HHsearch alignment for GI: 254780487 and conserved domain: PRK06731

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=98.39  E-value=8.1e-05  Score=49.61  Aligned_cols=174  Identities=17%  Similarity=0.165  Sum_probs=86.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE--ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             29998358987479999999999840486120--1388738068999998557873114430014510347889998502
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI--QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv--~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
T Consensus        77 vI~lvG~-~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l----~v~~~~~~~~~~~~~~------  145 (270)
T PRK06731         77 TIALIGP-TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI----GFEVIAVRDEAAMTRA------  145 (270)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHH----CCCEECCCCHHHHHHH------
T ss_conf             8999888-9898899999999999867990899983888888999999999981----9953545887899999------


Q ss_pred             CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH---HHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             350788642232887999227655566767530899999---74794-48970577650457999999998479907999
Q gi|254780487|r   82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE---RWQFP-IILCARTSLGTINHSLLSLETLRNRNINIIGI  157 (217)
Q Consensus        82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~---~l~~~-vILV~~~~~g~i~~~~l~~~~~~~~g~~i~Gi  157 (217)
T Consensus       146 ---~~~~~~~~~~DvilIDTAGR~~~---d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~-~~~~~~~f~--~~~i~gv  216 (270)
T PRK06731        146 ---LTYFKEEARVDYILIDTAGKNYR---ASETVEEMIETMGQVEPDYICLTLSASMKSKD-MIEIITNFK--DIHIDGI  216 (270)
T ss_pred             ---HHHHHHHCCCCEEEEECCCCCCC---CHHHHHHHHHHHCCCCCCEEEEEEECCCCHHH-HHHHHHHHC--CCCCCEE
T ss_conf             ---99999976999999979998714---69999999998606389879999868777699-999999807--7999889


Q ss_pred             EECC-CCCCCHHH--HHHHHCCCCEE--EEECCC----CCCCHHHHHHH
Q ss_conf             9769-77800599--99986199899--994788----88888799999
Q gi|254780487|r  158 AFIG-DSMPKVEE--TIVKIGRIPHL--GRLPKI----DPIDPDVLHQK  197 (217)
Q Consensus       158 IlN~-~~~~~~~~--~le~~~~ipvL--G~iP~~----~~~~~~~l~~~  197 (217)
T Consensus       217 IlTKlD~ta~gG~als~~~~~~~PI~fig~Ge~VpeDi~~~~~~~la~r  265 (270)
T PRK06731        217 VFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQ  265 (270)
T ss_pred             EEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHHHH
T ss_conf             9965358997729999999988597999459997021413799999999