HHsearch alignment for GI: 254780487 and conserved domain: COG0552
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=97.84 E-value=0.00028 Score=46.23 Aligned_cols=171 Identities=19% Similarity=0.176 Sum_probs=88.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC-CC-CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2999835898747999999999984048612013-88-738068999998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS-GM-YEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~-G~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
T Consensus 141 Vil~vGVN-G~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~-gv~vI~~~~G~DpAaV------afD 212 (340)
T COG0552 141 VILFVGVN-GVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL-GVPVISGKEGADPAAV------AFD 212 (340)
T ss_pred EEEEEECC-CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHH-CCEEECCCCCCCCHHH------HHH
T ss_conf 99999348-886371799999999978986999823347899999999999995-9927825999980899------999
Q ss_pred CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHH---HHHH--CCC-----EEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 3507886422328879992276555667675308999---9974--794-----48970577650457999999998479
Q gi|254780487|r 82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDL---IERW--QFP-----IILCARTSLGTINHSLLSLETLRNRN 151 (217)
Q Consensus 82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dl---a~~l--~~~-----vILV~~~~~g~i~~~~l~~~~~~~~g 151 (217)
T Consensus 213 A---i~~Akar~~DvvliDTAGRLhnk---~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~ea- 283 (340)
T COG0552 213 A---IQAAKARGIDVVLIDTAGRLHNK---KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEA- 283 (340)
T ss_pred H---HHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC--HHHHHHHHHHHHH-
T ss_conf 9---99999769999999675544573---6689999999998464568998428999775647--5689999999875-
Q ss_pred CEEEEEEECCCC-CCCH--HHHHHHHCCCCEE--EEECCCCCCCH
Q ss_conf 907999976977-8005--9999986199899--99478888888
Q gi|254780487|r 152 INIIGIAFIGDS-MPKV--EETIVKIGRIPHL--GRLPKIDPIDP 191 (217)
Q Consensus 152 ~~i~GiIlN~~~-~~~~--~~~le~~~~ipvL--G~iP~~~~~~~ 191 (217)
T Consensus 284 v~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~ 328 (340)
T COG0552 284 VGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRP 328 (340)
T ss_pred CCCCEEEEEECCCCCCCCEEEEHHHHHCCCEEEEECCCCHHHCCC
T ss_conf 288669997024677762435088886999799857888443200