Query         gi|254780487|ref|YP_003064900.1| dithiobiotin synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 217
No_of_seqs    119 out of 2137
Neff          8.3 
Searched_HMMs 39220
Date          Sun May 29 17:18:00 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780487.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK00090 bioD dithiobiotin syn 100.0       0       0  317.6  21.7  204    4-211     1-222 (223)
  2 PRK12374 putative dithiobiotin 100.0       0       0  309.5  18.8  205    1-209     1-222 (231)
  3 COG0132 BioD Dethiobiotin synt 100.0 1.4E-45       0  306.8  18.9  192    1-192     1-210 (223)
  4 TIGR00347 bioD dethiobiotin sy 100.0 7.9E-39   2E-43  262.7  13.0  155    6-160     1-187 (187)
  5 cd03109 DTBS Dethiobiotin synt 100.0 3.1E-33   8E-38  227.6  12.8  124    5-184     1-134 (134)
  6 PRK01077 cobyrinic acid a,c-di 100.0 2.3E-31   6E-36  215.9  18.9  196    1-213     1-228 (451)
  7 COG1797 CobB Cobyrinic acid a, 100.0   5E-31 1.3E-35  213.8  19.2  196    3-213     1-226 (451)
  8 TIGR00379 cobB cobyrinic acid  100.0 5.6E-31 1.4E-35  213.5  15.5  196    4-214     1-233 (464)
  9 PRK13896 cobyrinic acid a,c-di 100.0 6.1E-30 1.6E-34  207.0  20.3  193    1-213     1-218 (432)
 10 TIGR00313 cobQ cobyric acid sy 100.0 7.5E-31 1.9E-35  212.7  14.6  185    5-189     1-227 (502)
 11 PRK00784 cobyric acid synthase 100.0 2.1E-29 5.3E-34  203.7  17.3  190    1-190     2-232 (492)
 12 PRK05632 phosphate acetyltrans 100.0 1.3E-26 3.3E-31  186.2  16.8  201    2-205     1-230 (702)
 13 COG1492 CobQ Cobyric acid synt  99.9 1.6E-22 4.1E-27  160.5  10.7  189    1-190     1-231 (486)
 14 COG0857 Pta BioD-like N-termin  99.8 1.4E-17 3.7E-22  129.5  11.9  192    1-193     1-210 (354)
 15 PRK06278 cobyrinic acid a,c-di  99.6 3.4E-15 8.7E-20  114.6   9.8  165    2-182   244-422 (482)
 16 pfam01656 CbiA CobQ/CobB/MinD/  99.4 6.1E-12 1.6E-16   94.2  10.6  179    5-190     1-211 (212)
 17 TIGR01969 minD_arch cell divis  99.3 6.2E-12 1.6E-16   94.2   8.0  176    4-190     2-202 (258)
 18 CHL00175 minD septum-site dete  99.1 7.8E-10   2E-14   81.1  11.0  181    1-189    12-220 (279)
 19 PRK13233 nifH nitrogenase redu  99.1 3.8E-09 9.8E-14   76.7  13.4  181    1-189     1-217 (275)
 20 cd02117 NifH_like This family   99.1 1.9E-09 4.8E-14   78.6  11.4  174    3-186     1-212 (212)
 21 cd03110 Fer4_NifH_child This p  99.1 2.2E-09 5.5E-14   78.3  11.1  160    4-184     1-179 (179)
 22 PRK13185 chlL protochlorophyll  99.1 1.6E-09 4.1E-14   79.1  10.1  178    1-189     1-211 (269)
 23 cd02032 Bchl_like This family   99.0 3.3E-09 8.4E-14   77.1  10.7  175    4-189     2-209 (267)
 24 PRK13231 nitrogenase reductase  99.0 8.6E-09 2.2E-13   74.5  12.4  178    1-189     1-208 (264)
 25 cd02037 MRP-like MRP (Multiple  99.0   8E-08   2E-12   68.4  15.0  153    5-186     2-168 (169)
 26 TIGR01007 eps_fam capsular exo  98.9 1.1E-08 2.8E-13   73.9   9.8  156    3-164    20-195 (207)
 27 cd02036 MinD Bacterial cell di  98.9 1.9E-08 4.9E-13   72.3  10.6  146    5-187     2-154 (179)
 28 PRK13235 nifH nitrogenase redu  98.9 4.4E-08 1.1E-12   70.1  12.4  180    1-189     1-216 (274)
 29 PRK13232 nifH nitrogenase redu  98.9 4.5E-08 1.2E-12   70.0  12.2  182    3-189     2-214 (273)
 30 PRK11670 putative ATPase; Prov  98.9 1.8E-08 4.7E-13   72.4  10.2  174    2-188   107-318 (369)
 31 PRK09841 cryptic autophosphory  98.9 1.3E-07 3.3E-12   67.2  14.3  157    2-164   531-705 (726)
 32 PRK13234 nifH nitrogenase redu  98.9 2.8E-07 7.1E-12   65.0  15.1  175    3-187     5-216 (293)
 33 PRK11519 tyrosine kinase; Prov  98.8 2.7E-07   7E-12   65.1  13.9  153    3-163   527-699 (720)
 34 CHL00072 chlL photochlorophyll  98.8 8.9E-08 2.3E-12   68.1  10.9  175    4-189     2-209 (271)
 35 COG0541 Ffh Signal recognition  98.8 2.1E-06 5.3E-11   59.5  17.1  177    4-195   102-290 (451)
 36 TIGR03029 EpsG chain length de  98.8 2.6E-07 6.5E-12   65.3  12.3  152    3-161   104-274 (274)
 37 COG0455 flhG Antiactivator of   98.8 2.1E-07 5.5E-12   65.7  11.9  180    1-187     1-206 (262)
 38 PRK00771 signal recognition pa  98.8 1.4E-06 3.6E-11   60.6  16.1  176    4-195    99-285 (433)
 39 PRK13236 nitrogenase reductase  98.8 6.4E-07 1.6E-11   62.8  14.2  176    3-188     7-219 (295)
 40 COG0489 Mrp ATPases involved i  98.8 2.8E-07 7.1E-12   65.1  12.3  174    3-187    58-259 (265)
 41 PRK10818 cell division inhibit  98.7 1.1E-07 2.8E-12   67.5   9.8  181    1-189     1-217 (270)
 42 TIGR00959 ffh signal recogniti  98.7 1.2E-06   3E-11   61.1  14.8  195    4-214   104-330 (439)
 43 TIGR01968 minD_bact septum sit  98.7 1.2E-07   3E-12   67.4   9.3  179    2-189     1-216 (272)
 44 PRK10867 signal recognition pa  98.7 4.9E-06 1.2E-10   57.2  17.6  196    4-213   102-322 (453)
 45 TIGR01281 DPOR_bchL light-inde  98.7 1.4E-07 3.6E-12   66.9   9.5  181    4-193     2-219 (275)
 46 pfam07755 DUF1611 Protein of u  98.7 1.3E-06 3.2E-11   60.9  13.6  162    2-186   113-295 (302)
 47 PRK13230 nitrogenase reductase  98.7 3.9E-07   1E-11   64.1  10.8  180    1-189     1-227 (292)
 48 cd02040 NifH NifH gene encodes  98.7 2.3E-06   6E-11   59.2  14.3  183    1-189     1-215 (270)
 49 cd00550 ArsA_ATPase Oxyanion-t  98.6 2.8E-06 7.1E-11   58.8  14.6  178    3-187     1-240 (254)
 50 COG2894 MinD Septum formation   98.6 1.4E-07 3.5E-12   67.0   6.3  176    1-188     1-215 (272)
 51 pfam00142 Fer4_NifH 4Fe-4S iro  98.6 2.1E-06 5.4E-11   59.5  12.3  181    4-189     2-214 (269)
 52 cd02033 BchX Chlorophyllide re  98.6 9.7E-07 2.5E-11   61.6  10.4  181    3-193    32-248 (329)
 53 COG1149 MinD superfamily P-loo  98.5 1.5E-06 3.8E-11   60.5  10.4   92   89-189   159-252 (284)
 54 PRK10416 cell division protein  98.5 1.9E-05 4.8E-10   53.6  15.8  169    4-190   297-483 (499)
 55 TIGR03018 pepcterm_TyrKin exop  98.5 5.3E-06 1.4E-10   57.0  12.7  149    3-160    36-207 (207)
 56 TIGR02016 BchX chlorophyllide   98.5 6.5E-06 1.7E-10   56.5  12.5  181    4-190     2-222 (355)
 57 COG3367 Uncharacterized conser  98.4 6.7E-06 1.7E-10   56.4  11.5  161    2-185   148-326 (339)
 58 pfam02374 ArsA_ATPase Anion-tr  98.4 6.8E-05 1.7E-09   50.1  16.2   74  124-198   207-299 (304)
 59 PRK06731 flhF flagellar biosyn  98.4 8.1E-05 2.1E-09   49.6  16.5  174    4-197    77-265 (270)
 60 cd02035 ArsA ArsA ATPase funct  98.4 7.3E-06 1.9E-10   56.1  10.8   71   91-164   111-182 (217)
 61 TIGR03371 cellulose_yhjQ cellu  98.4 8.5E-06 2.2E-10   55.8  11.0  179    1-189     1-211 (246)
 62 cd02038 FleN-like FleN is a me  98.3 6.1E-06 1.6E-10   56.6   9.9  127    5-184     2-139 (139)
 63 COG3640 CooC CO dehydrogenase   98.3 4.3E-05 1.1E-09   51.4  14.1   90   93-189   133-223 (255)
 64 KOG3022 consensus               98.3 1.2E-05   3E-10   54.9  10.5  181    3-187    48-259 (300)
 65 COG1348 NifH Nitrogenase subun  98.2 0.00019 4.7E-09   47.3  14.7  177    3-189     2-216 (278)
 66 KOG0780 consensus               98.0 9.4E-05 2.4E-09   49.2  10.4  175    4-190   103-283 (483)
 67 cd03115 SRP The signal recogni  98.0 0.00051 1.3E-08   44.6  13.8  160    4-180     2-170 (173)
 68 TIGR01425 SRP54_euk signal rec  98.0 4.9E-05 1.2E-09   51.0   8.3  170    4-189   123-302 (453)
 69 PRK12726 flagellar biosynthesi  98.0 0.00099 2.5E-08   42.8  14.8  158    3-180   207-373 (407)
 70 PHA02518 ParA-like protein; Pr  97.9 0.00027 6.9E-09   46.3  11.3  158    3-185     1-171 (211)
 71 pfam00448 SRP54 SRP54-type pro  97.9 0.00083 2.1E-08   43.3  13.7  159    4-180     3-171 (196)
 72 COG2403 Predicted GTPase [Gene  97.9 3.4E-05 8.6E-10   52.0   5.9   96    4-110   128-241 (449)
 73 TIGR00064 ftsY signal recognit  97.9 0.00022 5.5E-09   46.9   9.9  172    4-189    84-271 (284)
 74 pfam06564 YhjQ YhjQ protein. T  97.9 0.00016   4E-09   47.8   8.9  175    1-189     1-205 (244)
 75 COG0552 FtsY Signal recognitio  97.8 0.00028 7.1E-09   46.2  10.0  171    4-191   141-328 (340)
 76 cd01983 Fer4_NifH The Fer4_Nif  97.8 9.2E-05 2.3E-09   49.3   7.4   96    4-160     1-99  (99)
 77 PRK12723 flagellar biosynthesi  97.7   0.003 7.5E-08   39.8  13.2  172    4-198   176-367 (388)
 78 TIGR01287 nifH nitrogenase iro  97.6  0.0016 4.1E-08   41.5  11.0  176    3-189     1-217 (278)
 79 PRK05703 flhF flagellar biosyn  97.5 0.00059 1.5E-08   44.2   8.1  157    3-180   211-376 (412)
 80 pfam07015 VirC1 VirC1 protein.  97.5  0.0027 6.8E-08   40.1  11.4  139    1-164     1-152 (231)
 81 PRK13849 putative crown gall t  97.5   0.004   1E-07   39.0  12.0  156    1-180     1-172 (231)
 82 TIGR00750 lao LAO/AO transport  97.5 0.00057 1.4E-08   44.3   7.6  119    3-131    39-167 (333)
 83 PRK10751 molybdopterin-guanine  97.5 0.00053 1.3E-08   44.5   7.1  157    1-204     1-167 (170)
 84 cd03116 MobB Molybdenum is an   97.5 0.00049 1.3E-08   44.7   6.9  126    3-162     2-136 (159)
 85 PRK10037 cell division protein  97.4  0.0046 1.2E-07   38.6  11.3   32    1-33      1-32  (250)
 86 TIGR00176 mobB molybdopterin-g  97.4 0.00031   8E-09   45.9   4.9   93    5-103     2-106 (165)
 87 COG0003 ArsA Predicted ATPase   97.4  0.0076 1.9E-07   37.3  11.8   42  123-164   207-248 (322)
 88 COG1419 FlhF Flagellar GTP-bin  97.3  0.0037 9.3E-08   39.2  10.1  156    4-180   205-369 (407)
 89 PRK12724 flagellar biosynthesi  97.3   0.005 1.3E-07   38.4  10.7  182    4-211   225-424 (432)
 90 PRK06995 flhF flagellar biosyn  97.2   0.002   5E-08   40.9   7.8  154    5-180   179-342 (404)
 91 COG1763 MobB Molybdopterin-gua  97.1   0.001 2.7E-08   42.7   4.9   94    1-103     1-102 (161)
 92 COG1192 Soj ATPases involved i  97.0  0.0043 1.1E-07   38.8   7.9   35    1-35      1-36  (259)
 93 COG1618 Predicted nucleotide k  97.0  0.0016   4E-08   41.5   5.6   32    1-33      4-35  (179)
 94 PRK11889 flhF flagellar biosyn  96.9   0.013 3.2E-07   35.9   9.4  156    5-180   244-408 (436)
 95 cd02042 ParA ParA and ParB of   96.9  0.0038 9.6E-08   39.2   6.6   97    5-160     2-104 (104)
 96 pfam09140 MipZ ATPase MipZ. Mi  96.9  0.0057 1.5E-07   38.0   7.4   97    5-105     3-110 (261)
 97 PRK05380 pyrG CTP synthetase;   96.7   0.052 1.3E-06   32.0  14.3  181    1-185     1-237 (534)
 98 PRK13886 conjugal transfer pro  96.6   0.059 1.5E-06   31.7  12.3  147    1-161     1-154 (241)
 99 PRK04220 2-phosphoglycerate ki  96.6  0.0058 1.5E-07   38.0   5.5   24    4-28     94-117 (306)
100 TIGR03499 FlhF flagellar biosy  96.4  0.0049 1.3E-07   38.4   4.5   72  126-203   197-272 (282)
101 COG0378 HypB Ni2+-binding GTPa  96.4   0.012   3E-07   36.1   6.3   99    4-112    15-115 (202)
102 COG0572 Udk Uridine kinase [Nu  96.4   0.028 7.2E-07   33.7   8.2  144    5-172    11-177 (218)
103 PRK12727 flagellar biosynthesi  96.4   0.017 4.4E-07   35.0   6.9  157    5-181   351-514 (557)
104 pfam00485 PRK Phosphoribulokin  96.3   0.024 6.1E-07   34.1   7.5  119    5-132     2-139 (196)
105 cd03114 ArgK-like The function  96.1   0.099 2.5E-06   30.3   9.8  114    5-135     2-125 (148)
106 cd02028 UMPK_like Uridine mono  96.1   0.015 3.9E-07   35.3   5.4   30    5-35      2-31  (179)
107 KOG2749 consensus               96.0   0.027   7E-07   33.8   6.4  129    2-133   103-249 (415)
108 TIGR00455 apsK adenylylsulfate  95.9  0.0035 8.9E-08   39.4   1.7   31    4-35     21-51  (187)
109 PRK00091 miaA tRNA delta(2)-is  95.9  0.0065 1.7E-07   37.7   2.9   25    3-28      5-29  (304)
110 COG4108 PrfC Peptide chain rel  95.9   0.078   2E-06   30.9   8.5  142    5-177    14-163 (528)
111 cd03111 CpaE_like This protein  95.9   0.057 1.5E-06   31.8   7.7  101    5-161     2-106 (106)
112 COG1703 ArgK Putative periplas  95.9    0.14 3.6E-06   29.3  16.6  116    4-136    53-178 (323)
113 TIGR01087 murD UDP-N-acetylmur  95.8   0.012 3.1E-07   36.0   3.9   35    2-39    110-144 (476)
114 PRK12338 hypothetical protein;  95.8   0.037 9.5E-07   32.9   6.3   28    1-29      1-30  (320)
115 PRK04040 adenylate kinase; Pro  95.8    0.16   4E-06   29.0   9.5  118    1-135     1-122 (189)
116 TIGR00763 lon ATP-dependent pr  95.7   0.024 6.2E-07   34.1   5.2   37    4-42    452-488 (941)
117 PRK09825 idnK D-gluconate kina  95.6   0.025 6.3E-07   34.1   4.9   59    1-64      1-60  (176)
118 cd02026 PRK Phosphoribulokinas  95.6   0.087 2.2E-06   30.6   7.7  115    5-133     2-127 (273)
119 TIGR01085 murE UDP-N-acetylmur  95.6    0.01 2.5E-07   36.5   2.8   27    4-33     90-116 (494)
120 TIGR02173 cyt_kin_arch cytidyl  95.6   0.015 3.9E-07   35.3   3.8  101    4-131     2-108 (173)
121 COG4028 Predicted P-loop ATPas  95.6  0.0089 2.3E-07   36.8   2.5   60    4-64      2-78  (271)
122 PRK02472 murD UDP-N-acetylmura  95.4   0.033 8.3E-07   33.3   5.1   34    3-39    113-146 (450)
123 COG1341 Predicted GTPase or GT  95.4   0.051 1.3E-06   32.1   6.0  126    4-131    75-208 (398)
124 TIGR01420 pilT_fam twitching m  95.4   0.013 3.4E-07   35.7   3.1   29    4-33    129-157 (350)
125 PRK09270 frcK putative fructos  95.4   0.045 1.1E-06   32.4   5.7  117    5-131    37-172 (230)
126 PTZ00301 uridine kinase; Provi  95.4   0.036 9.1E-07   33.0   5.2  164    1-187     1-190 (210)
127 PRK01710 murD UDP-N-acetylmura  95.4   0.078   2E-06   30.9   6.8   34    3-39    118-151 (458)
128 cd02023 UMPK Uridine monophosp  95.3   0.044 1.1E-06   32.5   5.4   24    5-29      2-25  (198)
129 PRK03839 putative kinase; Prov  95.3    0.02 5.2E-07   34.5   3.6   24    3-27      1-24  (180)
130 cd01121 Sms Sms (bacterial rad  95.2    0.24 6.1E-06   27.9  11.2  145    4-163    83-250 (372)
131 PRK02705 murD UDP-N-acetylmura  95.2    0.12 2.9E-06   29.8   7.2   34    3-39    110-143 (459)
132 COG2019 AdkA Archaeal adenylat  95.2    0.23 5.9E-06   27.9   8.7  117    1-135     1-121 (189)
133 PRK07429 phosphoribulokinase;   95.1    0.15 3.7E-06   29.2   7.6  117    1-131     4-134 (331)
134 cd02025 PanK Pantothenate kina  95.1   0.046 1.2E-06   32.4   4.9  117    5-130     2-137 (220)
135 PRK04663 murD UDP-N-acetylmura  95.0   0.098 2.5E-06   30.3   6.5   34    3-39    109-142 (438)
136 PRK04308 murD UDP-N-acetylmura  95.0   0.032 8.2E-07   33.3   3.9   34    3-39    111-144 (445)
137 PRK13768 GTPase; Provisional    95.0    0.29 7.3E-06   27.4  10.8  146    1-161     1-171 (253)
138 pfam03308 ArgK ArgK protein. T  94.9     0.3 7.5E-06   27.3  18.0  113    3-132    30-153 (267)
139 PRK02006 murD UDP-N-acetylmura  94.9    0.19 4.8E-06   28.5   7.7   34    3-39    123-156 (501)
140 PRK11823 DNA repair protein Ra  94.8    0.31 7.8E-06   27.2  11.4  144    4-163    91-257 (454)
141 PRK03369 murD UDP-N-acetylmura  94.8   0.039   1E-06   32.8   4.0   34    3-39    118-151 (487)
142 PRK00141 murD UDP-N-acetylmura  94.8   0.041   1E-06   32.7   4.0   32    5-39    126-157 (476)
143 PRK05480 uridine kinase; Provi  94.8   0.043 1.1E-06   32.5   4.1   28    1-29      3-32  (209)
144 TIGR01005 eps_transp_fam exopo  94.8    0.32 8.2E-06   27.1   9.6  154    4-167   563-742 (778)
145 PRK05632 phosphate acetyltrans  94.7    0.33 8.5E-06   26.9  10.1  103  107-212   212-367 (702)
146 PRK13695 putative NTPase; Prov  94.7   0.048 1.2E-06   32.2   4.1   28    1-29      2-29  (174)
147 PRK05800 cobU adenosylcobinami  94.7    0.23   6E-06   27.9   7.7  130    2-148     1-142 (170)
148 TIGR00073 hypB hydrogenase acc  94.7   0.091 2.3E-06   30.5   5.5  108   11-133    42-151 (225)
149 PRK01438 murD UDP-N-acetylmura  94.6   0.041   1E-06   32.7   3.6   32    5-39    125-156 (481)
150 TIGR00235 udk uridine kinase;   94.6   0.032 8.1E-07   33.4   3.0  159    5-186    13-201 (220)
151 COG0771 MurD UDP-N-acetylmuram  94.5   0.086 2.2E-06   30.6   5.1   35    2-39    110-144 (448)
152 PRK08006 replicative DNA helic  94.5    0.37 9.5E-06   26.7   9.8   25    3-27    224-248 (471)
153 PRK03806 murD UDP-N-acetylmura  94.5    0.21 5.2E-06   28.3   7.0   34    3-39    106-139 (438)
154 pfam06414 Zeta_toxin Zeta toxi  94.4    0.24   6E-06   27.9   7.2   32    3-35     13-44  (191)
155 COG1936 Predicted nucleotide k  94.4   0.033 8.4E-07   33.3   2.8   21    3-24      1-21  (180)
156 PRK06835 DNA replication prote  94.4    0.39 9.9E-06   26.5   8.5  111    3-141   184-297 (330)
157 PRK10463 hydrogenase nickel in  94.4    0.13 3.3E-06   29.5   5.8   92   10-113   111-204 (290)
158 TIGR01313 therm_gnt_kin carboh  94.4   0.077   2E-06   30.9   4.6   60    5-65      1-61  (175)
159 PRK03731 aroL shikimate kinase  94.3   0.047 1.2E-06   32.3   3.4   31    1-32      1-31  (172)
160 PRK01368 murD UDP-N-acetylmura  94.3   0.056 1.4E-06   31.8   3.8   34    3-39    105-138 (450)
161 PRK08233 hypothetical protein;  94.3    0.24 6.1E-06   27.9   7.0   24    4-28      5-28  (182)
162 pfam03029 ATP_bind_1 Conserved  94.3    0.42 1.1E-05   26.3   9.0  144    7-162     1-164 (234)
163 PRK13869 plasmid-partitioning   94.2    0.36 9.1E-06   26.8   7.7   32    3-34    122-153 (405)
164 PRK08118 topology modulation p  94.1   0.062 1.6E-06   31.5   3.7   27    1-29      1-27  (167)
165 PRK08840 replicative DNA helic  94.1    0.44 1.1E-05   26.2   9.4   33    4-36    218-250 (464)
166 pfam03205 MobB Molybdopterin g  94.1   0.075 1.9E-06   31.0   4.1   31    4-35      2-32  (122)
167 COG1072 CoaA Panthothenate kin  94.1    0.15 3.8E-06   29.2   5.6   30    4-34     84-113 (283)
168 PRK00421 murC UDP-N-acetylmura  94.1   0.052 1.3E-06   32.0   3.2   29    3-34    109-137 (459)
169 PRK01390 murD UDP-N-acetylmura  94.0   0.084 2.1E-06   30.7   4.2   33    3-38    115-147 (457)
170 PRK08694 consensus              94.0    0.41 1.1E-05   26.4   7.8   33    4-36    219-251 (468)
171 PRK04690 murD UDP-N-acetylmura  94.0   0.088 2.2E-06   30.6   4.2   34    3-39    116-149 (468)
172 COG0324 MiaA tRNA delta(2)-iso  93.9    0.34 8.7E-06   26.9   7.2   27    2-29      3-29  (308)
173 TIGR01082 murC UDP-N-acetylmur  93.8   0.067 1.7E-06   31.3   3.3   29    3-34    109-137 (491)
174 PRK00889 adenylylsulfate kinas  93.8    0.11 2.8E-06   30.0   4.4   34    1-35      1-36  (175)
175 TIGR03600 phage_DnaB phage rep  93.7    0.53 1.4E-05   25.7   8.7   23    4-26    195-217 (421)
176 PRK09361 radB DNA repair and r  93.7    0.54 1.4E-05   25.6  11.6  120    4-131    25-159 (224)
177 cd02034 CooC The accessory pro  93.6   0.089 2.3E-06   30.6   3.7   31    4-36      1-31  (116)
178 pfam02283 CobU Cobinamide kina  93.6    0.17 4.3E-06   28.8   5.1  129    5-151     1-142 (166)
179 PRK07263 consensus              93.6    0.56 1.4E-05   25.5   7.9   24    4-27    204-227 (453)
180 PRK00683 murD UDP-N-acetylmura  93.5    0.07 1.8E-06   31.2   3.0   34    3-39    103-136 (418)
181 PRK03803 murD UDP-N-acetylmura  93.5     0.1 2.6E-06   30.2   3.8   34    3-39    110-143 (448)
182 PRK12339 2-phosphoglycerate ki  93.4    0.35   9E-06   26.8   6.5   27    1-28      1-28  (197)
183 PRK06761 hypothetical protein;  93.3    0.11 2.9E-06   29.9   3.8   31    1-32      1-31  (281)
184 TIGR02759 TraD_Ftype type IV c  93.3     0.1 2.6E-06   30.2   3.5   32    3-35    209-240 (613)
185 cd01122 GP4d_helicase GP4d_hel  93.3    0.63 1.6E-05   25.2   9.4   30    4-33     31-61  (271)
186 cd01884 EF_Tu EF-Tu subfamily.  93.3    0.62 1.6E-05   25.3   7.6   64   93-163    64-129 (195)
187 PRK06217 hypothetical protein;  93.2     0.1 2.6E-06   30.2   3.5   27    3-30      2-28  (185)
188 KOG2004 consensus               93.2    0.33 8.5E-06   27.0   6.1   30    3-33    439-468 (906)
189 PRK06904 replicative DNA helic  93.1    0.67 1.7E-05   25.1  10.0   33    4-36    222-254 (472)
190 cd01124 KaiC KaiC is a circadi  93.1    0.61 1.6E-05   25.3   7.3  124    5-132     2-139 (187)
191 PRK08116 hypothetical protein;  93.0    0.68 1.7E-05   25.0   8.1  110    3-139   109-221 (262)
192 TIGR01448 recD_rel helicase, R  93.0    0.48 1.2E-05   26.0   6.7   25    3-27    365-389 (769)
193 PRK05541 adenylylsulfate kinas  93.0    0.14 3.5E-06   29.3   3.9   31    4-35      9-39  (176)
194 pfam10609 ParA ParA/MinD ATPas  93.0    0.52 1.3E-05   25.7   6.9   61   95-161     2-63  (81)
195 cd01394 radB RadB. The archaea  93.0     0.7 1.8E-05   24.9  10.0  119    5-131    22-156 (218)
196 PRK13700 conjugal transfer pro  92.8    0.17 4.2E-06   28.9   4.1   32    3-35    186-217 (732)
197 PRK11545 gntK gluconate kinase  92.8     0.2 5.2E-06   28.3   4.5   56    4-64     10-65  (177)
198 PRK05748 replicative DNA helic  92.7    0.76 1.9E-05   24.7   9.0   24    4-27    204-227 (448)
199 pfam03266 DUF265 Protein of un  92.7    0.15 3.9E-06   29.1   3.8   28    4-32      1-28  (168)
200 COG2805 PilT Tfp pilus assembl  92.6    0.32 8.3E-06   27.0   5.3   32    4-36    127-158 (353)
201 COG1102 Cmk Cytidylate kinase   92.5    0.36 9.2E-06   26.7   5.6   99    4-126     2-101 (179)
202 PRK09183 transposase/IS protei  92.5    0.16 4.2E-06   28.9   3.8  132    4-164   103-241 (258)
203 pfam08245 Mur_ligase_M Mur lig  92.5    0.81 2.1E-05   24.5  11.9   29    7-38      1-29  (188)
204 TIGR02397 dnaX_nterm DNA polym  92.4    0.11 2.8E-06   30.0   2.8   27    3-30     37-63  (363)
205 PRK07261 topology modulation p  92.4    0.16 4.1E-06   29.0   3.5   26    3-29      1-26  (171)
206 PRK09165 replicative DNA helic  92.3    0.59 1.5E-05   25.4   6.4   22    4-25    206-227 (484)
207 COG0773 MurC UDP-N-acetylmuram  92.3    0.14 3.6E-06   29.3   3.2   29    3-34    108-136 (459)
208 COG0529 CysC Adenylylsulfate k  92.2    0.24 6.2E-06   27.8   4.4   30    4-34     25-54  (197)
209 TIGR00174 miaA tRNA delta(2)-i  92.1    0.12   3E-06   29.8   2.6   26    4-30      1-26  (307)
210 PRK09435 arginine/ornithine tr  92.0    0.91 2.3E-05   24.2  18.3  113    3-132    50-173 (325)
211 TIGR02768 TraA_Ti Ti-type conj  92.0    0.69 1.8E-05   25.0   6.5  107    7-138   435-545 (888)
212 TIGR02928 TIGR02928 orc1/cdc6   92.0    0.18 4.5E-06   28.7   3.4   26    3-29     44-69  (383)
213 cd00984 DnaB_C DnaB helicase C  91.9    0.94 2.4E-05   24.1   9.3   30    4-33     14-44  (242)
214 PRK03846 adenylylsulfate kinas  91.9    0.26 6.7E-06   27.6   4.2   32    3-35     25-56  (198)
215 TIGR00503 prfC peptide chain r  91.9     0.5 1.3E-05   25.8   5.6  124    4-158    12-139 (530)
216 PRK10846 bifunctional folylpol  91.9    0.95 2.4E-05   24.1   7.0   28    3-33     50-77  (416)
217 pfam06418 CTP_synth_N CTP synt  91.8    0.97 2.5E-05   24.1  14.1  182    2-185     1-237 (275)
218 cd02029 PRK_like Phosphoribulo  91.8    0.97 2.5E-05   24.1   8.3   31    5-36      2-32  (277)
219 pfam01695 IstB IstB-like ATP b  91.8    0.25 6.3E-06   27.8   3.9   29    4-33     49-77  (178)
220 TIGR03007 pepcterm_ChnLen poly  91.7    0.38 9.7E-06   26.6   4.9   27  166-192   455-481 (510)
221 pfam01583 APS_kinase Adenylyls  91.7    0.25 6.4E-06   27.7   3.9   31    4-35      4-34  (157)
222 PRK06526 transposase; Provisio  91.7    0.23 5.9E-06   27.9   3.8  131    4-164   100-236 (254)
223 cd02021 GntK Gluconate kinase   91.7    0.29 7.4E-06   27.3   4.3   27    5-32      2-28  (150)
224 COG0125 Tmk Thymidylate kinase  91.7    0.99 2.5E-05   24.0   9.0   52    2-54      3-55  (208)
225 PRK08082 consensus              91.6       1 2.6E-05   23.9   9.9   24    4-27    204-227 (453)
226 PRK08760 replicative DNA helic  91.6       1 2.6E-05   23.9   8.9   32    4-35    230-261 (476)
227 PRK07952 DNA replication prote  91.5       1 2.7E-05   23.8   8.8  110    4-141    98-210 (242)
228 COG2074 2-phosphoglycerate kin  91.5    0.85 2.2E-05   24.4   6.5   25    4-28     90-114 (299)
229 KOG0781 consensus               91.5     1.1 2.7E-05   23.8  10.3  168    5-182   381-564 (587)
230 COG0504 PyrG CTP synthase (UTP  91.4     1.1 2.7E-05   23.8  13.6  179    3-185     2-237 (533)
231 cd04166 CysN_ATPS CysN_ATPS su  91.4     1.1 2.7E-05   23.8  11.2  136    4-161     1-139 (208)
232 cd02027 APSK Adenosine 5'-phos  91.3    0.29 7.4E-06   27.3   3.9   30    5-35      2-31  (149)
233 COG1066 Sms Predicted ATP-depe  91.2     1.1 2.8E-05   23.7  11.2  117    4-137    95-225 (456)
234 cd00544 CobU Adenosylcobinamid  91.1    0.82 2.1E-05   24.5   6.1  128    5-151     2-145 (169)
235 PRK00726 murG N-acetylglucosam  91.1     1.1 2.9E-05   23.6   8.1   32    1-34      1-32  (359)
236 smart00382 AAA ATPases associa  91.1    0.78   2E-05   24.7   5.9   29    2-31      2-30  (148)
237 PRK08181 transposase; Validate  91.0    0.31 7.8E-06   27.2   3.8  140    4-174   108-253 (269)
238 PRK08770 DNA polymerase III su  90.8    0.25 6.4E-06   27.7   3.2   26    3-29     39-64  (663)
239 KOG3347 consensus               90.8    0.21 5.3E-06   28.2   2.8   28    3-31      8-35  (176)
240 KOG3354 consensus               90.7    0.53 1.4E-05   25.7   4.8   57    4-65     14-70  (191)
241 PRK06872 DNA polymerase III su  90.7    0.26 6.6E-06   27.7   3.2   26    3-29     39-64  (696)
242 cd03113 CTGs CTP synthetase (C  90.7     1.3 3.2E-05   23.4  14.1  176    3-185     1-237 (255)
243 TIGR02533 type_II_gspE general  90.6     0.2 5.1E-06   28.4   2.5   21    4-28    247-267 (495)
244 PRK06482 short chain dehydroge  90.6     0.1 2.6E-06   30.1   1.0   29    1-29      1-29  (276)
245 PRK09302 circadian clock prote  90.5     1.3 3.3E-05   23.3   7.0   20    4-24     26-45  (501)
246 PRK05648 DNA polymerase III su  90.5    0.27 6.9E-06   27.5   3.1   26    3-29     39-64  (705)
247 PTZ00141 elongation factor 1 a  90.4     1.2 3.1E-05   23.5   6.4  136    4-161     9-154 (443)
248 PRK05124 cysN sulfate adenylyl  90.3     1.4 3.4E-05   23.1   7.2  138    4-161    29-169 (475)
249 PRK06645 DNA polymerase III su  90.2    0.36 9.2E-06   26.7   3.5   27    2-29     43-69  (507)
250 PRK09111 DNA polymerase III su  90.2    0.35 8.9E-06   26.8   3.5   28    2-30     45-72  (600)
251 PRK12323 DNA polymerase III su  90.1    0.32 8.1E-06   27.1   3.2   26    3-29     39-64  (721)
252 COG1484 DnaC DNA replication p  90.1    0.46 1.2E-05   26.1   4.0   29    3-32    106-134 (254)
253 PRK08017 short chain dehydroge  90.0    0.82 2.1E-05   24.5   5.3   33    1-38      1-33  (256)
254 cd04170 EF-G_bact Elongation f  90.0     1.4 3.6E-05   23.0  12.4   80   92-179    62-148 (268)
255 PRK08939 primosomal protein Dn  90.0    0.46 1.2E-05   26.1   4.0   28    3-31    158-185 (306)
256 PRK05537 bifunctional sulfate   90.0    0.39 9.9E-06   26.5   3.6   11   13-23    402-412 (568)
257 PRK07667 uridine kinase; Provi  90.0    0.32 8.2E-06   27.1   3.1   27    5-32     17-43  (190)
258 PRK07994 DNA polymerase III su  89.9    0.36 9.2E-06   26.8   3.3   26    3-29     39-64  (643)
259 PRK08691 DNA polymerase III su  89.8    0.37 9.5E-06   26.6   3.4   27    2-29     38-64  (704)
260 PRK00131 aroK shikimate kinase  89.8    0.44 1.1E-05   26.2   3.7   29    3-32      5-33  (175)
261 KOG2825 consensus               89.8    0.29 7.3E-06   27.4   2.8   25    3-28     20-44  (323)
262 PRK07004 replicative DNA helic  89.6     1.5 3.9E-05   22.8  10.1   24    4-27    214-237 (460)
263 TIGR00483 EF-1_alpha translati  89.4    0.85 2.2E-05   24.4   5.0  126   11-161    15-154 (445)
264 PRK10078 ribose 1,5-bisphospho  89.4    0.43 1.1E-05   26.3   3.4   25    1-26      1-25  (184)
265 PRK00023 cmk cytidylate kinase  89.4    0.36 9.2E-06   26.7   3.0   30    1-31      1-32  (225)
266 cd00009 AAA The AAA+ (ATPases   89.3    0.43 1.1E-05   26.3   3.3   27    3-30     20-46  (151)
267 PRK05636 replicative DNA helic  89.3     1.6 4.1E-05   22.6   9.5   24    4-27    268-291 (507)
268 cd04168 TetM_like Tet(M)-like   89.3     1.6 4.2E-05   22.6  12.1   61   92-161    62-125 (237)
269 PRK07524 hypothetical protein;  89.1     1.6 4.1E-05   22.7   6.2   60  123-185   425-484 (534)
270 PRK07003 DNA polymerase III su  89.1    0.46 1.2E-05   26.1   3.4   26    3-29     39-64  (816)
271 TIGR02782 TrbB_P P-type conjug  89.0    0.39 9.9E-06   26.6   3.0   23    5-28    142-164 (315)
272 PRK06762 hypothetical protein;  89.0    0.54 1.4E-05   25.7   3.7   27    1-28      1-27  (166)
273 cd02024 NRK1 Nicotinamide ribo  88.9    0.47 1.2E-05   26.0   3.3   31    5-36      2-39  (187)
274 TIGR02525 plasmid_TraJ plasmid  88.8    0.36 9.2E-06   26.7   2.7   23    6-29    153-175 (374)
275 PRK13900 type IV secretion sys  88.8    0.37 9.5E-06   26.7   2.8   19    5-24    163-181 (332)
276 TIGR02788 VirB11 P-type DNA tr  88.8    0.44 1.1E-05   26.2   3.1   25    2-27    158-182 (328)
277 PRK05993 short chain dehydroge  88.7    0.82 2.1E-05   24.5   4.5   33    1-38      3-35  (277)
278 COG0703 AroK Shikimate kinase   88.7    0.52 1.3E-05   25.7   3.5   42    1-52      1-42  (172)
279 PRK12735 elongation factor Tu;  88.6     1.8 4.6E-05   22.4   7.9  121    6-161    15-137 (396)
280 PRK03815 murD UDP-N-acetylmura  88.5     0.6 1.5E-05   25.4   3.6   27    2-31     89-115 (401)
281 COG0305 DnaB Replicative DNA h  88.4     1.9 4.8E-05   22.3   8.4   50    4-53    197-246 (435)
282 PRK08853 DNA polymerase III su  88.3    0.51 1.3E-05   25.8   3.2   26    3-29     39-64  (717)
283 cd01130 VirB11-like_ATPase Typ  88.2    0.51 1.3E-05   25.8   3.2   26    2-28     25-50  (186)
284 PRK07414 cob(I)yrinic acid a,c  88.2     1.9 4.9E-05   22.2   6.7  126    3-133    21-158 (178)
285 pfam00437 GSPII_E Type II/IV s  88.2    0.59 1.5E-05   25.4   3.5   22    5-27    142-163 (283)
286 PRK06921 hypothetical protein;  88.1    0.67 1.7E-05   25.0   3.7   28    4-32    118-146 (265)
287 PRK13949 shikimate kinase; Pro  88.1    0.59 1.5E-05   25.4   3.4   30    1-32      1-30  (169)
288 PRK13947 shikimate kinase; Pro  88.1    0.59 1.5E-05   25.4   3.4   30    1-32      1-30  (171)
289 COG2109 BtuR ATP:corrinoid ade  88.0     1.8 4.5E-05   22.4   5.8  129    2-137    27-169 (198)
290 PRK05506 bifunctional sulfate   88.0       2 5.1E-05   22.1   7.0  161    4-185     9-184 (613)
291 KOG0635 consensus               88.0    0.55 1.4E-05   25.6   3.2   27    4-31     33-59  (207)
292 PRK05057 aroK shikimate kinase  87.9    0.65 1.7E-05   25.1   3.5   42    2-54      4-45  (172)
293 PRK00741 prfC peptide chain re  87.9       2 5.1E-05   22.1  10.3   20    5-25     13-32  (526)
294 TIGR02237 recomb_radB DNA repa  87.9     1.6 4.1E-05   22.7   5.5  132    7-161    17-157 (223)
295 cd01886 EF-G Elongation factor  87.8       2 5.2E-05   22.0  11.5   20    7-27      4-23  (270)
296 pfam07724 AAA_2 AAA domain (Cd  87.8     1.9 4.9E-05   22.2   5.9   50    4-54      5-54  (168)
297 pfam02492 cobW CobW/HypB/UreG,  87.7     2.1 5.3E-05   22.0  10.2  110    5-132     3-119 (174)
298 pfam02572 CobA_CobO_BtuR ATP:c  87.7     2.1 5.3E-05   22.0   7.9  130    2-135     2-141 (172)
299 pfam01745 IPT Isopentenyl tran  87.7     1.1 2.9E-05   23.6   4.6   41    4-45      3-51  (232)
300 TIGR03453 partition_RepA plasm  87.6    0.81 2.1E-05   24.6   3.9   32    3-34    105-136 (387)
301 PRK06321 replicative DNA helic  87.6     2.1 5.4E-05   21.9   9.8   33    4-36    227-259 (472)
302 TIGR02068 cya_phycin_syn cyano  87.5    0.47 1.2E-05   26.0   2.6   26    5-33    491-516 (876)
303 pfam01935 DUF87 Domain of unkn  87.5     0.6 1.5E-05   25.4   3.1   25    2-27     23-47  (218)
304 TIGR02982 heterocyst_DevA ABC   87.4    0.53 1.3E-05   25.7   2.8   22    5-28     34-55  (220)
305 PRK12736 elongation factor Tu;  87.3     2.2 5.5E-05   21.9   7.3  119    7-161    16-137 (394)
306 PRK05858 hypothetical protein;  87.1     2.2 5.7E-05   21.8   6.7   55  123-179   426-480 (543)
307 cd01131 PilT Pilus retraction   87.1    0.88 2.2E-05   24.3   3.8   27    4-31      3-29  (198)
308 PRK11929 putative bifunctional  87.1     2.2 5.7E-05   21.8   7.6   27    4-33    113-139 (953)
309 cd01127 TrwB Bacterial conjuga  87.0    0.94 2.4E-05   24.1   3.9   26    2-28     42-67  (410)
310 PRK13833 conjugal transfer pro  87.0    0.72 1.8E-05   24.9   3.3   24    3-27    145-168 (323)
311 TIGR00041 DTMP_kinase thymidyl  86.9     1.3 3.4E-05   23.2   4.7   47    4-51      4-52  (211)
312 cd00561 CobA_CobO_BtuR ATP:cor  86.6     2.4   6E-05   21.6   6.3  126    4-133     3-138 (159)
313 PRK12317 elongation factor 1-a  86.6     2.4 6.1E-05   21.6   7.4  136    4-161     9-149 (426)
314 PRK02496 adk adenylate kinase;  86.6    0.92 2.3E-05   24.2   3.7   33    1-38      1-33  (185)
315 cd01890 LepA LepA subfamily.    86.4     2.5 6.2E-05   21.5  11.3   96   94-198    67-169 (179)
316 cd01428 ADK Adenylate kinase (  86.2    0.87 2.2E-05   24.4   3.4   31    4-38      1-31  (194)
317 PRK06483 short chain dehydroge  86.1     2.5 6.3E-05   21.5   5.7   33    1-38      1-33  (236)
318 PRK07133 DNA polymerase III su  86.0    0.93 2.4E-05   24.2   3.5   27    2-29     40-66  (718)
319 pfam00009 GTP_EFTU Elongation   85.9     2.6 6.6E-05   21.4  12.7   63   92-162    65-129 (185)
320 PRK13894 conjugal transfer ATP  85.8    0.86 2.2E-05   24.4   3.2   24    3-27    150-173 (320)
321 PRK05201 hslU ATP-dependent pr  85.8    0.91 2.3E-05   24.2   3.3   36    1-37     49-84  (442)
322 PRK09291 short chain dehydroge  85.7    0.38 9.6E-06   26.6   1.3   33    1-38      1-33  (257)
323 PRK05563 DNA polymerase III su  85.7    0.91 2.3E-05   24.2   3.3   27    2-29     38-64  (541)
324 COG0563 Adk Adenylate kinase a  85.6    0.92 2.4E-05   24.2   3.3   24    3-27      1-24  (178)
325 KOG3308 consensus               85.6     1.7 4.3E-05   22.5   4.6   35    1-36      1-44  (225)
326 PRK13973 thymidylate kinase; P  85.5     2.7 6.9E-05   21.3   6.0   51    1-52      1-53  (216)
327 COG1160 Predicted GTPases [Gen  85.5     2.7 6.9E-05   21.2   7.0   69   93-162   225-299 (444)
328 cd01883 EF1_alpha Eukaryotic e  85.3     2.8   7E-05   21.2   6.3  134    6-161     3-146 (219)
329 PRK10787 DNA-binding ATP-depen  85.3     1.3 3.3E-05   23.3   3.9   29    4-33    351-379 (784)
330 COG4963 CpaE Flp pilus assembl  85.1     2.8 7.2E-05   21.2   9.7  178    4-189   106-310 (366)
331 PHA02519 plasmid partition pro  85.0     1.4 3.5E-05   23.1   3.9   30    4-33    108-137 (387)
332 PRK04195 replication factor C   84.9     1.1 2.9E-05   23.6   3.5   25    3-28     41-65  (403)
333 PRK13705 plasmid-partitioning   84.6     1.5 3.8E-05   22.9   4.0   30    4-33    108-137 (388)
334 PRK11160 cysteine/glutathione   84.5       3 7.7E-05   21.0   6.0   25    3-28    368-392 (575)
335 TIGR01081 mpl UDP-N-acetylmura  84.4       1 2.7E-05   23.8   3.1   27    5-34    106-132 (459)
336 PRK13506 formate--tetrahydrofo  84.3     0.6 1.5E-05   25.3   1.8   33    3-35     55-90  (577)
337 PTZ00336 elongation factor 1-a  84.1     3.1   8E-05   20.9   8.5  137    4-161     9-154 (449)
338 PRK12337 2-phosphoglycerate ki  84.1     1.1 2.7E-05   23.8   3.1   24    4-28    264-287 (492)
339 PRK06696 uridine kinase; Valid  84.0     1.5 3.9E-05   22.8   3.8   28    4-32     28-55  (227)
340 CHL00071 tufA elongation facto  83.9     3.2 8.1E-05   20.8   6.4  119    7-161    16-137 (409)
341 pfam03796 DnaB_C DnaB-like hel  83.9     3.2 8.1E-05   20.8   9.9   24    4-27     20-43  (186)
342 TIGR00618 sbcc exonuclease Sbc  83.8     1.2 3.1E-05   23.4   3.3   29    4-36     32-60  (1063)
343 cd00477 FTHFS Formyltetrahydro  83.7    0.62 1.6E-05   25.2   1.7   33    3-35     39-74  (524)
344 PRK06647 DNA polymerase III su  83.6     1.4 3.6E-05   23.0   3.5   27    2-29     38-64  (560)
345 pfam02702 KdpD Osmosensitive K  83.6     3.3 8.4E-05   20.7  12.2   34    4-39      7-40  (211)
346 PRK11448 hsdR type I restricti  83.5     1.6 4.1E-05   22.7   3.7   30    3-34    438-468 (1126)
347 PRK13826 Dtr system oriT relax  83.4     3.3 8.5E-05   20.7   7.6  113    7-141   402-515 (1102)
348 COG3944 Capsular polysaccharid  83.4    0.91 2.3E-05   24.2   2.5   24  166-189   202-225 (226)
349 KOG1384 consensus               83.4     1.3 3.4E-05   23.2   3.3   25    3-28      8-32  (348)
350 PRK13505 formate--tetrahydrofo  83.4    0.67 1.7E-05   25.1   1.8   33    3-35     55-90  (556)
351 PRK13946 shikimate kinase; Pro  83.3     1.4 3.5E-05   23.1   3.3   31    1-32     18-49  (195)
352 PRK10246 exonuclease subunit S  83.3     1.4 3.5E-05   23.1   3.4   23    4-27     32-54  (1047)
353 PRK05595 replicative DNA helic  83.3     3.4 8.6E-05   20.7  10.8   22    4-25    202-223 (444)
354 PRK00440 rfc replication facto  83.2     1.4 3.6E-05   23.0   3.4   25    4-29     39-63  (318)
355 PRK06305 DNA polymerase III su  83.2     1.4 3.6E-05   23.0   3.4   27    3-30     40-66  (462)
356 TIGR02673 FtsE cell division A  83.2       1 2.6E-05   23.9   2.7   23    5-28     31-53  (215)
357 PRK11174 cysteine/glutathione   83.1     3.4 8.8E-05   20.6   9.1  117    3-135   377-515 (588)
358 cd01672 TMPK Thymidine monopho  83.0     3.5 8.9E-05   20.6   8.6   47    5-52      3-50  (200)
359 PRK07024 short chain dehydroge  82.9    0.49 1.2E-05   25.9   0.9   33    1-38      1-33  (256)
360 TIGR01967 DEAH_box_HrpA ATP-de  82.9    0.47 1.2E-05   26.0   0.8   23    4-27     86-112 (1320)
361 pfam01268 FTHFS Formate--tetra  82.8     0.6 1.5E-05   25.3   1.4   33    3-35     55-90  (555)
362 pfam06068 TIP49 TIP49 C-termin  82.7     1.7 4.3E-05   22.5   3.6   35    1-36     48-84  (395)
363 PRK08533 flagellar accessory p  82.5     3.6 9.2E-05   20.5   6.5  105    4-111    26-135 (230)
364 COG3265 GntK Gluconate kinase   82.5     1.9   5E-05   22.2   3.8   50   12-65      4-53  (161)
365 PRK12377 putative replication   82.4     3.6 9.3E-05   20.4   8.9  103   11-141   109-214 (248)
366 COG1220 HslU ATP-dependent pro  82.4     1.6 4.2E-05   22.6   3.4   36    1-37     49-84  (444)
367 PRK13975 thymidylate kinase; P  82.3     1.6 4.2E-05   22.6   3.4   30    1-31      1-30  (198)
368 TIGR01069 mutS2 MutS2 family p  82.3     1.9 4.8E-05   22.3   3.7   29    3-32    342-372 (834)
369 PRK13507 formate--tetrahydrofo  82.3    0.73 1.9E-05   24.8   1.6   33    3-35     64-99  (587)
370 COG0466 Lon ATP-dependent Lon   82.2     1.9 4.8E-05   22.3   3.7   36    4-41    352-387 (782)
371 TIGR02868 CydC ABC transporter  81.9     1.4 3.6E-05   23.0   3.0   26    2-28    387-412 (566)
372 pfam04227 Indigoidine_A Indigo  81.8     3.8 9.7E-05   20.3   6.9  110   95-205   112-245 (293)
373 PRK13889 conjugal transfer rel  81.8     3.8 9.8E-05   20.3   8.8  113    7-141   367-480 (992)
374 PRK06749 replicative DNA helic  81.6     3.9 9.9E-05   20.3  10.3   28    4-31    187-214 (428)
375 pfam04851 ResIII Type III rest  81.6     2.3   6E-05   21.7   4.0   28    4-33     21-48  (103)
376 TIGR02538 type_IV_pilB type IV  81.4    0.81 2.1E-05   24.5   1.6   14    5-19    329-342 (577)
377 PRK13764 ATPase; Provisional    81.3     2.4 6.2E-05   21.5   4.0   28    3-31    260-287 (605)
378 TIGR02528 EutP ethanolamine ut  81.2    0.96 2.5E-05   24.1   1.9  117    3-152     1-121 (144)
379 TIGR03420 DnaA_homol_Hda DnaA   81.1     2.7 6.8E-05   21.3   4.2   30    3-33     39-68  (226)
380 PRK08451 DNA polymerase III su  80.8     2.2 5.6E-05   21.8   3.6   27    2-29     36-62  (523)
381 PRK08506 replicative DNA helic  80.7     4.2 0.00011   20.1   9.8   24    4-27    194-217 (473)
382 cd01129 PulE-GspE PulE/GspE Th  80.6     2.2 5.5E-05   21.9   3.6   29    4-33     82-110 (264)
383 PRK05896 DNA polymerase III su  80.4     2.3 5.8E-05   21.7   3.6   27    2-29     38-64  (613)
384 TIGR03346 chaperone_ClpB ATP-d  80.4     4.3 0.00011   20.0   5.2   21    5-27    198-218 (852)
385 PRK00081 coaE dephospho-CoA ki  80.0     1.9 4.8E-05   22.2   3.1   23    1-24      1-23  (199)
386 COG1435 Tdk Thymidine kinase [  80.0     2.3 5.8E-05   21.7   3.5  110    1-130     3-117 (201)
387 PRK00411 cdc6 cell division co  79.7     2.6 6.6E-05   21.4   3.7   27    3-30     56-82  (394)
388 PRK12402 replication factor C   79.7     2.2 5.6E-05   21.9   3.3   26    4-30     38-63  (337)
389 COG1855 ATPase (PilT family) [  79.5     2.5 6.3E-05   21.5   3.5   28    3-31    264-291 (604)
390 TIGR00390 hslU heat shock prot  79.4     2.2 5.5E-05   21.9   3.2   32    1-33     46-77  (463)
391 COG1125 OpuBA ABC-type proline  79.4     4.6 0.00012   19.8   6.0   45   88-132   148-195 (309)
392 pfam03215 Rad17 Rad17 cell cyc  79.3     4.6 0.00012   19.8  10.6   33    4-37     47-82  (490)
393 TIGR00150 TIGR00150 conserved   79.2     1.9 4.9E-05   22.2   2.9   28    3-30     28-55  (147)
394 PRK13721 conjugal transfer ATP  79.1     2.8 7.2E-05   21.1   3.7   23    5-28    477-499 (864)
395 cd01891 TypA_BipA TypA (tyrosi  78.9     4.8 0.00012   19.7   8.1   64   93-162    64-127 (194)
396 TIGR01271 CFTR_protein cystic   78.9     3.2 8.3E-05   20.8   4.0  121    3-131  1287-1420(1534)
397 PRK10263 DNA translocase FtsK;  78.8     1.9 4.8E-05   22.2   2.8   22    4-26   1012-1033(1355)
398 cd03247 ABCC_cytochrome_bd The  78.7     4.8 0.00012   19.7   6.0   25    3-28     29-53  (178)
399 TIGR00631 uvrb excinuclease AB  78.7     1.3 3.3E-05   23.3   1.9  134    9-159    36-197 (667)
400 TIGR02639 ClpA ATP-dependent C  78.7     2.3 5.7E-05   21.8   3.1   20    4-25    232-251 (774)
401 CHL00099 ilvB acetohydroxyacid  78.6     4.9 0.00012   19.7   5.5   22    6-27     77-98  (588)
402 COG2804 PulE Type II secretory  78.6     2.8 7.3E-05   21.1   3.6   29    4-33    260-288 (500)
403 TIGR03345 VI_ClpV1 type VI sec  78.6     2.7 6.9E-05   21.2   3.5   15   12-26    217-231 (852)
404 PRK00698 tmk thymidylate kinas  78.5     4.9 0.00012   19.6   8.3   51    1-52      1-53  (204)
405 PRK08263 short chain dehydroge  78.4    0.89 2.3E-05   24.3   1.0   33    1-38      2-34  (275)
406 pfam01580 FtsK_SpoIIIE FtsK/Sp  78.3     2.2 5.6E-05   21.8   3.0   24    4-28     40-63  (202)
407 cd00881 GTP_translation_factor  78.3       5 0.00013   19.6   9.7   62   93-162    61-124 (189)
408 PRK00049 elongation factor Tu;  78.3       5 0.00013   19.6   8.4  120    7-161    16-138 (397)
409 PRK10436 hypothetical protein;  78.1     3.5 8.9E-05   20.6   4.0   29    4-33    217-245 (461)
410 TIGR01421 gluta_reduc_1 glutat  78.1     1.7 4.3E-05   22.5   2.4   40   87-132   174-213 (475)
411 PRK08266 hypothetical protein;  78.1     5.1 0.00013   19.6   6.3   42  123-166   417-458 (531)
412 PRK08903 hypothetical protein;  78.1     3.5   9E-05   20.5   4.0   29    4-33     44-72  (227)
413 cd00464 SK Shikimate kinase (S  78.0     2.5 6.4E-05   21.5   3.2   27    5-32      2-28  (154)
414 PRK13948 shikimate kinase; Pro  78.0     2.7 6.9E-05   21.3   3.4   28    4-32     12-39  (182)
415 PRK12824 acetoacetyl-CoA reduc  77.9     5.1 0.00013   19.5   7.0   33    1-38      1-33  (245)
416 cd03228 ABCC_MRP_Like The MRP   77.6     5.2 0.00013   19.5   6.5   25    3-28     29-53  (171)
417 cd01393 recA_like RecA is a  b  77.2     5.3 0.00014   19.4   7.8   24    5-29     22-45  (226)
418 PRK06067 flagellar accessory p  77.2       4  0.0001   20.2   4.0   30    3-33     33-62  (241)
419 TIGR01826 CofD_related conserv  77.1     2.6 6.7E-05   21.3   3.1   70   90-160   187-265 (331)
420 pfam00006 ATP-synt_ab ATP synt  77.1     5.4 0.00014   19.4   8.6  113    2-130    15-130 (213)
421 cd03785 GT1_MurG MurG is an N-  77.1     5.4 0.00014   19.4   7.1   29    4-33      1-29  (350)
422 PRK00625 shikimate kinase; Pro  76.9     3.1 7.9E-05   20.9   3.4   40    3-52      1-40  (173)
423 pfam00004 AAA ATPase family as  76.8     2.6 6.6E-05   21.4   3.0   26    6-32      2-27  (131)
424 KOG0460 consensus               76.5     3.9  0.0001   20.2   3.9   21   11-31     62-82  (449)
425 PRK08099 nicotinamide-nucleoti  76.4     3.7 9.5E-05   20.4   3.7   29    2-31    231-259 (411)
426 PRK10865 protein disaggregatio  76.4     3.4 8.7E-05   20.6   3.5   20    7-27    204-223 (857)
427 TIGR00382 clpX ATP-dependent C  76.3     1.7 4.3E-05   22.6   1.9  182    5-199   155-367 (452)
428 PRK05986 cob(I)yrinic acid a,c  76.3     5.7 0.00014   19.2   5.5  123    4-135    23-159 (190)
429 PRK04132 replication factor C   76.2     2.3 5.8E-05   21.7   2.6   23    4-27     48-70  (863)
430 COG3911 Predicted ATPase [Gene  76.2     2.8 7.2E-05   21.1   3.1   26    4-33     10-35  (183)
431 PRK07471 DNA polymerase III su  76.1     3.7 9.5E-05   20.4   3.6   28    1-29     38-65  (363)
432 PRK11034 clpA ATP-dependent Cl  76.1     3.6 9.1E-05   20.5   3.5   14   12-25    216-229 (758)
433 PRK06674 DNA polymerase III su  76.1     3.2 8.3E-05   20.8   3.3   27    2-29     38-64  (563)
434 cd01885 EF2 EF2 (for archaea a  76.0     5.3 0.00014   19.4   4.4   61   94-162    73-135 (222)
435 TIGR01193 bacteriocin_ABC ABC-  75.9     5.8 0.00015   19.2   8.3  144    2-160   500-667 (710)
436 COG1474 CDC6 Cdc6-related prot  75.9     3.7 9.5E-05   20.4   3.6   27    4-31     44-70  (366)
437 pfam05729 NACHT NACHT domain.   75.8     4.1  0.0001   20.1   3.8   27    3-30      1-27  (165)
438 pfam06745 KaiC KaiC. This fami  75.7     5.9 0.00015   19.2   8.8  129    3-133    20-165 (231)
439 TIGR01935 NOT-MenG RraA family  75.7     3.5 8.8E-05   20.6   3.4   69  114-186    48-119 (155)
440 CHL00095 clpC Clp protease ATP  75.6     3.7 9.4E-05   20.4   3.5   15   12-26    209-223 (823)
441 cd02020 CMPK Cytidine monophos  75.6       3 7.5E-05   21.0   3.0   36    5-44      2-37  (147)
442 pfam00308 Bac_DnaA Bacterial d  75.6     3.8 9.8E-05   20.3   3.6   26    4-30     36-61  (219)
443 smart00072 GuKc Guanylate kina  75.4     3.5 8.9E-05   20.6   3.4   32    3-35      3-34  (184)
444 PRK10522 multidrug transporter  75.3     2.7 6.9E-05   21.2   2.8   25    3-28    350-374 (547)
445 COG1428 Deoxynucleoside kinase  75.3     3.4 8.8E-05   20.6   3.3   27    3-30      5-31  (216)
446 pfam02223 Thymidylate_kin Thym  75.2     3.5 8.8E-05   20.6   3.3   43    9-52      3-46  (186)
447 PRK07764 DNA polymerase III su  75.1     3.4 8.7E-05   20.6   3.2   26    3-29     38-63  (775)
448 pfam07726 AAA_3 ATPase family   75.0     3.5 8.8E-05   20.6   3.2   28    5-33      2-29  (131)
449 COG0542 clpA ATP-binding subun  74.9     3.7 9.5E-05   20.4   3.4   21    6-27    525-545 (786)
450 cd01918 HprK_C HprK/P, the bif  74.8     3.8 9.6E-05   20.4   3.4   24    2-26     14-37  (149)
451 TIGR02524 dot_icm_DotB Dot/Icm  74.4     3.6 9.2E-05   20.5   3.2   24    4-28    136-159 (358)
452 PRK05642 DNA replication initi  74.3     5.5 0.00014   19.3   4.1   28    3-31     46-73  (234)
453 TIGR03263 guanyl_kin guanylate  74.2     3.9  0.0001   20.2   3.4   24    3-27      2-25  (180)
454 KOG1610 consensus               74.0     6.5 0.00017   18.9   7.9  127    2-150    29-156 (322)
455 COG4088 Predicted nucleotide k  74.0     4.1  0.0001   20.1   3.4   29    4-33      3-31  (261)
456 cd00227 CPT Chloramphenicol (C  73.9     3.5   9E-05   20.5   3.1   30    2-32      2-31  (175)
457 pfam00625 Guanylate_kin Guanyl  73.8       4  0.0001   20.2   3.3   28    3-31      2-29  (182)
458 pfam06431 Polyoma_lg_T_C Polyo  73.8     3.7 9.3E-05   20.4   3.1   26    2-27    154-179 (417)
459 PRK06893 DNA replication initi  73.6     5.2 0.00013   19.5   3.9   27    4-31     41-67  (229)
460 PRK08727 hypothetical protein;  73.6     5.5 0.00014   19.3   4.0   28    4-32     43-70  (233)
461 PRK05342 clpX ATP-dependent pr  73.5     4.1  0.0001   20.1   3.3   30    4-34    111-140 (411)
462 COG0237 CoaE Dephospho-CoA kin  73.5     4.2 0.00011   20.0   3.4   24    1-25      1-24  (201)
463 COG5256 TEF1 Translation elong  73.4     6.7 0.00017   18.8   6.2  135    5-161    10-154 (428)
464 PRK09354 recA recombinase A; P  73.2     6.7 0.00017   18.8   4.4   90    4-106    62-151 (350)
465 TIGR00888 guaA_Nterm GMP synth  73.2     5.2 0.00013   19.5   3.8   37  143-182    33-76  (195)
466 pfam07931 CPT Chloramphenicol   73.2     3.8 9.7E-05   20.3   3.1   29    3-32      2-30  (174)
467 cd03246 ABCC_Protease_Secretio  73.2     6.8 0.00017   18.8   6.0   25    3-28     29-53  (173)
468 PRK00139 murE UDP-N-acetylmura  73.1     6.8 0.00017   18.7   6.6   28    4-34    102-129 (481)
469 cd01385 MYSc_type_IX Myosin mo  73.1     4.7 0.00012   19.8   3.5   24    3-27     95-118 (692)
470 cd01120 RecA-like_NTPases RecA  73.1     6.8 0.00017   18.7   8.1   28    5-33      2-29  (165)
471 PRK07940 DNA polymerase III su  73.0     4.7 0.00012   19.7   3.6   28    1-29     38-65  (395)
472 PRK06882 acetolactate synthase  73.0     6.8 0.00017   18.7   4.7   39  124-164   440-478 (574)
473 pfam07728 AAA_5 AAA domain (dy  72.9     3.8 9.7E-05   20.3   3.1   23    5-28      2-24  (139)
474 COG3421 Uncharacterized protei  72.8     2.6 6.6E-05   21.4   2.2   23   11-33      5-28  (812)
475 pfam10662 PduV-EutP Ethanolami  72.8     3.7 9.3E-05   20.4   2.9   22    1-24      1-22  (143)
476 COG1100 GTPase SAR1 and relate  72.7     3.3 8.5E-05   20.7   2.7   29    3-32      6-34  (219)
477 TIGR02640 gas_vesic_GvpN gas v  72.6     2.2 5.7E-05   21.8   1.8   22    6-28     25-46  (265)
478 pfam09848 DUF2075 Uncharacteri  72.6       7 0.00018   18.7  14.8  167    3-185     2-184 (348)
479 pfam02562 PhoH PhoH-like prote  72.5     5.4 0.00014   19.4   3.7   25    4-29     21-46  (205)
480 pfam08303 tRNA_lig_kinase tRNA  72.3     2.7 6.9E-05   21.3   2.2   18   11-28      7-24  (169)
481 COG1224 TIP49 DNA helicase TIP  72.3     5.2 0.00013   19.5   3.6   33    3-36     66-99  (450)
482 pfam06309 Torsin Torsin. This   72.2     3.3 8.5E-05   20.7   2.6   23   11-33     61-83  (127)
483 pfam05707 Zot Zonular occluden  72.1     5.8 0.00015   19.2   3.8  107    3-132     1-115 (183)
484 COG0630 VirB11 Type IV secreto  72.1     4.2 0.00011   20.1   3.1   14   90-103   140-153 (312)
485 cd03249 ABC_MTABC3_MDL1_MDL2 M  72.1     3.5 8.9E-05   20.6   2.7   25    3-28     30-54  (238)
486 cd03251 ABCC_MsbA MsbA is an e  72.0     3.1 7.9E-05   20.9   2.4   25    3-28     29-53  (234)
487 PRK00300 gmk guanylate kinase;  71.8     4.1  0.0001   20.1   3.0   27    4-31      9-35  (208)
488 cd01377 MYSc_type_II Myosin mo  71.7     5.4 0.00014   19.4   3.6   24    3-27     92-115 (693)
489 PRK06456 acetolactate synthase  71.5     7.2 0.00018   18.6   4.2   18   10-27     74-91  (572)
490 PRK13342 recombination factor   71.5     4.8 0.00012   19.7   3.3   29    4-33     39-67  (417)
491 PRK08084 DNA replication initi  71.4     6.6 0.00017   18.8   4.0   27    4-31     47-73  (235)
492 TIGR01074 rep ATP-dependent DN  71.4     3.6 9.2E-05   20.5   2.6   28    5-34     20-48  (677)
493 TIGR02770 nickel_nikD nickel i  71.4     2.6 6.5E-05   21.4   1.9   23    5-28     15-37  (239)
494 PRK13951 bifunctional shikimat  71.3     5.1 0.00013   19.5   3.4   26    3-29      1-26  (488)
495 PRK07270 DNA polymerase III su  71.3     4.9 0.00012   19.7   3.3   27    2-29     37-63  (557)
496 pfam00931 NB-ARC NB-ARC domain  71.2     4.1  0.0001   20.1   2.9   25    3-28     20-44  (285)
497 PRK06179 short chain dehydroge  71.2     7.5 0.00019   18.5   5.6   33    1-38      1-35  (270)
498 cd03277 ABC_SMC5_euk Eukaryoti  71.2     4.4 0.00011   19.9   3.0   22    5-27     26-47  (213)
499 PRK00652 lpxK tetraacyldisacch  71.1     3.7 9.3E-05   20.4   2.6   25   11-35     59-83  (334)
500 cd01123 Rad51_DMC1_radA Rad51_  70.9     7.7  0.0002   18.4   7.7  122    7-129    24-166 (235)

