HHsearch alignment for GI: 254780487 and conserved domain: PRK00771

>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=98.77  E-value=1.4e-06  Score=60.59  Aligned_cols=176  Identities=16%  Similarity=0.117  Sum_probs=96.4

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHH--HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             299983589874799999999998404861201388738068--999998557873114430014510347889998502
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDS--KTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
T Consensus        99 Vim~vGlq-GsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~----~~v~~~~~~~~~dp~~i~~----  169 (433)
T PRK00771         99 TILLVGLQ-GSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEK----INVPFYGDPKEKDAVKIVK----  169 (433)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH----CCCCCCCCCCCCCHHHHHH----
T ss_conf             89997378-89789999999999997799467850678836899999999986----3887317889999999999----


Q ss_pred             CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             350788642232887999227655566767530899999747-9448970577650457999999998479907999976
Q gi|254780487|r   82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFI  160 (217)
Q Consensus        82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN  160 (217)
T Consensus       170 ---~a~~~-~k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q~a~~~a~~F~~-~~~i~gvIlT  242 (433)
T PRK00771        170 ---EGLEK-LKKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIG--QQASEQAKAFKE-AVGIGGIIIT  242 (433)
T ss_pred             ---HHHHH-HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHHHH-HCCCCEEEEE
T ss_conf             ---99998-4569889997765210409999999999877579768998654422--678999999987-5388737997


Q ss_pred             C-CCCCCH--HHHHHHHCCCCEE--EEECCCCC---CCHHHHH
Q ss_conf             9-778005--9999986199899--99478888---8887999
Q gi|254780487|r  161 G-DSMPKV--EETIVKIGRIPHL--GRLPKIDP---IDPDVLH  195 (217)
Q Consensus       161 ~-~~~~~~--~~~le~~~~ipvL--G~iP~~~~---~~~~~l~  195 (217)
T Consensus       243 KlDgdarGGaaLSi~~~t~~PI~FiG~GEk~~dle~F~p~r~a  285 (433)
T PRK00771        243 KLDGTAKGGGALSAVAETGAPIKFIGTGETIDDLEPFDPKRFI  285 (433)
T ss_pred             CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf             2567887305421898878995688617872148866808899