HHsearch alignment for GI: 254780487 and conserved domain: PRK12723

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.68  E-value=0.003  Score=39.82  Aligned_cols=172  Identities=17%  Similarity=0.138  Sum_probs=80.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCC----CCCC--EECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             299983589874799999999998404----8612--0138873806899999855787311443001451034788999
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAY----YWKP--IQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAE   77 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~----~~KP--v~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (217)
T Consensus       176 vi~lVGP-TGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~i-------l~vp~~v~~~~~dl~~  247 (388)
T PRK12723        176 IFILVGP-TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDI-------MGIPVKAIESFKDLKE  247 (388)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHH-------HCCCEEEECCHHHHHH
T ss_conf             8999899-8875787999999999986267677379998078758899999999999-------7880698578899999


Q ss_pred             HHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH---HH--CCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             8502350788642232887999227655566767530899999---74--794489705776504579999999984799
Q gi|254780487|r   78 IDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE---RW--QFPIILCARTSLGTINHSLLSLETLRNRNI  152 (217)
Q Consensus        78 ~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~---~l--~~~vILV~~~~~g~i~~~~l~~~~~~~~g~  152 (217)
T Consensus       248 --------~l-~~~~~~D~IlIDTAGrs~~---d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d-~~~i~~~f--~~~  312 (388)
T PRK12723        248 --------EI-TQSKDFDLVLIDTIGKSPK---DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD-IKEIFHQF--SPF  312 (388)
T ss_pred             --------HH-HHHCCCCEEEEECCCCCCC---CHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-HHHHHHHH--CCC
T ss_conf             --------99-9724999999958998856---899999999999741898459999879899999-99999984--279


Q ss_pred             EEEEEEECCC-CCCCHH--HHHHHHCCCCEEEE-----ECC-CCCCCHHHHHHHH
Q ss_conf             0799997697-780059--99998619989999-----478-8888887999999
Q gi|254780487|r  153 NIIGIAFIGD-SMPKVE--ETIVKIGRIPHLGR-----LPK-IDPIDPDVLHQKF  198 (217)
Q Consensus       153 ~i~GiIlN~~-~~~~~~--~~le~~~~ipvLG~-----iP~-~~~~~~~~l~~~~  198 (217)
T Consensus       313 ~~~~~I~TKlDEt~~~G~~l~~~~~~~~Pi~yit~GQ~VPdDie~a~p~~~~~~i  367 (388)
T PRK12723        313 SYKTVIFTKLDETTCVGNLISLIHEMRKEVSYVTDGQIVPHNISIAEPLTFIKKI  367 (388)
T ss_pred             CCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf             9984999832278986699999999888869993899683020338999999998