HHsearch alignment for GI: 254780487 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=98.77 E-value=1.4e-06 Score=60.59 Aligned_cols=176 Identities=16% Similarity=0.117 Sum_probs=96.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHH--HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 299983589874799999999998404861201388738068--999998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDS--KTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
T Consensus 99 Vim~vGlq-GsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~----~~v~~~~~~~~~dp~~i~~---- 169 (433)
T PRK00771 99 TILLVGLQ-GSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEK----INVPFYGDPKEKDAVKIVK---- 169 (433)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH----CCCCCCCCCCCCCHHHHHH----
T ss_conf 89997378-89789999999999997799467850678836899999999986----3887317889999999999----
Q ss_pred CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 350788642232887999227655566767530899999747-9448970577650457999999998479907999976
Q gi|254780487|r 82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFI 160 (217)
Q Consensus 82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN 160 (217)
T Consensus 170 ---~a~~~-~k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q~a~~~a~~F~~-~~~i~gvIlT 242 (433)
T PRK00771 170 ---EGLEK-LKKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIG--QQASEQAKAFKE-AVGIGGIIIT 242 (433)
T ss_pred ---HHHHH-HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHHHH-HCCCCEEEEE
T ss_conf ---99998-4569889997765210409999999999877579768998654422--678999999987-5388737997
Q ss_pred C-CCCCCH--HHHHHHHCCCCEE--EEECCCCC---CCHHHHH
Q ss_conf 9-778005--9999986199899--99478888---8887999
Q gi|254780487|r 161 G-DSMPKV--EETIVKIGRIPHL--GRLPKIDP---IDPDVLH 195 (217)
Q Consensus 161 ~-~~~~~~--~~~le~~~~ipvL--G~iP~~~~---~~~~~l~ 195 (217)
T Consensus 243 KlDgdarGGaaLSi~~~t~~PI~FiG~GEk~~dle~F~p~r~a 285 (433)
T PRK00771 243 KLDGTAKGGGALSAVAETGAPIKFIGTGETIDDLEPFDPKRFI 285 (433)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf 2567887305421898878995688617872148866808899