No 1  
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=100.00  E-value=0  Score=317.60  Aligned_cols=204  Identities=35%  Similarity=0.584  Sum_probs=182.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHH-----HCCCCCCEECCCC---CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             299983589874799999999998-----4048612013887---38068999998557873114430014510347889
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHAL-----NAYYWKPIQSGMY---EETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLA   75 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l-----~~~~~KPv~~G~~---~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (217)
                      .|||+||+||||||++|++||++|     +++|||||++|+.   .++|+.+++..++...+...++|+.|..|.|||.+
T Consensus         1 ~ifI~GT~T~vGKT~vt~~L~~~l~~~G~~v~~~KPv~tG~~~~~~~~Da~~~~~~~~~~~~~~~~~p~~~~~p~sP~~a   80 (223)
T PRK00090          1 VLFVTGTDTGVGKTVVTAALAQALREQGYRVAGYKPVQSGCDGGLRNGDALALQRLSGLPLDYELVNPYRFEEPLSPHLA   80 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHH
T ss_conf             98998689997699999999999997899489975120489889972799999998089998676054025889898999


Q ss_pred             HHHHHCCCHH-----HHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             9985023507-----88642232887999227655566767530899999747944897057765045799999999847
Q gi|254780487|r   76 AEIDGVIIDP-----ATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNR  150 (217)
Q Consensus        76 ~~~~~~~i~~-----~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~  150 (217)
                      ++.++..++.     .+.++++.+|++||||+||+++|...+.+++|+|+.+++|||||++.++|++||+++++++++++
T Consensus        81 a~~~g~~i~~~~i~~~~~~l~~~~d~vlvEGaGGl~~Pl~~~~~~~Dla~~l~~pvILV~~~~lG~inhtllt~eal~~~  160 (223)
T PRK00090         81 ARLEGVTIDLEKISAALRELAQQADLVLVEGAGGLLVPLTDDLTLADLAAQLQLPVILVVGVKLGCINHTLLTLEAIRAR  160 (223)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf             99909846899999999999831898999468865567567878899999968898999769888099999989999968


Q ss_pred             CCEEEEEEECCCCCC-----CHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             990799997697780-----0599999861998999947888888879999999713399999999
Q gi|254780487|r  151 NINIIGIAFIGDSMP-----KVEETIVKIGRIPHLGRLPKIDPIDPDVLHQKFQEHFTQSLLQKYF  211 (217)
Q Consensus       151 g~~i~GiIlN~~~~~-----~~~~~le~~~~ipvLG~iP~~~~~~~~~l~~~~~~~~~~~~l~~~~  211 (217)
                      |++++|||+|+....     ++.++|++.+|+|+||+|||+++++++++    .++++.+.+.+.+
T Consensus       161 gl~v~GvI~N~~~~~~~~~~~~~~~l~~~~gvPvLG~iP~~~~~~~~~~----~~~~~~~~~~~~~  222 (223)
T PRK00090        161 GLPLAGWVANGVPPEGLRHAENLATLAELLPAPLLGRLPYLAELSPEAA----AAYLDLDKLAELL  222 (223)
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH----HHHHCHHHHHHHH
T ss_conf             9948999996858836677768999998549988997589999895899----9873999999864


No 2  
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=100.00  E-value=0  Score=309.47  Aligned_cols=205  Identities=25%  Similarity=0.360  Sum_probs=171.6

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCC-----CCCCEECCCCC------CCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             983299983589874799999999998404-----86120138873------8068999998557873114430014510
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAY-----YWKPIQSGMYE------ETDSKTIHRIGRIPKSHIIPEKWKLRTP   69 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~-----~~KPv~~G~~~------~~D~~~~~~~~~~~~~~~~~~~~~~~~~   69 (217)
                      |.|+||||||+||||||+||++|+++++..     +||||++|+..      +.|+..++.......++..++|+.+...
T Consensus         1 Mmk~~FITGTDTdVGKT~vsaaL~~~l~~~G~~v~~~KPVasG~~~~~~g~~~~Da~~l~~~~~~~~~~~~vnP~~~~~~   80 (231)
T PRK12374          1 MLKRFFITGTDTSVGKTVVSRALLQALASQGKSVAGYKPVAKGSKETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEE   80 (231)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCC
T ss_conf             99647998789995399999999999997899488885688399668998724789999987378999887197668866


Q ss_pred             HHHHHH-HHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             347889-9985023507886422328879992276555667675308999997479448970577650457999999998
Q gi|254780487|r   70 ASPHLA-AEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLR  148 (217)
Q Consensus        70 ~~~~~~-~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~  148 (217)
                      .++... ...+...+...+.++.+.+|++||||+||+++|+..+.+++|+++.+++|||||++.++||+||+++|+++++
T Consensus        81 ~aa~~~~~~id~~~i~~~~~~l~~~~d~vlVEGAGG~~vPl~~~~~~~Dl~~~l~lPVILV~~~~LG~INHtLLT~eal~  160 (231)
T PRK12374         81 ESSVAHSCPINYTLISNGLANLTDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIA  160 (231)
T ss_pred             CCCHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCEEECCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             57744548578999999999988557979997798621304765149999998399999998898684889999999999


Q ss_pred             HCCCEEEEEEECCCCC-----CCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             4799079999769778-----005999998619989999478888888799999997133999999
Q gi|254780487|r  149 NRNINIIGIAFIGDSM-----PKVEETIVKIGRIPHLGRLPKIDPIDPDVLHQKFQEHFTQSLLQK  209 (217)
Q Consensus       149 ~~g~~i~GiIlN~~~~-----~~~~~~le~~~~ipvLG~iP~~~~~~~~~l~~~~~~~~~~~~l~~  209 (217)
                      ++|++++|||+|+...     ..+.++|++.++.|+||+|||+++.++..+++    +++.+.|.+
T Consensus       161 ~~gl~l~G~I~N~~~p~~~~~~e~i~~L~~~~~~P~LG~iP~l~~~~~~~~~~----~l~~~~l~~  222 (231)
T PRK12374        161 NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQ----YIRLAMLRS  222 (231)
T ss_pred             HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH----HCCHHHHHH
T ss_conf             78995799999836797046788999999855999788689999989899997----538898887


No 3  
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=100.00  E-value=1.4e-45  Score=306.78  Aligned_cols=192  Identities=38%  Similarity=0.596  Sum_probs=172.8

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHH-----HCCCCCCEECCCCCC---CHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf             983299983589874799999999998-----404861201388738---068999998557873114430014510347
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHAL-----NAYYWKPIQSGMYEE---TDSKTIHRIGRIPKSHIIPEKWKLRTPASP   72 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l-----~~~~~KPv~~G~~~~---~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (217)
                      |.|+|||+||+||||||++|++|++++     ++.||||||||..+.   +|...+++.++...++..++||+|..|.||
T Consensus         1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~P~sP   80 (223)
T COG0132           1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETAENSDALVLQRLSGLDLSYELINPYRFKEPLSP   80 (223)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCC
T ss_conf             97369998279996499999999999996897059877522178778997459999985199866335433530788884


Q ss_pred             HHHHHHHHCCCHHHH-----HHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             889998502350788-----642232887999227655566767530899999747944897057765045799999999
Q gi|254780487|r   73 HLAAEIDGVIIDPAT-----INPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETL  147 (217)
Q Consensus        73 ~~~~~~~~~~i~~~~-----~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~  147 (217)
                      |++++.|+..++.+.     .++.+.+|++||||+||+++|+..+.+.+|+++.|++|||||++.++|||||++|+++++
T Consensus        81 hlAa~~eg~~I~~~~l~~~l~~l~~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtlLt~eal  160 (223)
T COG0132          81 HLAAELEGRTIDLEKLSQGLRQLLKKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVEAL  160 (223)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             77787648935699998788854054678999678733332578652999999809999999667757787999999999


