HHsearch alignment for GI: 254780487 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.91 E-value=0.013 Score=35.85 Aligned_cols=156 Identities=18% Similarity=0.206 Sum_probs=70.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf 99983589874799999999998404861201388738068999998557873114430014510347889998502350
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIID 84 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 84 (217)
T Consensus 244 IALVGP-TGVGKTTTIAKLAArf~~~~-KkVA---LITtDTYRIGAVEQLKT-YAeIMgVPV~VV~dp~eL--------~ 309 (436)
T PRK11889 244 IALIGP-TGVGKTTTLAKMAWQFHGKK-KTVG---FITTDHSRIGTVQQLQD-YVKTIGFEVIAVRDEAAM--------T 309 (436)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHCCC-CEEE---EEECCCCHHHHHHHHHH-HHHHHCCCEEEECCHHHH--------H
T ss_conf 999899-99888999999999986169-8089---99806634769999999-999849943996888999--------9
Q ss_pred HHHHHHH--HHCCEEEEECCCCCCCCCCCCCCHHHHHHHH---C-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 7886422--3288799922765556676753089999974---7-94489705776504579999999984799079999
Q gi|254780487|r 85 PATINPP--DINDSIIIEGIGGLLVPLTTEYLFIDLIERW---Q-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIA 158 (217)
Q Consensus 85 ~~~~~~~--~~~D~viIEGagg~~~~~~~~~~~~dla~~l---~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiI 158 (217)
T Consensus 310 ~AL~~lkdka~~DLILIDTAGR--S~-RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~-DL~eIi~--rF~~l~idglI 383 (436)
T PRK11889 310 RALTYFKEEARVDYILIDTAGK--NY-RASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIIT--NFKDIHIDGIV 383 (436)
T ss_pred HHHHHHHHCCCCCEEEEECCCC--CC-CCHHHHHHHHHHHHHCCCCEEEEEEECCCCHH-HHHHHHH--HHCCCCCCEEE
T ss_conf 9999876336888899929898--84-68999999999985127771699997889989-9999999--72579988289
Q ss_pred ECCCC-CCCHHH--HHHHHCCCCEE
Q ss_conf 76977-800599--99986199899
Q gi|254780487|r 159 FIGDS-MPKVEE--TIVKIGRIPHL 180 (217)
Q Consensus 159 lN~~~-~~~~~~--~le~~~~ipvL 180 (217)
T Consensus 384 fTKLDET~SlG~ILNv~~~s~LPIs 408 (436)
T PRK11889 384 FTKFDETASSGELLKIPAVSSAPIV 408 (436)
T ss_pred EEECCCCCCCHHHHHHHHHHCCCEE
T ss_conf 9713256870378889988399879