HHsearch alignment for GI: 254780487 and conserved domain: COG1419
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion].
Probab=97.35 E-value=0.0037 Score=39.23 Aligned_cols=156 Identities=19% Similarity=0.160 Sum_probs=73.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC-CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 2999835898747999999999984048-612013887380689999985578731144300145103478899985023
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYY-WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI 82 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~-~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (217)
T Consensus 205 vi~LVGP-TGVGKTTTlAKLAar~~~~~~~~kVa---iITtDtYRIGA~EQLk-~Ya~im~vp~~vv~~~~el~------ 273 (407)
T COG1419 205 VIALVGP-TGVGKTTTLAKLAARYVMLKKKKKVA---IITTDTYRIGAVEQLK-TYADIMGVPLEVVYSPKELA------ 273 (407)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCCEE---EEEECCCHHHHHHHHH-HHHHHHCCCEEEECCHHHHH------
T ss_conf 7999899-88758879999999997532576068---9971441152899999-99998699559963999999------
Q ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH----HCCCEEEEECCCCCHHHHHHH-HHHHHHHCCCEEEEE
Q ss_conf 507886422328879992276555667675308999997----479448970577650457999-999998479907999
Q gi|254780487|r 83 IDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIER----WQFPIILCARTSLGTINHSLL-SLETLRNRNINIIGI 157 (217)
Q Consensus 83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~----l~~~vILV~~~~~g~i~~~~l-~~~~~~~~g~~i~Gi 157 (217)
T Consensus 274 ---~ai~~l~~~d~ILVDTaGrs~---~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~--~f~~~~i~~~ 343 (407)
T COG1419 274 ---EAIEALRDCDVILVDTAGRSQ---YDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIK--QFSLFPIDGL 343 (407)
T ss_pred ---HHHHHHHCCCEEEEECCCCCC---CCHHHHHHHHHHHHCCCCCEEEEEEECCCC--HHHHHHHHH--HHCCCCCCEE
T ss_conf ---999985318889996899883---378999999999703566217999845764--688999999--7245886616
Q ss_pred EECCC-CCCCHHH--HHHHHCCCCEE
Q ss_conf 97697-7800599--99986199899
Q gi|254780487|r 158 AFIGD-SMPKVEE--TIVKIGRIPHL 180 (217)
Q Consensus 158 IlN~~-~~~~~~~--~le~~~~ipvL 180 (217)
T Consensus 344 I~TKlDET~s~G~~~s~~~e~~~PV~ 369 (407)
T COG1419 344 IFTKLDETTSLGNLFSLMYETRLPVS 369 (407)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 89713356763389999999689749