HHsearch alignment for GI: 254780487 and conserved domain: COG0378
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription].
Probab=96.42 E-value=0.012 Score=36.06 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=53.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEECCCC-CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 299983589874799999999998404861-2013887-38068999998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK-PIQSGMY-EETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~~G~~-~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
T Consensus 15 ~i~v~G-p~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~--g~~i~~v~TG-----~~CH~da~m~~~ 85 (202)
T COG0378 15 RIGVGG-PPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLP--GEPIIGVETG-----KGCHLDASMNLE 85 (202)
T ss_pred EEEECC-CCCCCHHHHHHHHHHHHHHH-CCEEEEECEEECHHHHHHHHHCC--CCEEEEECCC-----CCCCCCHHHHHH
T ss_conf 999617-99867899999999999752-77689964040065599997377--9806874038-----765886788999
Q ss_pred CCHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 3507886422328879992276555667675
Q gi|254780487|r 82 IIDPATINPPDINDSIIIEGIGGLLVPLTTE 112 (217)
Q Consensus 82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~ 112 (217)
T Consensus 86 ai~~-l~~~~~~~Dll~iEs~GNL~~~~sp~ 115 (202)
T COG0378 86 AIEE-LVLDFPDLDLLFIESVGNLVCPFSPD 115 (202)
T ss_pred HHHH-HHHCCCCCCEEEEECCCCEECCCCCC
T ss_conf 9999-86317767789992376432446804