Q ss_pred             HHCCCEEEEEEECCCCCCCH-----HHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf             84799079999769778005-----9999986199899994788888887
Q gi|254780487|r  148 RNRNINIIGIAFIGDSMPKV-----EETIVKIGRIPHLGRLPKIDPIDPD  192 (217)
Q Consensus       148 ~~~g~~i~GiIlN~~~~~~~-----~~~le~~~~ipvLG~iP~~~~~~~~  192 (217)
                      +++|++++|||+|+......     ..++++.+++|++|.+||.++...+
T Consensus       161 ~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~~~p~~g~~p~~~~~~~~  210 (223)
T COG0132         161 RARGLPLAGWVANGINPELDHYAEINATLLKRIGAPLLGIIPYLPESEEE  210 (223)
T ss_pred             HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf             97799878999726788555788889999974289743405577663201


No 4  
>TIGR00347 bioD dethiobiotin synthase; InterPro: IPR004472 The enzyme is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP and requires magnesium as a co-factor. The Thr residue at position seven of the seed alignment is necessary for the binding of ATP.; GO: 0004141 dethiobiotin synthase activity, 0005524 ATP binding, 0009102 biotin biosynthetic process.
Probab=100.00  E-value=7.9e-39  Score=262.70  Aligned_cols=155  Identities=39%  Similarity=0.638  Sum_probs=144.9

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHH-----CCCCCCEECCCC---CC---CHHHHHHHHHCCCCCCC---CCCCCCCCCCHH
Q ss_conf             99835898747999999999984-----048612013887---38---06899999855787311---443001451034
Q gi|254780487|r    6 VIVGTDTSVGKTIFASALVHALN-----AYYWKPIQSGMY---EE---TDSKTIHRIGRIPKSHI---IPEKWKLRTPAS   71 (217)
Q Consensus         6 ~I~GT~t~vGKT~vs~~L~~~l~-----~~~~KPv~~G~~---~~---~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~   71 (217)
                      ||||||||||||++|.+|++.++     ++++|||+||..   ++   +|+..++.+.....+.+   .++|+.|..|.|
T Consensus         1 FvTGtDT~VGKT~~ss~La~~lk~~G~~~g~~Kpv~tG~~~~~~dL~~~D~~~L~~~~~~~~~~~~Pi~~~P~~F~~Pls   80 (187)
T TIGR00347         1 FVTGTDTGVGKTVVSSALAKKLKKAGYSVGYYKPVQTGIEETAEDLRNEDTELLQNISGTALDLDGPIEVNPYAFALPLS   80 (187)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf             91022458617899899999999759852511200015766776310567999987654432138984426632056886


Q ss_pred             HHHHHHHHHCCCHH---------HHHHHHHHCCEEEEECCCCCCCCCC-CCCCHHHHHHHH------CCCEEEEECCCCC
Q ss_conf             78899985023507---------8864223288799922765556676-753089999974------7944897057765
Q gi|254780487|r   72 PHLAAEIDGVIIDP---------ATINPPDINDSIIIEGIGGLLVPLT-TEYLFIDLIERW------QFPIILCARTSLG  135 (217)
Q Consensus        72 ~~~~~~~~~~~i~~---------~~~~~~~~~D~viIEGagg~~~~~~-~~~~~~dla~~l------~~~vILV~~~~~g  135 (217)
                      ||.+++.|++.++.         +|.++.+++|++|||||||+++|.. .+.+.+|+++.+      ++|+|||++.++|
T Consensus        81 P~~A~~~Eg~~i~~~~~~~~~~naye~l~~~~d~~lVEGAGG~~vP~~r~~~t~~D~i~~~ietsGh~L~~ilV~r~~LG  160 (187)
T TIGR00347        81 PHIAAKQEGRPIDLEELSKHLRNAYEELEEKYDFVLVEGAGGLCVPITREEYTVADLIKLLIETSGHQLPVILVVRVKLG  160 (187)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             25888617783268889878878999999717917998336242666612457999999998505882027987468646


Q ss_pred             HHHHHHHHHHHHHHCCCE--EEEEEEC
Q ss_conf             045799999999847990--7999976
Q gi|254780487|r  136 TINHSLLSLETLRNRNIN--IIGIAFI  160 (217)
Q Consensus       136 ~i~~~~l~~~~~~~~g~~--i~GiIlN  160 (217)
                      +||||+|+++++++.|++  ++|||+|
T Consensus       161 tiNHt~Lt~~~~~~~Gl~shl~G~i~N  187 (187)
T TIGR00347       161 TINHTLLTVEAARQTGLKSHLAGVILN  187 (187)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf             067999999999977994443545619


No 5  
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=100.00  E-value=3.1e-33  Score=227.62  Aligned_cols=124  Identities=35%  Similarity=0.540  Sum_probs=113.4

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHC-----CCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9998358987479999999999840-----48612013887380689999985578731144300145103478899985
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNA-----YYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEID   79 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~-----~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (217)
                      +++.||+||||||++|++|+|+++.     .+|||+++                                          
T Consensus         1 ~~~~GTdT~VGKT~vt~~l~~~l~~~G~~v~~~KPv~t------------------------------------------   38 (134)
T cd03109           1 IMGFGTGTDIGKTVATAILARALKEKGYRVAPLKPVQT------------------------------------------   38 (134)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHC------------------------------------------
T ss_conf             95752788876899999999999977991778756672------------------------------------------


Q ss_pred             HCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             02350788642232887999227655566767530899999747944897057765045799999999847990799997
Q gi|254780487|r   80 GVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAF  159 (217)
Q Consensus        80 ~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIl  159 (217)
                                    +|+++|||+||+++|+..+.+++|+++.+++|+|||++.++|++||+++++++++++|++++|+|+
T Consensus        39 --------------~D~vlVEGaGG~~vPl~~~~~~~Dl~~~l~~pvIlV~~~~LG~INhtlLt~eal~~~gi~v~G~i~  104 (134)
T cd03109          39 --------------YDFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLG  104 (134)
T ss_pred             --------------CCEEEEECCCCEEECCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             --------------798999889774600389862999999709998999778878589999999999987992889999


Q ss_pred             CCCCC-----CCHHHHHHHHCCCCEEEEEC
Q ss_conf             69778-----00599999861998999947
Q gi|254780487|r  160 IGDSM-----PKVEETIVKIGRIPHLGRLP  184 (217)
Q Consensus       160 N~~~~-----~~~~~~le~~~~ipvLG~iP  184 (217)
                      |+...     .++.++|++++++|+||++|
T Consensus       105 N~~~~~~~~~~~N~~~I~~~t~vPvLG~vP  134 (134)
T cd03109         105 NVIVEKEGLATLNVETIERLTGIPVLGIVP  134 (134)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             467997106787599999974999778288


No 6  
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=100.00  E-value=2.3e-31  Score=215.89  Aligned_cols=196  Identities=19%  Similarity=0.233  Sum_probs=144.2

Q ss_pred             CC-CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC--CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             98-3299983589874799999999998404861--20138873806899999855787311443001451034788999
Q gi|254780487|r    1 MK-LRLVIVGTDTSVGKTIFASALVHALNAYYWK--PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAE   77 (217)
Q Consensus         1 M~-~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K--Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (217)
                      |+ ++|+|+||+||+|||++|+||||+|+++|+|  ||++| +++.|+.++....+....  ...++....         
T Consensus         1 m~~p~lmI~gt~S~~GKT~vt~gL~r~l~~rG~~VapFK~G-PDyIdp~~~~~a~g~~~~--nLD~~l~~~---------   68 (451)
T PRK01077          1 MRMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG-PDYIDPAFHAAATGRPSR--NLDSWMMGE---------   68 (451)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHHHCCCCC--CCCHHHCCH---------
T ss_conf             99887999868999978999999999999687945753578-576298999999789753--588344899---------


Q ss_pred             HHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCC---CCCHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHHCCC
Q ss_conf             8502350788642232887999227655566767---53089999974794489705776--504579999999984799
Q gi|254780487|r   78 IDGVIIDPATINPPDINDSIIIEGIGGLLVPLTT---EYLFIDLIERWQFPIILCARTSL--GTINHSLLSLETLRNRNI  152 (217)
Q Consensus        78 ~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~---~~~~~dla~~l~~~vILV~~~~~--g~i~~~~l~~~~~~~~g~  152 (217)
                         ..+...+.+.++++|++||||++|++++...   ..+.+++|+.+++|||||++++.  +++...+.+...+. ...
T Consensus        69 ---~~v~~~~~~~~~~~D~~viEG~mGlyDG~~~~~~~gS~aeiA~~l~~PViLViD~~~~~~s~aa~v~G~~~~~-~~~  144 (451)
T PRK01077         69 ---DLVRALFARAAGGADIAVIEGVMGLFDGAGGDPDKGSTADIARLLGAPVVLVVDASGMAQSAAALVLGFARFD-PDL  144 (451)
T ss_pred             ---HHHHHHHHHHCCCCCEEEEEECHHCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHC-CCC
T ss_conf             ---9999999975466888998501011345456777777899998709988999846620899999999999759-778


Q ss_pred             EEEEEEECCCCCCCHHHH----HHHHCCCCEEEEECCCCCCCHHH--------------------HHHHHHHHHHHHHHH
Q ss_conf             079999769778005999----99861998999947888888879--------------------999999713399999
Q gi|254780487|r  153 NIIGIAFIGDSMPKVEET----IVKIGRIPHLGRLPKIDPIDPDV--------------------LHQKFQEHFTQSLLQ  208 (217)
Q Consensus       153 ~i~GiIlN~~~~~~~~~~----le~~~~ipvLG~iP~~~~~~~~~--------------------l~~~~~~~~~~~~l~  208 (217)
                      +|+|+|+|+...+.+.+.    +|+ +|+||||+||+.+++..++                    +.+..+++++...+.
T Consensus       145 ~I~GvIlNk~~g~~h~~ll~~~ie~-~gvpvlG~lP~~~~l~lpeRHLGLv~~~E~~~~~~~~~~~~~~~~~~id~~~l~  223 (451)
T PRK01077        145 NIAGVILNRVGSERHYQLLREALEE-LGLPVLGALPRDAALALPERHLGLVQASEIADLEARLDALADLVEAHVDLDALL  223 (451)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             7748996247876689999999986-399579861576334564212577670456668999999999998617999999


Q ss_pred             HHHHH
Q ss_conf             99998
Q gi|254780487|r  209 KYFYE  213 (217)
Q Consensus       209 ~~~~~  213 (217)
                      +.++.
T Consensus       224 ~i~~~  228 (451)
T PRK01077        224 ALARA  228 (451)
T ss_pred             HHHHC
T ss_conf             98504


No 7  
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=100.00  E-value=5e-31  Score=213.79  Aligned_cols=196  Identities=20%  Similarity=0.235  Sum_probs=153.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCC--CCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             329998358987479999999999840486--120138873806899999855787311443001451034788999850
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYW--KPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG   80 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~--KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (217)
                      ++++|+||+|++|||+||+||+++|+.+++  +|+++| |++.|+.++..+.+.....-  .+|....            
T Consensus         1 ~~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvG-PDYIDP~~H~~atG~~srNL--D~~mm~~------------   65 (451)
T COG1797           1 PAVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVG-PDYIDPGYHTAATGRPSRNL--DSWMMGE------------   65 (451)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCC--CHHHCCH------------
T ss_conf             93599548888858999999999998668721665568-78638135667638856777--6544699------------


Q ss_pred             CCCHHHHHHHHHHCCEEEEECCCCCCCCCC---CCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEE
Q ss_conf             235078864223288799922765556676---7530899999747944897057765045799999999847-990799
Q gi|254780487|r   81 VIIDPATINPPDINDSIIIEGIGGLLVPLT---TEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNR-NINIIG  156 (217)
Q Consensus        81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~---~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~-g~~i~G  156 (217)
                      ..+...|.+..++.|+.||||++|++++..   ...|.+++|+.|++|||||.+++..+-+.+.....+...+ +++|+|
T Consensus        66 ~~v~~~f~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaG  145 (451)
T COG1797          66 EGVRALFARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAG  145 (451)
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             89999999862789879996123023688777677779999998599989999575225789999988986199882578


Q ss_pred             EEECCCCCCCHHH----HHHHHCCCCEEEEECCCCCCCHH--------------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf             9976977800599----99986199899994788888887--------------------99999997133999999999
Q gi|254780487|r  157 IAFIGDSMPKVEE----TIVKIGRIPHLGRLPKIDPIDPD--------------------VLHQKFQEHFTQSLLQKYFY  212 (217)
Q Consensus       157 iIlN~~~~~~~~~----~le~~~~ipvLG~iP~~~~~~~~--------------------~l~~~~~~~~~~~~l~~~~~  212 (217)
                      ||+|+...+++.+    .+|+.+++||||+||+.+++.-+                    .+++..++++|...+.+.++
T Consensus       146 VIlNrVgserH~~llr~Ale~~~gv~vlG~lpr~~~l~lp~RHLGLV~a~E~~~~~~~~~~~a~~v~~~vDld~l~~ia~  225 (451)
T COG1797         146 VILNRVGSERHYELLRDALEEYTGVPVLGYLPRDDDLELPSRHLGLVPASERLELEAKLEALAEVVEKHVDLDALLEIAS  225 (451)
T ss_pred             EEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             99724777889999998755327985798742785567854132653430344489999999999986078988999874


Q ss_pred             H
Q ss_conf             8
Q gi|254780487|r  213 E  213 (217)
Q Consensus       213 ~  213 (217)
                      +
T Consensus       226 ~  226 (451)
T COG1797         226 S  226 (451)
T ss_pred             C
T ss_conf             3


No 8  
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=99.97  E-value=5.6e-31  Score=213.50  Aligned_cols=196  Identities=17%  Similarity=0.222  Sum_probs=153.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCC--CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             2999835898747999999999984048--61201388738068999998557873114430014510347889998502
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYY--WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~--~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
                      |+.||||+|.||||+||+||+++|..++  .+|++.| |++.|+.++..+.+..+...+.    |....          .
T Consensus         1 rVviAGt~S~vGKT~I~~g~m~~L~~~~~~VQ~fKVG-PDYIDP~fH~~aTGr~sRNLDs----F~~~~----------~   65 (464)
T TIGR00379         1 RVVIAGTSSKVGKTTISTGIMKALSRRKLEVQPFKVG-PDYIDPSFHTLATGRKSRNLDS----FFMSE----------A   65 (464)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEC-CCCCCCCCCCCCCCCCCCCCCH----HHHHH----------H
T ss_conf             9788305687547899999999986186324654425-8743788454114786667685----33028----------9


Q ss_pred             CCHHHHHHHHHHC--CEEEEECCCCCCCCC-----CCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH-HCCCE
Q ss_conf             3507886422328--879992276555667-----675308999997479448970577650457999999998-47990
Q gi|254780487|r   82 IIDPATINPPDIN--DSIIIEGIGGLLVPL-----TTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLR-NRNIN  153 (217)
Q Consensus        82 ~i~~~~~~~~~~~--D~viIEGagg~~~~~-----~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~-~~g~~  153 (217)
                      .|...|.+..++.  |+.||||..|+|+++     ....|+|++||.|++|||||++++.=+-+.+..-..+.. +++++
T Consensus        66 ~i~~~F~~~~~~~Gs~~s~IEGv~GLYdg~Py~a~~d~gStA~vAk~L~~PvvLv~n~~~L~~saaAiv~Gy~~fdp~V~  145 (464)
T TIGR00379        66 QIKELFIRHSKGAGSDVSIIEGVRGLYDGIPYSAISDKGSTASVAKALDAPVVLVVNAKRLSRSAAAIVLGYRSFDPDVK  145 (464)
T ss_pred             HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCE
T ss_conf             99999998613478965797274134367688776877518899998659889999564033578677641343089831


Q ss_pred             EEEEEECCCCCCCHH----HHHHHHC-CCCEEEEECCCCCCCHH----------------------HHHHHHHHHHHHHH
Q ss_conf             799997697780059----9999861-99899994788888887----------------------99999997133999
Q gi|254780487|r  154 IIGIAFIGDSMPKVE----ETIVKIG-RIPHLGRLPKIDPIDPD----------------------VLHQKFQEHFTQSL  206 (217)
Q Consensus       154 i~GiIlN~~~~~~~~----~~le~~~-~ipvLG~iP~~~~~~~~----------------------~l~~~~~~~~~~~~  206 (217)
                      |+|||||++..++|.    ..+|+++ ||+|||+|||..++.-|                      .+++..++|+|..+
T Consensus       146 l~GVILN~V~~~rH~~k~k~A~e~L~Pgi~vlG~~pR~~~l~~p~RHLGLVpa~E~l~~~~~~~~~~la~~~e~~lD~~k  225 (464)
T TIGR00379       146 LKGVILNRVGSERHLEKLKTAVEKLAPGIEVLGVIPRKEDLKVPDRHLGLVPAVERLDEIIQQILDWLAEVVEKYLDLDK  225 (464)
T ss_pred             EEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             78788731077446899999988636894588777367532147754653166135317899999999999997449779


Q ss_pred             HHHHHHHH
Q ss_conf             99999985
Q gi|254780487|r  207 LQKYFYES  214 (217)
Q Consensus       207 l~~~~~~~  214 (217)
                      |.+.+++.
T Consensus       226 l~~i~~~~  233 (464)
T TIGR00379       226 LLEIAEKA  233 (464)
T ss_pred             HHHHHCCC
T ss_conf             88874067


No 9  
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.97  E-value=6.1e-30  Score=207.00  Aligned_cols=193  Identities=18%  Similarity=0.237  Sum_probs=142.3

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC--CCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98329998358987479999999999840486--1201388738068999998557873114430014510347889998
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYW--KPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEI   78 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~--KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (217)
                      |+ .|+|+||+||+|||+||+||+++|+++|+  +|+++| |++.|+.++..+++.....-+  +|.....         
T Consensus         1 Mk-gilIAa~~SgsGKTtvt~gL~~aL~~rG~~Vq~FK~G-PDYIDP~~h~~a~G~~~~NLD--~~m~~~~---------   67 (432)
T PRK13896          1 MD-GVVLAGTSSGVGKTVATLAVLQALADAGYDVQPAKAG-PDFIDPSHHEAVVDTPSRSLD--PWLSGED---------   67 (432)
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHHHCCCCCCCC--HHHCCHH---------
T ss_conf             96-2899778999989999999999999784963766668-475198999999689844689--1018989---------


Q ss_pred             HHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH--HHH---CCCE
Q ss_conf             50235078864223288799922765556676753089999974794489705776504579999999--984---7990
Q gi|254780487|r   79 DGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLET--LRN---RNIN  153 (217)
Q Consensus        79 ~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~--~~~---~g~~  153 (217)
                         .+...+.  ....|+.||||++|++++  ...+++++|+.|++|||||++++..+-+.+.+...+  +..   ++++
T Consensus        68 ---~v~~~~~--~~~aDiaviEGvMGLyDG--~~~Sta~lA~~l~~PVvLVvd~~~~~~s~aA~v~G~~~f~~~~~~d~~  140 (432)
T PRK13896         68 ---GMRRTYW--RGTGDVCVVEGMMGLYDG--TVASTAAVAEELDLPVVLVVDAKAGMESVAATALGFQAYADRAGVDID  140 (432)
T ss_pred             ---HHHHHHH--HCCCCEEEEEECCCCCCC--CCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf             ---9999997--279986999612324578--877589999984999899993320188899999999972412476524


Q ss_pred             EEEEEECCCCCCCHHHHHHHHC--CCCEEEEECCCCCCCHHH----------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf             7999976977800599999861--998999947888888879----------------99999971339999999998
Q gi|254780487|r  154 IIGIAFIGDSMPKVEETIVKIG--RIPHLGRLPKIDPIDPDV----------------LHQKFQEHFTQSLLQKYFYE  213 (217)
Q Consensus       154 i~GiIlN~~~~~~~~~~le~~~--~ipvLG~iP~~~~~~~~~----------------l~~~~~~~~~~~~l~~~~~~  213 (217)
                      |+|||+|+...+.+++.+++..  ++||||+||+.+++..++                ..+...+++|...+.+.+++
T Consensus       141 iaGVIlN~v~s~rh~~~l~~al~~~i~vlG~lPr~~~l~lp~RHLGL~~~~E~~~~~~~~~~~~~~vDl~~ll~~a~~  218 (432)
T PRK13896        141 VAGVLAQRAHGGRHADGIRDALPDELTYFGRVPPRSDLEIPDRHLGLHMGSEAPIDDDALDAAAAHIDIERIVDVARA  218 (432)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf             766884267758899999999870894898842477789841025987333442389999999864789999987508


No 10 
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=99.97  E-value=7.5e-31  Score=212.73  Aligned_cols=185  Identities=20%  Similarity=0.196  Sum_probs=146.3

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCC--CEECCC-----------CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH-
Q ss_conf             99983589874799999999998404861--201388-----------7380689999985578731144300145103-
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWK--PIQSGM-----------YEETDSKTIHRIGRIPKSHIIPEKWKLRTPA-   70 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~K--Pv~~G~-----------~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-   70 (217)
                      |+|.||.|++|||++|+||||-|+++|||  ||+++.           .+-.=|+..|.++..-.|...+||..+.+.- 
T Consensus         1 iMV~GTsS~AGKs~l~AaLCRiL~rrGy~VAPFKsQNMSLNSfvt~~~~EiA~AQ~~QA~AAGieP~~~mNPvLLKPkgd   80 (502)
T TIGR00313         1 IMVVGTSSSAGKSLLTAALCRILARRGYRVAPFKSQNMSLNSFVTAEGGEIAIAQALQALAAGIEPSVHMNPVLLKPKGD   80 (502)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             95420115402899999999998527881278501101013331137875513768999863878862348710167888


Q ss_pred             -----------------HHHHHH--HHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCC--CCCCHHHHHHHHCCCEEEE
Q ss_conf             -----------------478899--9850235078864223288799922765556676--7530899999747944897
Q gi|254780487|r   71 -----------------SPHLAA--EIDGVIIDPATINPPDINDSIIIEGIGGLLVPLT--TEYLFIDLIERWQFPIILC  129 (217)
Q Consensus        71 -----------------~~~~~~--~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~--~~~~~~dla~~l~~~vILV  129 (217)
                                       ..+...  ..-.+.|..++..+.++||+||||||||.++-..  .|+.|.++|+.++|.+|||
T Consensus        81 f~SQviv~G~a~g~~~~~~Y~~~~~d~~~~~i~eSle~L~~~Yd~vv~EGAGS~AEINL~~rDLaN~~iA~~~~A~~iLv  160 (502)
T TIGR00313        81 FTSQVIVHGRAVGDMNAQEYYKNKVDFLLKAIKESLEILAEEYDLVVIEGAGSPAEINLKERDLANMRIAELADADVILV  160 (502)
T ss_pred             CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEE
T ss_conf             46678984112466761567779999999999999987520288899826887100053315722478986439767999


Q ss_pred             ECCCCCHHHHH-HHHHHHHHHC-CCEEEEEEECCCCC-----CCHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             05776504579-9999999847-99079999769778-----0059999986199899994788888
Q gi|254780487|r  130 ARTSLGTINHS-LLSLETLRNR-NINIIGIAFIGDSM-----PKVEETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       130 ~~~~~g~i~~~-~l~~~~~~~~-g~~i~GiIlN~~~~-----~~~~~~le~~~~ipvLG~iP~~~~~  189 (217)
                      +|++.|++.+. +-|+..+..+ ...|||||+|+...     ....++||++|||||||+|||.+.+
T Consensus       161 ADIDRGGVFAsi~GTl~LL~~~~r~liKG~vINkfRG~~~vL~~GI~~lEelTGiPVLGv~PY~~~l  227 (502)
T TIGR00313       161 ADIDRGGVFASIYGTLKLLPEEERKLIKGIVINKFRGNVDVLESGIEKLEELTGIPVLGVLPYDENL  227 (502)
T ss_pred             EECCCCCCHHHHHHHHHHCCCCCCCEECEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             7507774324337466618834575003068835468724434456899885484234465012577


No 11 
>PRK00784 cobyric acid synthase; Provisional
Probab=99.97  E-value=2.1e-29  Score=203.67  Aligned_cols=190  Identities=18%  Similarity=0.159  Sum_probs=143.5

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC--CEECCC-----------CCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             983299983589874799999999998404861--201388-----------7380689999985578731144300145
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWK--PIQSGM-----------YEETDSKTIHRIGRIPKSHIIPEKWKLR   67 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K--Pv~~G~-----------~~~~D~~~~~~~~~~~~~~~~~~~~~~~   67 (217)
                      |+|+|+|.||+||||||++++||||.|++.|+|  ||+++.           .+-.-++.+|.......+...+||..+.
T Consensus         2 ~~k~lMv~GT~S~vGKS~l~aaLCRi~~~~G~~VaPFKaQNMslNs~vt~dG~EigrAQ~~QA~Aag~~p~v~MNPILLK   81 (492)
T PRK00784          2 MAKALMVQGTTSDAGKSTLVAGLCRILARRGLRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVLLK   81 (492)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEECCCCCEEHHHHHHHHHHCCCCCCCCCCCEEEC
T ss_conf             86305888678887799999999999995898557857022466517889998336999999998699997676887763


Q ss_pred             CCH------------------HH-HHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCC--CCCHHHHHHHHCCCE
Q ss_conf             103------------------47-889998502350788642232887999227655566767--530899999747944
Q gi|254780487|r   68 TPA------------------SP-HLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTT--EYLFIDLIERWQFPI  126 (217)
Q Consensus        68 ~~~------------------~~-~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~--~~~~~dla~~l~~~v  126 (217)
                      +.-                  .. +.........+..++.++.++||++|+||||++.+....  +..|..+|+.+++||
T Consensus        82 P~gd~~SQVIv~Gk~~g~~~a~~Y~~~~~~~~~~v~~a~~~L~~~~d~iV~EGAGSpaEiNL~~~Di~Nm~~A~~~~apv  161 (492)
T PRK00784         82 PQSDTGSQVIVQGKVVGNMDARDYHDYKPRLLEAVLESLDRLAAEYDLVVVEGAGSPAEINLRDRDIANMGFAEAADAPV  161 (492)
T ss_pred             CCCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf             18998867999997875313999998699999999999999886588999935898200265220024289998659988


Q ss_pred             EEEECCCCCHHHHHH-HHHHHHHHC-CCEEEEEEECCCCC-----CCHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             897057765045799-999999847-99079999769778-----00599999861998999947888888
Q gi|254780487|r  127 ILCARTSLGTINHSL-LSLETLRNR-NINIIGIAFIGDSM-----PKVEETIVKIGRIPHLGRLPKIDPID  190 (217)
Q Consensus       127 ILV~~~~~g~i~~~~-l~~~~~~~~-g~~i~GiIlN~~~~-----~~~~~~le~~~~ipvLG~iP~~~~~~  190 (217)
                      |||+|++.|++...+ -|++.+... ...|+|+|+|+...     ....+++|+.||+||||+|||++++.
T Consensus       162 iLV~DIdRGGvfAsl~GT~~lL~~~eR~li~G~IiNKFRGD~~ll~pG~~~le~~tg~PvlGviP~~~~l~  232 (492)
T PRK00784        162 ILVADIDRGGVFASLVGTLALLSPEERARVKGFVINKFRGDISLLEPGLDWLEELTGIPVLGVLPYLDDLR  232 (492)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCHHHHHHEEEEEEEEECCCHHHHCCHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             99997567642687763887599988711589999764587466355999999986898068614656799


No 12 
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=99.95  E-value=1.3e-26  Score=186.16  Aligned_cols=201  Identities=16%  Similarity=0.133  Sum_probs=141.8

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHH-----HCCCCCCEECC---CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             83299983589874799999999998-----40486120138---87380689999985578731144300145103478
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHAL-----NAYYWKPIQSG---MYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPH   73 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l-----~~~~~KPv~~G---~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (217)
                      +|+|||++|+.++|||+|++||+++|     |++|||||...   ...|.|..+++..++...+  .+.++.+......+
T Consensus         1 arsIyIa~te~~sGKTsVaLGL~~aL~r~g~KVGfFKPI~q~~~~~~~D~~i~Li~~~~~L~~~--~~i~~s~a~~ll~~   78 (702)
T PRK05632          1 SRTIYLAPTGTGVGLTSVSLGLVRALERKGVKVGFFKPIAQPRPDDGPDRSTELLRARLGLPYE--EPLSLSYAEELLAS   78 (702)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCC--CCCCHHHHHHHHHC
T ss_conf             9369996279998799999999999983688479983355478889976079999985598953--36078899999868


Q ss_pred             HHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHH----HHHHHHHHHH-
Q ss_conf             89998502350788642232887999227655566767530899999747944897057765045----7999999998-
Q gi|254780487|r   74 LAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTIN----HSLLSLETLR-  148 (217)
Q Consensus        74 ~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~----~~~l~~~~~~-  148 (217)
                      .........+-..|..+.+++|++||||........+....|+++|+.|++|||||++.+..+..    ...++.+.+. 
T Consensus        79 g~~D~LlE~IV~~y~~l~~~~DvVLVEGs~~~~~~~~~~~lNa~IAknLgA~VILV~~~~~~s~~el~d~i~ia~~~f~~  158 (702)
T PRK05632         79 GQLDVLLEEIVARYHALAKDCDVVLVEGLVPTRKHPFALSLNAEIAKNLGAEVILVSSGGNDTPEELAERIELAARSFGG  158 (702)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99899999999999997538998999488878898604433599999769988999638999999999999999998523


Q ss_pred             HCCCEEEEEEECCCCCCCHH-------HHHH---------HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             47990799997697780059-------9999---------861998999947888888879999999713399
Q gi|254780487|r  149 NRNINIIGIAFIGDSMPKVE-------ETIV---------KIGRIPHLGRLPKIDPIDPDVLHQKFQEHFTQS  205 (217)
Q Consensus       149 ~~g~~i~GiIlN~~~~~~~~-------~~le---------~~~~ipvLG~iP~~~~~~~~~l~~~~~~~~~~~  205 (217)
                      .+|.++.|+|+|+...+...       +.+.         +..++|+||+|||.+.+..+++.++. +++..+
T Consensus       159 ~k~~~vlGvIiNrv~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~lLGvIP~~p~L~aPrV~DIa-~~L~A~  230 (702)
T PRK05632        159 AKNANILGVIINKVNADEQGRTRPDLSEIFDDSSKAAQLFASSPLPLLGVVPWSPDLIAPRVIDIA-KHLGAT  230 (702)
T ss_pred             CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHH-HHHCCE
T ss_conf             069978999984798235556678899864433332113322798769984796002788299999-983989


No 13 
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=99.88  E-value=1.6e-22  Score=160.49  Aligned_cols=189  Identities=18%  Similarity=0.182  Sum_probs=140.3

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC--CEEC-----------CCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             983299983589874799999999998404861--2013-----------887380689999985578731144300145
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWK--PIQS-----------GMYEETDSKTIHRIGRIPKSHIIPEKWKLR   67 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K--Pv~~-----------G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~   67 (217)
                      |+ .|+|.||.|++|||++++||||.+.+++++  ||++           +..+-.-++.+|.......+...++|+.+.
T Consensus         1 ~~-~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLLK   79 (486)
T COG1492           1 MK-AIMVQGTTSDAGKSFLVAGLCRILARRGYRVAPFKSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLLK   79 (486)
T ss_pred             CC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEECCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf             98-53787214776546752453488873577547870654346607877996875506678987399874342877870


Q ss_pred             CCH------------------HH-H-HHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCC--CCCHHHHHHHHCCC
Q ss_conf             103------------------47-8-89998502350788642232887999227655566767--53089999974794
Q gi|254780487|r   68 TPA------------------SP-H-LAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTT--EYLFIDLIERWQFP  125 (217)
Q Consensus        68 ~~~------------------~~-~-~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~--~~~~~dla~~l~~~  125 (217)
                      +.-                  .+ + .........+..++.++.+.+|++++||+|+.......  +..|..+|+..++|
T Consensus        80 P~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dap  159 (486)
T COG1492          80 PCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLDREYDVVVIEGAGSPAEINLRDRDIANMGVAEIADAP  159 (486)
T ss_pred             ECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCEEEEHHCCCC
T ss_conf             35888447999463446657178899988999999999998754105589996379823227663661100220233898


Q ss_pred             EEEEECCCCCHHHHHH-HHHHHHH-HCCCEEEEEEECCCCC-----CCHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             4897057765045799-9999998-4799079999769778-----00599999861998999947888888
Q gi|254780487|r  126 IILCARTSLGTINHSL-LSLETLR-NRNINIIGIAFIGDSM-----PKVEETIVKIGRIPHLGRLPKIDPID  190 (217)
Q Consensus       126 vILV~~~~~g~i~~~~-l~~~~~~-~~g~~i~GiIlN~~~~-----~~~~~~le~~~~ipvLG~iP~~~~~~  190 (217)
                      ||||++++.|++++.+ -|++.+. ...-.|+|+|+|+...     ....++||+.||+|+||++||++..-
T Consensus       160 vILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~tg~~vlGv~P~~~~~~  231 (486)
T COG1492         160 VILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELTGVPVLGVLPYLKDAL  231 (486)
T ss_pred             EEEEEEECCCCEEEEEEEHHEECCHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCC
T ss_conf             899995115645417302122368767600147999631798788745999999861974675652555455


No 14 
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=99.76  E-value=1.4e-17  Score=129.49  Aligned_cols=192  Identities=19%  Similarity=0.173  Sum_probs=125.0

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHH-----HCCCCCCEE--CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             983299983589874799999999998-----404861201--3887380689999985578731144300145103478
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHAL-----NAYYWKPIQ--SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPH   73 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l-----~~~~~KPv~--~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (217)
                      |++.+|+..|++++|||.|++||+|++     +++|||||.  +|...+.....+............+.+..+.......
T Consensus         1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~kPI~~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~~~ae~L~~~   80 (354)
T COG0857           1 MSRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFKPIGTRTGKDADDLTEEDIRATSSSLTYAEPLVLSFAEVLLST   80 (354)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC
T ss_conf             96149984268886288999999999997073269984045556776520689999876520566753000068887415


Q ss_pred             HHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHH----HHHHHHHHHHHH
Q ss_conf             8999850235078864223288799922765556676753089999974794489705776504----579999999984
Q gi|254780487|r   74 LAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTI----NHSLLSLETLRN  149 (217)
Q Consensus        74 ~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i----~~~~l~~~~~~~  149 (217)
                      .....-...+...|..+.+.+|++++||--..+...+....|..+|+.|++++++|++...-+.    ++......++..
T Consensus        81 ~~~d~l~e~i~~~y~e~~~~~~~vv~~g~~~~~~~~~~~~ln~~iA~~Lna~~vlva~~~~~~~~~~~~~i~~~~~~~~~  160 (354)
T COG0857          81 GQDDVLLEEILANYAELAKDADVVVVEGDVPTREGPYALDLNYEIAKNLNAAAVLVARALLVTPYELKSRVELALAAFGA  160 (354)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             64167999999999987236766884253001335764101479885068115431141337766656699999988605


Q ss_pred             CCCEEEEEEECCCCCCCHH-------HHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf             7990799997697780059-------9999861998999947888888879
Q gi|254780487|r  150 RNINIIGIAFIGDSMPKVE-------ETIVKIGRIPHLGRLPKIDPIDPDV  193 (217)
Q Consensus       150 ~g~~i~GiIlN~~~~~~~~-------~~le~~~~ipvLG~iP~~~~~~~~~  193 (217)
                      .+-++.|||+|+.+.....       +.+++ .++.++|.+|...-+....
T Consensus       161 ~~~~l~gVv~N~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~ll~~~~  210 (354)
T COG0857         161 AGNNLAGVVINNAPVDEAGRTEDLLAEFLES-SGIAVVGVLPPNRLLRSSP  210 (354)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHHCCCC
T ss_conf             6883589996578755523244689987630-2543224478778753785


No 15 
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.62  E-value=3.4e-15  Score=114.62  Aligned_cols=165  Identities=21%  Similarity=0.308  Sum_probs=106.5

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH--H
Q ss_conf             83299983589874799999999998404861201388738068999998557873114430014510347889998--5
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEI--D   79 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   79 (217)
                      ++.|++.||+|++|||+++.+|+.+|+...|- ...|    +|+..+           .|..|..+.+...+..-+.  .
T Consensus       244 kkgiiLl~TgS~SGKTFl~T~i~~kL~~kvfv-~KiG----pDvRDI-----------VPsLYllrE~M~ky~SIkI~~r  307 (482)
T PRK06278        244 KKGIILLATGSESGKTFLSTSIVSKLRGKTFV-SKIG----PDVRDI-----------VPSLYLLREPMEKYSSIKISDR  307 (482)
T ss_pred             CCEEEEEECCCCCCCEEHHHHHHHHHCCCEEE-EECC----CCHHHC-----------CHHHHHCCCHHHHCCCEEECCC
T ss_conf             96599984378777431167788875064899-8608----866652-----------5246310421220461685467


Q ss_pred             HCCCHHHH-HH-HHHHCCEEEEECCCCCCCCCCC---CCCHHHHHHHHCCCEEEEECCCCCHHHHHH----HHHHHHHHC
Q ss_conf             02350788-64-2232887999227655566767---530899999747944897057765045799----999999847
Q gi|254780487|r   80 GVIIDPAT-IN-PPDINDSIIIEGIGGLLVPLTT---EYLFIDLIERWQFPIILCARTSLGTINHSL----LSLETLRNR  150 (217)
Q Consensus        80 ~~~i~~~~-~~-~~~~~D~viIEGagg~~~~~~~---~~~~~dla~~l~~~vILV~~~~~g~i~~~~----l~~~~~~~~  150 (217)
                      ++.--..+ .. ..++||++||||+||.+.+...   .++.+++|+.++.||++|++|..+++..+.    .-+..++..
T Consensus       308 GW~~~~efle~vk~sdYd~~iiEGVMgafTg~Ln~k~~YS~aeIak~lg~PvyivS~cnksGIEgAfve~~ay~slLk~~  387 (482)
T PRK06278        308 GWMEPSEFLEFVKNSDYDNYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSKGGIEGAFVELMAYYSLLKEM  387 (482)
T ss_pred             CCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             87689999999734798789985047888887505788768999985599889994255566047899999999999866


