HHsearch alignment for GI: 254780487 and conserved domain: cd03111
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.89 E-value=0.057 Score=31.76 Aligned_cols=101 Identities=20% Similarity=0.181 Sum_probs=62.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCC-CCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99983589874799999999998404-86120138873806899999855787311443001451034788999850235
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAY-YWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~-~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
T Consensus 2 i~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~l----vDldlq------------------------------------- 40 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLL----VDLDLQ------------------------------------- 40 (106)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEE----EECCCC-------------------------------------
T ss_conf 899728998668999999999999841993899----965467-------------------------------------
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCE---EEEEEEC
Q ss_conf 0788642232887999227655566767530899999747944897057765045799999999847990---7999976
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNIN---IIGIAFI 160 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~---i~GiIlN 160 (217)
T Consensus 41 --------fGdd~VVvD~~~~~~~~~~~al~~ad-------~i~lv~~~~lp~lrn~kr~l~~l~~l~~~~~~ki~lVvN 105 (106)
T cd03111 41 --------FGDDYVVVDLGRSLDEVSLAALDQAD-------RVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLN 105 (106)
T ss_pred --------CCCCEEEECCCCCCCHHHHHHHHHCC-------EEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf --------79978999186553889999998679-------799980677489997999999999849997365699857
Q ss_pred C
Q ss_conf 9
Q gi|254780487|r 161 G 161 (217)
Q Consensus 161 ~ 161 (217)
T Consensus 106 R 106 (106)
T cd03111 106 R 106 (106)
T ss_pred C
T ss_conf 9