|r 258 ---F-------IYTTSPSPILAVVACEALKLIKRKPALHKSLLQLINI-TDKIANKK-IGF-------SSQSHIQSIVIG 318 (381)
Q Consensus 258 ---~-------ifst~l~P~~~aaa~aal~~l~~~~~~~~~l~~~~~~-~~~~~~~~-~g~-------~~~s~I~~v~~g 318 (381)
T Consensus 226 ~~~~~y~~~~~G~N~rmseiqAAig~~qL~~ld~~~---~~R~~ia~~Y~~~L~~~~~~~~~~~~~~~~~~~~~y~i~~~ 302 (380)
T TIGR03588 226 EGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFV---AKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLD 302 (380)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 887403663476665431241487688888899999---99999999999964789983567469998315689999982
Q ss_pred CH--HHHHHHHHHHHHCCEEEEEECCCCC--C-------C----C-----CCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 97--9999999999977918986228888--8-------8----8-----7039996287899999999999999998
Q gi|254780486|r 319 DN--KSCLNIAKNLQKKGFDIRAIRPPTV--P-------I----N-----TARLRISITLNVDEPTIVKLFDILPQII 376 (381)
Q Consensus 319 d~--~~a~~~~~~L~~~Gi~v~~i~~PtV--p-------~----~-----~~rlRi~v~a~~t~edi~~~~~~l~~v~ 376 (381)
T Consensus 303 ~~~~~~r~~l~~~L~~~gI~t~~~y~Plh~~p~~~~~~~~~~~p~ae~~~~~~l~LP~~~~Lt~~di~~I~~~Ik~vL 380 (380)
T TIGR03588 303 QEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCCHHCCHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 667314999999999779985672304422998882788799879999984979897999989999999999999869