Q ss_pred             CCEEEEEEECCCCCCCHHHHHH---HHCCCCEEEE
Q ss_conf             9907999976977800599999---8619989999
Q gi|254780487|r  151 NINIIGIAFIGDSMPKVEETIV---KIGRIPHLGR  182 (217)
Q Consensus       151 g~~i~GiIlN~~~~~~~~~~le---~~~~ipvLG~  182 (217)
                      |+++.|+|+|+.-....-+-+.   +..++.++|+
T Consensus       388 Gv~v~giILNKvYn~~ifekvk~~~~~~~i~~~~V  422 (482)
T PRK06278        388 GVNVAGIILNKVYNMEIFEKVKKIASNLNINVIGV  422 (482)
T ss_pred             CCCEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             97358899741125889999999998659529861


No 16 
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=99.38  E-value=6.1e-12  Score=94.22  Aligned_cols=179  Identities=17%  Similarity=0.144  Sum_probs=99.3

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCC-CHHHHH----------------------HHHHCCCCCCCCC
Q ss_conf             99983589874799999999998404861201388738-068999----------------------9985578731144
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEE-TDSKTI----------------------HRIGRIPKSHIIP   61 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~-~D~~~~----------------------~~~~~~~~~~~~~   61 (217)
                      |.|++...|||||++|+.|+++|...++|-..-..... .+...+                      .............
T Consensus         1 Iav~s~KGGVGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (212)
T pfam01656         1 IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRNL   80 (212)
T ss_pred             CEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCCC
T ss_conf             98976899806999999999999978997899838999962588658764344444410101121002456422245555


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf             30014510347889998502350788642232887999227655566767530899999747944897057765045799
Q gi|254780487|r   62 EKWKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSL  141 (217)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~  141 (217)
                      .+..+.......................+...+|++||++.+|+...      .......-+ -+|+|+....-++..+.
T Consensus        81 ~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~D~viiD~pp~~~~~------~~~al~~ad-~vivv~~p~~~sl~~~~  153 (212)
T pfam01656        81 DPLLLIPSNLSLANFESELILEGGEEGLIKLAYDYVIIDGAPGLGEL------TANALVAAD-ILVVPIEPEGVAVLGAQ  153 (212)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH------HHHHHHCCC-EEEEEECCCHHHHHHHH
T ss_conf             87465335015667777779999998766604998999479975599------999998399-89999489769999999


Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCC--C----HHHHHHHHCCCCEE---EEECCCCCCC
Q ss_conf             999999847990799997697780--0----59999986199899---9947888888
Q gi|254780487|r  142 LSLETLRNRNINIIGIAFIGDSMP--K----VEETIVKIGRIPHL---GRLPKIDPID  190 (217)
Q Consensus       142 l~~~~~~~~g~~i~GiIlN~~~~~--~----~~~~le~~~~ipvL---G~iP~~~~~~  190 (217)
                      ..++.+++.++++.|+|+|+....  .    ..+.+++.+++|++   |+||+...+.
T Consensus       154 ~l~~~~~~l~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~d~~v~  211 (212)
T pfam01656       154 RLLELVERLGLKILGVVLNKVDRGDERHLDKEIEALERKTGIPVLLLLGVIPRDLALS  211 (212)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf             9999999859962299991488998366307899999997899751404116877668


No 17 
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224   Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins.    This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=99.32  E-value=6.2e-12  Score=94.18  Aligned_cols=176  Identities=19%  Similarity=0.171  Sum_probs=113.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHH--HHHHHHHCCCC---CCCC---------------CCC
Q ss_conf             299983589874799999999998404861201388738068--99999855787---3114---------------430
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDS--KTIHRIGRIPK---SHII---------------PEK   63 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~--~~~~~~~~~~~---~~~~---------------~~~   63 (217)
                      .|-|+.=.-|+||||||+-|.=||-.-|-|=+.    -|.|-  -.+.-+++++.   +..+               +..
T Consensus         2 ~I~iASGKGGtGKTT~tANLgVALA~~Gk~V~~----~DADI~MANL~LiLgmE~~~VTLhDVLAGeA~i~DAIY~gp~G   77 (258)
T TIGR01969         2 IITIASGKGGTGKTTITANLGVALAKLGKKVLV----LDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPEG   77 (258)
T ss_pred             EEEEEECCCCCCHHHEEEHHHHHHHHCCCEEEE----EECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf             889997788986140000077889860976899----9467667768988446888967522134456100110028898


Q ss_pred             --CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf             --014510347889998502350788642232887999227655566767530899999747944897057765045799
Q gi|254780487|r   64 --WKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSL  141 (217)
Q Consensus        64 --~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~  141 (217)
                        +......|-....+=.-++.......+.+.+|++||.-.-|+.-....-.+-+|       ..+||++..-.||.+++
T Consensus        78 nV~V~PagvSLEg~rKA~~~~L~dV~~~i~~~~D~lLIDAPAGL~~~a~~Al~~a~-------elLLVvNPEi~SItDaL  150 (258)
T TIGR01969        78 NVKVIPAGVSLEGLRKADPDKLEDVLKEIIDDTDFLLIDAPAGLERDAVTALAAAD-------ELLLVVNPEISSITDAL  150 (258)
T ss_pred             CEEEECCCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCC-------CCEEEECCCHHHHHHHH
T ss_conf             44785061221000126833328999987204377887478983378999998618-------66486676544677788


Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCC---HHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             9999998479907999976977800---599999861998999947888888
Q gi|254780487|r  142 LSLETLRNRNINIIGIAFIGDSMPK---VEETIVKIGRIPHLGRLPKIDPID  190 (217)
Q Consensus       142 l~~~~~~~~g~~i~GiIlN~~~~~~---~~~~le~~~~ipvLG~iP~~~~~~  190 (217)
                      -+...+++.|.++.|+|+|+...+.   .++.+|.....||||+||..++..
T Consensus       151 K~k~va~~lGt~ilG~vlNRv~~~~tel~~~eiE~iLevPVl~~vPEDP~VR  202 (258)
T TIGR01969       151 KVKIVAEKLGTAILGVVLNRVTRDKTELGREEIEAILEVPVLGVVPEDPEVR  202 (258)
T ss_pred             HHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCEEEEECCCHHHH
T ss_conf             9999987608832468996023666637888999884797389856984344


No 18 
>CHL00175 minD septum-site determining protein; Validated
Probab=99.14  E-value=7.8e-10  Score=81.05  Aligned_cols=181  Identities=17%  Similarity=0.098  Sum_probs=103.4

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE-------------CCCCCCCHHHHHHHHHCCCCCCCC--CCC--
Q ss_conf             983299983589874799999999998404861201-------------388738068999998557873114--430--
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ-------------SGMYEETDSKTIHRIGRIPKSHII--PEK--   63 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~-------------~G~~~~~D~~~~~~~~~~~~~~~~--~~~--   63 (217)
                      |+|-|-|+.-.-|||||++|.-|+.+|...|+|=.-             -|.... ......+..........  +..  
T Consensus        12 m~kiIaV~s~KGGVGKTT~a~NLa~aLA~~G~kVlliD~D~~~~n~~~~lg~~~~-~~~~~~~vl~g~~~l~~~~i~~~~   90 (279)
T CHL00175         12 MTRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENR-VVYTAMEVLEGECRLDQALIRDKR   90 (279)
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC-CCCCHHHHCCCCCCCCCCEEECCC
T ss_conf             8869999748998448999999999999789988999578999987532686666-667476640787664301342577


Q ss_pred             --CCCCCCHHHH-HHHHHHHCCCHHHHHH-HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf             --0145103478-8999850235078864-22328879992276555667675308999997479448970577650457
Q gi|254780487|r   64 --WKLRTPASPH-LAAEIDGVIIDPATIN-PPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINH  139 (217)
Q Consensus        64 --~~~~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~  139 (217)
                        ....-+.+.. ................ ...+||++||+...|+..      .........+ .+|+|+....-++..
T Consensus        91 ~~~l~ll~~~~~~~~~~~~~~~~~~ll~~l~~~~yDyiiID~ppgl~~------~~~~al~aad-~viIvttpe~~al~d  163 (279)
T CHL00175         91 WPNLSLLPISKNRQRYNVTRKNMNMLVDSLKERNYDYILIDCPAGIDV------GFINAIAPAK-EAIVVTTPEITAIRD  163 (279)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH------HHHHHHHHCC-EEEEECCCCHHHHHH
T ss_conf             787799978970544574199999999999727999999818998889------9999999789-069978997899999


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCC-------HHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             999999998479907999976977800-------59999986199899994788888
Q gi|254780487|r  140 SLLSLETLRNRNINIIGIAFIGDSMPK-------VEETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       140 ~~l~~~~~~~~g~~i~GiIlN~~~~~~-------~~~~le~~~~ipvLG~iP~~~~~  189 (217)
                      +.-.++.++..+++..++|.|+.....       ..+.+++..++|+||.||+.+.+
T Consensus       164 a~~~i~~~~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~~~~~l~v~~lg~IP~D~~v  220 (279)
T CHL00175        164 ADRVAGLLEANGIYNIKLLVNRVRPDMIKANDMMSVRDVQEMLGIPLLGAIPEDENV  220 (279)
T ss_pred             HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCHHH
T ss_conf             999999999759986213533564554354553449999997199346576787789


No 19 
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.11  E-value=3.8e-09  Score=76.70  Aligned_cols=181  Identities=13%  Similarity=0.047  Sum_probs=101.8

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHC-CCCCCEECCCCCCCHHHHHHH----------HHC----CCCCCCCCCCCC
Q ss_conf             98329998358987479999999999840-486120138873806899999----------855----787311443001
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNA-YYWKPIQSGMYEETDSKTIHR----------IGR----IPKSHIIPEKWK   65 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~-~~~KPv~~G~~~~~D~~~~~~----------~~~----~~~~~~~~~~~~   65 (217)
                      |+|+|-|.| ..|+|||++|.-|..+|.. .+.|-.+-|+++-.|......          ...    .......+...-
T Consensus         1 m~~~iaiyG-KGGIGKSTTt~NLaaALA~l~GkrVl~IgcDPk~dST~~l~g~~~~~tv~d~l~~~~~~~~~~e~ii~~g   79 (275)
T PRK13233          1 MTRKIAIYG-KGGIGKSTTTQNTAAAMAHFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTG   79 (275)
T ss_pred             CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHCC
T ss_conf             973899989-9854465459999999996479889997978876136776089878839999986288755388887537


Q ss_pred             CCCCH-----HHHHHHHHHHCCCH------HHHHHHHHHCCEEEEECCCCCCCCCCCC---CCHHHHHHHHCCCEEEEEC
Q ss_conf             45103-----47889998502350------7886422328879992276555667675---3089999974794489705
Q gi|254780487|r   66 LRTPA-----SPHLAAEIDGVIID------PATINPPDINDSIIIEGIGGLLVPLTTE---YLFIDLIERWQFPIILCAR  131 (217)
Q Consensus        66 ~~~~~-----~~~~~~~~~~~~i~------~~~~~~~~~~D~viIEGagg~~~~~~~~---~~~~dla~~l~~~vILV~~  131 (217)
                      +....     .|.-.....+..+-      ..+.....++|++++.-.|.+.++...-   ...+|       .|++|+.
T Consensus        80 ~~gv~cVEaGgp~pG~gcagrgii~~~~lle~~~~~~~~~D~Vl~DvLGdVvcGgFa~Pir~~~Ad-------eV~IVts  152 (275)
T PRK13233         80 FKGIRCVESGGPEPGVGCAGRGVITAITLMEEHGAYEDDLDFVFFDVLGDVVCGGFAMPIRDGKAQ-------EVYIVAS  152 (275)
T ss_pred             CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-------EEEEEEC
T ss_conf             898579868999866655763123588889980974346888998415611055510343136688-------8999946


Q ss_pred             CCCCHHHHH---HHHHHH-HHHCCCEEEEEEECCCCCCCHHH---HHHHHCCCCEEEEECCCCCC
Q ss_conf             776504579---999999-98479907999976977800599---99986199899994788888
Q gi|254780487|r  132 TSLGTINHS---LLSLET-LRNRNINIIGIAFIGDSMPKVEE---TIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       132 ~~~g~i~~~---~l~~~~-~~~~g~~i~GiIlN~~~~~~~~~---~le~~~~ipvLG~iP~~~~~  189 (217)
                      +...++..+   .-++.. ..+.+.++.|+|+|+...+...+   .+.+..+.++++.||+...+
T Consensus       153 ~E~msL~aannI~~~l~~~~~~~~~~l~Gii~N~r~~~~e~~~v~~fa~~ig~~vi~~IPr~~~V  217 (275)
T PRK13233        153 GEMMALYAANNICKGLVKYAEQSGVRLGGIICNSRNVDGELELLEEFTDAIGTQLIHFVPRDNIV  217 (275)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHHH
T ss_conf             83799999999999999985058963899997178886079999999998599579977897788


No 20 
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the  protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.10  E-value=1.9e-09  Score=78.64  Aligned_cols=174  Identities=15%  Similarity=0.124  Sum_probs=95.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHH----------HHHHH-----CCCCCCCCCCCCCCC
Q ss_conf             329998358987479999999999840486120138873806899----------99985-----578731144300145
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKT----------IHRIG-----RIPKSHIIPEKWKLR   67 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~----------~~~~~-----~~~~~~~~~~~~~~~   67 (217)
                      |+|-|.|- -|||||++|+-|+.+|...|.|=.+-++....|...          +....     ........+-..-+.
T Consensus         1 ~~iaiyGK-GGVGKTTts~NLaaaLA~~G~rVl~iD~Dp~~~st~~L~g~~~~~~i~~~~~~~~~~~~~~~~~ii~~g~~   79 (212)
T cd02117           1 RQIAIYGK-GGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFG   79 (212)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf             95999889-83568778999999999869969999038998733031199778719999875278664456678996688


Q ss_pred             ----CCH-HHHHHHHHHHCC------CHHHHHHHHHHCCEEEEECCC-----CCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf             ----103-478899985023------507886422328879992276-----5556676753089999974794489705
Q gi|254780487|r   68 ----TPA-SPHLAAEIDGVI------IDPATINPPDINDSIIIEGIG-----GLLVPLTTEYLFIDLIERWQFPIILCAR  131 (217)
Q Consensus        68 ----~~~-~~~~~~~~~~~~------i~~~~~~~~~~~D~viIEGag-----g~~~~~~~~~~~~dla~~l~~~vILV~~  131 (217)
                          -+. .|.......+..      ..........++|++|+.-.|     |+..|+..  ..+|       .|++|+.
T Consensus        80 gv~~veaggp~~g~~~ag~~i~~~~~ll~~~~~~~~~~D~IliD~lGdvv~~gf~~pi~~--~~Ad-------~vlIvtt  150 (212)
T cd02117          80 GVKCVESGGPEPGVGCAGRGVITAVNLLEKEGFAEDDLDVVLYDVLGDVVCGGFAMPIRE--GKAD-------EIYIVTS  150 (212)
T ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCCC--CCCC-------EEEEECC
T ss_conf             708998899776765454117889999997410025799999965885403563343211--6688-------8999806


Q ss_pred             CCCCHH---HHHHHHHHHHHHC-CCEEEEEEECCCCCCCHHHH---HHHHCCCCEEEEECCC
Q ss_conf             776504---5799999999847-99079999769778005999---9986199899994788
Q gi|254780487|r  132 TSLGTI---NHSLLSLETLRNR-NINIIGIAFIGDSMPKVEET---IVKIGRIPHLGRLPKI  186 (217)
Q Consensus       132 ~~~g~i---~~~~l~~~~~~~~-g~~i~GiIlN~~~~~~~~~~---le~~~~ipvLG~iP~~  186 (217)
                      +.--++   ++.+-+++.++++ ++++.|+|.|+...+...+.   +.+..++|+++.||+.
T Consensus       151 ~E~~Al~~a~~l~k~I~~~~~~~n~~l~GiI~N~~~~~~~~~~i~~f~~~~g~~vl~~IP~d  212 (212)
T cd02117         151 GEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQVIHFVPRD  212 (212)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCC
T ss_conf             93578898899999999997367981489998467888649999999998399189974899


No 21 
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.08  E-value=2.2e-09  Score=78.26  Aligned_cols=160  Identities=19%  Similarity=0.277  Sum_probs=88.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH--HHHHHHCCCCCCCC-----CCCCCCCCCHH-----
Q ss_conf             2999835898747999999999984048612013887380689--99998557873114-----43001451034-----
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK--TIHRIGRIPKSHII-----PEKWKLRTPAS-----   71 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~-----   71 (217)
                      +|-|+.-.-|||||++|+.|+++++....        -|.|..  .+...++.......     ..... ..+..     
T Consensus         1 kIaV~SgKGGVGKTT~a~nLA~~l~~V~l--------iD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~g   71 (179)
T cd03110           1 QIAVISGKGGTGKTTVTAALAALLKNVVL--------ADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAV-IDPELCISCG   71 (179)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHCCCCEE--------EEECCCCCCHHHHCCCCCCCCEEEEECCCCCE-ECHHHHHHCC
T ss_conf             98999589986099999999997428719--------99418998577771876563212230465335-1506653235


Q ss_pred             --HHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             --788999850235078864223288799922765556676753089999974794489705776504579999999984
Q gi|254780487|r   72 --PHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRN  149 (217)
Q Consensus        72 --~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~  149 (217)
                        .......   ...........++|++||....|+.....      ......+ -+|+|+....-++.++.-.++.+++
T Consensus        72 ~~~~~~~~~---~~~~~~~~~~~~~D~viiD~Ppg~~~~~~------~al~~ad-~~iiVttP~~~si~d~~r~i~l~~~  141 (179)
T cd03110          72 LCGKLVTEV---RKHAKEIAKAEGAELIIIDGPPGIGCPVI------ASLTGAD-AALLVTEPTPSGLHDLERAVELVRH  141 (179)
T ss_pred             CHHHHHHHH---HHHHHHHHHCCCCCEEEEECCCCCCHHHH------HHHHCCC-EEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf             176889999---99999986443799899818999757899------9997399-4999819947899999999999998


Q ss_pred             CCCEEEEEEECCCCCC-C----HHHHHHHHCCCCEEEEEC
Q ss_conf             7990799997697780-0----599999861998999947
Q gi|254780487|r  150 RNINIIGIAFIGDSMP-K----VEETIVKIGRIPHLGRLP  184 (217)
Q Consensus       150 ~g~~i~GiIlN~~~~~-~----~~~~le~~~~ipvLG~iP  184 (217)
                      .|+++ |+|+|+.... .    .++..++ .++|+||.||
T Consensus       142 ~~~~~-gvV~Nr~~~~~~~~~~i~~~~~~-~~vp~LG~iP  179 (179)
T cd03110         142 FGIPV-GVVINKYDLNDEIAEEIEDYCEE-EGIPILGKIP  179 (179)
T ss_pred             CCCCE-EEEEECCCCCCCCHHHHHHHHHH-HCCCEEEECC
T ss_conf             29978-99996887887634899999998-0999898387


No 22 
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.07  E-value=1.6e-09  Score=79.05  Aligned_cols=178  Identities=16%  Similarity=0.190  Sum_probs=104.9

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCC----CCCHHHHH--
Q ss_conf             983299983589874799999999998404861201388738068999998557873114430014----51034788--
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKL----RTPASPHL--   74 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--   74 (217)
                      |++.|-|.|-+ |+|||++|+-|..+|...|.|-++-|+.+..|.....  .+...+ ..+..+..    .....+..  
T Consensus         1 ~~~~iaiyGKG-GIGKSTttaNlsaALA~~GkkV~~IgcDPk~DsT~~L--~g~~~~-tild~l~~~~~~~~~~~~ed~~   76 (269)
T PRK13185          1 MALVLAVYGKG-GIGKSTTSSNLSAALAKLGKKVLQIGCDPKHDSTFTL--TGKLVP-TVIDILEEVDFHSEELRPEDFV   76 (269)
T ss_pred             CCEEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHC--CCCCCC-CHHHHHHHCCCCHHHCCHHHHH
T ss_conf             95399997899-5478889999999999769938998189973230112--599878-7899997438760212566776


Q ss_pred             -----------------HHHHHHCCCHHHHH-----HHHHHCCEEEEECCCCCCCCCC-CCCCHHHHHHHHCCCEEEEEC
Q ss_conf             -----------------99985023507886-----4223288799922765556676-753089999974794489705
Q gi|254780487|r   75 -----------------AAEIDGVIIDPATI-----NPPDINDSIIIEGIGGLLVPLT-TEYLFIDLIERWQFPIILCAR  131 (217)
Q Consensus        75 -----------------~~~~~~~~i~~~~~-----~~~~~~D~viIEGagg~~~~~~-~~~~~~dla~~l~~~vILV~~  131 (217)
                                       .....+..+..++.     .+.+++|+++..-.|++..+.. ....-+|       .+++|++
T Consensus        77 ~~G~~gv~cvEaGGP~pG~GCaGrgi~~~~~~L~~~~~~~~~D~Vl~DvlgdVvCGGFa~Pi~~Ad-------~~~IVts  149 (269)
T PRK13185         77 FEGYNGVDCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGGFAAPLQYAD-------YALIVTA  149 (269)
T ss_pred             HCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHCCC-------EEEEEEC
T ss_conf             337677056643899998776764318999999872874337879995367433365557510088-------8999925


Q ss_pred             CCCCHHHH---HHHHHHHHH-HCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             77650457---999999998-47990799997697780059999986199899994788888
Q gi|254780487|r  132 TSLGTINH---SLLSLETLR-NRNINIIGIAFIGDSMPKVEETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       132 ~~~g~i~~---~~l~~~~~~-~~g~~i~GiIlN~~~~~~~~~~le~~~~ipvLG~iP~~~~~  189 (217)
                      ....++..   ....++... +.+.++.|+|.|+....+..+.+.+.++.|++|.||+.+.+
T Consensus       150 ~e~~al~aAnnI~~~i~~~a~~~~~rl~GiI~Nr~~~~d~v~~fa~~~g~~vl~~IP~~~~V  211 (269)
T PRK13185        150 NDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSGGTDQIDKFNERVGLRTLAHVPDLDAI  211 (269)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEECCCCHHH
T ss_conf             30878999999999998653015853232576168837799999998699769978997889


No 23 
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.04  E-value=3.3e-09  Score=77.10  Aligned_cols=175  Identities=17%  Similarity=0.207  Sum_probs=101.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC----CHHHHH-----
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451----034788-----
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRT----PASPHL-----   74 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----   74 (217)
                      +|-|.|-+ |+|||++|+-|..+|...|.|-++-|+.+..|.....  .+...+ ..+..+....    ...++.     
T Consensus         2 kiaiyGKG-GIGKSTttaNl~aaLA~~G~kVl~IgcDpk~Dst~~L--~g~~~~-tvld~l~~~~~~~~~~~~~d~v~~g   77 (267)
T cd02032           2 VLAVYGKG-GIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTL--TGFLIP-TVIDILEEVDFHYEELWPEDVIYEG   77 (267)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH--CCCCCC-CHHHHHHHHCCCHHHCCHHHHHHCC
T ss_conf             79997799-6578778999999999879959997789951556752--698868-3999998608866641477875307


Q ss_pred             --------------HHHHHHCCCHHHHH-----HHHHHCCEEEEECCCCCCCC-CCCCCCHHHHHHHHCCCEEEEECCCC
Q ss_conf             --------------99985023507886-----42232887999227655566-76753089999974794489705776
Q gi|254780487|r   75 --------------AAEIDGVIIDPATI-----NPPDINDSIIIEGIGGLLVP-LTTEYLFIDLIERWQFPIILCARTSL  134 (217)
Q Consensus        75 --------------~~~~~~~~i~~~~~-----~~~~~~D~viIEGagg~~~~-~~~~~~~~dla~~l~~~vILV~~~~~  134 (217)
                                    .....+..+...+.     .+.+++|++++.-.|++..+ ......-+|       .+++|++...
T Consensus        78 ~~gv~cvEaGgP~pg~Gcagrgi~~~~~lL~~l~~~~~~D~Vl~DvlgdVvcgGFa~pi~~Ad-------~~~iVTs~e~  150 (267)
T cd02032          78 YGGVDCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGGFAAPLNYAD-------YALIVTDNDF  150 (267)
T ss_pred             CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC-------EEEEEECCCH
T ss_conf             678457665899999887764048999999871664347789995366544566567610068-------8999956718


Q ss_pred             CHHHHH---HHHHHHHH-HCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             504579---99999998-47990799997697780059999986199899994788888
Q gi|254780487|r  135 GTINHS---LLSLETLR-NRNINIIGIAFIGDSMPKVEETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       135 g~i~~~---~l~~~~~~-~~g~~i~GiIlN~~~~~~~~~~le~~~~ipvLG~iP~~~~~  189 (217)
                      .++.++   ...++... ..+.++.|+|.|+....+..+.+.+.+++|++|.||+.+..
T Consensus       151 ~sl~aAn~I~~~i~~~~~~~~~rl~GlI~Nr~~~~~~i~~fa~~lg~~lig~VP~d~~V  209 (267)
T cd02032         151 DSIFAANRIAAAVREKAKTYKVRLAGLIANRTDKTDLIDKFVEAVGMPVLAVLPLIEDI  209 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEECCCCHHH
T ss_conf             78999999999999975337976422787469857899999997299469966993388


No 24 
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.03  E-value=8.6e-09  Score=74.52  Aligned_cols=178  Identities=11%  Similarity=0.054  Sum_probs=106.7

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCC-------------CCCCCCCCCC
Q ss_conf             983299983589874799999999998404861201388738068999998557873-------------1144300145
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKS-------------HIIPEKWKLR   67 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~-------------~~~~~~~~~~   67 (217)
                      |.++|-|.|-+ |+|||+++.-|..++.. +.|-.+-|+.+..|.....  .+...+             ..++...-+.
T Consensus         1 ~m~~iAiyGKG-GIGKSTt~~NlaaalA~-g~rVl~igcDpk~dst~~L--~G~~~ptvl~~l~~~~~~~~~dvv~~g~~   76 (264)
T PRK13231          1 VLKKIAIYGKG-GIGKSTTVSNMAAAYSS-DNSTLVIGCDPKADTTRTL--VGKRIPTVLDTLKDNRQPELEDIIYEGYN   76 (264)
T ss_pred             CCEEEEEECCC-CCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHH--HCCCCCCHHHHHHHCCCCCHHHHEEECCC
T ss_conf             94289997898-54788899999999987-9977998568885024676--19998838898631277776563121789


Q ss_pred             C-----CHHHHHHHHHHHCCCHHHH------HHHHHHCCEEEEECCCCCCCCCCCC---CCHHHHHHHHCCCEEEEECCC
Q ss_conf             1-----0347889998502350788------6422328879992276555667675---308999997479448970577
Q gi|254780487|r   68 T-----PASPHLAAEIDGVIIDPAT------INPPDINDSIIIEGIGGLLVPLTTE---YLFIDLIERWQFPIILCARTS  133 (217)
Q Consensus        68 ~-----~~~~~~~~~~~~~~i~~~~------~~~~~~~D~viIEGagg~~~~~~~~---~~~~dla~~l~~~vILV~~~~  133 (217)
                      .     .-.|.-.....+.-+..++      .....+.|++++.-.|++..+...-   ...+|       .+++|++..
T Consensus        77 gi~cvesGgpepg~gcagrgi~~~~~lLe~~~~~~~~~D~vl~Dvlgdvvcggfa~Pir~~~Ad-------ev~IVts~e  149 (264)
T PRK13231         77 NTLCVESGGPEPGVGCAGRGVIVAMNLLEKLGVFDNDPDVVIYDVLGDVVCGGFSVPLREDYAD-------EVYIVTSGE  149 (264)
T ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEECCCCCCCCC-------EEEEEECCC
T ss_conf             8499737998877665652176898999872642247987999435872056670455426698-------899994785


Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH---HHHHCCCCEEEEECCCCCC
Q ss_conf             6504579999999984799079999769778005999---9986199899994788888
Q gi|254780487|r  134 LGTINHSLLSLETLRNRNINIIGIAFIGDSMPKVEET---IVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       134 ~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~~~~---le~~~~ipvLG~iP~~~~~  189 (217)
                      ..++..+.-....+++.+.++.|+|.|+.+.+...+.   +.+..|.|++|.||+...+
T Consensus       150 ~msLyaAnnI~~~i~~~~~rl~GiI~N~r~~~~e~~iv~~fa~~~g~~vl~~IPr~~~V  208 (264)
T PRK13231        150 YMSLYAANNIAKGIKKLKGKLGGIICNCRNVKNEVEIVSEFASLIGSRIIGIIPRSNLV  208 (264)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf             89999999999999995464420896068988779999999997199689966894788


No 25 
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=98.96  E-value=8e-08  Score=68.43  Aligned_cols=153  Identities=18%  Similarity=0.144  Sum_probs=97.9

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf             99983589874799999999998404861201388738068999998557873114430014510347889998502350
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIID   84 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   84 (217)
                      |.|+...-|+|||++++.|+.+|...++|-.-    -|.|.      .+.+    .  |..++.+.......+..     
T Consensus         2 i~v~s~kggvgkst~~~~la~~l~~~g~~v~~----~d~di------~gps----i--p~~~rGp~~~~~i~q~l-----   60 (169)
T cd02037           2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGL----LDADI------YGPS----I--PKMWRGPMKMGAIKQFL-----   60 (169)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE----EEEEC------CCCC----C--CEEEECHHHHHHHHHHH-----
T ss_conf             89974999881999999999999987997899----97137------9997----5--50120473899999999-----


Q ss_pred             HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             788642232887999227655566767530899999747-9448970577650457999999998479907999976977
Q gi|254780487|r   85 PATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDS  163 (217)
Q Consensus        85 ~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~  163 (217)
                        ....-.+.|++||.-.-|..+.      ...++..+. -.+|+|+....-++.++.-+++++++.++++.|+|.|...
T Consensus        61 --~~~~w~~lDyLIID~PPGtgD~------~lt~~~~~~~d~~IvVTTP~~~s~~Da~r~i~~~~~~~i~i~GvVeNMs~  132 (169)
T cd02037          61 --TDVDWGELDYLVIDMPPGTGDE------HLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSY  132 (169)
T ss_pred             --HHCCCCCCCEEEEECCCCCCHH------HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             --8525466788999689998707------78798750567479994695889999999999999759970799987966


Q ss_pred             C--C-----------CHHHHHHHHCCCCEEEEECCC
Q ss_conf             8--0-----------059999986199899994788
Q gi|254780487|r  164 M--P-----------KVEETIVKIGRIPHLGRLPKI  186 (217)
Q Consensus       164 ~--~-----------~~~~~le~~~~ipvLG~iP~~  186 (217)
                      .  +           ...+.+.+..++|+||.||..
T Consensus       133 ~~c~~c~~~~~ifg~~~~~~la~~~~i~~Lg~IP~d  168 (169)
T cd02037         133 FVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLD  168 (169)
T ss_pred             CCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCC
T ss_conf             607999973527888449999999599989872899


No 26 
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702    This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=98.93  E-value=1.1e-08  Score=73.88  Aligned_cols=156  Identities=13%  Similarity=0.128  Sum_probs=106.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC----------CEECCCCCCCH-----HHHHHHHHCCCCC----CC-CCC
Q ss_conf             3299983589874799999999998404861----------20138873806-----8999998557873----11-443
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK----------PIQSGMYEETD-----SKTIHRIGRIPKS----HI-IPE   62 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K----------Pv~~G~~~~~D-----~~~~~~~~~~~~~----~~-~~~   62 (217)
                      |.|.||.-.++.|||++|+-++.+|-++|||          |++.|.....+     ..++.....+...    .. .-.
T Consensus        20 K~l~itS~~~~eGKsT~S~NiA~~fAqaGyKTLlIDgD~R~sv~~~~Fk~~n~~~GLtn~L~g~~dl~~~i~~T~isenL   99 (207)
T TIGR01007        20 KVLLITSVKAGEGKSTTSANIAVSFAQAGYKTLLIDGDMRNSVMSGTFKSQNKIKGLTNFLSGNTDLSDAICETNISENL   99 (207)
T ss_pred             EEEEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHCCCCCCCC
T ss_conf             58998411058886241078899998568558887546586603678658887656333221454533342026546787


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf             00145103478899985023507886422328879992276555667675308999997479448970577650457999
Q gi|254780487|r   63 KWKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLL  142 (217)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l  142 (217)
                      ...-..|.+|.-.+.+.......-...+.+.+|++||..+      +..--..|.+...-==.+|||++++.---+..--
T Consensus       100 ~vi~sG~vPPNPt~LL~s~~F~~l~e~~~~~fD~iiiDTP------Pig~V~DAai~a~~~d~~~LV~~A~~~~k~~v~K  173 (207)
T TIGR01007       100 DVITSGPVPPNPTELLQSSNFKTLIETLRKYFDYIIIDTP------PIGTVIDAAIIARAVDASILVTDAGKIKKREVKK  173 (207)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC------CCCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHH
T ss_conf             2751788787754788889999999998716888999518------8666788999998729779887225326467899


Q ss_pred             HHHHHHHCCCEEEEEEECCCCC
Q ss_conf             9999984799079999769778
Q gi|254780487|r  143 SLETLRNRNINIIGIAFIGDSM  164 (217)
Q Consensus       143 ~~~~~~~~g~~i~GiIlN~~~~  164 (217)
                      +.+.+++-|-+++|||||+...
T Consensus       174 AK~~LEq~G~~~LGvvLNK~d~  195 (207)
T TIGR01007       174 AKEQLEQAGSKFLGVVLNKVDI  195 (207)
T ss_pred             HHHHHHHHCCCEEEEEECCCCC
T ss_conf             9999986178411588888257


No 27 
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.91  E-value=1.9e-08  Score=72.30  Aligned_cols=146  Identities=21%  Similarity=0.230  Sum_probs=92.0

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHH--HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             9998358987479999999999840486120138873806899--99985578731144300145103478899985023
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKT--IHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI   82 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (217)
                      |-|+...-|||||++++-|+.+|...++|-..-    |.|...  +....+...          +....           
T Consensus         2 Iav~s~KGGVGKTT~a~NLA~aLa~~g~~vllv----D~D~~~~~l~~~~~~~~----------~~~~~-----------   56 (179)
T cd02036           2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLI----DADLGLRNLDLILGLEN----------RVVYT-----------   56 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE----ECCCCCCCCHHHCCCCC----------CCCCH-----------
T ss_conf             899739998709999999999999779918999----58999998366617655----------66531-----------


Q ss_pred             CHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             50788642232887999227655566767530899999747944897057765045799999999847990799997697
Q gi|254780487|r   83 IDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGD  162 (217)
Q Consensus        83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~  162 (217)
                         ....+  ..|++||....|+..      ........-+ -+++|+....-++..+....+.+++.+.+..|+|+|+.
T Consensus        57 ---~~~vl--~gD~viiD~ppg~~~------~~~~~l~~ad-~vlvv~~p~~~sl~~~~~~~~~~~~~~~~~~~vv~Nr~  124 (179)
T cd02036          57 ---LHDVL--AGDYILIDSPAGIER------GFITAIAPAD-EALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRV  124 (179)
T ss_pred             ---HHCCC--CCCEEEEECCCCCCH------HHHHHHHHCC-CCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             ---31126--699999979999888------9999998468-12563788588999999999999825996469998454


Q ss_pred             CCC-----CHHHHHHHHCCCCEEEEECCCC
Q ss_conf             780-----0599999861998999947888
Q gi|254780487|r  163 SMP-----KVEETIVKIGRIPHLGRLPKID  187 (217)
Q Consensus       163 ~~~-----~~~~~le~~~~ipvLG~iP~~~  187 (217)
                      ...     ...+.+++..++|++|.||+..
T Consensus       125 ~~~~~~~~~~~~~~~~~l~~~vlg~IP~d~  154 (179)
T cd02036         125 RPDMVEGGDMVEDIEEILGVPLLGVIPEDP  154 (179)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEECCCCH
T ss_conf             676663677999999855996798877988


No 28 
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=98.91  E-value=4.4e-08  Score=70.09  Aligned_cols=180  Identities=13%  Similarity=0.065  Sum_probs=101.8

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHC-------------CCCCCCCCCCCCC-
Q ss_conf             98329998358987479999999999840486120138873806899999855-------------7873114430014-
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGR-------------IPKSHIIPEKWKL-   66 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~-------------~~~~~~~~~~~~~-   66 (217)
                      |. +|-|-|-+ |||||++|.-|..+|...|.|=.+-|+++-.|......-..             .......+...-+ 
T Consensus         1 m~-~iaiyGKG-GVGKSTtt~NLaAALA~~GkkVl~IgcDPk~dsT~~L~gg~~~~tvld~l~~~~~~~~ledvi~~g~~   78 (274)
T PRK13235          1 MR-KVAIYGKG-GIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLQQKTVLDTLREEGEDVELEDIIKEGYG   78 (274)
T ss_pred             CC-EEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHEEECCC
T ss_conf             96-79997998-55476789999999997899799989898453667873899899789999862877677894431789


Q ss_pred             ----CCCHHHHHHHHHHHCCCHHHHHHH--------HHHCCEEEEECCCCCCCCCCCC---CCHHHHHHHHCCCEEEEEC
Q ss_conf             ----510347889998502350788642--------2328879992276555667675---3089999974794489705
Q gi|254780487|r   67 ----RTPASPHLAAEIDGVIIDPATINP--------PDINDSIIIEGIGGLLVPLTTE---YLFIDLIERWQFPIILCAR  131 (217)
Q Consensus        67 ----~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~D~viIEGagg~~~~~~~~---~~~~dla~~l~~~vILV~~  131 (217)
                          ...-.|.-.....+..+..++..+        ....|++++.-.|.+-.+...-   ...+|       .|++|+.
T Consensus        79 gi~cveaggp~pg~gcagrgii~~~~~L~~l~~~~~~~~~DyVl~DvLGdvvcggFa~pir~~~A~-------eV~IVts  151 (274)
T PRK13235         79 NTRCTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDGKAE-------EIYIVCS  151 (274)
T ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-------EEEEEEC
T ss_conf             818986899875667576315258999988177543357768998137853124511551006587-------8999916


