HHsearch alignment for GI: 254780487 and conserved domain: TIGR01281

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=98.71  E-value=1.4e-07  Score=66.92  Aligned_cols=181  Identities=18%  Similarity=0.229  Sum_probs=108.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCC-HH----------
Q ss_conf             2999835898747999999999984048612013887380689999985578731144-30014510-34----------
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIP-EKWKLRTP-AS----------   71 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~-~~~~~~~~-~~----------   71 (217)
T Consensus         2 ~lAvYGKG-GiGKSTTssNLSvA~A~~GkkVlQIGCDPKhDSTFTLtg-~L~PTvidvL~~~~yH~E~v~~eD~iy~GY~   79 (275)
T TIGR01281         2 ILAVYGKG-GIGKSTTSSNLSVALAKKGKKVLQIGCDPKHDSTFTLTG-KLIPTVIDVLDAVNYHYEDVEPEDVIYTGYG   79 (275)
T ss_pred             EEEEECCC-CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC-CCCCCEEEECCCCCCCEEECCCCCEEEECCC
T ss_conf             68886388-877004678999999846991898525788887745447-4167464422567630310333787783468


Q ss_pred             ---------HHHHHHHH----HCCCHHH-HHHHHHHCCEEEEECCCCCCCC-CCCCCCHHHHHHHHCCCEEEEECCCCCH
Q ss_conf             ---------78899985----0235078-8642232887999227655566-7675308999997479448970577650
Q gi|254780487|r   72 ---------PHLAAEID----GVIIDPA-TINPPDINDSIIIEGIGGLLVP-LTTEYLFIDLIERWQFPIILCARTSLGT  136 (217)
Q Consensus        72 ---------~~~~~~~~----~~~i~~~-~~~~~~~~D~viIEGagg~~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~  136 (217)
T Consensus        80 GVd~vEaGGPPAGsGCGGYVVGeTVKLLke~~~~~~yDVilFDVLGDVVCGGFAaPL~YAd-------~aLvva~NDFDa  152 (275)
T TIGR01281        80 GVDCVEAGGPPAGSGCGGYVVGETVKLLKELDVLDEYDVILFDVLGDVVCGGFAAPLQYAD-------YALVVAANDFDA  152 (275)
T ss_pred             CEEEEECCCCCCCCCCCCEEECCHHHHHHHCCHHHHCCEEEEEECCCEEECCCCCHHHHHC-------CEEEEECCCCHH
T ss_conf             5688714736898889874715224556652633428979996257555175464112321-------256661077217


Q ss_pred             H---HHHHHHHHHH-HH-CCCEEEEEEECCCCCC-----CHHHHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf             4---5799999999-84-7990799997697780-----0599999861998999947888888879
Q gi|254780487|r  137 I---NHSLLSLETL-RN-RNINIIGIAFIGDSMP-----KVEETIVKIGRIPHLGRLPKIDPIDPDV  193 (217)
Q Consensus       137 i---~~~~l~~~~~-~~-~g~~i~GiIlN~~~~~-----~~~~~le~~~~ipvLG~iP~~~~~~~~~  193 (217)
T Consensus       153 lFAANRia~av~~K~~~Gy~vkLAGiIaNR~~~~yGGGtdlle~F~~~~~~~~l~~~P~~d~IR~SR  219 (275)
T TIGR01281       153 LFAANRIAAAVREKAKSGYDVKLAGIIANRVDKEYGGGTDLLEKFAERVGTPVLGVVPRLDEIRRSR  219 (275)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEECCCHHHCCHHH
T ss_conf             8999999999999841797078732663121131178715689999862883220077711102010