HHsearch alignment for GI: 254780487 and conserved domain: PRK09435
>PRK09435 arginine/ornithine transport system ATPase; Provisional.
Probab=92.05 E-value=0.91 Score=24.21 Aligned_cols=113 Identities=22% Similarity=0.212 Sum_probs=61.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE----------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CHH
Q ss_conf 3299983589874799999999998404861201----------38873806899999855787311443001451-034
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ----------SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRT-PAS 71 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~----------~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 71 (217)
T Consensus 50 ~~iGiTG~-pG~GKStli~~l~~~~~~~g~~-v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~srg~lgg~~ 127 (325)
T PRK09435 50 LRIGITGV-PGVGKSTFIEALGMHLIEQGHK-VAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 127 (325)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 59974279-9986889999999999967985-899997899998886101038888761479984884067788867733
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf 7889998502350788642232887999227655566767530899999747944897057
Q gi|254780487|r 72 PHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART 132 (217)
Q Consensus 72 ~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~ 132 (217)
T Consensus 128 ~~~--------~~~~~~~~a~g~d~i~iETvGv-------GQ~e~~v~~~~d~~~~~~~p~ 173 (325)
T PRK09435 128 RKT--------RETMLLCEAAGFDVILVETVGV-------GQSETAVAGMVDFFLLLQLPG 173 (325)
T ss_pred HHH--------HHHHHHHHHCCCCEEEEEECCC-------CHHHHHHHHHCCEEEEEECCC
T ss_conf 549--------9999999977999899970677-------714889987426688883588