Q ss_pred             CCCCHH---HHHHHHHHHHHH-CCCEEEEEEECCCCCCCHH---HHHHHHCCCCEEEEECCCCCC
Q ss_conf             776504---579999999984-7990799997697780059---999986199899994788888
Q gi|254780487|r  132 TSLGTI---NHSLLSLETLRN-RNINIIGIAFIGDSMPKVE---ETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       132 ~~~g~i---~~~~l~~~~~~~-~g~~i~GiIlN~~~~~~~~---~~le~~~~ipvLG~iP~~~~~  189 (217)
                      +.--++   |..+.++..+++ .+.++.|+|+|....+...   +.+.+..+.++++.||+...+
T Consensus       152 ~E~~AL~aannI~k~i~~~~~~~~~~l~Gii~N~r~~~~~~~~v~~fa~~~g~~vi~~IPr~~~V  216 (274)
T PRK13235        152 GEMMAMYAANNICKGILKYADAGGVRLGGLICNSRKVDNEREMIEELARKLGTQMIHFVPRDNMV  216 (274)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf             83689999999999999997437954889997367787578999999997499369975894588


No 29 
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=98.91  E-value=4.5e-08  Score=69.98  Aligned_cols=182  Identities=16%  Similarity=0.080  Sum_probs=102.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHH----------HH-C-CC--CCCCCC-C-CCC-
Q ss_conf             329998358987479999999999840486120138873806899999----------85-5-78--731144-3-001-
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHR----------IG-R-IP--KSHIIP-E-KWK-   65 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~----------~~-~-~~--~~~~~~-~-~~~-   65 (217)
                      |+|-|.|-+ |||||++|.-|..+|...+.|=.+-|+++-.|......          .. . ..  .+...+ . .+. 
T Consensus         2 ~~iaiyGKG-GVGKSTTt~NLaAALA~~GkkVL~IgcDPk~dsT~~l~gg~~~~tvld~l~~~~~~~~~l~~v~~~g~~g   80 (273)
T PRK13232          2 RQIAIYGKG-GIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFGD   80 (273)
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHEEECCCCC
T ss_conf             579997998-6658878999999999779969998978844277788589988879999986185656366615428897


Q ss_pred             --CCCCHHHHHHHHHHHCCCH------HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf             --4510347889998502350------78864223288799922765556676753089999974794489705776504
Q gi|254780487|r   66 --LRTPASPHLAAEIDGVIID------PATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTI  137 (217)
Q Consensus        66 --~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i  137 (217)
                        ....-.|.......+..+.      ..+.....++|+++++-.|++-.+...--    +...+--.|++|+.+..-++
T Consensus        81 v~cve~ggp~~g~gcagrgii~~~~lle~l~~~~~~~Dyvl~Dvlgdvvcggfa~P----~~~~~A~evlIVts~E~~sl  156 (273)
T PRK13232         81 IKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMP----IREGKAKEIYIVASGELMAI  156 (273)
T ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCC----CCCCCCCEEEEEECCCHHHH
T ss_conf             38986899876765453047888889997083214798899941473323653144----20165768999807608889


Q ss_pred             ---HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH---HHHHCCCCEEEEECCCCCC
Q ss_conf             ---579999999984799079999769778005999---9986199899994788888
Q gi|254780487|r  138 ---NHSLLSLETLRNRNINIIGIAFIGDSMPKVEET---IVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       138 ---~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~~~~---le~~~~ipvLG~iP~~~~~  189 (217)
                         |+..-.+..+.+.+.++.|+|.|+...+...+.   +.+..+.++++.||+...+
T Consensus       157 yaannI~k~i~~~~~~~~rl~GiI~n~r~~~~~~e~v~~fa~~~g~~vi~~IPr~~~v  214 (273)
T PRK13232        157 YAANNICKGLAKFAKGGARLGGIICNSRNVDGERELLEAFAKKLGSQLIHFVPRDNIV  214 (273)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf             9999999999999621885014885055776389999999997199669978997788


No 30 
>PRK11670 putative ATPase; Provisional
Probab=98.91  E-value=1.8e-08  Score=72.43  Aligned_cols=174  Identities=14%  Similarity=0.020  Sum_probs=96.8

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH--HHHHHHCCCC------CCCCCCCC---------
Q ss_conf             832999835898747999999999984048612013887380689--9999855787------31144300---------
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK--TIHRIGRIPK------SHIIPEKW---------   64 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~--~~~~~~~~~~------~~~~~~~~---------   64 (217)
                      ++-|.|+.-.-|||||++|.-|+-+|...|+|-.--    |.|..  .+...++...      ....+.|.         
T Consensus       107 ~~vIAVaSGKGGVGKSTvavNLA~ALA~~G~kVgll----DADi~Gpsip~mlG~~~~~~~~~d~~~i~P~~~~gi~~~S  182 (369)
T PRK11670        107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL----DADIYGPSIPTMLGAENQRPTSPDGTHMAPIMAHGLATNS  182 (369)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE----ECCCCCCCCCHHHCCCCCCCCCCCCCEECCCCCCCEEEEE
T ss_conf             889999858998889999999999999669937898----2478887650230665456646889663760005812530


Q ss_pred             --CCCCCHHHHHHHHHHHCCCHHH-----HHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCCH
Q ss_conf             --1451034788999850235078-----8642232887999227655566767530899999747-9448970577650
Q gi|254780487|r   65 --KLRTPASPHLAAEIDGVIIDPA-----TINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-FPIILCARTSLGT  136 (217)
Q Consensus        65 --~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~-~~vILV~~~~~g~  136 (217)
                        .+..+..+   .-+.+-....+     ....-.+.|++||.-.-|..+   ..++   ++..+. ..+|+|+....-+
T Consensus       183 ~g~l~~~~~~---~iwRgp~~~~al~q~l~~~~wg~lDyLIID~PPGtgD---i~Lt---l~q~v~~~gavvVTTPq~~A  253 (369)
T PRK11670        183 IGYLVTDDNA---MVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGD---IQLT---LAQNIPVTGAVVVTTPQDIA  253 (369)
T ss_pred             CCCCCCCCCC---HHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH---HHHH---HHHHCCCCEEEEECCCCHHH
T ss_conf             2202376640---2221301679999987774337888899837998752---7778---87645766079962773769


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCC-------CC------CHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             457999999998479907999976977-------80------05999998619989999478888
Q gi|254780487|r  137 INHSLLSLETLRNRNINIIGIAFIGDS-------MP------KVEETIVKIGRIPHLGRLPKIDP  188 (217)
Q Consensus       137 i~~~~l~~~~~~~~g~~i~GiIlN~~~-------~~------~~~~~le~~~~ipvLG~iP~~~~  188 (217)
                      +.++.-.+.++++.++++.|+|-|...       ..      ...+.+.+..++|+||.||..+.
T Consensus       254 l~Da~k~i~m~~k~~vpilGiVeNMs~~~c~~c~~~~~iFg~gg~e~~a~~~~v~lLG~IP~d~~  318 (369)
T PRK11670        254 LIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHIS  318 (369)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCEEEECCCCHH
T ss_conf             99999999999854888506886363333689997100136660999999839987997989889


No 31 
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=98.90  E-value=1.3e-07  Score=67.16  Aligned_cols=157  Identities=17%  Similarity=0.102  Sum_probs=91.4

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC----------CEECCC-CCCCHHHHHHHHHCCCC------CCCCCCCC
Q ss_conf             83299983589874799999999998404861----------201388-73806899999855787------31144300
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWK----------PIQSGM-YEETDSKTIHRIGRIPK------SHIIPEKW   64 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K----------Pv~~G~-~~~~D~~~~~~~~~~~~------~~~~~~~~   64 (217)
                      .|.|+||++.+|-|||++++.|++.+-..|-|          |-.... .......+..-+.+...      +....+..
T Consensus       531 ~kvi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~~~ld  610 (726)
T PRK09841        531 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFD  610 (726)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCHHHHCCCCCCCCEE
T ss_conf             86899977999997799999999999847995999828877710776159999987799838999889933027989989


Q ss_pred             CC-CCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Q ss_conf             14-51034788999850235078864223288799922765556676753089999974794489705776504579999
Q gi|254780487|r   65 KL-RTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLS  143 (217)
Q Consensus        65 ~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~  143 (217)
                      .. ..+..|+-..-+...........+.+.||+|||+.+-      ....+.+-+...+==-+++|++.+........-+
T Consensus       611 vl~aG~~p~nP~elL~s~~~~~ll~~l~~~yD~IIiDtPP------vl~v~Da~~l~~~~D~~l~Vvr~g~T~~~~~~~a  684 (726)
T PRK09841        611 VITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPP------MLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLS  684 (726)
T ss_pred             EEECCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCC------CCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHH
T ss_conf             9828999979899958769999999998139999991999------6534159999997895999997996889999999


Q ss_pred             HHHHHHCCCEEEEEEECCCCC
Q ss_conf             999984799079999769778
Q gi|254780487|r  144 LETLRNRNINIIGIAFIGDSM  164 (217)
Q Consensus       144 ~~~~~~~g~~i~GiIlN~~~~  164 (217)
                      ++.+++.|.++.|+|+|+...
T Consensus       685 ~~~l~~~~~~v~G~vlN~v~~  705 (726)
T PRK09841        685 MQRLEQAGVNIKGAILNGVIK  705 (726)
T ss_pred             HHHHHHCCCCEEEEEECCCCC
T ss_conf             999997899758999828865


No 32 
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=98.87  E-value=2.8e-07  Score=65.05  Aligned_cols=175  Identities=11%  Similarity=0.059  Sum_probs=103.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC---------------CC
Q ss_conf             329998358987479999999999840486120138873806899999855787311443001---------------45
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWK---------------LR   67 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~---------------~~   67 (217)
                      |+|-|.|-+ |+|||++|.-|..+|-..|.|-.+.||.+-.|......-.....+..+.....               |.
T Consensus         5 r~IAiYGKG-GIGKSTtssNlsAAlA~~G~rVl~IGCDPK~DSTr~Llgg~~~~Tvld~~~~~~~~ed~~ledvv~~G~~   83 (293)
T PRK13234          5 RQIAFYGKG-GIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGYK   83 (293)
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCC
T ss_conf             579997798-4458778999999999779969997489831656876289999708899876498121538789743779


Q ss_pred             CC-----HHHHHHHHHHHCCCHHHHHHH-----HHHCCEEEEECCCC-----CCCCCCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf             10-----347889998502350788642-----23288799922765-----5566767530899999747944897057
Q gi|254780487|r   68 TP-----ASPHLAAEIDGVIIDPATINP-----PDINDSIIIEGIGG-----LLVPLTTEYLFIDLIERWQFPIILCART  132 (217)
Q Consensus        68 ~~-----~~~~~~~~~~~~~i~~~~~~~-----~~~~D~viIEGagg-----~~~~~~~~~~~~dla~~l~~~vILV~~~  132 (217)
                      ..     =-|.-.....+.-+..++..+     .++.|+++-.-.|.     ...|+..  ..++       .|++|++.
T Consensus        84 gI~CVEsGGPePGvGCAGRGIitai~~Le~lga~ed~D~V~yDVLGDVVCGGFAmPir~--g~A~-------evyIVtSg  154 (293)
T PRK13234         84 GIKCVESGGPEPGVGCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRE--NKAQ-------EIYIVMSG  154 (293)
T ss_pred             CEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCC--CCCC-------EEEEEECC
T ss_conf             84897689989988877713146788887718765799999956776651475566545--8876-------89999467


Q ss_pred             CCCHHHH---HHHHHHHHH-HCCCEEEEEEECCCCCCCHHHHHHH---HCCCCEEEEECCCC
Q ss_conf             7650457---999999998-4799079999769778005999998---61998999947888
Q gi|254780487|r  133 SLGTINH---SLLSLETLR-NRNINIIGIAFIGDSMPKVEETIVK---IGRIPHLGRLPKID  187 (217)
Q Consensus       133 ~~g~i~~---~~l~~~~~~-~~g~~i~GiIlN~~~~~~~~~~le~---~~~ipvLG~iP~~~  187 (217)
                      ...++..   ...++..+. +.+.++.|+|.|+-+.+...+.+++   .++.|+++.||+..
T Consensus       155 e~mslyAANnI~~~i~~~~~~g~~rlgGlI~N~r~~~~e~~~v~~fa~~~gt~ii~~IPrs~  216 (293)
T PRK13234        155 EMMALYAANNIAKGILKYANSGGVRLGGLICNERQTDRELELAEALAKRLGSKLIHFVPRDN  216 (293)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCH
T ss_conf             18799999999999999863269624689971789853799999999984993799779968


No 33 
>PRK11519 tyrosine kinase; Provisional
Probab=98.83  E-value=2.7e-07  Score=65.07  Aligned_cols=153  Identities=14%  Similarity=0.105  Sum_probs=91.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC----------CEEC---CCCCCCHHHHHHHHHCCCC------CCCCCCC
Q ss_conf             3299983589874799999999998404861----------2013---8873806899999855787------3114430
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK----------PIQS---GMYEETDSKTIHRIGRIPK------SHIIPEK   63 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K----------Pv~~---G~~~~~D~~~~~~~~~~~~------~~~~~~~   63 (217)
                      |.|+||++.+|-|||++++.|++.+-..|-|          |-.+   |...  ...+...+.+...      +....+.
T Consensus       527 ~vi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~--~~GLs~~L~g~~~~~~~i~~~~~~~l  604 (720)
T PRK11519        527 NVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNN--VNGLSEILIGQGDITTAAKPTSIANF  604 (720)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCC--CCCHHHHCCCCCCHHHHCCCCCCCCE
T ss_conf             6799970899997899999999999837991999938777701677539999--99859980799978997035798998


Q ss_pred             CCC-CCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf             014-5103478899985023507886422328879992276555667675308999997479448970577650457999
Q gi|254780487|r   64 WKL-RTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLL  142 (217)
Q Consensus        64 ~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l  142 (217)
                      ... ..+..|+-...+........+..+.+.||+|||+.+-      ....+.+-+...+==-+++|++.+........-
T Consensus       605 ~vl~~G~~~pnp~elL~s~~~~~ll~~l~~~yD~IIiDtpP------v~~v~Da~~la~~aD~~l~Vvr~g~t~~~~v~~  678 (720)
T PRK11519        605 DLIPRGQVPPNPSELLMSERFAELVAWASKNYDLVLIDTPP------ILAVTDAAIVGRHVGTTLMVARYAVNTLKEVET  678 (720)
T ss_pred             EEECCCCCCCCHHHHHCCHHHHHHHHHHHHHCCEEEEECCC------CCCCHHHHHHHHHCCEEEEEEECCCCCHHHHHH
T ss_conf             99769999949899838759999999998529999993999------652358999999789799999899578999999


Q ss_pred             HHHHHHHCCCEEEEEEECCCC
Q ss_conf             999998479907999976977
Q gi|254780487|r  143 SLETLRNRNINIIGIAFIGDS  163 (217)
Q Consensus       143 ~~~~~~~~g~~i~GiIlN~~~  163 (217)
                      +++.+++.|.++.|+|+|+..
T Consensus       679 a~~~l~~~~~~v~G~VlN~v~  699 (720)
T PRK11519        679 SLSRFEQNGIPVKGVILNSIF  699 (720)
T ss_pred             HHHHHHHCCCCEEEEEECCCC
T ss_conf             999999689974899988976


No 34 
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=98.81  E-value=8.9e-08  Score=68.13  Aligned_cols=175  Identities=17%  Similarity=0.217  Sum_probs=102.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC----CCHHHHH-----
Q ss_conf             2999835898747999999999984048612013887380689999985578731144300145----1034788-----
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLR----TPASPHL-----   74 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----   74 (217)
                      +|-|.|-+ |+|||++|+-|..+|...|.|-.+.|+.+..|.....  .+...+ ..+..+.-+    ....+..     
T Consensus         2 ~iaiyGKG-GIGKSTtsaNlsaaLA~~GkkVl~IGcDpk~DsT~~L--~g~~~~-tvld~l~~~~~~~~~~~~edvi~~G   77 (271)
T CHL00072          2 KIAVYGKG-GIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTL--TGFLIP-TIIDTLQSKDYHYEDVWPEDVIYKG   77 (271)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH--CCCCCC-CHHHHHHHHCCCCCCCCHHHHHHCC
T ss_conf             69997898-5448588999999999879979997899737777400--699888-5999997537873216499998527


Q ss_pred             --------------HHHHHHCCCHHHHH---H--HHHHCCEEEEECCCCCCCC-CCCCCCHHHHHHHHCCCEEEEECCCC
Q ss_conf             --------------99985023507886---4--2232887999227655566-76753089999974794489705776
Q gi|254780487|r   75 --------------AAEIDGVIIDPATI---N--PPDINDSIIIEGIGGLLVP-LTTEYLFIDLIERWQFPIILCARTSL  134 (217)
Q Consensus        75 --------------~~~~~~~~i~~~~~---~--~~~~~D~viIEGagg~~~~-~~~~~~~~dla~~l~~~vILV~~~~~  134 (217)
                                    .....+..+..++.   +  ..+++|+++..-.|++..+ .......+|       .+++|++...
T Consensus        78 ~~gi~cvEaGGPepGvGCaGrgi~~~i~lL~~l~~~~d~D~V~yDvlgDVVCGGFa~Pi~~Ad-------~~~iVts~e~  150 (271)
T CHL00072         78 YGGVDCVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDVILFDVLGDVVCGGFAAPLNYAD-------YCIIITDNGF  150 (271)
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC-------EEEEEECCCH
T ss_conf             788466543899988777886519999999973762138889994477655654567500088-------8999956708


Q ss_pred             CHHHHH---HHHHHHH-HHCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             504579---9999999-847990799997697780059999986199899994788888
Q gi|254780487|r  135 GTINHS---LLSLETL-RNRNINIIGIAFIGDSMPKVEETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       135 g~i~~~---~l~~~~~-~~~g~~i~GiIlN~~~~~~~~~~le~~~~ipvLG~iP~~~~~  189 (217)
                      .++.++   .-.++.. +..+.++.|+|.|+....+..+.+.+.++.+++|.||+.+..
T Consensus       151 malyaANnI~~~i~~~a~~~~~rl~GiI~N~~~~~~~v~~fa~~~g~~~i~~iPrd~~V  209 (271)
T CHL00072        151 DALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLIDKYVEACPMPVLEVLPLIEDI  209 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf             89999999999999973046864443652268837899999997399669856871166


No 35 
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.78  E-value=2.1e-06  Score=59.55  Aligned_cols=177  Identities=18%  Similarity=0.197  Sum_probs=98.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             2999835898747999999999984048612013887380689--99998557873114430014510347889998502
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK--TIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
                      .|+.+|- .|+|||+.+.-|++.|+..++||.-..+..+-.+.  -++.+...    ..+..|......+|-..++    
T Consensus       102 vImmvGL-QGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q----~~v~~f~~~~~~~Pv~Iak----  172 (451)
T COG0541         102 VILMVGL-QGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ----VGVPFFGSGTEKDPVEIAK----  172 (451)
T ss_pred             EEEEEEC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH----CCCCEECCCCCCCHHHHHH----
T ss_conf             8999815-679748689999999997499458985056786899999999986----0985316778899799999----


Q ss_pred             CCHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             350788642-232887999227655566767530899999747-944897057765045799999999847990799997
Q gi|254780487|r   82 IIDPATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAF  159 (217)
Q Consensus        82 ~i~~~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIl  159 (217)
                         .+...+ ...+|++||..||=+...-..-.-..++...++ ..+++|+++-.|  .++.-+.+.+.. .+.|-|+|+
T Consensus       173 ---~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G--QdA~~~A~aF~e-~l~itGvIl  246 (451)
T COG0541         173 ---AALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG--QDAVNTAKAFNE-ALGITGVIL  246 (451)
T ss_pred             ---HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC--HHHHHHHHHHHH-HCCCCEEEE
T ss_conf             ---99999997499889996887330309999999999855398748998764445--678999999866-269864999


Q ss_pred             CC-CCCCC--HHHHHHHHCCCCE--EEEECCCCC---CCHHHHH
Q ss_conf             69-77800--5999998619989--999478888---8887999
Q gi|254780487|r  160 IG-DSMPK--VEETIVKIGRIPH--LGRLPKIDP---IDPDVLH  195 (217)
Q Consensus       160 N~-~~~~~--~~~~le~~~~ipv--LG~iP~~~~---~~~~~l~  195 (217)
                      .. +...+  .+-.+...||.|+  +|+=-++++   ..|++.+
T Consensus       247 TKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~a  290 (451)
T COG0541         247 TKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFA  290 (451)
T ss_pred             ECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf             71467876228885699878985997458873547774958899


No 36 
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=98.77  E-value=2.6e-07  Score=65.27  Aligned_cols=152  Identities=12%  Similarity=0.091  Sum_probs=91.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC----------CEECCCC-CCCHHHHHHHHHCCCCCCCC-------CCCC
Q ss_conf             3299983589874799999999998404861----------2013887-38068999998557873114-------4300
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK----------PIQSGMY-EETDSKTIHRIGRIPKSHII-------PEKW   64 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K----------Pv~~G~~-~~~D~~~~~~~~~~~~~~~~-------~~~~   64 (217)
                      |.+-|+++.+|-|||++++-|+-++...|-|          |-+.... .+.+..+..-+.+ ..+...       .+..
T Consensus       104 ~~LaItS~~pGEGKS~vAaNLA~~~Aq~G~RvLLVDaDLRrP~lh~~f~l~~~~GLs~vL~g-~~~l~~i~~~~~~~nL~  182 (274)
T TIGR03029       104 KALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAG-RSDLEVITHIPALENLS  182 (274)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCCCCHHHHHCC-CCCHHHEEECCCCCCEE
T ss_conf             38999689999989999999999999679919999588888447797599997687888459-99889905158989978


Q ss_pred             CCCCCHHHHHHHH-HHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Q ss_conf             1451034788999-850235078864223288799922765556676753089999974794489705776504579999
Q gi|254780487|r   65 KLRTPASPHLAAE-IDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLS  143 (217)
Q Consensus        65 ~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~  143 (217)
                      .......|...++ +...........+.+.||++||+.+-      ....+.+.+....=--+++|++.+.....+..-+
T Consensus       183 VLpaG~~ppnP~eLL~s~~~~~ll~~l~~~yD~IIiDTPP------vl~~sDA~ila~~aDg~LlVvR~~~T~~~~l~~a  256 (274)
T TIGR03029       183 VLPAGAIPPNPQELLARPAFTDLLNKVMGDYDVVIVDTPS------AEHSSDAQIVATRARGTLIVSRVNETRLHELTSL  256 (274)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCC------CCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHH
T ss_conf             9969999989799873589999999998409999993898------6554349999986897999996898889999999


Q ss_pred             HHHHHHCCCEEEEEEECC
Q ss_conf             999984799079999769
Q gi|254780487|r  144 LETLRNRNINIIGIAFIG  161 (217)
Q Consensus       144 ~~~~~~~g~~i~GiIlN~  161 (217)
                      ++.+++.|.++.|+|+|+
T Consensus       257 ~~~L~~~g~~VlGvVLNq  274 (274)
T TIGR03029       257 KEHLSGVGVRVVGAVLNQ  274 (274)
T ss_pred             HHHHHHCCCCEEEEEECC
T ss_conf             999997799668998487


No 37 
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=98.77  E-value=2.1e-07  Score=65.75  Aligned_cols=180  Identities=16%  Similarity=0.113  Sum_probs=109.2

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHH-HHHHHCCCCCCEE------CCC-----CCCCHHHHHHHHHCCCCCCCCCCCC----
Q ss_conf             98329998358987479999999-9998404861201------388-----7380689999985578731144300----
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASAL-VHALNAYYWKPIQ------SGM-----YEETDSKTIHRIGRIPKSHIIPEKW----   64 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L-~~~l~~~~~KPv~------~G~-----~~~~D~~~~~~~~~~~~~~~~~~~~----   64 (217)
                      |++.|=|++-.-|+|||++|+.| ...++.++.+=+.      .|.     ...+....+.+......+..++-..    
T Consensus         1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~   80 (262)
T COG0455           1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQD   80 (262)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHCCCCHHHEEEECCCC
T ss_conf             97899998458875689899869999996489769999658888728888588888550999970778776802315768


Q ss_pred             ---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf             ---14510347889998502350788642232887999227655566767530899999747944897057765045799
Q gi|254780487|r   65 ---KLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSL  141 (217)
Q Consensus        65 ---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~  141 (217)
                         ......+.................++...+|++++....|+..+.......+|       .+|+|+.....++..++
T Consensus        81 gl~vipg~~~~~~~~~~~~~~~~~~~~~l~~~~D~iliD~~aGl~~~~~~~~~~sd-------~~viVt~pe~~si~~A~  153 (262)
T COG0455          81 GLYVLPGGSGLEDLAKLDPEDLEDVIKELEELYDYILIDTGAGLSRDTLSFILSSD-------ELVIVTTPEPTSITDAY  153 (262)
T ss_pred             CEEEEECCCCHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCC-------CEEEEECCCCCHHHHHH
T ss_conf             98996078876888616988899999998752999999689996688899987368-------17999279852089999


Q ss_pred             HHHHHHHHCCCEEEE--EEECCCCCC-CH----HHHHHHHCCCCEEEEECCCC
Q ss_conf             999999847990799--997697780-05----99999861998999947888
Q gi|254780487|r  142 LSLETLRNRNINIIG--IAFIGDSMP-KV----EETIVKIGRIPHLGRLPKID  187 (217)
Q Consensus       142 l~~~~~~~~g~~i~G--iIlN~~~~~-~~----~~~le~~~~ipvLG~iP~~~  187 (217)
                      .+++.++..+.+..+  +|+|+.... +.    .+..+...++|.+..+|+.+
T Consensus       154 ~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~  206 (262)
T COG0455         154 KTIKILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVKQVPVLQVIPFDP  206 (262)
T ss_pred             HHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCH
T ss_conf             99999997387643315899703666654678999999997077434715675


No 38 
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.77  E-value=1.4e-06  Score=60.59  Aligned_cols=176  Identities=16%  Similarity=0.117  Sum_probs=96.4

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHH--HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             299983589874799999999998404861201388738068--999998557873114430014510347889998502
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDS--KTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
                      .|+++|-. |+|||+.++-|++.++..++||.-..+...-.+  .-++.+...    ..+..+.-.....|...+.    
T Consensus        99 Vim~vGlq-GsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~----~~v~~~~~~~~~dp~~i~~----  169 (433)
T PRK00771         99 TILLVGLQ-GSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEK----INVPFYGDPKEKDAVKIVK----  169 (433)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH----CCCCCCCCCCCCCHHHHHH----
T ss_conf             89997378-89789999999999997799467850678836899999999986----3887317889999999999----


Q ss_pred             CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             350788642232887999227655566767530899999747-9448970577650457999999998479907999976
Q gi|254780487|r   82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFI  160 (217)
Q Consensus        82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN  160 (217)
                         .+... .+.+|++||..||-+......-.-..++.+..+ -.++||.++-.|  .+++-..+.+.+ .+++-|+|+.
T Consensus       170 ---~a~~~-~k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q~a~~~a~~F~~-~~~i~gvIlT  242 (433)
T PRK00771        170 ---EGLEK-LKKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIG--QQASEQAKAFKE-AVGIGGIIIT  242 (433)
T ss_pred             ---HHHHH-HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHHHH-HCCCCEEEEE
T ss_conf             ---99998-4569889997765210409999999999877579768998654422--678999999987-5388737997


Q ss_pred             C-CCCCCH--HHHHHHHCCCCEE--EEECCCCC---CCHHHHH
Q ss_conf             9-778005--9999986199899--99478888---8887999
Q gi|254780487|r  161 G-DSMPKV--EETIVKIGRIPHL--GRLPKIDP---IDPDVLH  195 (217)
Q Consensus       161 ~-~~~~~~--~~~le~~~~ipvL--G~iP~~~~---~~~~~l~  195 (217)
                      + +.....  .-.+...+|.|+.  |+=-.+++   .+|++.+
T Consensus       243 KlDgdarGGaaLSi~~~t~~PI~FiG~GEk~~dle~F~p~r~a  285 (433)
T PRK00771        243 KLDGTAKGGGALSAVAETGAPIKFIGTGETIDDLEPFDPKRFI  285 (433)
T ss_pred             CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf             2567887305421898878995688617872148866808899


No 39 
>PRK13236 nitrogenase reductase; Reviewed
Probab=98.76  E-value=6.4e-07  Score=62.78  Aligned_cols=176  Identities=11%  Similarity=0.076  Sum_probs=102.8

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCHH----------
Q ss_conf             32999835898747999999999984048612013887380689999985578731144300145-1034----------
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLR-TPAS----------   71 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------   71 (217)
                      |+|-|-|-+ |+|||+++.-|..+|-..|.|-.|-||.+-.|......-.....+.......... ....          
T Consensus         7 k~IAiYGKG-GIGKSTts~NlsAAlA~~G~rVl~IGCDPK~DSTr~Llgg~~~~tvld~~~e~~~~ed~~ledvv~~G~~   85 (295)
T PRK13236          7 RQIAFYGKG-GIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELEEVMLTGFR   85 (295)
T ss_pred             EEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCC
T ss_conf             189996798-4347578999999999779969997889802667876389999718888876098444548887422658


Q ss_pred             ---------HHHHHHHHHCCCHHHHHH-----HHHHCCEEEEECCCC-----CCCCCCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf             ---------788999850235078864-----223288799922765-----5566767530899999747944897057
Q gi|254780487|r   72 ---------PHLAAEIDGVIIDPATIN-----PPDINDSIIIEGIGG-----LLVPLTTEYLFIDLIERWQFPIILCART  132 (217)
Q Consensus        72 ---------~~~~~~~~~~~i~~~~~~-----~~~~~D~viIEGagg-----~~~~~~~~~~~~dla~~l~~~vILV~~~  132 (217)
                               |.-.....+.-+..++..     +-++.|+++-+-.|.     ...|+-.+  .++       .+++|++.
T Consensus        86 Gi~CvEsGGPePGvGCAGRGIitai~lLee~ga~e~~D~V~yDVLGDVVCGGFAmPir~g--~A~-------evyiVtSg  156 (295)
T PRK13236         86 GVRCVESGGPEPGVGCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREG--KAQ-------EIYIVTSG  156 (295)
T ss_pred             CCEEEECCCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCC--CCC-------EEEEEECC
T ss_conf             837987899999898888625405667987198556998988505775326754656678--764-------89999568


Q ss_pred             CCCHHHH---HHHHHHHHH-HCCCEEEEEEECCCCCCCHHHHHHH---HCCCCEEEEECCCCC
Q ss_conf             7650457---999999998-4799079999769778005999998---619989999478888
Q gi|254780487|r  133 SLGTINH---SLLSLETLR-NRNINIIGIAFIGDSMPKVEETIVK---IGRIPHLGRLPKIDP  188 (217)
Q Consensus       133 ~~g~i~~---~~l~~~~~~-~~g~~i~GiIlN~~~~~~~~~~le~---~~~ipvLG~iP~~~~  188 (217)
                      ...++..   ...++..+. +.+.++.|+|.|+-+.+...+.+++   .+|.|+++.||+...
T Consensus       157 e~malyAANNI~~~i~~~a~~g~~rlgGiI~N~r~~~~e~~~v~~fa~~~gt~ii~~iPr~~~  219 (295)
T PRK13236        157 EMMAMYAANNIARGILKYAHTGGVRLGGLICNSRNVDREIELIETLAKRLNTQMIHFVPRDNI  219 (295)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHH
T ss_conf             188999999999999999742697035899607888747999999999819926996578388


No 40 
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.76  E-value=2.8e-07  Score=65.06  Aligned_cols=174  Identities=15%  Similarity=0.117  Sum_probs=99.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC----------CEEC---CC------CCCCHHHHHHHHHCCC-CCCCCCC
Q ss_conf             3299983589874799999999998404861----------2013---88------7380689999985578-7311443
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK----------PIQS---GM------YEETDSKTIHRIGRIP-KSHIIPE   62 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K----------Pv~~---G~------~~~~D~~~~~~~~~~~-~~~~~~~   62 (217)
                      +.|.|+....|+|||+++..|+.++...|.|          |-..   |.      ....+...+....... .....+.
T Consensus        58 ~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi~  137 (265)
T COG0489          58 NVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSIL  137 (265)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEE
T ss_conf             18999758998756899999999999639938999674669863554089865565411378711432202665504788


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH-CCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf             0014510347889998502350788642232-887999227655566767530899999747944897057765045799
Q gi|254780487|r   63 KWKLRTPASPHLAAEIDGVIIDPATINPPDI-NDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSL  141 (217)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~  141 (217)
                      +... .+..+.  ..+....+.......... +|++||+..-+..      ...+.++..+.--+|+|++.+......+.
T Consensus       138 ~~~~-~p~~~r--~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g------~~d~~i~~~~~~g~viVt~p~~~~~~~v~  208 (265)
T COG0489         138 PLGP-VPVIPR--GLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTG------DADATVLQRIPDGVVIVTTPGKTALEDVK  208 (265)
T ss_pred             ECCC-CCCCCH--HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC------HHHHHHHHHCCCEEEEEECCCCCHHHHHH
T ss_conf             3288-998946--77633899999999745688889996999864------27778875138859999667735599999


Q ss_pred             HHHHHHHHCCCEEEEEEECC----CCCC---CHHHHHHHHCCCCEEEEECCCC
Q ss_conf             99999984799079999769----7780---0599999861998999947888
Q gi|254780487|r  142 LSLETLRNRNINIIGIAFIG----DSMP---KVEETIVKIGRIPHLGRLPKID  187 (217)
Q Consensus       142 l~~~~~~~~g~~i~GiIlN~----~~~~---~~~~~le~~~~ipvLG~iP~~~  187 (217)
                      -+++.+++.+.++.|+|.|.    +...   ..+..-+++.  |.||.+|...
T Consensus       209 ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~~g~~~~~~~~~~--~~~g~~p~~~  259 (265)
T COG0489         209 KAIDMLEKAGIPVLGVVENMSYFICPRCGEGGGEKYAERYG--PYLGSIPLDP  259 (265)
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHC--CCCCCCCCCH
T ss_conf             99999987499347999668666665557885233566511--1026688674


No 41 
>PRK10818 cell division inhibitor MinD; Provisional
Probab=98.75  E-value=1.1e-07  Score=67.53  Aligned_cols=181  Identities=15%  Similarity=0.106  Sum_probs=93.4

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE-------------CCCCCCCHHHHHHHHHCCCCCCCC--C----
Q ss_conf             983299983589874799999999998404861201-------------388738068999998557873114--4----
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ-------------SGMYEETDSKTIHRIGRIPKSHII--P----   61 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~-------------~G~~~~~D~~~~~~~~~~~~~~~~--~----   61 (217)
                      |++-|-|+.-.-|||||+++.-|+.+|...|.|=..             -|...... ..+.+......+...  +    
T Consensus         1 M~rvIaV~s~KGGVGKTT~avNLA~aLA~~G~kVlliD~D~~~~n~~~~lg~~~~~~-~~~~~vl~g~~~l~~~~i~~~~   79 (270)
T PRK10818          1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVV-YDFVNVIQGDATLNQALIKDKR   79 (270)
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC-CCHHHHHCCCCCHHHHEEECCC
T ss_conf             974999978999841899999999999977996899968999988873457677666-6689883699858890544687


Q ss_pred             CCCCCCCCHHHHH-HHHHHHCCCHHHHHHHHH-HCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf             3001451034788-999850235078864223-28879992276555667675308999997479448970577650457
Q gi|254780487|r   62 EKWKLRTPASPHL-AAEIDGVIIDPATINPPD-INDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINH  139 (217)
Q Consensus        62 ~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~  139 (217)
                      ....+.-|.+... ........+...+..+.+ ++|++||....|+..........+|       .+|+|+.+..-++..
T Consensus        80 ~~~l~ilpa~~~~~~~~~~~~~~~~~l~~l~~~~yDyIiID~ppgl~~~~~~al~aad-------~vlvv~tpe~~al~d  152 (270)
T PRK10818         80 TENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFAD-------EAIITTNPEVSSVRD  152 (270)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCC-------EEEEECCCCHHHHHH
T ss_conf             6997997999647675545999999999777659989998899986689999998589-------689973897889987


Q ss_pred             HHHHHHHHHH------CCC-EE-EEEEECCCCCCC-------HHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             9999999984------799-07-999976977800-------59999986199899994788888
Q gi|254780487|r  140 SLLSLETLRN------RNI-NI-IGIAFIGDSMPK-------VEETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       140 ~~l~~~~~~~------~g~-~i-~GiIlN~~~~~~-------~~~~le~~~~ipvLG~iP~~~~~  189 (217)
                      +.-.+..+..      ++. ++ .++++|+.....       ..+.+++..++|++|+||+...+
T Consensus       153 a~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~IP~d~~v  217 (270)
T PRK10818        153 SDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSV  217 (270)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHCCEEEEEECHHHCCHHHHCCHHHHHHHCCCEEEEECCCCHHH
T ss_conf             99999999987776533520100125884245312321100129999973288069980797469


No 42 
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780    The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane.    This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=98.74  E-value=1.2e-06  Score=61.09  Aligned_cols=195  Identities=19%  Similarity=0.188  Sum_probs=115.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHH--HHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC-CCCCHH---HHHHHH
Q ss_conf             29998358987479999999999--840486120138873806899999855787311443001-451034---788999
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHA--LNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWK-LRTPAS---PHLAAE   77 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~--l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~   77 (217)
                      -|+.+|= .|+||||+|.-|+..  ++..+-||.-.+|+.+-.+-..|-.. +. ....+..|. .....+   |---++
T Consensus       104 vilmvGL-QGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~-Lg-~Q~gVpvf~h~~~~~~p~~Pv~ia~  180 (439)
T TIGR00959       104 VILMVGL-QGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKV-LG-EQVGVPVFAHLGKGQSPDDPVEIAR  180 (439)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHH-HH-HHCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             8997313-7885788999999999998638970340321034789999999-76-7528871100478889887789999


