HHsearch alignment for GI: 254780486 and conserved domain: pfam03841

Probab=99.13  E-value=6.4e-09  Score=75.75  Aligned_cols=220  Identities=21%  Similarity=0.231  Sum_probs=138.9

Q ss_pred             CHHHHHHHHHHHHHHCCCC----CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCHH
Q ss_conf             8899999999998637868----872244368858999999998401288851674166024565566631689710045
Q gi|254780486|r   45 STLLREKILSSLDSKIPIG----SGGSRLLCGNYNQHLELEEEAADFFGFEKMLYFGSGYAANMAILSTLPQATDLIVYD  120 (381)
Q Consensus        45 ~p~v~~a~~~a~~~~~g~~----~~~sr~~~G~~~~~~~lE~~lA~~~g~e~al~~~sG~~An~~~i~~l~~~~d~ii~D  120 (381)
T Consensus        19 ~~~a~~a~~~~~-~~y~nLE~dl~~g~R---G~R--~~~~~~ll~~ltgaE~a~vVNnnAaAv~L~l~~la~g~evivSR   92 (367)
T pfam03841        19 SEEAVEAAKEAA-RHYSNLEYDLESGKR---GSR--DSHLEELLCELTGAEDALVVNNNAAAVLLVLNTLAQGKEVIISR   92 (367)
T ss_pred             CHHHHHHHHHHH-CCCCHHHHHHHHCCC---CCH--HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEC
T ss_conf             999999999986-177203666741776---635--78999999986398659998783899999999875489057755


Q ss_pred             -HHCC--HH--HHHHHHHCCCCCEEECCCCH---HHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Q ss_conf             -4202--67--75266640876403056881---47899764310002478607971462157661--346899999863
Q gi|254780486|r  121 -KLVH--AS--IREGINSGKAQAIAIPHNNI---NSFAENINKWRKSGGKGFPWIVVESIYSMDGD--KAPLDDLVKIAN  190 (381)
Q Consensus       121 -~~~H--aS--i~~g~~ls~a~~~~f~HnD~---~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~--~apL~~i~~l~~  190 (381)
T Consensus        93 GelVeiGgsfRiPdim~~sGa~LvEVGtTNrT~l~DYe~AI~e~T-----a~llkVH~SN~~i~GFt~~v~~~el~~la~  167 (367)
T pfam03841        93 GELVEIGGSFRIPDIMKQSGARLVEVGTTNRTHLKDYEQAINENT-----ALLMKVHTSNYRIQGFTKEVSLAELVALGK  167 (367)
T ss_pred             CEEECCCCCCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCC-----EEEEEEECCCCEECCCCCCCCHHHHHHHHH
T ss_conf             545123875440899996597899825668889899998708246-----189999426512237467799999999998


Q ss_pred             HCCEEEEECCCCCCCCCCC-CCCEEEEEHHC-----CCCCCCCCCCCCCCCC-EEEEEECCCCCCCCCCCCC--CCEECC
Q ss_conf             1360898613112223477-76401100001-----3465210013465653-0267524510010000121--100001
Q gi|254780486|r  191 DYDGFIVVDEAHATGVCGP-LGKGLTHIIEE-----RNNVIVMHSCSKALGS-SGALVGSNKIIYDYLINYA--KPFIYT  261 (381)
Q Consensus       191 ~y~~~LivDEah~~Gv~G~-~G~G~~~~~~~-----~~~~iv~~TlsKa~g~-~GG~i~~~~~ii~~l~~~~--~~~ifs  261 (381)
T Consensus       168 ~~~ip~i~DlG--SG~l~d~~~~gl~~Ep~v~~~l~~GaDlV~FSGDKLLGGPQAGII~Gkk~lI~~ikknPL~RAl---  242 (367)
T pfam03841       168 EHGLPVYYDLG--SGSLVDLSQYGLPKEPTVQELLALGVDLVSFSGDKLLGGPQAGIIVGKKELIERLKKNPLKRAL---  242 (367)
T ss_pred             HCCCCEEEECC--CCCEECCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHCCHHHHH---
T ss_conf             76996799758--6631122001799999899999739988998676456898532476459999974647444544---


Q ss_pred             CCCCCCHHHHHHHHHHHHHH
Q ss_conf             35775025789887898862
Q gi|254780486|r  262 TSPSPILAVVACEALKLIKR  281 (381)
Q Consensus       262 t~l~P~~~aaa~aal~~l~~  281 (381)
T Consensus       243 -RvDKltLaaLeatL~~Yl~  261 (367)
T pfam03841       243 -RVDKLTLAALEATLRLYLN  261 (367)
T ss_pred             -CCCHHHHHHHHHHHHHHHC
T ss_conf             -4588999999999999849