HHsearch alignment for GI: 254780487 and conserved domain: TIGR00235

>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=94.57  E-value=0.032  Score=33.36  Aligned_cols=159  Identities=18%  Similarity=0.171  Sum_probs=77.7

Q ss_pred             EEEECCCCCCCH----HHHHHHHHHHHHC-----------CCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             999835898747----9999999999840-----------4861201388738068999998557873114430014510
Q gi|254780487|r    5 LVIVGTDTSVGK----TIFASALVHALNA-----------YYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTP   69 (217)
Q Consensus         5 i~I~GT~t~vGK----T~vs~~L~~~l~~-----------~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~   69 (217)
T Consensus        13 igI~Gg-SgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~--------~~~~~r~~~NfDHP~AfD~-~L   82 (220)
T TIGR00235        13 IGISGG-SGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSD--------LEMAERKKTNFDHPDAFDN-DL   82 (220)
T ss_pred             EEECCC-CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC--------HHHHHHHCCCCCCCHHCCH-HH
T ss_conf             970176-6101567899999999998314001457750324458898873--------1246431258898003037-99


Q ss_pred             HHHHHHHHHHHCCCHH---HH---HH-H-----HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf             3478899985023507---88---64-2-----23288799922765556676753089999974794489705776504
Q gi|254780487|r   70 ASPHLAAEIDGVIIDP---AT---IN-P-----PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTI  137 (217)
Q Consensus        70 ~~~~~~~~~~~~~i~~---~~---~~-~-----~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i  137 (217)
T Consensus        83 l~~Hl~nLk~g~~~~~P~Ydyv~HtRv~~eT~~~~P~~VvIlEGi~~l~D--------~Rl~~L~dlkifvDt~~D~r-l  153 (220)
T TIGR00235        83 LYEHLKNLKNGSAIDVPVYDYVNHTRVKKETVHVEPKDVVILEGILLLTD--------ERLRDLMDLKIFVDTPLDIR-L  153 (220)
T ss_pred             HHHHHHHHHCCCEECCCCCCCCCEECCCCCCEEECCEEEEEEECCHHHHH--------HHHHHHHCCEEEEECCCHHH-H
T ss_conf             99999998468802245425410020255626873506899706188887--------99988718236774683032-5


Q ss_pred             HHHHHHHHHHHHCCCEEEEEEEC--CCCCCCHHHHHHHHCC-CCEEEEECCC
Q ss_conf             57999999998479907999976--9778005999998619-9899994788
Q gi|254780487|r  138 NHSLLSLETLRNRNINIIGIAFI--GDSMPKVEETIVKIGR-IPHLGRLPKI  186 (217)
Q Consensus       138 ~~~~l~~~~~~~~g~~i~GiIlN--~~~~~~~~~~le~~~~-ipvLG~iP~~  186 (217)
T Consensus       154 iRRl~--RD~~~RGR~~dSvI~Qy~~~V~Pm~~~FvEP~K~~AD~--IiP~g  201 (220)
T TIGR00235       154 IRRLE--RDIEERGRSLDSVIDQYRKTVRPMYLQFVEPTKQYADL--IIPEG  201 (220)
T ss_pred             HHHHH--HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCE--EECCC
T ss_conf             65656--55754289788999999985346210145501014667--62589