Q ss_pred             HHHCCCHHHHHH-HHHHCCEEEEECCCCCCCCCCCCCCHHH---HHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             850235078864-2232887999227655566767530899---999747-94489705776504579999999984799
Q gi|254780487|r   78 IDGVIIDPATIN-PPDINDSIIIEGIGGLLVPLTTEYLFID---LIERWQ-FPIILCARTSLGTINHSLLSLETLRNRNI  152 (217)
Q Consensus        78 ~~~~~i~~~~~~-~~~~~D~viIEGagg~~~~~~~~~~~~d---la~~l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~  152 (217)
                             .+... -...+|+|||..||=+..   .+.++.+   +-+.++ ..++||+|+=.|  -+++-+...| +..+
T Consensus       181 -------~Al~~Ak~~~~D~vI~DTAGRL~I---D~~LM~EL~~iK~~~nP~EiLlVvDaM~G--QdAvn~A~~F-~e~l  247 (439)
T TIGR00959       181 -------QALEEAKENGFDVVIVDTAGRLQI---DEELMEELAEIKEILNPDEILLVVDAMTG--QDAVNTAKTF-NERL  247 (439)
T ss_pred             -------HHHHHHHHCCCCEEEEECCCCHHH---HHHHHHHHHHHHHHHCCCEEEECCHHCCH--HHHHHHHHHH-CCCC
T ss_conf             -------999999974897899726751255---59999999999888688705412201021--6999999863-6600


Q ss_pred             EEEEEEECC-CCCCCHHH--HHHHHCCCCEE--EEECC---CCCCCHHHHH-------------HHHHHHHHHHHHHHHH
Q ss_conf             079999769-77800599--99986199899--99478---8888887999-------------9999713399999999
Q gi|254780487|r  153 NIIGIAFIG-DSMPKVEE--TIVKIGRIPHL--GRLPK---IDPIDPDVLH-------------QKFQEHFTQSLLQKYF  211 (217)
Q Consensus       153 ~i~GiIlN~-~~~~~~~~--~le~~~~ipvL--G~iP~---~~~~~~~~l~-------------~~~~~~~~~~~l~~~~  211 (217)
                      .|-|+|+.+ |..-+.-.  -+++.+|.|+.  |+=-.   ++...||+++             |-.++.+|+...++-+
T Consensus       248 gltG~vltK~DGDaRGGAALS~~~~tg~PIKFiG~GEK~~dLe~FhP~R~A~RILGMGDv~SLvEKA~~~~D~~~a~~~~  327 (439)
T TIGR00959       248 GLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIEDLEPFHPDRMASRILGMGDVLSLVEKAQEVVDEEEAKKLA  327 (439)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf             13547885475660578999999996896188841777233124674789863236552236999999851889999999


Q ss_pred             HHH
Q ss_conf             985
Q gi|254780487|r  212 YES  214 (217)
Q Consensus       212 ~~~  214 (217)
                      ++.
T Consensus       328 ~K~  330 (439)
T TIGR00959       328 EKM  330 (439)
T ss_pred             HHH
T ss_conf             986


No 43 
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223   This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=98.72  E-value=1.2e-07  Score=67.42  Aligned_cols=179  Identities=18%  Similarity=0.149  Sum_probs=106.9

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC----CCCCCCHHH---------HHHHHHCCCCCC--CCCCCCCC
Q ss_conf             832999835898747999999999984048612013----887380689---------999985578731--14430014
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS----GMYEETDSK---------TIHRIGRIPKSH--IIPEKWKL   66 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~----G~~~~~D~~---------~~~~~~~~~~~~--~~~~~~~~   66 (217)
                      ++.|.||.=.-||||||+|+-|..||-..|.|=+--    | .++=|..         .+-+.....+..  +.+--=++
T Consensus         1 ~~viViTSGKGGVGKTTtTANlG~aLA~lG~kVvliD~DiG-LRNLD~~lGLEnRivYt~vDVveG~C~l~qALikDKr~   79 (272)
T TIGR01968         1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIG-LRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRL   79 (272)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC-CHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             95899981788977358989999999961982899954757-03457774231035453554324842110010012675


Q ss_pred             CCCHHHHHHHHH-HHC-----CCHHHHHHHHHH--CCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf             510347889998-502-----350788642232--887999227655566767530899999747944897057765045
Q gi|254780487|r   67 RTPASPHLAAEI-DGV-----IIDPATINPPDI--NDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTIN  138 (217)
Q Consensus        67 ~~~~~~~~~~~~-~~~-----~i~~~~~~~~~~--~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~  138 (217)
                      . ...---+++. +..     +.......+.++  +|++||...-|+-.|.-.--.-||       ..|.|+.....++-
T Consensus        80 ~-NL~LLpAsQ~rdK~~~~~E~~~~lv~~Lk~~~~FDYviIDcPAGIE~GF~nAv~~Ad-------~AiVVttPEvsavR  151 (272)
T TIGR01968        80 E-NLYLLPASQTRDKDAVTPEQMKKLVNELKEEEHFDYVIIDCPAGIESGFRNAVAPAD-------EAIVVTTPEVSAVR  151 (272)
T ss_pred             H-HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCC-------EEEEEECCCCCCHH
T ss_conf             2-356636530236134697789999999854379307997378774356899875268-------35898778745100


Q ss_pred             HHHHHHHHHHHCC-CEE------EEEEECCCCCCCHH-------HHHHHHCCCCEEEEECCCCCC
Q ss_conf             7999999998479-907------99997697780059-------999986199899994788888
Q gi|254780487|r  139 HSLLSLETLRNRN-INI------IGIAFIGDSMPKVE-------ETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       139 ~~~l~~~~~~~~g-~~i------~GiIlN~~~~~~~~-------~~le~~~~ipvLG~iP~~~~~  189 (217)
                      ++==-+..+...+ +.=      .-+|+|+..++...       +.+.+...||++|+||..+.+
T Consensus       152 DADRvIGlLea~~~i~~~GEE~~~~LivNR~rP~mV~~G~Mlsi~Dv~~~L~i~LiGviPeD~~i  216 (272)
T TIGR01968       152 DADRVIGLLEAKGNIEEKGEEVKIKLIVNRLRPEMVKKGDMLSIDDVLEILSIPLIGVIPEDEEI  216 (272)
T ss_pred             HHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCE
T ss_conf             25567524212455445776464347785156477416898278999986088616863299865


No 44 
>PRK10867 signal recognition particle protein; Provisional
Probab=98.72  E-value=4.9e-06  Score=57.24  Aligned_cols=196  Identities=13%  Similarity=0.162  Sum_probs=101.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE-ECCC--CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             29998358987479999999999840486120-1388--73806899999855787311443001451034788999850
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI-QSGM--YEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG   80 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv-~~G~--~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (217)
                      .|+++|-. |+|||+.++-|++.|+....|+| -..+  .+..=..-++.+....    .+..+.......|...+.   
T Consensus       102 VIm~vGLq-GsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~~----~v~~~~~~~~~dp~~ia~---  173 (453)
T PRK10867        102 VVLMAGLQ-GAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQV----GVDFFPSDVGQKPVDIVN---  173 (453)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC----CCCEECCCCCCCHHHHHH---
T ss_conf             99997468-8851858999999999738983798558877058999999999851----980436788998899999---


Q ss_pred             CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             2350788642232887999227655566767530899999747-944897057765045799999999847990799997
Q gi|254780487|r   81 VIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAF  159 (217)
Q Consensus        81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIl  159 (217)
                      ..+   .....+++|++||..||=+......-....++.+..+ -.++||.++-.|  ..++-..+.+.+ .+++-|+|+
T Consensus       174 ~a~---~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q~a~~~a~~F~~-~~~~~gvIl  247 (453)
T PRK10867        174 AAL---KEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG--QDAANTAKAFNE-ALPLTGVVL  247 (453)
T ss_pred             HHH---HHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCC--HHHHHHHHHHHH-HCCCCEEEE
T ss_conf             999---99997799999997876012108889999999876378713797432235--668999999998-559870787


Q ss_pred             CC-CCCCC--HHHHHHHHCCCCEE--EEECCCCC---CCHHHH-------------HHHHHHHHHHHHHHHHHHH
Q ss_conf             69-77800--59999986199899--99478888---888799-------------9999971339999999998
Q gi|254780487|r  160 IG-DSMPK--VEETIVKIGRIPHL--GRLPKIDP---IDPDVL-------------HQKFQEHFTQSLLQKYFYE  213 (217)
Q Consensus       160 N~-~~~~~--~~~~le~~~~ipvL--G~iP~~~~---~~~~~l-------------~~~~~~~~~~~~l~~~~~~  213 (217)
                      .+ +....  ..=.+...+|.|+.  |+=-++++   .+|++.             .+..++.+++...++..++
T Consensus       248 TKlDgdarGG~alS~~~~t~~PI~FiG~GEk~ddle~F~p~r~asRILGmGDi~~Lvek~~~~~d~~~~~~~~~k  322 (453)
T PRK10867        248 TKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASK  322 (453)
T ss_pred             ECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             504678761389899999786967886699824588768489999861898789999999987508899999999


No 45 
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971    Synonym: dark protochlorophyllide reductase    Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite.    The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=98.71  E-value=1.4e-07  Score=66.92  Aligned_cols=181  Identities=18%  Similarity=0.229  Sum_probs=108.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCC-HH----------
Q ss_conf             2999835898747999999999984048612013887380689999985578731144-30014510-34----------
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIP-EKWKLRTP-AS----------   71 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~-~~~~~~~~-~~----------   71 (217)
                      .|=|-|=+ |+||||+|+-|..|+.+.|-|=+|-||.+-.|..|-..- .+.++..++ ....|... ..          
T Consensus         2 ~lAvYGKG-GiGKSTTssNLSvA~A~~GkkVlQIGCDPKhDSTFTLtg-~L~PTvidvL~~~~yH~E~v~~eD~iy~GY~   79 (275)
T TIGR01281         2 ILAVYGKG-GIGKSTTSSNLSVALAKKGKKVLQIGCDPKHDSTFTLTG-KLIPTVIDVLDAVNYHYEDVEPEDVIYTGYG   79 (275)
T ss_pred             EEEEECCC-CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC-CCCCCEEEECCCCCCCEEECCCCCEEEECCC
T ss_conf             68886388-877004678999999846991898525788887745447-4167464422567630310333787783468


Q ss_pred             ---------HHHHHHHH----HCCCHHH-HHHHHHHCCEEEEECCCCCCCC-CCCCCCHHHHHHHHCCCEEEEECCCCCH
Q ss_conf             ---------78899985----0235078-8642232887999227655566-7675308999997479448970577650
Q gi|254780487|r   72 ---------PHLAAEID----GVIIDPA-TINPPDINDSIIIEGIGGLLVP-LTTEYLFIDLIERWQFPIILCARTSLGT  136 (217)
Q Consensus        72 ---------~~~~~~~~----~~~i~~~-~~~~~~~~D~viIEGagg~~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~  136 (217)
                               |.--+..=    +++++.. -..+-.+||++|-.=.|-+-.+ ....+.-||       -.++|+..+=.+
T Consensus        80 GVd~vEaGGPPAGsGCGGYVVGeTVKLLke~~~~~~yDVilFDVLGDVVCGGFAaPL~YAd-------~aLvva~NDFDa  152 (275)
T TIGR01281        80 GVDCVEAGGPPAGSGCGGYVVGETVKLLKELDVLDEYDVILFDVLGDVVCGGFAAPLQYAD-------YALVVAANDFDA  152 (275)
T ss_pred             CEEEEECCCCCCCCCCCCEEECCHHHHHHHCCHHHHCCEEEEEECCCEEECCCCCHHHHHC-------CEEEEECCCCHH
T ss_conf             5688714736898889874715224556652633428979996257555175464112321-------256661077217


Q ss_pred             H---HHHHHHHHHH-HH-CCCEEEEEEECCCCCC-----CHHHHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf             4---5799999999-84-7990799997697780-----0599999861998999947888888879
Q gi|254780487|r  137 I---NHSLLSLETL-RN-RNINIIGIAFIGDSMP-----KVEETIVKIGRIPHLGRLPKIDPIDPDV  193 (217)
Q Consensus       137 i---~~~~l~~~~~-~~-~g~~i~GiIlN~~~~~-----~~~~~le~~~~ipvLG~iP~~~~~~~~~  193 (217)
                      +   |....++..- ++ +.++++|||-|+....     +.-|...+..+.|+||++|+.+.+..-+
T Consensus       153 lFAANRia~av~~K~~~Gy~vkLAGiIaNR~~~~yGGGtdlle~F~~~~~~~~l~~~P~~d~IR~SR  219 (275)
T TIGR01281       153 LFAANRIAAAVREKAKSGYDVKLAGIIANRVDKEYGGGTDLLEKFAERVGTPVLGVVPRLDEIRRSR  219 (275)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEECCCHHHCCHHH
T ss_conf             8999999999999841797078732663121131178715689999862883220077711102010


No 46 
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=98.68  E-value=1.3e-06  Score=60.95  Aligned_cols=162  Identities=22%  Similarity=0.297  Sum_probs=93.9

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC--EECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             832999835898747999999999984048612--013887380689999985578731144300145103478899985
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKP--IQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEID   79 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP--v~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (217)
                      .+++++.||+..+||=++++.|.++++..++|.  ++||..-     ++.  .+        .........+.+.+-..|
T Consensus       113 ~~rvl~vGTDcavGK~tTal~l~~~l~~~Gi~a~fiaTGQTG-----ili--~g--------~Gv~iDav~~DFvaGavE  177 (302)
T pfam07755       113 AKRVLTVGTDCAVGKMTTALELERALRERGLNAAFVATGQTG-----ILI--AG--------YGVPLDAVPADFVAGAVE  177 (302)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCE-----EEE--EC--------CEEEECCCHHHHHHHHHH
T ss_conf             878999605733407899999999999779984799727613-----688--15--------247843224766767899


Q ss_pred             HCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECCCC-----------CHHHHHHHHHHHH
Q ss_conf             0235078864223288799922765556676753089999974794-489705776-----------5045799999999
Q gi|254780487|r   80 GVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFP-IILCARTSL-----------GTINHSLLSLETL  147 (217)
Q Consensus        80 ~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~-vILV~~~~~-----------g~i~~~~l~~~~~  147 (217)
                      .     ......++.|+++|||-|++.-|.+...+.. +..--+.+ +||.-+...           -.+...+-.++.+
T Consensus       178 ~-----~v~~~~~~~d~iiIEGQgSL~hP~y~gvsl~-lL~Gs~Pd~lIL~H~p~R~~~~~~~~~~iP~l~~~i~l~e~~  251 (302)
T pfam07755       178 A-----LVLDAAEEDDWIVIEGQGSLSHPAYSGVTLG-LLHGSQPDALVLCHRPGRKHRRGFPHYPLPPLEEEIELIEAL  251 (302)
T ss_pred             H-----HHHHHCCCCCEEEEECCCCCCCCCCCCCCHH-HHCCCCCCEEEEECCCCCCEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             9-----9986454678799916543236656654598-860789986999637898622787668899989999999997


Q ss_pred             HHC--CCEEEEEEECCCCCCCH-----HHHHHHHCCCCEEEEECCC
Q ss_conf             847--99079999769778005-----9999986199899994788
Q gi|254780487|r  148 RNR--NINIIGIAFIGDSMPKV-----EETIVKIGRIPHLGRLPKI  186 (217)
Q Consensus       148 ~~~--g~~i~GiIlN~~~~~~~-----~~~le~~~~ipvLG~iP~~  186 (217)
                      ...  +.++.|+-+|.......     .+.+++.+++|+.  =|..
T Consensus       252 a~~~~~~kvvgIslNt~~l~~~ea~~~~~~~~~~~glPv~--Dp~r  295 (302)
T pfam07755       252 AGTTPPAKVVGISLNTRGLSEAEAREAIERIEEELGLPVT--DPVR  295 (302)
T ss_pred             HCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEE--ECCC
T ss_conf             3647997399999557879999999999999999899747--1212


No 47 
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=98.67  E-value=3.9e-07  Score=64.11  Aligned_cols=180  Identities=17%  Similarity=0.113  Sum_probs=94.5

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHH----------HHHHH---CCC------------
Q ss_conf             98329998358987479999999999840486120138873806899----------99985---578------------
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKT----------IHRIG---RIP------------   55 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~----------~~~~~---~~~------------   55 (217)
                      |. +|-|.| .-|||||+++.-|+.+|...|.|=..-++++..|+..          +.+..   ...            
T Consensus         1 m~-~ia~yG-KGGVGKTTTavNLAaALA~~GkkVLlID~DPqgnaTs~L~~g~~~~tv~d~~~~~~~~~~~l~~~~~~~~   78 (292)
T PRK13230          1 MK-QIAFYG-KGGIGKSTTVCNLAAALSKSGKKVIVVGCDPKHDCTSNLRGGEDIPTVLDVLREKGIDKLGIETIIRENL   78 (292)
T ss_pred             CC-EEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCC
T ss_conf             96-799917-9985789899999999998799599977679775425301598775299999861754222333203244


Q ss_pred             CCCCCCCCCCC--------CCCHHHHHHHHHHH-CCCHH--HHHHH-HHHCCEEEEECCCCCCCCCCCCC---CHHHHHH
Q ss_conf             73114430014--------51034788999850-23507--88642-23288799922765556676753---0899999
Q gi|254780487|r   56 KSHIIPEKWKL--------RTPASPHLAAEIDG-VIIDP--ATINP-PDINDSIIIEGIGGLLVPLTTEY---LFIDLIE  120 (217)
Q Consensus        56 ~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~i~~--~~~~~-~~~~D~viIEGagg~~~~~~~~~---~~~dla~  120 (217)
                      .....+.+-.+        ..+......+.... ...+.  ..... .-.+|+++++-.|.+..+...-.   ..+|   
T Consensus        79 ~~~~dii~~~~~gv~~ve~g~~~~g~g~~gr~~~~~~~ll~~~~~~~~~~~D~vl~D~lg~~~~~g~~~p~~~~~Ad---  155 (292)
T PRK13230         79 LKKEDIIYEGFNGIYCVEAGGPKPGYGCAGRGVIVVIDLLKKMNVFEELGVDVVLYDVLGDVVCGGFAMPLRMGLAD---  155 (292)
T ss_pred             CCHHHEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCEEEECCCCCCCCCCCCCCCHHCCCC---
T ss_conf             65232222267862786168987664113147899999999813123308765750343556646421562020189---


Q ss_pred             HHCCCEEEEECCC---CCHHHHHHHHHHHHHHC-CCEEEEEEECCCCCC---CHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             7479448970577---65045799999999847-990799997697780---059999986199899994788888
Q gi|254780487|r  121 RWQFPIILCARTS---LGTINHSLLSLETLRNR-NINIIGIAFIGDSMP---KVEETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       121 ~l~~~vILV~~~~---~g~i~~~~l~~~~~~~~-g~~i~GiIlN~~~~~---~~~~~le~~~~ipvLG~iP~~~~~  189 (217)
                          .|++|+.+.   +.++++.+-+++.++.+ ++++.|+|+|.-...   ...+.+.+..+.++++.||+...+
T Consensus       156 ----~VlIp~q~E~~ALeg~~~l~~tI~~~~~~~~~~l~Giv~n~r~~l~~~~vv~e~~~~fg~~v~~~IPrnv~l  227 (292)
T PRK13230        156 ----QIYVVTSSDYMALYAANNICKGIKQFAKRGGSTLGGIIYNVRGSMDAFDIVSEFASKLNTNIIGKVPNSNII  227 (292)
T ss_pred             ----EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCHH
T ss_conf             ----899972738999999999999999998457975799997089886478999999998299159967996063


No 48 
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=98.65  E-value=2.3e-06  Score=59.24  Aligned_cols=183  Identities=13%  Similarity=0.084  Sum_probs=87.6

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC------------CCCCHHH--HHHHHHCCCCCCCCC---CC
Q ss_conf             983299983589874799999999998404861201388------------7380689--999985578731144---30
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM------------YEETDSK--TIHRIGRIPKSHIIP---EK   63 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~------------~~~~D~~--~~~~~~~~~~~~~~~---~~   63 (217)
                      |. .|-|+| .-|||||++|.-|+.+|...|.|-.--..            ....+..  .+........+...+   .+
T Consensus         1 ~r-~Iai~G-KGGVGKTTtavNLA~aLa~~GkkVlliDaDpq~~~t~~l~g~~~~~~~~~~l~~~~~~~~~~~~~i~~~~   78 (270)
T cd02040           1 MR-QIAIYG-KGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGF   78 (270)
T ss_pred             CC-EEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHEECCC
T ss_conf             95-899979-9857789999999999998799499986579985134652998888289988752777653889613376


Q ss_pred             --CCC---CCCHHHHHHHHHH---HCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             --014---5103478899985---02350788642232887999227655566767530899999747944897057765
Q gi|254780487|r   64 --WKL---RTPASPHLAAEID---GVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLG  135 (217)
Q Consensus        64 --~~~---~~~~~~~~~~~~~---~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g  135 (217)
                        ...   ..+...-..+..+   ............+++|++||.-.|.+-.+    ...+-+....--.|++|+.+..-
T Consensus        79 ~gv~~ip~~~~~~~~~~~gr~~~~~~~ll~~l~~~~~~~D~iliD~lg~~~~~----~~~~~i~~~~ad~viiv~t~e~~  154 (270)
T cd02040          79 GGIKCVESGGPEPGVGCAGRGVITAINLLEELGAYEDDLDFVIYDVLGDVVCG----GFAMPIREGKAQEIYIVTSGEMM  154 (270)
T ss_pred             CCCEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC----HHHCHHHHCCCCEEEEECCCCHH
T ss_conf             77064105996435121240078899999985434406988998235633321----23230355338879996288189


Q ss_pred             HHHH---HHHHHHHHHHC-CCEEEEEEECCCCCCCH---HHHHHHHCCCCEEEEECCCCCC
Q ss_conf             0457---99999999847-99079999769778005---9999986199899994788888
Q gi|254780487|r  136 TINH---SLLSLETLRNR-NINIIGIAFIGDSMPKV---EETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       136 ~i~~---~~l~~~~~~~~-g~~i~GiIlN~~~~~~~---~~~le~~~~ipvLG~iP~~~~~  189 (217)
                      ++..   .+-++..+++. +..+.|++.|.......   .+.+.+..+.++||.||+...+
T Consensus       155 al~~~~~l~k~i~~~~~~~~~~l~gvv~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~d~~v  215 (270)
T cd02040         155 ALYAANNICKGILKYAKSGGVRLGGLICNSRNTDREDELIDAFAKRLGTQMIHFVPRDNVV  215 (270)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCHHH
T ss_conf             9999999999999998346974799983786651378999999998599528777997178


No 49 
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA).  This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life.  ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities.   To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates.  A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=98.65  E-value=2.8e-06  Score=58.76  Aligned_cols=178  Identities=13%  Similarity=0.101  Sum_probs=93.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHH-HHHHHHHCCCCCC----CC--CCCCCCCC-------
Q ss_conf             3299983589874799999999998404861201388738068-9999985578731----14--43001451-------
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDS-KTIHRIGRIPKSH----II--PEKWKLRT-------   68 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~-~~~~~~~~~~~~~----~~--~~~~~~~~-------   68 (217)
                      |-||++|-+ |||||+++++++.++...|.|=.-    .+.|+ ..+.+.++.....    ..  .+.+...-       
T Consensus         1 r~i~~~GKG-GVGKTT~AaalA~~lA~~G~kVLl----vstDPahsLsd~f~~~~~~~~~~v~~~~nL~a~eid~~~~~~   75 (254)
T cd00550           1 RYIFFGGKG-GVGKTTISAATAVRLAEQGKKVLL----VSTDPAHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALE   75 (254)
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEE----EECCCCCCHHHHHCCCCCCCCCEECCCCCCEEEEECHHHHHH
T ss_conf             989996898-554899999999999968994999----958986448898488667887110366884578728899999


Q ss_pred             -------------CHHHHH----HHHHHHCCCHH--HHH---H--HHHHCCEEEEECCCC--CCCCCCCCCCHHHHHHH-
Q ss_conf             -------------034788----99985023507--886---4--223288799922765--55667675308999997-
Q gi|254780487|r   69 -------------PASPHL----AAEIDGVIIDP--ATI---N--PPDINDSIIIEGIGG--LLVPLTTEYLFIDLIER-  121 (217)
Q Consensus        69 -------------~~~~~~----~~~~~~~~i~~--~~~---~--~~~~~D~viIEGagg--~~~~~~~~~~~~dla~~-  121 (217)
                                   ......    ......-.++.  ++.   .  ...++|++||..+-.  ...-+... ...+++.. 
T Consensus        76 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~i~~~~~~~~yD~IViDtaPTGhtLrlL~lP-~~l~~~~~~  154 (254)
T cd00550          76 EYRQEVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLP-TVLSWAREI  154 (254)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCH-HHHHHHHHH
T ss_conf             9999999988632255668888999863985899999999999976069988998899856799875156-999999985


Q ss_pred             H----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC------HH-------HHH---HH-HCCCCEE
Q ss_conf             4----79448970577650457999999998479907999976977800------59-------999---98-6199899
Q gi|254780487|r  122 W----QFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPK------VE-------ETI---VK-IGRIPHL  180 (217)
Q Consensus       122 l----~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~------~~-------~~l---e~-~~~ipvL  180 (217)
                      |    ..-+++|+....-++..+.-.+++++..|+++.|+|.|+...+.      .+       +++   ++ +.++|+.
T Consensus       155 L~d~~~t~~~lV~~PE~~~v~Et~R~~~~L~~~~i~v~~vvvN~v~p~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~v~  234 (254)
T cd00550         155 LSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVA  234 (254)
T ss_pred             CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             37956558999977872169999999999997799989799958808776889999999999999999999870589679


Q ss_pred             EEECCCC
Q ss_conf             9947888
Q gi|254780487|r  181 GRLPKID  187 (217)
Q Consensus       181 G~iP~~~  187 (217)
                       .+|+++
T Consensus       235 -~vp~~~  240 (254)
T cd00550         235 -KLPLLP  240 (254)
T ss_pred             -EECCCC
T ss_conf             -815788


No 50 
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=98.58  E-value=1.4e-07  Score=66.96  Aligned_cols=176  Identities=18%  Similarity=0.144  Sum_probs=97.6

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC---CCCCH--------------------HHHHHHHHCCCCC
Q ss_conf             983299983589874799999999998404861201388---73806--------------------8999998557873
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM---YEETD--------------------SKTIHRIGRIPKS   57 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~---~~~~D--------------------~~~~~~~~~~~~~   57 (217)
                      |++.|.||.-.-|||||+.|+.|..+|-..|.|-+...+   .++-|                    ....+.+... ..
T Consensus         1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkD-Kr   79 (272)
T COG2894           1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKD-KR   79 (272)
T ss_pred             CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEEEEEHHHHCCCCCHHHHHHCC-CC
T ss_conf             96499994488876743106778999997398599996676720446664342015654013444766365676403-56


Q ss_pred             CCCCCCCCCCCCHHHHHHH-HHHHCCCHHHHHHHH-HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             1144300145103478899-985023507886422-32887999227655566767530899999747944897057765
Q gi|254780487|r   58 HIIPEKWKLRTPASPHLAA-EIDGVIIDPATINPP-DINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLG  135 (217)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g  135 (217)
                          ....+--|+|..... .+...........+. ..+|++|+...-|+-.+...-...||       ..|+|++....
T Consensus        80 ----~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~A~~~Ad-------~AiVVtnPEvS  148 (272)
T COG2894          80 ----LENLFLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKNAVYFAD-------EAIVVTNPEVS  148 (272)
T ss_pred             ----CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCC-------EEEEECCCCCC
T ss_conf             ----7852661443236722279999999999997669988996484067788886541026-------37997488755


Q ss_pred             HHHHHHHHHHHHHHC------CC-EEEEEEECCCCCCCH-------HHHHHHHCCCCEEEEECCCCC
Q ss_conf             045799999999847------99-079999769778005-------999998619989999478888
Q gi|254780487|r  136 TINHSLLSLETLRNR------NI-NIIGIAFIGDSMPKV-------EETIVKIGRIPHLGRLPKIDP  188 (217)
Q Consensus       136 ~i~~~~l~~~~~~~~------g~-~i~GiIlN~~~~~~~-------~~~le~~~~ipvLG~iP~~~~  188 (217)
                      ++-++=--+..+...      +- .-.-+|+|++.....       -+.+.+...+|++|+||..++
T Consensus       149 sVRDsDRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~liGiiPed~~  215 (272)
T COG2894         149 SVRDSDRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPLIGVIPEDQD  215 (272)
T ss_pred             CCCCCHHHEEEHHCCCCHHHCCCCCCCEEEEECCCHHHHCCCCCCCHHHHHHHHCCCEEEEECCCHH
T ss_conf             4234112202012145423307766634899716888811577253999999747744776048533


No 51 
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=98.58  E-value=2.1e-06  Score=59.51  Aligned_cols=181  Identities=11%  Similarity=0.048  Sum_probs=85.4

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCC---CCHHH-------HHHHHHCCCCCCCC--------CCCCC
Q ss_conf             29998358987479999999999840486120138873---80689-------99998557873114--------43001
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYE---ETDSK-------TIHRIGRIPKSHII--------PEKWK   65 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~---~~D~~-------~~~~~~~~~~~~~~--------~~~~~   65 (217)
                      .|-|.|=+ |||||++|+-|+.+|...|.|-..-..+.   ..+..       .+.+......+...        ..+.-
T Consensus         2 ~iai~GKG-GVGKTTtsvNLA~aLA~~GkrVlliDaD~~~~~~~~llg~~~~~~l~d~l~~~~~~~~~~~~~vi~~~~~g   80 (269)
T pfam00142         2 KIAIYGKG-GIGKSTTSQNTSAALAEMGKKVLIVGCDPKADSTRLILGGKAQPTIIDTLREKGLVEDVELEDVVKKGYGG   80 (269)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHHEECCCCC
T ss_conf             58998999-76889999999999998799099984589987414443898888478776046770224074501337787


Q ss_pred             C-CCCHH-HHHHHHHHHCCCHH---HHH--HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf             4-51034-78899985023507---886--42232887999227655566767530899999747944897057765045
Q gi|254780487|r   66 L-RTPAS-PHLAAEIDGVIIDP---ATI--NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTIN  138 (217)
Q Consensus        66 ~-~~~~~-~~~~~~~~~~~i~~---~~~--~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~  138 (217)
                      . ..+.+ +..........+..   .+.  ....++|++||.-.|++.....    .+-++...--.|++|+.+.--++.
T Consensus        81 v~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~DyiliD~~g~~~~~~~----~~~i~~~~A~~viiv~t~E~~al~  156 (269)
T pfam00142        81 IRCVESGGPEPGVGCAGRGVITAIDLLEELGAYDDLDFVLYDVLGDVVCGGF----AMPIREGKAQEVYIVTSGEMMALY  156 (269)
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCEEEEECCCCEEECCC----CCCHHHCCCCEEEEEECCCHHHHH
T ss_conf             2688689986563211078999999999821021288898533674024340----053344358879998289478999


Q ss_pred             HHH---HHHHH-HHHCCCEEEEEEECCCCCCCHH---HHHHHHCCCCEEEEECCCCCC
Q ss_conf             799---99999-9847990799997697780059---999986199899994788888
Q gi|254780487|r  139 HSL---LSLET-LRNRNINIIGIAFIGDSMPKVE---ETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       139 ~~~---l~~~~-~~~~g~~i~GiIlN~~~~~~~~---~~le~~~~ipvLG~iP~~~~~  189 (217)
                      .+.   -++.. .++.++++.|++.|+.......   +.+.+..++++||.||+...+
T Consensus       157 ~a~~l~~~i~~~~~~~~~~i~giv~n~~~~~~~~~~~~~~~~~~~~~~lg~IP~d~~v  214 (269)
T pfam00142       157 AANNICKGILKYAKSGGVRLGGLICNSRKVDDERELIDAFAEALGTQMIHFVPRDNIV  214 (269)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCHHH
T ss_conf             9999999999985057962789982686541157999999998199479977998268


No 52 
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=98.57  E-value=9.7e-07  Score=61.64  Aligned_cols=181  Identities=14%  Similarity=0.179  Sum_probs=107.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCC-----------CCC--CCCCCC-
Q ss_conf             329998358987479999999999840486120138873806899999855787311-----------443--001451-
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHI-----------IPE--KWKLRT-   68 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~-----------~~~--~~~~~~-   68 (217)
                      +.|-|-|-+ |+|||++|.-+..+|-..+.|-.+.||.+-.|......-.....+..           .+.  -..+.. 
T Consensus        32 ~~IAiYGKG-GIGKSTts~NlsAAlA~~GkkVm~IGCDPKaDSTrlLlgG~~~~TVLd~~~~~~~~~e~v~~~dv~~~g~  110 (329)
T cd02033          32 QIIAIYGKG-GIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCFKRD  110 (329)
T ss_pred             EEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHEEECCC
T ss_conf             499997688-4356168899999999779969997888846033410589888409999987288644342501786259


Q ss_pred             ------CHHHHHHHHHHHCCCHHHHHHH------HHHCCEEEEECCCCC-----CCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf             ------0347889998502350788642------232887999227655-----56676753089999974794489705
Q gi|254780487|r   69 ------PASPHLAAEIDGVIIDPATINP------PDINDSIIIEGIGGL-----LVPLTTEYLFIDLIERWQFPIILCAR  131 (217)
Q Consensus        69 ------~~~~~~~~~~~~~~i~~~~~~~------~~~~D~viIEGagg~-----~~~~~~~~~~~dla~~l~~~vILV~~  131 (217)
                            .--|.-.-...++-+..++..+      ..+.|+++-.-.|.+     ..|+-.  ..++       .|++|++
T Consensus       111 Gv~CvEsGGPEPGvGCAGRGIItai~lLe~lg~~~~d~D~V~yDVLGDVVCGGFAmPiR~--g~A~-------evyIVtS  181 (329)
T cd02033         111 GVFAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDWDFDYVLLDFLGDVVCGGFGLPIAR--DMAQ-------KVIVVGS  181 (329)
T ss_pred             CEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECCCCCCCCC--CCCC-------EEEEEEC
T ss_conf             988986679999876788730136678776377525899999922453566463353356--8762-------8999967


Q ss_pred             CCCCHH---HHHHHHHHHHHHC-C-CEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf             776504---5799999999847-9-907999976977800599999861998999947888888879
Q gi|254780487|r  132 TSLGTI---NHSLLSLETLRNR-N-INIIGIAFIGDSMPKVEETIVKIGRIPHLGRLPKIDPIDPDV  193 (217)
Q Consensus       132 ~~~g~i---~~~~l~~~~~~~~-g-~~i~GiIlN~~~~~~~~~~le~~~~ipvLG~iP~~~~~~~~~  193 (217)
                      ....++   |....++..++.. | +++.|+|.|+.......+.+.+..|+|+|..||+.+++..-+
T Consensus       182 gE~MalyAANNI~~~i~~~a~~gg~vrl~GlI~N~~~~~~e~e~fa~~~g~~~l~~vP~d~~iRr~~  248 (329)
T cd02033         182 NDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTGEAQAFAAHAGIPILAAIPADEELRRKS  248 (329)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf             8088999887899999999863897101159860688724999999971995799637877887654


No 53 
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.53  E-value=1.5e-06  Score=60.50  Aligned_cols=92  Identities=23%  Similarity=0.266  Sum_probs=73.5

Q ss_pred             HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCH-
Q ss_conf             4223288799922765556676753089999974794489705776504579999999984799079999769778005-
Q gi|254780487|r   89 NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPKV-  167 (217)
Q Consensus        89 ~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~-  167 (217)
                      ...+..|.+||.++-|...|.......+|       -+|+|+-....++++....++..+..|++ .++|+|+++.... 
T Consensus       159 ~a~E~~~~~IIDsaaG~gCpVi~sl~~aD-------~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~~~g~s~  230 (284)
T COG1149         159 HAKELADLLIIDSAAGTGCPVIASLKGAD-------LAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRYNLGDSE  230 (284)
T ss_pred             HHHHHCCEEEEECCCCCCCHHHHHHCCCC-------EEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEEECCCCCCHH
T ss_conf             55653212588579978971777641687-------79998168852366899999999983995-49999667777208


Q ss_pred             -HHHHHHHCCCCEEEEECCCCCC
Q ss_conf             -9999986199899994788888
Q gi|254780487|r  168 -EETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       168 -~~~le~~~~ipvLG~iP~~~~~  189 (217)
                       +++. +-.|+|++|.|||.+++
T Consensus       231 ie~~~-~e~gi~il~~IPyd~~i  252 (284)
T COG1149         231 IEEYC-EEEGIPILGEIPYDKDI  252 (284)
T ss_pred             HHHHH-HHCCCCEEEECCCCHHH
T ss_conf             99988-87399726878864258


No 54 
>PRK10416 cell division protein FtsY; Provisional
Probab=98.51  E-value=1.9e-05  Score=53.55  Aligned_cols=169  Identities=16%  Similarity=0.168  Sum_probs=93.1

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCC--CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             2999835898747999999999984048612013887--38068999998557873114430014510347889998502
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMY--EETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~--~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
                      -|++.|-+ |+|||+...-|++.|+..+.|++-..+.  +..=..-++.+....    .+..+.-.....|-   ..-+ 
T Consensus       297 VIl~vGvN-G~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~~w~~r~----~v~vi~~~~g~Dpa---~V~~-  367 (499)
T PRK10416        297 VILMVGVN-GVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN----NIPVIAQHTGADSA---SVIF-  367 (499)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC----CCEEEECCCCCCHH---HHHH-
T ss_conf             99997478-787898999999999977995378840667568999999984245----73698368999979---9999-


Q ss_pred             CCHHHH-HHHHHHCCEEEEECCCCCCCCCCCCCCHHH------HHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             350788-642232887999227655566767530899------99974----7944897057765045799999999847
Q gi|254780487|r   82 IIDPAT-INPPDINDSIIIEGIGGLLVPLTTEYLFID------LIERW----QFPIILCARTSLGTINHSLLSLETLRNR  150 (217)
Q Consensus        82 ~i~~~~-~~~~~~~D~viIEGagg~~~~~~~~~~~~d------la~~l----~~~vILV~~~~~g~i~~~~l~~~~~~~~  150 (217)
                         .+. ....+++|++||..+|-+..-   ..++-.      +++..    ...++||.++..|  ..++...+.+. .
T Consensus       368 ---dai~~a~~~~~DvviiDTAGRl~~~---~~LM~EL~ki~rvi~k~~~~aP~e~lLVlDa~tG--Qna~~qak~F~-e  438 (499)
T PRK10416        368 ---DAIQAAKARNVDVLIADTAGRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFH-E  438 (499)
T ss_pred             ---HHHHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC--HHHHHHHHHHH-H
T ss_conf             ---9999999729998998577643260---9999999999999972378999748999778767--78999999984-4


