HHsearch alignment for GI: 254780487 and conserved domain: cd02034
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.63 E-value=0.089 Score=30.56 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=25.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 299983589874799999999998404861201
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ 36 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~ 36 (217)
T Consensus 1 kia~~G-KGGvGKtt~~~~la~~l~~~g~~-vl 31 (116)
T cd02034 1 KIAITG-KGGVGKTTIAALLARYLAEKGKP-VL 31 (116)
T ss_pred CEEEEC-CCCCCHHHHHHHHHHHHHHCCCE-EE
T ss_conf 978988-99774999999999999978996-99