HHsearch alignment for GI: 254780487 and conserved domain: TIGR00235
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=94.57 E-value=0.032 Score=33.36 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=77.7
Q ss_pred EEEECCCCCCCH----HHHHHHHHHHHHC-----------CCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 999835898747----9999999999840-----------4861201388738068999998557873114430014510
Q gi|254780487|r 5 LVIVGTDTSVGK----TIFASALVHALNA-----------YYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTP 69 (217)
Q Consensus 5 i~I~GT~t~vGK----T~vs~~L~~~l~~-----------~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (217)
T Consensus 13 igI~Gg-SgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~--------~~~~~r~~~NfDHP~AfD~-~L 82 (220)
T TIGR00235 13 IGISGG-SGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSD--------LEMAERKKTNFDHPDAFDN-DL 82 (220)
T ss_pred EEECCC-CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC--------HHHHHHHCCCCCCCHHCCH-HH
T ss_conf 970176-6101567899999999998314001457750324458898873--------1246431258898003037-99
Q ss_pred HHHHHHHHHHHCCCHH---HH---HH-H-----HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf 3478899985023507---88---64-2-----23288799922765556676753089999974794489705776504
Q gi|254780487|r 70 ASPHLAAEIDGVIIDP---AT---IN-P-----PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTI 137 (217)
Q Consensus 70 ~~~~~~~~~~~~~i~~---~~---~~-~-----~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i 137 (217)
T Consensus 83 l~~Hl~nLk~g~~~~~P~Ydyv~HtRv~~eT~~~~P~~VvIlEGi~~l~D--------~Rl~~L~dlkifvDt~~D~r-l 153 (220)
T TIGR00235 83 LYEHLKNLKNGSAIDVPVYDYVNHTRVKKETVHVEPKDVVILEGILLLTD--------ERLRDLMDLKIFVDTPLDIR-L 153 (220)
T ss_pred HHHHHHHHHCCCEECCCCCCCCCEECCCCCCEEECCEEEEEEECCHHHHH--------HHHHHHHCCEEEEECCCHHH-H
T ss_conf 99999998468802245425410020255626873506899706188887--------99988718236774683032-5
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEC--CCCCCCHHHHHHHHCC-CCEEEEECCC
Q ss_conf 57999999998479907999976--9778005999998619-9899994788
Q gi|254780487|r 138 NHSLLSLETLRNRNINIIGIAFI--GDSMPKVEETIVKIGR-IPHLGRLPKI 186 (217)
Q Consensus 138 ~~~~l~~~~~~~~g~~i~GiIlN--~~~~~~~~~~le~~~~-ipvLG~iP~~ 186 (217)
T Consensus 154 iRRl~--RD~~~RGR~~dSvI~Qy~~~V~Pm~~~FvEP~K~~AD~--IiP~g 201 (220)
T TIGR00235 154 IRRLE--RDIEERGRSLDSVIDQYRKTVRPMYLQFVEPTKQYADL--IIPEG 201 (220)
T ss_pred HHHHH--HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCE--EECCC
T ss_conf 65656--55754289788999999985346210145501014667--62589