Q ss_pred             CCEEEEEEECCC-CCCC--HHHHHHHHCCCCEE--EEECCCCCCC
Q ss_conf             990799997697-7800--59999986199899--9947888888
Q gi|254780487|r  151 NINIIGIAFIGD-SMPK--VEETIVKIGRIPHL--GRLPKIDPID  190 (217)
Q Consensus       151 g~~i~GiIlN~~-~~~~--~~~~le~~~~ipvL--G~iP~~~~~~  190 (217)
                      -++|-|+|+.+. ....  ..-.+.+.+++||.  |+=-.++++.
T Consensus       439 ~~~ltGiIlTKlDGtAKGG~~lsi~~~~~~PI~fiG~GE~idDL~  483 (499)
T PRK10416        439 AVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR  483 (499)
T ss_pred             CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHCC
T ss_conf             279975999656778852599999999883959986798822066


No 55 
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=98.50  E-value=5.3e-06  Score=57.01  Aligned_cols=149  Identities=13%  Similarity=0.036  Sum_probs=81.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE-----------ECCC-CCCCHHHHHHHHHCCCCCCCC-------CCC
Q ss_conf             329998358987479999999999840486120-----------1388-738068999998557873114-------430
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPI-----------QSGM-YEETDSKTIHRIGRIPKSHII-------PEK   63 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv-----------~~G~-~~~~D~~~~~~~~~~~~~~~~-------~~~   63 (217)
                      |.|.||++..|.|||++++.|+.++-..+-|.|           .+.. ....+..+.....+...+...       .+.
T Consensus        36 kvi~VTS~~pgeGKTtva~nLA~~lA~~~~~~VLLVDaDlr~p~l~~~l~~~~~~Gl~d~L~~~~~~l~~~i~~~~~~~l  115 (207)
T TIGR03018        36 NLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIGRL  115 (207)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHCCCCCCHHHHEECCCCCCE
T ss_conf             09999789999988999999999999724985999953578997100138899998567743899875672342688755


Q ss_pred             CCCCC-CHHHHHHHHHHHCCCHHHHHHHHHHCC--EEEEECCCCCCCCCCCCCCHHH-HHHHHCCCEEEEECCCCCHHHH
Q ss_conf             01451-034788999850235078864223288--7999227655566767530899-9997479448970577650457
Q gi|254780487|r   64 WKLRT-PASPHLAAEIDGVIIDPATINPPDIND--SIIIEGIGGLLVPLTTEYLFID-LIERWQFPIILCARTSLGTINH  139 (217)
Q Consensus        64 ~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~D--~viIEGagg~~~~~~~~~~~~d-la~~l~~~vILV~~~~~g~i~~  139 (217)
                      ..... ...+.....+...........+.+.||  ++||+.+-      ......+. ++...+ -+++|++.+......
T Consensus       116 ~vlpag~~~~~~~~ll~s~~~~~li~~lr~~yd~~~VIiDtPP------vl~~~Da~~la~~~D-~vllVvr~~~t~~~~  188 (207)
T TIGR03018       116 SLLPAGRRHPNPTELLASQRMRSLLHELARRYPDRIIIIDTPP------LLVFSEARALARLVG-QIVLVVEEGRTTQEA  188 (207)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC------CCCCHHHHHHHHHCC-EEEEEEECCCCCHHH
T ss_conf             5751689899667654269999999999973796579983896------223236999999689-699999799878999


Q ss_pred             HHHHHHHHHHCCCEEEEEEEC
Q ss_conf             999999998479907999976
Q gi|254780487|r  140 SLLSLETLRNRNINIIGIAFI  160 (217)
Q Consensus       140 ~~l~~~~~~~~g~~i~GiIlN  160 (217)
                      ..-+++.++  +.++.|+|+|
T Consensus       189 v~~a~~~L~--~~~vlG~VlN  207 (207)
T TIGR03018       189 VKEALSALE--SCKVLGVVLN  207 (207)
T ss_pred             HHHHHHHHC--CCCEEEEEEC
T ss_conf             999999866--8980699969


No 56 
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X; InterPro: IPR010246   This entry represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase , . This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or 'iron' protein.; GO: 0005524 ATP binding, 0016628 oxidoreductase activity acting on the CH-CH group of donors NAD or NADP as acceptor, 0051539 4 iron 4 sulfur cluster binding, 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process.
Probab=98.47  E-value=6.5e-06  Score=56.46  Aligned_cols=181  Identities=15%  Similarity=0.134  Sum_probs=105.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCC----------------HHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             2999835898747999999999984048612013887380----------------689999985578731144300145
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEET----------------DSKTIHRIGRIPKSHIIPEKWKLR   67 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~----------------D~~~~~~~~~~~~~~~~~~~~~~~   67 (217)
                      -|=|.|=+ |+|||++++-|.+.+---+-.=.|-||.+-.                |...-.+..+.... ..+.-..|+
T Consensus         2 ~iAiYGKG-G~GKSFtttNLs~~~A~mgkRVL~lGCDPKhDst~~LFGGislPT~~ev~~ekk~agreEe-v~~~dv~Fk   79 (355)
T TIGR02016         2 IIAIYGKG-GIGKSFTTTNLSAKLALMGKRVLQLGCDPKHDSTSALFGGISLPTVIEVFAEKKEAGREEE-VKVSDVVFK   79 (355)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC-EEEEEEEEE
T ss_conf             58897488-9866789899999999746823540578973322213678667508899999865187320-566117872


Q ss_pred             CCHH-------------HHHHHHHHHCCCHHHHH------HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEE
Q ss_conf             1034-------------78899985023507886------4223288799922765556676753089999974794489
Q gi|254780487|r   68 TPAS-------------PHLAAEIDGVIIDPATI------NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIIL  128 (217)
Q Consensus        68 ~~~~-------------~~~~~~~~~~~i~~~~~------~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vIL  128 (217)
                      ....             |..-...=++-|..=|.      -....-|+||+.=.|-+..+-    .-.=+||.|--.||+
T Consensus        80 ~~I~~~~~~vyg~ElGGPeVGRGCGGRGIi~GFd~LEKlG~~~W~~D~vlmDFLGDVVCGG----FatPlaRslaeeVi~  155 (355)
T TIGR02016        80 RDIMNFAATVYGIELGGPEVGRGCGGRGIIFGFDLLEKLGLFEWELDFVLMDFLGDVVCGG----FATPLARSLAEEVIV  155 (355)
T ss_pred             CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHEEEECCCCEEECC----CCCHHHHHHHCCEEE
T ss_conf             3368898745788817871155468753101025665527440002000200058677566----443123532024377


Q ss_pred             EECCCCCHH---HHHHHHHHHHHHCC--CEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             705776504---57999999998479--907999976977800599999861998999947888888
Q gi|254780487|r  129 CARTSLGTI---NHSLLSLETLRNRN--INIIGIAFIGDSMPKVEETIVKIGRIPHLGRLPKIDPID  190 (217)
Q Consensus       129 V~~~~~g~i---~~~~l~~~~~~~~g--~~i~GiIlN~~~~~~~~~~le~~~~ipvLG~iP~~~~~~  190 (217)
                      |++.+++|+   |....+.+|++..|  .+++|+|+|++-..=.++...+..+||||..||+...+.
T Consensus       156 ~~sNDrQSly~aNNic~A~~YFr~~GGr~~llGlvvNrDDGsG~A~~fA~~~gipvLa~iP~d~~~R  222 (355)
T TIGR02016       156 VTSNDRQSLYVANNICSAAEYFRKLGGRSKLLGLVVNRDDGSGVAEAFAKEVGIPVLAKIPLDRKVR  222 (355)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCHHC
T ss_conf             6137436888886698899999861886046788986468871898989870993475267650010


No 57 
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=98.42  E-value=6.7e-06  Score=56.38  Aligned_cols=161  Identities=19%  Similarity=0.179  Sum_probs=87.4

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE--ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             8329998358987479999999999840486120--13887380689999985578731144300145103478899985
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPI--QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEID   79 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv--~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (217)
                      .+++++.||+.-+||-+++.-|-++++..|+|+.  +||..-     .+.  .    +.    .+........+.+...+
T Consensus       148 a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtg-----il~--~----~~----gvvvdav~~DfaAGave  212 (339)
T COG3367         148 AKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTG-----ILI--A----DD----GVVVDAVVMDFAAGAVE  212 (339)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCEE-----EEE--E----CC----CEEECCHHHHHHHHHHH
T ss_conf             768999335632104388999999999709863157607604-----688--5----27----46753036888988888


Q ss_pred             HCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEE-EEECCCCC----------HHHHHHHHHHHHH
Q ss_conf             023507886422328879992276555667675308999997479448-97057765----------0457999999998
Q gi|254780487|r   80 GVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPII-LCARTSLG----------TINHSLLSLETLR  148 (217)
Q Consensus        80 ~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vI-LV~~~~~g----------~i~~~~l~~~~~~  148 (217)
                      .    ..+....+++|+++|||-|++-.|.+ +.+.. +......+++ |+-+....          .+.....-++.+ 
T Consensus       213 ~----~v~~~~e~~~Dii~VEGQgsl~HP~y-~vtl~-il~gs~PDavvL~H~P~r~~~~g~P~~ip~leevi~l~e~l-  285 (339)
T COG3367         213 S----AVYEAEEKNPDIIFVEGQGSLTHPAY-GVTLG-ILHGSAPDAVVLCHDPNRKYRDGFPEPIPPLEEVIALYELL-  285 (339)
T ss_pred             H----HHHHHHHCCCCEEEEECCCCCCCCCC-CCCHH-HHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC-
T ss_conf             8----88876522898799906534347776-52143-30477897699974699752367987689889988999871-


Q ss_pred             HCCCEEEEEEECCCC--CCCHHHHH---HHHCCCCEEEEECC
Q ss_conf             479907999976977--80059999---98619989999478
Q gi|254780487|r  149 NRNINIIGIAFIGDS--MPKVEETI---VKIGRIPHLGRLPK  185 (217)
Q Consensus       149 ~~g~~i~GiIlN~~~--~~~~~~~l---e~~~~ipvLG~iP~  185 (217)
                       -+.++.|+.+|--+  .+..++..   +..+|+|+...+-+
T Consensus       286 -~~a~Vvgi~lNtr~~dE~~are~~a~l~~efglP~~Dp~~~  326 (339)
T COG3367         286 -SNAKVVGIALNTRNLDEEEARELCAKLEAEFGLPVTDPLRF  326 (339)
T ss_pred             -CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             -67857999924444686889999999864039742263002


No 58 
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=98.40  E-value=6.8e-05  Score=50.08  Aligned_cols=74  Identities=9%  Similarity=0.110  Sum_probs=51.9

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC------CH-------HHHHH---H-HCCCCEEEEECCC
Q ss_conf             944897057765045799999999847990799997697780------05-------99999---8-6199899994788
Q gi|254780487|r  124 FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMP------KV-------EETIV---K-IGRIPHLGRLPKI  186 (217)
Q Consensus       124 ~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~------~~-------~~~le---~-~~~ipvLG~iP~~  186 (217)
                      .-+++|+....-++..+.-.++.++..|+++.++|+|+...+      ..       .++++   + +.++|+. .+|++
T Consensus       207 T~f~lV~~pe~~~i~Et~R~~~~L~~~~i~v~~vvvNrvlp~~~~~~~~~~~r~~~Q~~~L~~i~~~f~~~pi~-~vpl~  285 (304)
T pfam02374       207 TSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQVLPETEQDCPFCEARKEIQQKYLKEIEELFSDLPVA-KLPLL  285 (304)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE-EECCC
T ss_conf             49999837984379999999999997799889798807788888987999999999999999999865798689-80588


Q ss_pred             C-CC-CHHHHHHHH
Q ss_conf             8-88-887999999
Q gi|254780487|r  187 D-PI-DPDVLHQKF  198 (217)
Q Consensus       187 ~-~~-~~~~l~~~~  198 (217)
                      + ++ ..+.|....
T Consensus       286 ~~Ev~G~~aL~~la  299 (304)
T pfam02374       286 PEEVVGLEALEKFS  299 (304)
T ss_pred             CCCCCCHHHHHHHH
T ss_conf             88998899999999


No 59 
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.39  E-value=8.1e-05  Score=49.61  Aligned_cols=174  Identities=17%  Similarity=0.165  Sum_probs=86.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE--ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             29998358987479999999999840486120--1388738068999998557873114430014510347889998502
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI--QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv--~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
                      .|+..|- +|+|||+.++-|++.++..+.|+.  .+...+..=..-++......    .+..+....+.+....      
T Consensus        77 vI~lvG~-~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l----~v~~~~~~~~~~~~~~------  145 (270)
T PRK06731         77 TIALIGP-TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI----GFEVIAVRDEAAMTRA------  145 (270)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHH----CCCEECCCCHHHHHHH------
T ss_conf             8999888-9898899999999999867990899983888888999999999981----9953545887899999------


Q ss_pred             CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH---HHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             350788642232887999227655566767530899999---74794-48970577650457999999998479907999
Q gi|254780487|r   82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE---RWQFP-IILCARTSLGTINHSLLSLETLRNRNINIIGI  157 (217)
Q Consensus        82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~---~l~~~-vILV~~~~~g~i~~~~l~~~~~~~~g~~i~Gi  157 (217)
                         .........+|++||..+|-...   ....+.++.+   ..+.. ++||.++..+.-+ ..-..+.++  .+++-|+
T Consensus       146 ---~~~~~~~~~~DvilIDTAGR~~~---d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~-~~~~~~~f~--~~~i~gv  216 (270)
T PRK06731        146 ---LTYFKEEARVDYILIDTAGKNYR---ASETVEEMIETMGQVEPDYICLTLSASMKSKD-MIEIITNFK--DIHIDGI  216 (270)
T ss_pred             ---HHHHHHHCCCCEEEEECCCCCCC---CHHHHHHHHHHHCCCCCCEEEEEEECCCCHHH-HHHHHHHHC--CCCCCEE
T ss_conf             ---99999976999999979998714---69999999998606389879999868777699-999999807--7999889


Q ss_pred             EECC-CCCCCHHH--HHHHHCCCCEE--EEECCC----CCCCHHHHHHH
Q ss_conf             9769-77800599--99986199899--994788----88888799999
Q gi|254780487|r  158 AFIG-DSMPKVEE--TIVKIGRIPHL--GRLPKI----DPIDPDVLHQK  197 (217)
Q Consensus       158 IlN~-~~~~~~~~--~le~~~~ipvL--G~iP~~----~~~~~~~l~~~  197 (217)
                      |+.+ +.....-.  .+...++.|+.  |.=..+    +..+++.+++.
T Consensus       217 IlTKlD~ta~gG~als~~~~~~~PI~fig~Ge~VpeDi~~~~~~~la~r  265 (270)
T PRK06731        217 VFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQ  265 (270)
T ss_pred             EEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHHHH
T ss_conf             9965358997729999999988597999459997021413799999999


No 60 
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=98.38  E-value=7.3e-06  Score=56.15  Aligned_cols=71  Identities=11%  Similarity=0.036  Sum_probs=48.9

Q ss_pred             HHHCCEEEEECCCCCCCCCCCCCCHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             2328879992276555667675308999997-4794489705776504579999999984799079999769778
Q gi|254780487|r   91 PDINDSIIIEGIGGLLVPLTTEYLFIDLIER-WQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSM  164 (217)
Q Consensus        91 ~~~~D~viIEGagg~~~~~~~~~~~~dla~~-l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~  164 (217)
                      ..++|++||..+-   ++-.-.....+..+. -..-+++|+....-.+..+.-.++.+++.|+++.|+|+|+...
T Consensus       111 ~~~yD~IVvDtpP---TGhtlrlL~~~~L~d~~~t~~~lVt~Pe~~~~~et~r~~~~L~~~gi~v~~vVvN~v~p  182 (217)
T cd02035         111 EGLYDVIVFDTAP---TGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLP  182 (217)
T ss_pred             CCCCCEEEECCCC---CHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             4899889982898---55699986788724888767999957762179999999999997799889898958827


No 61 
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=98.37  E-value=8.5e-06  Score=55.75  Aligned_cols=179  Identities=13%  Similarity=-0.005  Sum_probs=83.2

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC------------CCCCCCHHHHHHHHHCCCCCCCC-----CCC
Q ss_conf             9832999835898747999999999984048612013------------88738068999998557873114-----430
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS------------GMYEETDSKTIHRIGRIPKSHII-----PEK   63 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~------------G~~~~~D~~~~~~~~~~~~~~~~-----~~~   63 (217)
                      |+ .|-|+.-.-|||||++++.|+.+|...|+|-..-            |.+.+.+.. +........+...     ...
T Consensus         1 Mk-iIav~n~KGGVGKTT~avNLA~~La~~G~rVLlIDlDpQ~~l~~~~g~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~   78 (246)
T TIGR03371         1 MK-VIAIVGIKGGVGRTTLTAALASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDG-WARALLAGEDWRAAAYRSSDG   78 (246)
T ss_pred             CE-EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCCCC-HHHHHHCCCCHHHHHEECCCC
T ss_conf             93-9999759998549999999999999689978999759998503224888753456-999982799888952557898


Q ss_pred             CCCCCCHH-HHHHHHHHHC-----CCHHHHHHHH-HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCH
Q ss_conf             01451034-7889998502-----3507886422-328879992276555667675308999997479448970577650
Q gi|254780487|r   64 WKLRTPAS-PHLAAEIDGV-----IIDPATINPP-DINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGT  136 (217)
Q Consensus        64 ~~~~~~~~-~~~~~~~~~~-----~i~~~~~~~~-~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~  136 (217)
                      ..+ -|.. ..........     ........+. ..+|++||....++.      .........-+ .+++++.....+
T Consensus        79 ~~~-ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~l~------~~~~~al~aad-~vlipv~~~~~s  150 (246)
T TIGR03371        79 VLF-LPYGTLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDLPRGPS------PITDQALAAAD-LVLVVVNADAAC  150 (246)
T ss_pred             EEE-EECCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC------HHHHHHHHHCC-EEEEEECCCHHH
T ss_conf             289-7089847778987604478999999986303679889994899874------99999999889-479981899899


Q ss_pred             HHHHHHHHHHHHHC--CCEEEEEEECCCCCC--CH---HHHHHHHCCCCEE-EEECCCCCC
Q ss_conf             45799999999847--990799997697780--05---9999986199899-994788888
Q gi|254780487|r  137 INHSLLSLETLRNR--NINIIGIAFIGDSMP--KV---EETIVKIGRIPHL-GRLPKIDPI  189 (217)
Q Consensus       137 i~~~~l~~~~~~~~--g~~i~GiIlN~~~~~--~~---~~~le~~~~ipvL-G~iP~~~~~  189 (217)
                      .....-....+.+.  .....++++|+....  ..   .+.+++..+.+++ +.||+...+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~I~~~~~v  211 (246)
T TIGR03371       151 YATLHQLALALLARSVPPDGIHYLINQFQPARQLSRDVRAVLRATLGSRLLPMFVHRDEAV  211 (246)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf             9999999999998427767517886302640158999999999974988162268997799


No 62 
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.35  E-value=6.1e-06  Score=56.64  Aligned_cols=127  Identities=17%  Similarity=0.184  Sum_probs=86.0

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf             99983589874799999999998404861201388738068999998557873114430014510347889998502350
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIID   84 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   84 (217)
                      |-|++-..|||||++++-|+.+|...|.|-.-    -|.|.       +..                             
T Consensus         2 i~v~sgKgGvGkt~~~~nLa~~la~~G~~vll----~D~D~-------g~a-----------------------------   41 (139)
T cd02038           2 IAVTSGKGGVGKTNISANLALALAKLGKRVLL----LDADL-------GLA-----------------------------   41 (139)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE----EECCC-------CCC-----------------------------
T ss_conf             89964999983999999999999978996999----98989-------996-----------------------------


Q ss_pred             HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH-HCCCEEEEEEECCCC
Q ss_conf             7886422328879992276555667675308999997479448970577650457999999998-479907999976977
Q gi|254780487|r   85 PATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLR-NRNINIIGIAFIGDS  163 (217)
Q Consensus        85 ~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~-~~g~~i~GiIlN~~~  163 (217)
                            .-++|++||....|...      ...++...-+ .+++|+.....++.+++..+..+. +.+..-..+|+|+..
T Consensus        42 ------n~~~D~viiD~~aG~~~------~~~~~~~~ad-~~lvV~tpeptSi~DAYalIK~l~~~~~~~~~~lvvN~v~  108 (139)
T cd02038          42 ------NLDYDYIIIDTGAGISD------NVLDFFLAAD-EVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAE  108 (139)
T ss_pred             ------CCCCCEEEEECCCCCCH------HHHHHHHHCC-CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             ------57999999948999877------8999999589-5799958970679999999999999639997599995689


Q ss_pred             CCCHH--------HHHHHHCC--CCEEEEEC
Q ss_conf             80059--------99998619--98999947
Q gi|254780487|r  164 MPKVE--------ETIVKIGR--IPHLGRLP  184 (217)
Q Consensus       164 ~~~~~--------~~le~~~~--ipvLG~iP  184 (217)
                      .+...        +..+++.+  ++.+|+||
T Consensus       109 s~~ea~~~~~~l~~v~~kfL~v~l~~lG~IP  139 (139)
T cd02038         109 SPKEGKKVFKRLSNVSNRFLGLSLDYLGFIP  139 (139)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCEECC
T ss_conf             9999999999999999998099831071485


No 63 
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.35  E-value=4.3e-05  Score=51.36  Aligned_cols=90  Identities=12%  Similarity=0.060  Sum_probs=49.0

Q ss_pred             HCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-HHHHH
Q ss_conf             28879992276555667675308999997479448970577650457999999998479907999976977800-59999
Q gi|254780487|r   93 INDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPK-VEETI  171 (217)
Q Consensus        93 ~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~-~~~~l  171 (217)
                      .+|++||..--|+-.=.-.-.-..|       -+|.|++...-++-.+--..+..+..|++=.++|+|+..... ...+.
T Consensus       133 ~~e~VivDtEAGiEHfgRg~~~~vD-------~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~e~~~~~~  205 (255)
T COG3640         133 RYEVVIVDTEAGIEHFGRGTIEGVD-------LVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEEEELLREL  205 (255)
T ss_pred             CCCEEEEECCCCHHHHCCCCCCCCC-------EEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHH
T ss_conf             6748999633456665656325787-------799995787788888999999998718754999995034115777765


Q ss_pred             HHHCCCCEEEEECCCCCC
Q ss_conf             986199899994788888
Q gi|254780487|r  172 VKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       172 e~~~~ipvLG~iP~~~~~  189 (217)
                      ..-.+.+++|+|||.+.+
T Consensus       206 ~~~~~~~vlg~iP~d~~v  223 (255)
T COG3640         206 AEELGLEVLGVIPYDPEV  223 (255)
T ss_pred             HHCCCCEEEEECCCCHHH
T ss_conf             322797489971698788


No 64 
>KOG3022 consensus
Probab=98.30  E-value=1.2e-05  Score=54.86  Aligned_cols=181  Identities=14%  Similarity=0.081  Sum_probs=98.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE-----CCCCC----CCHHHHHHHHHCCCCCC------CCCCCCCCC
Q ss_conf             3299983589874799999999998404861201-----38873----80689999985578731------144300145
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ-----SGMYE----ETDSKTIHRIGRIPKSH------IIPEKWKLR   67 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~-----~G~~~----~~D~~~~~~~~~~~~~~------~~~~~~~~~   67 (217)
                      ..|.|+.-.-|||||++|.-|+.+|...++|=..     +|.--    ..+.....+......+.      ..+..-.+.
T Consensus        48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfLl  127 (300)
T KOG3022          48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFLL  127 (300)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCCCEEEECCCCCEEEEECCCEEEEEEEEEC
T ss_conf             58999867887761689999999986179717997503558770534087774455048874144443876788756432


Q ss_pred             CCHHHHHHH--HHHHCCCHHHHHHHH-HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf             103478899--985023507886422-32887999227655566767530899999747944897057765045799999
Q gi|254780487|r   68 TPASPHLAA--EIDGVIIDPATINPP-DINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSL  144 (217)
Q Consensus        68 ~~~~~~~~~--~~~~~~i~~~~~~~~-~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~  144 (217)
                      .+.+...-+  ..-+..+...+.... .+-|++||+..-|..+.   -.+..+.++.- .-.|+|+..+.-++.++.-.+
T Consensus       128 ~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDe---hls~~~~~~~~-~gAviVTTPQ~vAl~Dv~K~i  203 (300)
T KOG3022         128 KPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDE---HLSLVQFLRES-DGAVIVTTPQEVALQDVRKEI  203 (300)
T ss_pred             CCCCCCCEEECHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH---HHHEEECCCCC-CCEEEEECCHHHHHHHHHHHH
T ss_conf             88876626545478899999971688777677999589998701---43100004455-734998172055668888650


Q ss_pred             HHHHHCCCEEEEEEECCCC-------CC------CHHHHHHHHCCCCEEEEECCCC
Q ss_conf             9998479907999976977-------80------0599999861998999947888
Q gi|254780487|r  145 ETLRNRNINIIGIAFIGDS-------MP------KVEETIVKIGRIPHLGRLPKID  187 (217)
Q Consensus       145 ~~~~~~g~~i~GiIlN~~~-------~~------~~~~~le~~~~ipvLG~iP~~~  187 (217)
                      .+++..+++|.|+|=|...       ..      ...+.+.+..|+|.||.||-.+
T Consensus       204 ~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld~  259 (300)
T KOG3022         204 DFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPLDP  259 (300)
T ss_pred             HHHHHCCCCEEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHHCCCCEEEECCCCH
T ss_conf             26664598568889625553078878755333676289999872997575067887


No 65 
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=98.20  E-value=0.00019  Score=47.35  Aligned_cols=177  Identities=16%  Similarity=0.180  Sum_probs=95.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCC----------CCCC--CCCCCCH
Q ss_conf             329998358987479999999999840486120138873806899999855787311----------4430--0145103
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHI----------IPEK--WKLRTPA   70 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~----------~~~~--~~~~~~~   70 (217)
                      ++|-|-|-+ |+||++++.-+..++...+.|-.+.||.+-.|..+...-.....+..          .+.+  ..+....
T Consensus         2 r~iAiYGKG-GIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~   80 (278)
T COG1348           2 RQIAIYGKG-GIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFG   80 (278)
T ss_pred             CEEEEECCC-CCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHEECCCC
T ss_conf             379996278-7673126778999999729817997479876327777478666569999986186445887782120678


Q ss_pred             --------HHHHHHHHHHCCCHHHHH---H---HHHHCCEEEEECCC-----CCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf             --------478899985023507886---4---22328879992276-----5556676753089999974794489705
Q gi|254780487|r   71 --------SPHLAAEIDGVIIDPATI---N---PPDINDSIIIEGIG-----GLLVPLTTEYLFIDLIERWQFPIILCAR  131 (217)
Q Consensus        71 --------~~~~~~~~~~~~i~~~~~---~---~~~~~D~viIEGag-----g~~~~~~~~~~~~dla~~l~~~vILV~~  131 (217)
                              -|.--....++-+-.+..   +   ....-|+++-.=.|     |...|+-.++  +|       .+.+|++
T Consensus        81 gv~CVEsGGPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPiReg~--Ad-------eiyIVtS  151 (278)
T COG1348          81 GVKCVESGGPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPIREGY--AD-------EIYIVTS  151 (278)
T ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEECCEEEEHHCCC--CC-------EEEEEEC
T ss_conf             53774259989998846511999999999818730128789995357734746000200266--63-------7999956


Q ss_pred             CCCCHHHHH---HHHH-HHHHHCCCEEEEEEECCCCCCCHHHHHHH---HCCCCEEEEECCCCCC
Q ss_conf             776504579---9999-99984799079999769778005999998---6199899994788888
Q gi|254780487|r  132 TSLGTINHS---LLSL-ETLRNRNINIIGIAFIGDSMPKVEETIVK---IGRIPHLGRLPKIDPI  189 (217)
Q Consensus       132 ~~~g~i~~~---~l~~-~~~~~~g~~i~GiIlN~~~~~~~~~~le~---~~~ipvLG~iP~~~~~  189 (217)
                      ...-++..+   .-.+ ++.++.++++.|+|.|+-+...-.+.+++   ..+-|+++.||+.+.+
T Consensus       152 ge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsR~~~~e~e~v~~fa~~igt~li~~vPr~~iv  216 (278)
T COG1348         152 GEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQLIHFVPRDNIV  216 (278)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHH
T ss_conf             83589999889999999987337963145774577764379999999998488527633512788


No 66 
>KOG0780 consensus
Probab=98.03  E-value=9.4e-05  Score=49.20  Aligned_cols=175  Identities=14%  Similarity=0.071  Sum_probs=92.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      -|++.|- .|+|||++++-|+..+++.|||+--.-.+...-+.+.+-.  .......+..|..-....|-..+..-    
T Consensus       103 VimfVGL-qG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLk--qnA~k~~iP~ygsyte~dpv~ia~eg----  175 (483)
T KOG0780         103 VIMFVGL-QGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLK--QNATKARVPFYGSYTEADPVKIASEG----  175 (483)
T ss_pred             EEEEEEC-CCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH--HHHHHHCCEEEECCCCCCHHHHHHHH----
T ss_conf             8999830-5788630089999999846872457760224530689999--87674077068403665558999999----


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC-
Q ss_conf             078864223288799922765556676753089999974794-489705776504579999999984799079999769-
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFP-IILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG-  161 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~-vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~-  161 (217)
                        ...--.+++|++||+.+|-.-..-.....+.++.+.++.+ ||+|.++.-|   ++.......-..-+.+-++|+.. 
T Consensus       176 --v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKl  250 (483)
T KOG0780         176 --VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVGAVILTKL  250 (483)
T ss_pred             --HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC---HHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             --998886397289982787301248999999999851598738999856200---767999998877615403799722


Q ss_pred             CCCCCHHHH--HHHHCCCCEE--EEECCCCCCC
Q ss_conf             778005999--9986199899--9947888888
Q gi|254780487|r  162 DSMPKVEET--IVKIGRIPHL--GRLPKIDPID  190 (217)
Q Consensus       162 ~~~~~~~~~--le~~~~ipvL--G~iP~~~~~~  190 (217)
                      +.+...--.  ....|+.||.  |+=-++++++
T Consensus       251 DGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE  283 (483)
T KOG0780         251 DGHAKGGGALSAVAATKSPIIFIGTGEHMDDLE  283 (483)
T ss_pred             CCCCCCCCEEEEHHHHCCCEEEEECCCCCCCCC
T ss_conf             567777734530354079879981675511157


No 67 
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.01  E-value=0.00051  Score=44.60  Aligned_cols=160  Identities=17%  Similarity=0.193  Sum_probs=79.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE--ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             29998358987479999999999840486120--1388738068999998557873114430014510347889998502
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI--QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv--~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
                      -|+..|. ||||||+..+-|++.++..+.|..  .+...+-.-...++.......    +..+....+..+......   
T Consensus         2 Vi~lvGp-tGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~----v~~~~~~~~~~~~~~~~~---   73 (173)
T cd03115           2 VILLVGL-QGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVG----VPVFEEGEGKDPVSIAKR---   73 (173)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCC----CEEEECCCCCCHHHHHHH---
T ss_conf             9999899-99988999999999999769928999748875779999999999749----859922775587999999---


Q ss_pred             CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH---HC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             3507886422328879992276555667675308999997---47-9448970577650457999999998479907999
Q gi|254780487|r   82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIER---WQ-FPIILCARTSLGTINHSLLSLETLRNRNINIIGI  157 (217)
Q Consensus        82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~---l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~Gi  157 (217)
                         .......+++|+++|..+|-..   .......++...   .+ -.++||.++..+  .++.-....+. ..+++-|+
T Consensus        74 ---~~~~~~~~~~D~IlIDTaGr~~---~d~~~~~el~~l~~~~~p~~~~LVl~a~~~--~~~~~~~~~f~-~~~~~~~~  144 (173)
T cd03115          74 ---AIEHAREENFDVVIVDTAGRLQ---IDENLMEELKKIKRVVKPDEVLLVVDAMTG--QDAVNQAKAFN-EALGITGV  144 (173)
T ss_pred             ---HHHHHHHCCCCEEEEECCCCCC---CCHHHHHHHHHHHHHHCCCCCEEECCCCCH--HHHHHHHHHHH-HCCCCCEE
T ss_conf             ---9999875689989997888787---999999999999864489721574246550--65899999987-42799789


Q ss_pred             EECCCC-CCCHHH--HHHHHCCCCEE
Q ss_conf             976977-800599--99986199899
Q gi|254780487|r  158 AFIGDS-MPKVEE--TIVKIGRIPHL  180 (217)
Q Consensus       158 IlN~~~-~~~~~~--~le~~~~ipvL  180 (217)
                      |+.+.- ....-.  .+...+++|+.
T Consensus       145 I~TKlDet~~~G~~ls~~~~~~~Pi~  170 (173)
T cd03115         145 ILTKLDGDARGGAALSIRAVTGKPIK  170 (173)
T ss_pred             EEEEECCCCCCCHHHHHHHHHCCCEE
T ss_conf             99714389975799999999890908


No 68 
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325    The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane.    This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=97.98  E-value=4.9e-05  Score=50.97  Aligned_cols=170  Identities=14%  Similarity=0.146  Sum_probs=95.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      -|+..|= .|+||||.+.-|+.+++++||||--.+. +.=-+.-..+ +..+...+.+++|          -...|.+++
T Consensus       123 ViMfVGL-QGaGKTTtctKLA~YYk~rGfK~~lvCA-DTFRAGAFdQ-LkqNA~kA~iPFY----------Gsy~E~DPV  189 (453)
T TIGR01425       123 VIMFVGL-QGAGKTTTCTKLAYYYKRRGFKPALVCA-DTFRAGAFDQ-LKQNATKAKIPFY----------GSYLESDPV  189 (453)
T ss_pred             EEEEEEC-CCCCHHHHHHHHHHHHHCCCCCEEEECC-CCCCCCHHHH-HHHHHHHCCCCCC----------CCCCCCCCE
T ss_conf             5888621-4887156687877776326643256517-7542324899-9874764489712----------010489870


Q ss_pred             HHHHHH----HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             078864----223288799922765556676753089999974794-489705776504579999999984799079999
Q gi|254780487|r   84 DPATIN----PPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFP-IILCARTSLGTINHSLLSLETLRNRNINIIGIA  158 (217)
Q Consensus        84 ~~~~~~----~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~-vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiI  158 (217)
                      ..|+.-    -.+++|++||..+|==--.-.-..-+.++..+.+-+ +|.|-|   |+|.+|.-..+-+-....++..||
T Consensus       190 kiA~EGv~~Fk~E~~diIivDTSGRHkQe~~LF~Em~qv~~Ai~Pd~iifVMD---GsIGQAA~~QAkAFK~~~~vGSvI  266 (453)
T TIGR01425       190 KIASEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMVQVAEAIKPDSIIFVMD---GSIGQAAFSQAKAFKDSVEVGSVI  266 (453)
T ss_pred             EEECCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEC---CCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             78002011322127847998379873225888899876863349983699806---616678899999863003500388


Q ss_pred             ECC-CCCCCHHHHHH--HHCCCCEE--EEECCCCCC
Q ss_conf             769-77800599999--86199899--994788888
Q gi|254780487|r  159 FIG-DSMPKVEETIV--KIGRIPHL--GRLPKIDPI  189 (217)
Q Consensus       159 lN~-~~~~~~~~~le--~~~~ipvL--G~iP~~~~~  189 (217)
                      +-+ +.+...-=.|.  .-|+-||.  |+=-|++++
T Consensus       267 iTKLDGHAkGGGALSAVAATKsPiiFIGTGEhv~d~  302 (453)
T TIGR01425       267 ITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDDF  302 (453)
T ss_pred             EECCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf             751567767623788987535977981377502760


No 69 
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97  E-value=0.00099  Score=42.80  Aligned_cols=158  Identities=15%  Similarity=0.078  Sum_probs=81.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC--CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             32999835898747999999999984048612013--8873806899999855787311443001451034788999850
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS--GMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG   80 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~--G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (217)
                      +-|.+.|- +|||||+.++-|++.++..+.|+.-.  ...+..=..-++.+....    .+..+....|.+...      
T Consensus       207 ~VIaLVGv-nGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rl----gVpV~~~~dpa~l~~------  275 (407)
T PRK12726        207 RIISLIGQ-TGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKL----DVELIVATSPAELEE------  275 (407)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH----CCEEEEECCHHHHHH------
T ss_conf             08999899-9897899999999999977991799970667788999999999997----964998188899999------


Q ss_pred             CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCC--C--EEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             23507886422328879992276555667675308999997479--4--4897057765045799999999847990799
Q gi|254780487|r   81 VIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQF--P--IILCARTSLGTINHSLLSLETLRNRNINIIG  156 (217)
Q Consensus        81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~--~--vILV~~~~~g~i~~~~l~~~~~~~~g~~i~G  156 (217)
                         ...+....+..|++||..||=..   .....+.++.+..+.  |  .+||+++..+..+..-   .+-+...+++-|
T Consensus       276 ---av~~~a~~~~~DvVIIDTAGRl~---~d~~Lm~EL~ki~~vi~P~~~lLV~dag~~~~~v~q---a~~~~~~v~ItG  346 (407)
T PRK12726        276 ---AVQYMTYVNCVDHILIDTVGRNY---LAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMT---ILPKLAEIPIDG  346 (407)
T ss_pred             ---HHHHHHHCCCCCEEEEECCCCCC---CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH---HHHHHCCCCCCE
T ss_conf             ---99999862899989996999881---349999999998733289669999367566999999---998704799987


Q ss_pred             EEECCC-CCCC--HHHHHHHHCCCCEE
Q ss_conf             997697-7800--59999986199899
Q gi|254780487|r  157 IAFIGD-SMPK--VEETIVKIGRIPHL  180 (217)
Q Consensus       157 iIlN~~-~~~~--~~~~le~~~~ipvL  180 (217)
                      +|+.+- ....  ..=.+...+++|+.
T Consensus       347 iILTKLDgtAKGG~aLSi~~~~~lPI~  373 (407)
T PRK12726        347 FIITKMDETTRIGDLYTVMQETNLPVL  373 (407)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHCCCEE
T ss_conf             999701478985399999999888979


