HHsearch alignment for GI: 254780487 and conserved domain: PRK11823
>PRK11823 DNA repair protein RadA; Provisional.
Probab=94.85 E-value=0.31 Score=27.18 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=78.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 299983589874799999999998404861-2013887380689999985578731144300145103478899985023
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK-PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI 82 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (217)
T Consensus 91 S~iLlgGePGIGKSTLlLQ~a~~la~~~-~vLYvSG--EES~~Qik~RA~RLg~~~~--~l~l~~et~l~~Il~~----- 160 (454)
T PRK11823 91 SVVLIGGDPGIGKSTLLLQVAAALAAGG-KVLYVSG--EESLQQIKLRAERLGLPSD--NLYLLAETNLEDILAT----- 160 (454)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEECC--CHHHHHHHHHHHHHCCCCC--CCEEEECCCHHHHHHH-----
T ss_conf 4899507998889999999999985599-5799815--0157899999997588888--7378853689999999-----
Q ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCCCC------------CCHHHHHHHHCCCEEEEECC-CCCHH------HHHHHH
Q ss_conf 507886422328879992276555667675------------30899999747944897057-76504------579999
Q gi|254780487|r 83 IDPATINPPDINDSIIIEGIGGLLVPLTTE------------YLFIDLIERWQFPIILCART-SLGTI------NHSLLS 143 (217)
Q Consensus 83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~------------~~~~dla~~l~~~vILV~~~-~~g~i------~~~~l~ 143 (217)
T Consensus 161 ----i--~~~~P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG~iAGPkvLEHmVDt 234 (454)
T PRK11823 161 ----I--EEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELTRLAKQSGIAVFLVGHVTKEGAIAGPRVLEHMVDT 234 (454)
T ss_pred ----H--HHHCCCEEEEECHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHCE
T ss_conf ----9--8609988999431115415667789978999999999999997449828999977267764661452220104
Q ss_pred HHHHH---HCCCEEEEEEECCCC
Q ss_conf 99998---479907999976977
Q gi|254780487|r 144 LETLR---NRNINIIGIAFIGDS 163 (217)
Q Consensus 144 ~~~~~---~~g~~i~GiIlN~~~ 163 (217)
T Consensus 235 Vl~fEGd~~~~~RiLR~~KNRFG 257 (454)
T PRK11823 235 VLYFEGDRHSRFRILRAVKNRFG 257 (454)
T ss_pred EEEECCCCCCCCEEEEEECCCCC
T ss_conf 68751576655024563124677