HHsearch alignment for GI: 254780486 and conserved domain: pfam05889
>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=98.74 E-value=7e-07 Score=63.05 Aligned_cols=271 Identities=13% Similarity=0.167 Sum_probs=137.1
Q ss_pred CCCEEEECCCCHHHHHHHHHHCC--C-CCCCCHHHHCCHHHHHHHHHCCCCCEEE--------CCCCHHHHHHHHHHHHH
Q ss_conf 88516741660245655666316--8-9710045420267752666408764030--------56881478997643100
Q gi|254780486|r 90 FEKMLYFGSGYAANMAILSTLPQ--A-TDLIVYDKLVHASIREGINSGKAQAIAI--------PHNNINSFAENINKWRK 158 (381)
Q Consensus 90 ~e~al~~~sG~~An~~~i~~l~~--~-~d~ii~D~~~HaSi~~g~~ls~a~~~~f--------~HnD~~~Le~~l~~~~~ 158 (381)
T Consensus 74 ~~~~~vvP~aTGMsl~~~L~~~~~rp~a~yViw~RiDqKSc~Kai~~AGl~p~vVe~~~~~d~l~Td~~~ie~~i~~~g~ 153 (389)
T pfam05889 74 VKNCFVVPLATGMSLLCMLSWRRKRPKAKYVIWPRIDQKSSIKAAERAGFEPRLVETVLDGDYLITDVNDVETIIEEKGE 153 (389)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEEEEECCCEEECCHHHHHHHHHHHCC
T ss_conf 16578950410479999999985588997899863555226899997697148875252288243589999999998387
Q ss_pred CCCCCCCEEEECCCCCCCCCHHH-----HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEHH----CCCCCCCCCC
Q ss_conf 02478607971462157661346-----89999986313608986131122234777640110000----1346521001
Q gi|254780486|r 159 SGGKGFPWIVVESIYSMDGDKAP-----LDDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIE----ERNNVIVMHS 229 (381)
Q Consensus 159 ~~~~~~~~vv~egv~Sm~G~~ap-----L~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~~~----~~~~~iv~~T 229 (381)
T Consensus 154 ---~~ilcV-----lsTTScFaPR~pD~v~~IAklC~~~~IpHvVNnAYGl-----Q~~~~~~~i~~a~r~GRVDa~VQS 220 (389)
T pfam05889 154 ---EVILAV-----LSTTSCFAPRSPDNVKEIAKICAEYDVPHLVNGAYGI-----QSEETIRLIAAAHECGRVDAVVQS 220 (389)
T ss_pred ---CCEEEE-----EECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHH-----HHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf ---766899-----8446656999966799999999974997478430366-----179999999999863882189970
Q ss_pred CCCCCCC-E-EEEEEC-CCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHH--------HHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 3465653-0-267524-510010000121100001357750257898878--------9886271022478999999998
Q gi|254780486|r 230 CSKALGS-S-GALVGS-NKIIYDYLINYAKPFIYTTSPSPILAVVACEAL--------KLIKRKPALHKSLLQLINITDK 298 (381)
Q Consensus 230 lsKa~g~-~-GG~i~~-~~~ii~~l~~~~~~~ifst~l~P~~~aaa~aal--------~~l~~~~~~~~~l~~~~~~~~~ 298 (381)
T Consensus 221 tDKNflVPVGGaIIas~d~~~i~~is~---~YPGRAS~sp~lD-lfITLLslG~~gy~~Ll~eRke~~~~l~e~L~~~a~ 296 (389)
T pfam05889 221 LDKNFIVPVGGAIIAAFDESFIQEISE---EYPGRASARPSKD-KLITLLSLGCKAYLALMKEQKEMFPLLRELLKDLAE 296 (389)
T ss_pred CCCCEEEECCCEEEEECCHHHHHHHHH---CCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 686625534874897088899999984---1899777740799-999999974888999999999999999999999999
Q ss_pred HHHCCCCCCCCCCEEEEE-EC-----CHHHHHHHHHHHHHCCEEEEEECCCCCCCCC--------CEEEEECCCCCCHHH
Q ss_conf 764179789989728999-58-----9799999999999779189862288888887--------039996287899999
Q gi|254780486|r 299 IANKKIGFSSQSHIQSIV-IG-----DNKSCLNIAKNLQKKGFDIRAIRPPTVPINT--------ARLRISITLNVDEPT 364 (381)
Q Consensus 299 ~~~~~~g~~~~s~I~~v~-~g-----d~~~a~~~~~~L~~~Gi~v~~i~~PtVp~~~--------~rlRi~v~a~~t~ed 364 (381)
T Consensus 297 ~~ge~lL~t~~N~IS~aitl~~l~~~~~~~~t~lgs~Lf~r~VsG~RvV~~~~~~~~~~~~~y~~~Ylt~aaaiG~~~~d 376 (389)
T pfam05889 297 EVGEQLLDVPHNPISSAMTLETLDEISKKGRTDLGSELFSRRVTGARVVRSSDPFGTIEGCEYHGRYLNIASAIGMKDED 376 (389)
T ss_pred HHCCEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCHHHHHHHHCCCCHHH
T ss_conf 82987513899951688873455666755499999999756787651665688853461676883678999870886899
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999988
Q gi|254780486|r 365 IVKLFDILPQIIS 377 (381)
Q Consensus 365 i~~~~~~l~~v~~ 377 (381)
T Consensus 377 Vd~f~~rL~k~l~ 389 (389)
T pfam05889 377 VDYVIERLDEILE 389 (389)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999998529