HHsearch alignment for GI: 254780487 and conserved domain: cd02117

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.10  E-value=1.9e-09  Score=78.64  Aligned_cols=174  Identities=15%  Similarity=0.124  Sum_probs=95.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHH----------HHHHH-----CCCCCCCCCCCCCCC
Q ss_conf             329998358987479999999999840486120138873806899----------99985-----578731144300145
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKT----------IHRIG-----RIPKSHIIPEKWKLR   67 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~----------~~~~~-----~~~~~~~~~~~~~~~   67 (217)
T Consensus         1 ~~iaiyGK-GGVGKTTts~NLaaaLA~~G~rVl~iD~Dp~~~st~~L~g~~~~~~i~~~~~~~~~~~~~~~~~ii~~g~~   79 (212)
T cd02117           1 RQIAIYGK-GGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFG   79 (212)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf             95999889-83568778999999999869969999038998733031199778719999875278664456678996688


Q ss_pred             ----CCH-HHHHHHHHHHCC------CHHHHHHHHHHCCEEEEECCC-----CCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf             ----103-478899985023------507886422328879992276-----5556676753089999974794489705
Q gi|254780487|r   68 ----TPA-SPHLAAEIDGVI------IDPATINPPDINDSIIIEGIG-----GLLVPLTTEYLFIDLIERWQFPIILCAR  131 (217)
Q Consensus        68 ----~~~-~~~~~~~~~~~~------i~~~~~~~~~~~D~viIEGag-----g~~~~~~~~~~~~dla~~l~~~vILV~~  131 (217)
T Consensus        80 gv~~veaggp~~g~~~ag~~i~~~~~ll~~~~~~~~~~D~IliD~lGdvv~~gf~~pi~~--~~Ad-------~vlIvtt  150 (212)
T cd02117          80 GVKCVESGGPEPGVGCAGRGVITAVNLLEKEGFAEDDLDVVLYDVLGDVVCGGFAMPIRE--GKAD-------EIYIVTS  150 (212)
T ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCCC--CCCC-------EEEEECC
T ss_conf             708998899776765454117889999997410025799999965885403563343211--6688-------8999806


Q ss_pred             CCCCHH---HHHHHHHHHHHHC-CCEEEEEEECCCCCCCHHHH---HHHHCCCCEEEEECCC
Q ss_conf             776504---5799999999847-99079999769778005999---9986199899994788
Q gi|254780487|r  132 TSLGTI---NHSLLSLETLRNR-NINIIGIAFIGDSMPKVEET---IVKIGRIPHLGRLPKI  186 (217)
Q Consensus       132 ~~~g~i---~~~~l~~~~~~~~-g~~i~GiIlN~~~~~~~~~~---le~~~~ipvLG~iP~~  186 (217)
T Consensus       151 ~E~~Al~~a~~l~k~I~~~~~~~n~~l~GiI~N~~~~~~~~~~i~~f~~~~g~~vl~~IP~d  212 (212)
T cd02117         151 GEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQVIHFVPRD  212 (212)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCC
T ss_conf             93578898899999999997367981489998467888649999999998399189974899