HHsearch alignment for GI: 254780487 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=98.39 E-value=8.1e-05 Score=49.61 Aligned_cols=174 Identities=17% Similarity=0.165 Sum_probs=86.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE--ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 29998358987479999999999840486120--1388738068999998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI--QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv--~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
T Consensus 77 vI~lvG~-~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l----~v~~~~~~~~~~~~~~------ 145 (270)
T PRK06731 77 TIALIGP-TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI----GFEVIAVRDEAAMTRA------ 145 (270)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHH----CCCEECCCCHHHHHHH------
T ss_conf 8999888-9898899999999999867990899983888888999999999981----9953545887899999------
Q ss_pred CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH---HHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 350788642232887999227655566767530899999---74794-48970577650457999999998479907999
Q gi|254780487|r 82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE---RWQFP-IILCARTSLGTINHSLLSLETLRNRNINIIGI 157 (217)
Q Consensus 82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~---~l~~~-vILV~~~~~g~i~~~~l~~~~~~~~g~~i~Gi 157 (217)
T Consensus 146 ---~~~~~~~~~~DvilIDTAGR~~~---d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~-~~~~~~~f~--~~~i~gv 216 (270)
T PRK06731 146 ---LTYFKEEARVDYILIDTAGKNYR---ASETVEEMIETMGQVEPDYICLTLSASMKSKD-MIEIITNFK--DIHIDGI 216 (270)
T ss_pred ---HHHHHHHCCCCEEEEECCCCCCC---CHHHHHHHHHHHCCCCCCEEEEEEECCCCHHH-HHHHHHHHC--CCCCCEE
T ss_conf ---99999976999999979998714---69999999998606389879999868777699-999999807--7999889
Q ss_pred EECC-CCCCCHHH--HHHHHCCCCEE--EEECCC----CCCCHHHHHHH
Q ss_conf 9769-77800599--99986199899--994788----88888799999
Q gi|254780487|r 158 AFIG-DSMPKVEE--TIVKIGRIPHL--GRLPKI----DPIDPDVLHQK 197 (217)
Q Consensus 158 IlN~-~~~~~~~~--~le~~~~ipvL--G~iP~~----~~~~~~~l~~~ 197 (217)
T Consensus 217 IlTKlD~ta~gG~als~~~~~~~PI~fig~Ge~VpeDi~~~~~~~la~r 265 (270)
T PRK06731 217 VFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQ 265 (270)
T ss_pred EEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHHHH
T ss_conf 9965358997729999999988597999459997021413799999999