HHsearch alignment for GI: 254780487 and conserved domain: cd02117
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.10 E-value=1.9e-09 Score=78.64 Aligned_cols=174 Identities=15% Similarity=0.124 Sum_probs=95.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHH----------HHHHH-----CCCCCCCCCCCCCCC
Q ss_conf 329998358987479999999999840486120138873806899----------99985-----578731144300145
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKT----------IHRIG-----RIPKSHIIPEKWKLR 67 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~----------~~~~~-----~~~~~~~~~~~~~~~ 67 (217)
T Consensus 1 ~~iaiyGK-GGVGKTTts~NLaaaLA~~G~rVl~iD~Dp~~~st~~L~g~~~~~~i~~~~~~~~~~~~~~~~~ii~~g~~ 79 (212)
T cd02117 1 RQIAIYGK-GGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFG 79 (212)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf 95999889-83568778999999999869969999038998733031199778719999875278664456678996688
Q ss_pred ----CCH-HHHHHHHHHHCC------CHHHHHHHHHHCCEEEEECCC-----CCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf ----103-478899985023------507886422328879992276-----5556676753089999974794489705
Q gi|254780487|r 68 ----TPA-SPHLAAEIDGVI------IDPATINPPDINDSIIIEGIG-----GLLVPLTTEYLFIDLIERWQFPIILCAR 131 (217)
Q Consensus 68 ----~~~-~~~~~~~~~~~~------i~~~~~~~~~~~D~viIEGag-----g~~~~~~~~~~~~dla~~l~~~vILV~~ 131 (217)
T Consensus 80 gv~~veaggp~~g~~~ag~~i~~~~~ll~~~~~~~~~~D~IliD~lGdvv~~gf~~pi~~--~~Ad-------~vlIvtt 150 (212)
T cd02117 80 GVKCVESGGPEPGVGCAGRGVITAVNLLEKEGFAEDDLDVVLYDVLGDVVCGGFAMPIRE--GKAD-------EIYIVTS 150 (212)
T ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCCC--CCCC-------EEEEECC
T ss_conf 708998899776765454117889999997410025799999965885403563343211--6688-------8999806
Q ss_pred CCCCHH---HHHHHHHHHHHHC-CCEEEEEEECCCCCCCHHHH---HHHHCCCCEEEEECCC
Q ss_conf 776504---5799999999847-99079999769778005999---9986199899994788
Q gi|254780487|r 132 TSLGTI---NHSLLSLETLRNR-NINIIGIAFIGDSMPKVEET---IVKIGRIPHLGRLPKI 186 (217)
Q Consensus 132 ~~~g~i---~~~~l~~~~~~~~-g~~i~GiIlN~~~~~~~~~~---le~~~~ipvLG~iP~~ 186 (217)
T Consensus 151 ~E~~Al~~a~~l~k~I~~~~~~~n~~l~GiI~N~~~~~~~~~~i~~f~~~~g~~vl~~IP~d 212 (212)
T cd02117 151 GEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 93578898899999999997367981489998467888649999999998399189974899