HHsearch alignment for GI: 254780487 and conserved domain: PRK13869

>PRK13869 plasmid-partitioning protein RepA; Provisional.
Probab=94.18  E-value=0.36  Score=26.77  Aligned_cols=32  Identities=16%  Similarity=0.160  Sum_probs=26.5

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             32999835898747999999999984048612
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKP   34 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP   34 (217)
T Consensus       122 kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RV  153 (405)
T PRK13869        122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRV  153 (405)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf             28999788877659999999999999779988