HHsearch alignment for GI: 254780487 and conserved domain: TIGR00379
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=99.97 E-value=5.6e-31 Score=213.50 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=153.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC--CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2999835898747999999999984048--61201388738068999998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYY--WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~--~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
T Consensus 1 rVviAGt~S~vGKT~I~~g~m~~L~~~~~~VQ~fKVG-PDYIDP~fH~~aTGr~sRNLDs----F~~~~----------~ 65 (464)
T TIGR00379 1 RVVIAGTSSKVGKTTISTGIMKALSRRKLEVQPFKVG-PDYIDPSFHTLATGRKSRNLDS----FFMSE----------A 65 (464)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEC-CCCCCCCCCCCCCCCCCCCCCH----HHHHH----------H
T ss_conf 9788305687547899999999986186324654425-8743788454114786667685----33028----------9
Q ss_pred CCHHHHHHHHHHC--CEEEEECCCCCCCCC-----CCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH-HCCCE
Q ss_conf 3507886422328--879992276555667-----675308999997479448970577650457999999998-47990
Q gi|254780487|r 82 IIDPATINPPDIN--DSIIIEGIGGLLVPL-----TTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLR-NRNIN 153 (217)
Q Consensus 82 ~i~~~~~~~~~~~--D~viIEGagg~~~~~-----~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~-~~g~~ 153 (217)
T Consensus 66 ~i~~~F~~~~~~~Gs~~s~IEGv~GLYdg~Py~a~~d~gStA~vAk~L~~PvvLv~n~~~L~~saaAiv~Gy~~fdp~V~ 145 (464)
T TIGR00379 66 QIKELFIRHSKGAGSDVSIIEGVRGLYDGIPYSAISDKGSTASVAKALDAPVVLVVNAKRLSRSAAAIVLGYRSFDPDVK 145 (464)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 99999998613478965797274134367688776877518899998659889999564033578677641343089831
Q ss_pred EEEEEECCCCCCCHH----HHHHHHC-CCCEEEEECCCCCCCHH----------------------HHHHHHHHHHHHHH
Q ss_conf 799997697780059----9999861-99899994788888887----------------------99999997133999
Q gi|254780487|r 154 IIGIAFIGDSMPKVE----ETIVKIG-RIPHLGRLPKIDPIDPD----------------------VLHQKFQEHFTQSL 206 (217)
Q Consensus 154 i~GiIlN~~~~~~~~----~~le~~~-~ipvLG~iP~~~~~~~~----------------------~l~~~~~~~~~~~~ 206 (217)
T Consensus 146 l~GVILN~V~~~rH~~k~k~A~e~L~Pgi~vlG~~pR~~~l~~p~RHLGLVpa~E~l~~~~~~~~~~la~~~e~~lD~~k 225 (464)
T TIGR00379 146 LKGVILNRVGSERHLEKLKTAVEKLAPGIEVLGVIPRKEDLKVPDRHLGLVPAVERLDEIIQQILDWLAEVVEKYLDLDK 225 (464)
T ss_pred EEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 78788731077446899999988636894588777367532147754653166135317899999999999997449779
Q ss_pred HHHHHHHH
Q ss_conf 99999985
Q gi|254780487|r 207 LQKYFYES 214 (217)
Q Consensus 207 l~~~~~~~ 214 (217)
T Consensus 226 l~~i~~~~ 233 (464)
T TIGR00379 226 LLEIAEKA 233 (464)
T ss_pred HHHHHCCC
T ss_conf 88874067