HHsearch alignment for GI: 254780487 and conserved domain: TIGR00073
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=94.65 E-value=0.091 Score=30.49 Aligned_cols=108 Identities=21% Similarity=0.290 Sum_probs=66.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEECCC-CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH-HHH
Q ss_conf 89874799999999998404861201388-7380689999985578731144300145103478899985023507-886
Q gi|254780487|r 11 DTSVGKTIFASALVHALNAYYWKPIQSGM-YEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDP-ATI 88 (217)
Q Consensus 11 ~t~vGKT~vs~~L~~~l~~~~~KPv~~G~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~ 88 (217)
T Consensus 42 spGSGKT~LiEk~~~~~~~~~K~Avi~GD~~t~~DA~RlR~~G~--------~a~~~nTGk~CHLdA~mv~G~~~~L~~~ 113 (225)
T TIGR00073 42 SPGSGKTTLIEKLIERLDDEVKIAVIEGDVQTKNDADRLRKYGV--------PAIQINTGKECHLDAHMVAGAIHALKDL 113 (225)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCC--------EEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 88611589999999984578978999755322556999986498--------6886368864440166786587554216
Q ss_pred HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 422328879992276555667675308999997479448970577
Q gi|254780487|r 89 NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTS 133 (217)
Q Consensus 89 ~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~ 133 (217)
T Consensus 114 ~ld~~~DlL~IENVGNLvCP~~FdLGe~~-------rVvllSVTE 151 (225)
T TIGR00073 114 PLDDISDLLLIENVGNLVCPADFDLGEHM-------RVVLLSVTE 151 (225)
T ss_pred CCCCCCCEEEEEECCCCEECCCCCCCCCC-------EEEEEEECC
T ss_conf 88871462688644761006731123563-------079998658