HHsearch alignment for GI: 254780487 and conserved domain: COG4108
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis].
Probab=95.91 E-value=0.078 Score=30.91 Aligned_cols=142 Identities=15% Similarity=0.059 Sum_probs=80.4
Q ss_pred EEEECCCCCCCHHHHHHHHH---HHHHCCC-CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99983589874799999999---9984048-6120138873806899999855787311443001451034788999850
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALV---HALNAYY-WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG 80 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~---~~l~~~~-~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~-----Y---------- 78 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFD-----Y---------- 78 (528)
T ss_pred CEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEE-----C----------
T ss_conf 0368856888851188999972303430550122257763422778888756855876578760-----3----------
Q ss_pred CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 23507886422328879992276555667675308999997479448970577650457999999998479907999976
Q gi|254780487|r 81 VIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFI 160 (217)
Q Consensus 81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN 160 (217)
T Consensus 79 -----------~~~~iNLLDTPGHe----DFSEDTYRtLtAvD-sAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNK 142 (528)
T COG4108 79 -----------ADCLVNLLDTPGHE----DFSEDTYRTLTAVD-SAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINK 142 (528)
T ss_pred -----------CCEEEECCCCCCCC----CCCHHHHHHHHHHH-EEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf -----------88488614799865----43236789998641-046898603586688999999985059846997502
Q ss_pred CCC--CC--CHHHHHHHHCCC
Q ss_conf 977--80--059999986199
Q gi|254780487|r 161 GDS--MP--KVEETIVKIGRI 177 (217)
Q Consensus 161 ~~~--~~--~~~~~le~~~~i 177 (217)
T Consensus 143 lDR~~rdP~ELLdEiE~~L~i 163 (528)
T COG4108 143 LDREGRDPLELLDEIEEELGI 163 (528)
T ss_pred CCCCCCCHHHHHHHHHHHHCC
T ss_conf 365668868999999998577