HHsearch alignment for GI: 254780487 and conserved domain: cd02038
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.35 E-value=6.1e-06 Score=56.64 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=86.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf 99983589874799999999998404861201388738068999998557873114430014510347889998502350
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIID 84 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 84 (217)
T Consensus 2 i~v~sgKgGvGkt~~~~nLa~~la~~G~~vll----~D~D~-------g~a----------------------------- 41 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLL----LDADL-------GLA----------------------------- 41 (139)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE----EECCC-------CCC-----------------------------
T ss_conf 89964999983999999999999978996999----98989-------996-----------------------------
Q ss_pred HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH-HCCCEEEEEEECCCC
Q ss_conf 7886422328879992276555667675308999997479448970577650457999999998-479907999976977
Q gi|254780487|r 85 PATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLR-NRNINIIGIAFIGDS 163 (217)
Q Consensus 85 ~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~-~~g~~i~GiIlN~~~ 163 (217)
T Consensus 42 ------n~~~D~viiD~~aG~~~------~~~~~~~~ad-~~lvV~tpeptSi~DAYalIK~l~~~~~~~~~~lvvN~v~ 108 (139)
T cd02038 42 ------NLDYDYIIIDTGAGISD------NVLDFFLAAD-EVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAE 108 (139)
T ss_pred ------CCCCCEEEEECCCCCCH------HHHHHHHHCC-CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf ------57999999948999877------8999999589-5799958970679999999999999639997599995689
Q ss_pred CCCHH--------HHHHHHCC--CCEEEEEC
Q ss_conf 80059--------99998619--98999947
Q gi|254780487|r 164 MPKVE--------ETIVKIGR--IPHLGRLP 184 (217)
Q Consensus 164 ~~~~~--------~~le~~~~--ipvLG~iP 184 (217)
T Consensus 109 s~~ea~~~~~~l~~v~~kfL~v~l~~lG~IP 139 (139)
T cd02038 109 SPKEGKKVFKRLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEECC
T ss_conf 9999999999999999998099831071485