No 70 
>PHA02518 ParA-like protein; Provisional
Probab=97.94  E-value=0.00027  Score=46.33  Aligned_cols=158  Identities=11%  Similarity=0.052  Sum_probs=81.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH-HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             32999835898747999999999984048612013887380689-99998557873114430014510347889998502
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK-TIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
                      |-|-|+...-|||||+++.-|+.+|...|+|-.-    .|.|++ ....+...........+. .  ...+         
T Consensus         1 KIIav~n~KGGvGKTT~a~nLA~~la~~G~~Vll----iD~DpQ~s~~~w~~~r~~~~~~~~~-~--~~~~---------   64 (211)
T PHA02518          1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLL----VDLDPQGSSTDWAEAREEGEPLIPV-V--RMGK---------   64 (211)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE----EECCCCCCHHHHHHHCCCCCCCCCH-H--HCCH---------
T ss_conf             9899980899974999999999999978994899----9779996788999852268997401-2--1367---------


Q ss_pred             CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEE-ECCC---CCHHHHHHHHHHHHH--HCCCEEE
Q ss_conf             350788642232887999227655566767530899999747944897-0577---650457999999998--4799079
Q gi|254780487|r   82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILC-ARTS---LGTINHSLLSLETLR--NRNINII  155 (217)
Q Consensus        82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV-~~~~---~g~i~~~~l~~~~~~--~~g~~i~  155 (217)
                      .+......+..+||++||...+.+      +..+....  .-++.+|| +...   ..+..+.+-.++..+  +.+.+..
T Consensus        65 ~~~~~l~~~~~~yD~viID~pp~~------~~~~~~al--~aaD~vliP~~ps~~d~~~~~~~~~~i~~~~~~~~~~~~~  136 (211)
T PHA02518         65 SIRADLPKVASGYDYVVVDGAPQD------SELARAAL--RIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKF  136 (211)
T ss_pred             HHHHHHHHHCCCCCEEEECCCCCC------HHHHHHHH--HHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             799999974067888998899974------29999999--9589699963786878999999999999999866567516


Q ss_pred             EEEECCCCCCC-----HHHHHHHHCCCCEEE-EECC
Q ss_conf             99976977800-----599999861998999-9478
Q gi|254780487|r  156 GIAFIGDSMPK-----VEETIVKIGRIPHLG-RLPK  185 (217)
Q Consensus       156 GiIlN~~~~~~-----~~~~le~~~~ipvLG-~iP~  185 (217)
                      +++.|......     ..+.+++ .++|++- .||+
T Consensus       137 ~~l~~~~~~~~~~~~~~~~~l~~-~~~~v~~t~I~~  171 (211)
T PHA02518        137 AFIISRAIKNTQLYREARKALAG-YGLPILRNGTTQ  171 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-CCCCCCCCCCCC
T ss_conf             88862358665699999999998-699810681988


No 71 
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.93  E-value=0.00083  Score=43.27  Aligned_cols=159  Identities=16%  Similarity=0.175  Sum_probs=78.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE--ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             29998358987479999999999840486120--1388738068999998557873114430014510347889998502
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI--QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv--~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
                      -|+..|. ||||||+..+-|++.++..+.|..  .+...+..-..-++......    .+..+.......|.....    
T Consensus         3 vi~lvGp-tGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l----~v~~~~~~~~~d~~~~~~----   73 (196)
T pfam00448         3 VILLVGL-QGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERL----GVPVFGSGTGSDPAAVAF----   73 (196)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHC----CCEEEECCCCCCHHHHHH----
T ss_conf             9999899-9998899999999999977992899975877688999999999863----981781487778789999----


Q ss_pred             CCHHHHHH-HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             35078864-223288799922765556676753089999974----7944897057765045799999999847990799
Q gi|254780487|r   82 IIDPATIN-PPDINDSIIIEGIGGLLVPLTTEYLFIDLIERW----QFPIILCARTSLGTINHSLLSLETLRNRNINIIG  156 (217)
Q Consensus        82 ~i~~~~~~-~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l----~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~G  156 (217)
                         ..... ..+++|+++|..+|-..   .......++....    ...++||.++..+.  +.+..+..+ ...+++-|
T Consensus        74 ---~~l~~~~~~~~D~IlIDTaGr~~---~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f-~~~~~~~~  144 (196)
T pfam00448        74 ---DAVEKAKAENYDVVLVDTAGRLQ---NDKNLMDELKKIKRVIAPDEVLLVLDATTGQ--NALNQAKAF-NEAVGITG  144 (196)
T ss_pred             ---HHHHHHHHCCCCEEEEECCCCCC---CCHHHHHHHHHHHHHCCCCCEEEEEECCCCC--CHHHHHHHH-HHHCCCCC
T ss_conf             ---99999884689999998999874---7677899999998522873028998567782--137899987-60047762


Q ss_pred             EEECCCC-CCCHHHH--HHHHCCCCEE
Q ss_conf             9976977-8005999--9986199899
Q gi|254780487|r  157 IAFIGDS-MPKVEET--IVKIGRIPHL  180 (217)
Q Consensus       157 iIlN~~~-~~~~~~~--le~~~~ipvL  180 (217)
                      +|+.+.- ....-..  +...+++|+.
T Consensus       145 ~I~TKlDet~~~G~~l~~~~~~~~Pi~  171 (196)
T pfam00448       145 VILTKLDGDAKGGAALSIAAETGKPIK  171 (196)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHCCCEE
T ss_conf             688840578875299989999896979


No 72 
>COG2403 Predicted GTPase [General function prediction only]
Probab=97.88  E-value=3.4e-05  Score=51.98  Aligned_cols=96  Identities=15%  Similarity=0.147  Sum_probs=57.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCC-------CCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             29998358987479999999999840486120138873-------80689999985578731144300145103478899
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYE-------ETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAA   76 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~-------~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (217)
                      .|-|+||+|++|||.||...+|.++..+|+|+..-.+.       +.-++++.........           ..+.|...
T Consensus       128 viaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~h-----------a~t~eere  196 (449)
T COG2403         128 VIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRH-----------AATDEERE  196 (449)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCHHHHHHHHCHHHCCCC-----------CCCHHHHH
T ss_conf             5999972366556788899999998669823799557023377310018977377652642-----------25566688


Q ss_pred             HHH-----------HCCCHHHHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf             985-----------0235078864223288799922765556676
Q gi|254780487|r   77 EID-----------GVIIDPATINPPDINDSIIIEGIGGLLVPLT  110 (217)
Q Consensus        77 ~~~-----------~~~i~~~~~~~~~~~D~viIEGagg~~~~~~  110 (217)
                      ..+           +........+..+.+|++|.||.+.-+-+.-
T Consensus       197 eye~~I~tg~~vlAGvdy~~vlke~~~~aD~IlwdGgnndfPfvk  241 (449)
T COG2403         197 EYESYIPTGGGVLAGVDYGTVLKEGEKEADFILWDGGNNDFPFVK  241 (449)
T ss_pred             HHHHCCCCCCCEEEEEEHHHHHHHHHHHCCEEEEECCCCCCCCCC
T ss_conf             787436435534652048999987764155899948887788525


No 73 
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).  This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=97.87  E-value=0.00022  Score=46.94  Aligned_cols=172  Identities=18%  Similarity=0.216  Sum_probs=95.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE-CCC-CCCCHHHHHHHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHH
Q ss_conf             299983589874799999999998404861201-388-738068999998557873114430014-51034788999850
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ-SGM-YEETDSKTIHRIGRIPKSHIIPEKWKL-RTPASPHLAAEIDG   80 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~-~G~-~~~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   80 (217)
                      -|++.|=+ |+||||.-+-|++.|+..|+|.+- +|- .+=.=..-++.|... .....+.+-.- .-|+|--..     
T Consensus        84 Vil~VGVN-G~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA~EQL~~Wa~R-~gv~vi~~~~gn~DPAaV~fD-----  156 (284)
T TIGR00064        84 VILFVGVN-GVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEVWAKR-LGVDVIKQKEGNADPAAVIFD-----  156 (284)
T ss_pred             EEEEEEEE-CCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHH-HCCEEEECCCCCCCCHHHHHH-----
T ss_conf             99998440-88601028899999987499089982752479999999998988-387554078898871789999-----


Q ss_pred             CCCHHHHHHHHHHCCEEEEECCCCCCCC--CCCCC-CHHHHHH-----HHCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             2350788642232887999227655566--76753-0899999-----74794489705776504579999999984799
Q gi|254780487|r   81 VIIDPATINPPDINDSIIIEGIGGLLVP--LTTEY-LFIDLIE-----RWQFPIILCARTSLGTINHSLLSLETLRNRNI  152 (217)
Q Consensus        81 ~~i~~~~~~~~~~~D~viIEGagg~~~~--~~~~~-~~~dla~-----~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~  152 (217)
                       -   -....++++|++||..||=+..-  +..++ -..++.+     .-...+|||.|+--|  +.++.-.+.|.+. +
T Consensus       157 -A---i~~Ak~~niDvvliDTAGRLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVlDAt~G--qna~~QA~~F~ea-v  229 (284)
T TIGR00064       157 -A---IQAAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVLDATTG--QNALEQAKVFNEA-V  229 (284)
T ss_pred             -H---HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHH--HHHHHHHHHHHHH-C
T ss_conf             -8---9999874997899734754546620399999999987321025787557542202220--3089999998654-0


Q ss_pred             EEEEEEECC-CCCCC--HHHHHHHHCCCCEE--EEECCCCCC
Q ss_conf             079999769-77800--59999986199899--994788888
Q gi|254780487|r  153 NIIGIAFIG-DSMPK--VEETIVKIGRIPHL--GRLPKIDPI  189 (217)
Q Consensus       153 ~i~GiIlN~-~~~~~--~~~~le~~~~ipvL--G~iP~~~~~  189 (217)
                      ++=|+|+-+ +....  ..=.+.+..++||+  |+=-..+++
T Consensus       230 ~ltGiiLTKLDg~AKGG~~l~i~~~l~~Pv~~~G~GE~~dDL  271 (284)
T TIGR00064       230 GLTGIILTKLDGTAKGGIILAIAYELKLPVKFIGVGEKIDDL  271 (284)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf             688589963468803789998899857976998548873320


No 74 
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=97.85  E-value=0.00016  Score=47.79  Aligned_cols=175  Identities=11%  Similarity=-0.044  Sum_probs=78.6

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC------------CCCCCCHHHHHHHHHCCCCC-CCC--CCCCC
Q ss_conf             9832999835898747999999999984048612013------------88738068999998557873-114--43001
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS------------GMYEETDSKTIHRIGRIPKS-HII--PEKWK   65 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~------------G~~~~~D~~~~~~~~~~~~~-~~~--~~~~~   65 (217)
                      |+ .|-|+.-.-|||||++|..|+.+|...|.|-..-            |...+..............- ...  ..+-.
T Consensus         1 Mk-iIai~s~KGGVGKTT~t~nLa~aLa~~G~rVLlID~Dpq~~l~~~~g~~~~~~~g~~~~~l~~~~~~~~~~~~~~gl   79 (244)
T pfam06564         1 MA-VLALQGVRGGVGTTSLTAALGWALQQLGESVLVIDASPDNLLRLHFNVDFDHSDGWARAELDGRPWRDAALRYTPGL   79 (244)
T ss_pred             CE-EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHEEECCCE
T ss_conf             92-99996699986199999999999997799589996898742102358886434414899875997777444526975


Q ss_pred             CCCC---HHHHHHHHHHHCC-----CHHHHH--HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             4510---3478899985023-----507886--42232887999227655566767530899999747944897057765
Q gi|254780487|r   66 LRTP---ASPHLAAEIDGVI-----IDPATI--NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLG  135 (217)
Q Consensus        66 ~~~~---~~~~~~~~~~~~~-----i~~~~~--~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g  135 (217)
                      ..-|   .+.......+...     ......  ....+||++||.-.-|+      +....+....-+ .|++++..+..
T Consensus        80 ~llP~g~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iliD~Pp~l------~~l~~~al~aad-~vLv~v~~d~~  152 (244)
T pfam06564        80 DLLPFGQLTGAERENLQQLQPDLGAWAQRLQLLKASGQYRWILLDLPQGF------SPLTRQLLELAD-VTLAVVHADAN  152 (244)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC------HHHHHHHHHHCC-CEEEEECCCHH
T ss_conf             89728997478999898654437999998764213578999999799996------899999999769-60899688858


Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-----HHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             0457999999998479907999976977800-----59999986199899994788888
Q gi|254780487|r  136 TINHSLLSLETLRNRNINIIGIAFIGDSMPK-----VEETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       136 ~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~-----~~~~le~~~~ipvLG~iP~~~~~  189 (217)
                      +  +..+    -++......++++|+.....     ..+.+++..+--+..+||+...+
T Consensus       153 s--~~~l----~~~~~~~~~~ilvn~~d~~~~l~~d~~~~~~~~~~~~l~~~I~rd~~l  205 (244)
T pfam06564       153 C--HIRL----HQQALPAGCHLLINDFRIGSQLQDDLYQLWLQSQRRLLPIVVHRDEAM  205 (244)
T ss_pred             H--HHHH----HHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHH
T ss_conf             9--9997----323344677488642455768999999999986087257550798829


No 75 
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.84  E-value=0.00028  Score=46.23  Aligned_cols=171  Identities=19%  Similarity=0.176  Sum_probs=88.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC-CC-CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             2999835898747999999999984048612013-88-738068999998557873114430014510347889998502
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS-GM-YEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~-G~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
                      .|++.|.+ |+|||+...-|++.|+..++|.+-+ |. .+-.=..-++.+.... ....+..-.-..|++-      -+.
T Consensus       141 Vil~vGVN-G~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~-gv~vI~~~~G~DpAaV------afD  212 (340)
T COG0552         141 VILFVGVN-GVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL-GVPVISGKEGADPAAV------AFD  212 (340)
T ss_pred             EEEEEECC-CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHH-CCEEECCCCCCCCHHH------HHH
T ss_conf             99999348-886371799999999978986999823347899999999999995-9927825999980899------999


Q ss_pred             CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHH---HHHH--CCC-----EEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf             3507886422328879992276555667675308999---9974--794-----48970577650457999999998479
Q gi|254780487|r   82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDL---IERW--QFP-----IILCARTSLGTINHSLLSLETLRNRN  151 (217)
Q Consensus        82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dl---a~~l--~~~-----vILV~~~~~g~i~~~~l~~~~~~~~g  151 (217)
                      -   --...++++|++||..||=+..-   ..++.++   .+-.  ..+     +++|.++-.|  +.++.-.+.+... 
T Consensus       213 A---i~~Akar~~DvvliDTAGRLhnk---~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~ea-  283 (340)
T COG0552         213 A---IQAAKARGIDVVLIDTAGRLHNK---KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEA-  283 (340)
T ss_pred             H---HHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC--HHHHHHHHHHHHH-
T ss_conf             9---99999769999999675544573---6689999999998464568998428999775647--5689999999875-


Q ss_pred             CEEEEEEECCCC-CCCH--HHHHHHHCCCCEE--EEECCCCCCCH
Q ss_conf             907999976977-8005--9999986199899--99478888888
Q gi|254780487|r  152 INIIGIAFIGDS-MPKV--EETIVKIGRIPHL--GRLPKIDPIDP  191 (217)
Q Consensus       152 ~~i~GiIlN~~~-~~~~--~~~le~~~~ipvL--G~iP~~~~~~~  191 (217)
                      +++-|+|+.+.- ....  .-.+.+.+++||+  |+=-..+++.+
T Consensus       284 v~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~  328 (340)
T COG0552         284 VGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRP  328 (340)
T ss_pred             CCCCEEEEEECCCCCCCCEEEEHHHHHCCCEEEEECCCCHHHCCC
T ss_conf             288669997024677762435088886999799857888443200


No 76 
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.82  E-value=9.2e-05  Score=49.26  Aligned_cols=96  Identities=19%  Similarity=0.138  Sum_probs=62.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      .++++|.+ |||||+++..|++.+...++|-..-.                                             
T Consensus         1 ~i~~~~~k-GvGKTT~a~~La~~la~~g~~Vl~vD---------------------------------------------   34 (99)
T cd01983           1 VIVVTGKG-GVGKTTLAANLAAALAKRGKRVLLID---------------------------------------------   34 (99)
T ss_pred             CEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEEC---------------------------------------------
T ss_conf             98985899-77689999999999998899699986---------------------------------------------


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHH---HHHHHCCCEEEEEEEC
Q ss_conf             0788642232887999227655566767530899999747944897057765045799999---9998479907999976
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSL---ETLRNRNINIIGIAFI  160 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~---~~~~~~g~~i~GiIlN  160 (217)
                                 |++++|+.++.......    ...+....-.++.+.......+.......   ......+....++++|
T Consensus        35 -----------d~iiiD~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~n   99 (99)
T cd01983          35 -----------DYVLIDTPPGLGLLVLL----CLLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             -----------CCEEECCCCCCCHHHHH----HHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             -----------71788589988846899----998787589589965984889999999999999841069815788539


No 77 
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68  E-value=0.003  Score=39.82  Aligned_cols=172  Identities=17%  Similarity=0.138  Sum_probs=80.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCC----CCCC--EECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             299983589874799999999998404----8612--0138873806899999855787311443001451034788999
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAY----YWKP--IQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAE   77 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~----~~KP--v~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (217)
                      -++..|. ||||||++.+-|++.+...    +.|.  |.+...+-.-..-++.....       .-..+....++.....
T Consensus       176 vi~lVGP-TGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~i-------l~vp~~v~~~~~dl~~  247 (388)
T PRK12723        176 IFILVGP-TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDI-------MGIPVKAIESFKDLKE  247 (388)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHH-------HCCCEEEECCHHHHHH
T ss_conf             8999899-8875787999999999986267677379998078758899999999999-------7880698578899999


Q ss_pred             HHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH---HH--CCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             8502350788642232887999227655566767530899999---74--794489705776504579999999984799
Q gi|254780487|r   78 IDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE---RW--QFPIILCARTSLGTINHSLLSLETLRNRNI  152 (217)
Q Consensus        78 ~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~---~l--~~~vILV~~~~~g~i~~~~l~~~~~~~~g~  152 (217)
                              +. ...+++|+++|..+|-...   ......++..   ..  +..+.||.++..+.-. ..-.+..+  ..+
T Consensus       248 --------~l-~~~~~~D~IlIDTAGrs~~---d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d-~~~i~~~f--~~~  312 (388)
T PRK12723        248 --------EI-TQSKDFDLVLIDTIGKSPK---DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD-IKEIFHQF--SPF  312 (388)
T ss_pred             --------HH-HHHCCCCEEEEECCCCCCC---CHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-HHHHHHHH--CCC
T ss_conf             --------99-9724999999958998856---899999999999741898459999879899999-99999984--279


Q ss_pred             EEEEEEECCC-CCCCHH--HHHHHHCCCCEEEE-----ECC-CCCCCHHHHHHHH
Q ss_conf             0799997697-780059--99998619989999-----478-8888887999999
Q gi|254780487|r  153 NIIGIAFIGD-SMPKVE--ETIVKIGRIPHLGR-----LPK-IDPIDPDVLHQKF  198 (217)
Q Consensus       153 ~i~GiIlN~~-~~~~~~--~~le~~~~ipvLG~-----iP~-~~~~~~~~l~~~~  198 (217)
                      ++.|+|+-+. .....-  =.+...++.|+.-+     +|. +...+++.+...+
T Consensus       313 ~~~~~I~TKlDEt~~~G~~l~~~~~~~~Pi~yit~GQ~VPdDie~a~p~~~~~~i  367 (388)
T PRK12723        313 SYKTVIFTKLDETTCVGNLISLIHEMRKEVSYVTDGQIVPHNISIAEPLTFIKKI  367 (388)
T ss_pred             CCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf             9984999832278986699999999888869993899683020338999999998


No 78 
>TIGR01287 nifH nitrogenase iron protein; InterPro: IPR005977    The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=97.61  E-value=0.0016  Score=41.46  Aligned_cols=176  Identities=17%  Similarity=0.184  Sum_probs=99.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCC-CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCC---------------
Q ss_conf             32999835898747999999999984048-61201388738068999998557873114430014---------------
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYY-WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKL---------------   66 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~-~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~---------------   66 (217)
                      |+|-|-|=+ |+||||++.-+++||...+ .|=...||++-.|......-.....+..++..-.-               
T Consensus         1 rqiAiYGKG-GIGKSTT~~N~~AAla~~gdkkVl~~GCDPKaDsTr~l~Gg~~~~TVLd~lre~G~ve~~~~e~v~~~Gf   79 (278)
T TIGR01287         1 RQIAIYGKG-GIGKSTTTQNIAAALAEMGDKKVLVVGCDPKADSTRLLLGGKAQPTVLDVLREKGAVEDVELEDVIKEGF   79 (278)
T ss_pred             CEEEEECCC-CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHEECC
T ss_conf             948886278-8670068889999998624955899723885202346517744554899998568711445102200168


Q ss_pred             --------CCCHHHHHHHHHHHCCCHHHHHH----HHH-HCCEEEEECCC-----CCCCCCCCCCCHHHHHHHHCCCEEE
Q ss_conf             --------51034788999850235078864----223-28879992276-----5556676753089999974794489
Q gi|254780487|r   67 --------RTPASPHLAAEIDGVIIDPATIN----PPD-INDSIIIEGIG-----GLLVPLTTEYLFIDLIERWQFPIIL  128 (217)
Q Consensus        67 --------~~~~~~~~~~~~~~~~i~~~~~~----~~~-~~D~viIEGag-----g~~~~~~~~~~~~dla~~l~~~vIL  128 (217)
                              =.|..-.-.|. .+.-....+.+    -.+ +-|+|+=.=.|     |...|+-  ...||       .|.+
T Consensus        80 ~girCVESGGPePGVGCAG-RGvItai~lL~~~g~y~dLdlD~V~YDVLGDVVCGGFAmP~R--~g~A~-------eiYi  149 (278)
T TIGR01287        80 GGIRCVESGGPEPGVGCAG-RGVITAIDLLEELGAYEDLDLDVVIYDVLGDVVCGGFAMPLR--EGLAQ-------EIYI  149 (278)
T ss_pred             CCEEEEEECCCCCCCCCCC-CHHEEEEHHHHHCCCCCCCCCCEEEEEECCCEEECCCCCHHH--CCCCC-------EEEE
T ss_conf             8318885076878952068-711201337753378731167768984236556566036100--58865-------4888


Q ss_pred             EECCCCCHHHHHH---HH-HHHHHHCCCEEEEEEECCCCCCCHHHHHHHH---CCCCEEEEECCCCCC
Q ss_conf             7057765045799---99-9999847990799997697780059999986---199899994788888
Q gi|254780487|r  129 CARTSLGTINHSL---LS-LETLRNRNINIIGIAFIGDSMPKVEETIVKI---GRIPHLGRLPKIDPI  189 (217)
Q Consensus       129 V~~~~~g~i~~~~---l~-~~~~~~~g~~i~GiIlN~~~~~~~~~~le~~---~~ipvLG~iP~~~~~  189 (217)
                      |+++..-++-+|-   -. .+|.++-|+++=|+|.|.-...+-.|.++++   .|-.+++.+|+-.-.
T Consensus       150 VtSge~MAlYAANNI~kGI~kYa~~GGv~LGG~IcN~R~~~~e~El~~~fA~~lgtq~i~~VPrs~~V  217 (278)
T TIGR01287       150 VTSGEMMALYAANNIAKGILKYAKSGGVRLGGIICNSRNVDDEKELVDEFAKKLGTQLIHFVPRSNIV  217 (278)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHHHHCCCCEECCEEECCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCC
T ss_conf             60340678999978877789997538822224787145762178999999987377067521788521


No 79 
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.55  E-value=0.00059  Score=44.22  Aligned_cols=157  Identities=15%  Similarity=0.098  Sum_probs=72.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             3299983589874799999999998404861-201388738068999998557873114430014510347889998502
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK-PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
                      +.++..|. ||||||++.+-|+..+....=| .|.   ....|.+.+.-.-.+. .+..+.-..+....+|....     
T Consensus       211 ~vvalVGP-TGVGKTTTiAKLAA~~~l~~~~~kV~---lIT~DtyRigA~eQLk-~Ya~ilgvp~~v~~~~~~l~-----  280 (412)
T PRK05703        211 GVVALVGP-TGVGKTTTLAKLAARYALEEGKDKVA---LITLDTYRIGAVEQLK-TYAKIMGIPVKVAYDPKELA-----  280 (412)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEE---EEEECCCCHHHHHHHH-HHHHHCCCEEEEECCHHHHH-----
T ss_conf             36999888-88756769999999999972998179---9983767777999999-99997197379847999999-----


Q ss_pred             CCHHHHHHHHHHCCEEEEECCC-CCCCCCCCCCCHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             3507886422328879992276-5556676753089999974----7944897057765045799999999847990799
Q gi|254780487|r   82 IIDPATINPPDINDSIIIEGIG-GLLVPLTTEYLFIDLIERW----QFPIILCARTSLGTINHSLLSLETLRNRNINIIG  156 (217)
Q Consensus        82 ~i~~~~~~~~~~~D~viIEGag-g~~~~~~~~~~~~dla~~l----~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~G  156 (217)
                         .+.. -..++|+|+|..+| +..+    .....++...+    ...++||.++....-+ ..-.++.+  ..+.+.+
T Consensus       281 ---~al~-~~~~~dlILIDTaG~s~~d----~~~~~eL~~~~~~~~~~~~~LVlsat~~~~d-l~~i~~~f--~~~~~~~  349 (412)
T PRK05703        281 ---KALE-QLANCDLILIDTAGRSQRD----PRLISELKALIENSKPIDVYLVLSATTKYRD-LKDIVKHF--SRLPLDG  349 (412)
T ss_pred             ---HHHH-HHCCCCEEEEECCCCCCCC----HHHHHHHHHHHHHCCCCCEEEEECCCCCHHH-HHHHHHHH--CCCCCCE
T ss_conf             ---9998-7158997999689889789----9999999999862488718999759899899-99999984--6799987


Q ss_pred             EEECCCC-CCCHHH--HHHHHCCCCEE
Q ss_conf             9976977-800599--99986199899
Q gi|254780487|r  157 IAFIGDS-MPKVEE--TIVKIGRIPHL  180 (217)
Q Consensus       157 iIlN~~~-~~~~~~--~le~~~~ipvL  180 (217)
                      +|+-+.- ....-.  .+...++.|+-
T Consensus       350 lI~TKlDEt~~~G~il~~~~~~~lpls  376 (412)
T PRK05703        350 LILTKLDETSSLGSILSLLIESGLPIS  376 (412)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHCCCEE
T ss_conf             999711289986299999999887969


No 80 
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=97.54  E-value=0.0027  Score=40.09  Aligned_cols=139  Identities=18%  Similarity=0.142  Sum_probs=67.7

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH-HHHHHHCC---CCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             9832999835898747999999999984048612013887380689-99998557---8731144300145103478899
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK-TIHRIGRI---PKSHIIPEKWKLRTPASPHLAA   76 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   76 (217)
                      |+ -|-++...-|+|||+++..|+.++...|.| |.   .-|.|++ ....+...   ..... +.+..+.....+    
T Consensus         1 M~-vi~~~~~KGG~GKtT~a~~la~~~~~~g~~-V~---liD~Dpq~s~~~W~~~a~~~~~~~-~~~~v~~~~~~~----   70 (231)
T pfam07015         1 MQ-LITFCSFKGGAGKTTALMGLCSALASDGKR-VA---LFEADENRPLTKWRENALRKGTWD-PACEIFNADELP----   70 (231)
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCE-EE---EEECCCCCCHHHHHHHHHHCCCCC-CCCCEECCCCHH----
T ss_conf             93-799961799865999999999999968995-99---996899868899999876468888-765222056601----


Q ss_pred             HHHHCCCHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCH--HHHHHHHHHHHH-----
Q ss_conf             98502350788642-2328879992276555667675308999997479448970577650--457999999998-----
Q gi|254780487|r   77 EIDGVIIDPATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGT--INHSLLSLETLR-----  148 (217)
Q Consensus        77 ~~~~~~i~~~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~--i~~~~l~~~~~~-----  148 (217)
                           .++...... .+++|++||++.|+..      ..+...+.  -++.+| .+.....  +..+.-++.+++     
T Consensus        71 -----~l~~~~~~~~~~~yD~VIIDtpg~~s------~~~~~AI~--~ADlVL-IP~qpSplD~~~a~~t~~~i~~~~~~  136 (231)
T pfam07015        71 -----LLEQAYEHAEGSGFDYALADTHGGSS------ELNNTIIA--SSDLLL-IPTMLTPLDIDEALATYRYVIELLLT  136 (231)
T ss_pred             -----HHHHHHHHHHHCCCCEEEECCCCCCC------HHHHHHHH--HCCEEE-ECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             -----58999998865799989983998575------89999999--789899-77899823399999999999999997


Q ss_pred             -HCCCEEEEEEECCCCC
Q ss_conf             -4799079999769778
Q gi|254780487|r  149 -NRNINIIGIAFIGDSM  164 (217)
Q Consensus       149 -~~g~~i~GiIlN~~~~  164 (217)
                       ++.++- .+++++.+.
T Consensus       137 ~~~~ip~-avl~tRv~~  152 (231)
T pfam07015       137 ENLAIPT-AILRQRVPV  152 (231)
T ss_pred             HCCCCCE-EEEEEECCC
T ss_conf             3789980-334551140


No 81 
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.51  E-value=0.004  Score=39.01  Aligned_cols=156  Identities=19%  Similarity=0.127  Sum_probs=73.1

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH-HHHHHHCCCCCCC--CCCCCCCCCCHHHHHHHH
Q ss_conf             9832999835898747999999999984048612013887380689-9999855787311--443001451034788999
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK-TIHRIGRIPKSHI--IPEKWKLRTPASPHLAAE   77 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   77 (217)
                      |+ -|-++...-|+|||+++..|+..+...|.+ |.   .-|.|++ ....+........  .+.+..+.....+.+   
T Consensus         1 M~-vi~~~~~KGG~GKtT~a~~la~~~~~~g~~-v~---~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l---   72 (231)
T PRK13849          1 MK-LLTFCSFKGGAGKTTALMGLCAALASDGKR-VA---LFEADENRPLTRWKENALRSNTWDPACEVYAADELPLL---   72 (231)
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCE-EE---EEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHH---
T ss_conf             93-799961899876999999999999978995-99---99689986889999876525898877523405652578---


Q ss_pred             HHHCCCHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC--HHHHHHHHHHHHH------
Q ss_conf             8502350788642-232887999227655566767530899999747944897057765--0457999999998------
Q gi|254780487|r   78 IDGVIIDPATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLG--TINHSLLSLETLR------  148 (217)
Q Consensus        78 ~~~~~i~~~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g--~i~~~~l~~~~~~------  148 (217)
                            +...... .+++|++||++.|+.-      ..+.....  -++.+| .+....  -+..+.-++..++      
T Consensus        73 ------~~~~e~~~~~~~D~VIIDtpg~~s------~~~~~Ai~--~ADLVL-IP~qPSp~D~~~a~~tv~~i~~~~~~~  137 (231)
T PRK13849         73 ------EAAYEDAELQGFDYALADTHGGSS------ELNNTIIA--SSNLLL-IPTMLTPLDIDEALSTYRYVIELLLSE  137 (231)
T ss_pred             ------HHHHHHHHHCCCCEEEECCCCCCC------HHHHHHHH--HCCEEE-ECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ------999988753699889981899775------89999999--789899-779998667999999999999999972


Q ss_pred             HCCCEEEEEEECCCCCCC---H-HHHHHHHCCCCEE
Q ss_conf             479907999976977800---5-9999986199899
Q gi|254780487|r  149 NRNINIIGIAFIGDSMPK---V-EETIVKIGRIPHL  180 (217)
Q Consensus       149 ~~g~~i~GiIlN~~~~~~---~-~~~le~~~~ipvL  180 (217)
                      ++.++. .+++|+.+...   . ....+.+.++|+|
T Consensus       138 ~~~ip~-~vlltRv~a~~~t~~~~~i~~~le~lPvl  172 (231)
T PRK13849        138 NLAIPT-AILRQRVPVGRLTTSQRAMSDMLESLPVV  172 (231)
T ss_pred             CCCCCE-EEEEEECCHHHHCHHHHHHHHHHHCCCCC
T ss_conf             878865-66654050454068899999999629955


No 82 
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129   Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK  resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=97.51  E-value=0.00057  Score=44.31  Aligned_cols=119  Identities=16%  Similarity=0.170  Sum_probs=68.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE----------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf             3299983589874799999999998404861201----------388738068999998557873114430014510347
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ----------SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASP   72 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~----------~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (217)
                      .++=|||+ +|+||||..-.|...|+..|+| |+          ||.--=.|-..++.+.....-..+|.-|.=..|.+.
T Consensus        39 ~~vG~TG~-PGaGKSTl~~~l~~~lrRrG~~-VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~FIRs~ptrG  116 (333)
T TIGR00750        39 HVVGITGV-PGAGKSTLVEKLIMELRRRGLK-VAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGVFIRSMPTRG  116 (333)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf             78766468-8885777999998999765976-899988797597551454568877544222233228985676776667


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf             88999850235078864223288799922765556676753089999974794489705
Q gi|254780487|r   73 HLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCAR  131 (217)
Q Consensus        73 ~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~  131 (217)
                      ++ -..-....+.-...-+.+||++|||.+|=       +-+=.|+++.-+.-|++-..
T Consensus       117 ~l-GGls~at~~~~~lldA~G~DVI~vETVGV-------GQSEVdi~~~aDT~v~v~~p  167 (333)
T TIGR00750       117 SL-GGLSKATRELVKLLDAAGYDVILVETVGV-------GQSEVDIINMADTFVVVTIP  167 (333)
T ss_pred             CH-HHHHHHHHHHHHHHHHCCCCEEEEEEECC-------CHHHHHHHHHHCEEEEEECC
T ss_conf             52-57879999999999863898799984157-------52487887341505898548


No 83 
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.48  E-value=0.00053  Score=44.51  Aligned_cols=157  Identities=20%  Similarity=0.167  Sum_probs=82.7

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC------CC---CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf             9832999835898747999999999984048612013------88---73806899999855787311443001451034
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS------GM---YEETDSKTIHRIGRIPKSHIIPEKWKLRTPAS   71 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~------G~---~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (217)
                      |..-+=|+|. +|+|||+....|++.|+..|+| |++      ++   .+..|...++++.....-...+..+.+.....
T Consensus         1 m~Pii~ivG~-s~SGKTTLi~kli~~l~~~G~r-V~~IKH~~H~f~~D~pGkDS~r~r~AGA~~v~v~s~~r~al~~e~~   78 (170)
T PRK10751          1 MIPLLAIAAW-SGTGKTTLLKKLIPALCARGIR-PGLIKHTHHDMDVDKPGKDSYELRKAGAAQTLVASQQRWALMTETP   78 (170)
T ss_pred             CCCEEEEEEC-CCCCHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCEEEEEECC
T ss_conf             9877999946-9999999999999999987984-9999457778889999841099997326646887543212444336


Q ss_pred             HHHHHHHHHCCCHHHHHHHH-HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             78899985023507886422-32887999227655566767530899999747944897057765045799999999847
Q gi|254780487|r   72 PHLAAEIDGVIIDPATINPP-DINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNR  150 (217)
Q Consensus        72 ~~~~~~~~~~~i~~~~~~~~-~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~  150 (217)
                      .     .+.........+.. ...|++||||--.                 ...|=|.|.+...|.--      ..+...
T Consensus        79 ~-----~~~~~l~~l~~~~~~~~~DlvlvEGfK~-----------------~~~pKIev~R~~~~~~~------~~~~~d  130 (170)
T PRK10751         79 E-----QEELDLHYLASRMDASKLDLILVEGFKH-----------------EPIAKIVLFRDGAGHRP------EELVID  130 (170)
T ss_pred             C-----CCCCCHHHHHHHCCCCCCCEEEEECCCC-----------------CCCCEEEEEECCCCCCH------HHCCCC
T ss_conf             6-----6899999999861767777899833567-----------------89877999853359974------454899


Q ss_pred             CCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             990799997697780059999986199899994788888887999999971339
Q gi|254780487|r  151 NINIIGIAFIGDSMPKVEETIVKIGRIPHLGRLPKIDPIDPDVLHQKFQEHFTQ  204 (217)
Q Consensus       151 g~~i~GiIlN~~~~~~~~~~le~~~~ipvLG~iP~~~~~~~~~l~~~~~~~~~~  204 (217)
                       -++.+++-+...          -++      +|.++--+.+.++++.-+++.+
T Consensus       131 -~~iiAvasD~~~----------~~~------~P~f~lnd~~~Ia~fIl~~l~~  167 (170)
T PRK10751        131 -EHVIAVASDVPL----------NLD------VPLLDINDVEQIADFIVEWLQK  167 (170)
T ss_pred             -CCEEEEECCCCC----------CCC------CCCCCCCCHHHHHHHHHHHHHH
T ss_conf             -988999848987----------779------7773777999999999999997


No 84 
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.48  E-value=0.00049  Score=44.69  Aligned_cols=126  Identities=21%  Similarity=0.206  Sum_probs=68.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC------CC---CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             32999835898747999999999984048612013------88---7380689999985578731144300145103478
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS------GM---YEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPH   73 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~------G~---~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (217)
                      |.+=|.|- +|+|||+....|++.|+..|+| |++      +.   .+..|...++++.....-...+..+.+.......
T Consensus         2 kii~ivG~-snSGKTTLi~kli~~l~~~G~~-V~~iKH~~H~f~~D~~GkDS~r~~~AGA~~v~v~s~~~~~l~~~~~~~   79 (159)
T cd03116           2 KVIGFVGY-SGSGKTTLLEKLIPALSARGLR-VAVIKHDHHDFDIDTPGKDSYRHREAGAEEVLVSSPRRWALIRELRDE   79 (159)
T ss_pred             EEEEEEEC-CCCCHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCEEEEEEECCCC
T ss_conf             29999967-9999999999999999977985-989973476777778984417767529737999756718877744688


Q ss_pred             HHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf             89998502350788642232887999227655566767530899999747944897057765045799999999847990
Q gi|254780487|r   74 LAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNIN  153 (217)
Q Consensus        74 ~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~  153 (217)
                             ..........-.++|++||||--                 ....|=|.|.+...+.        +.+....-+
T Consensus        80 -------~~~~~~~~~~~~~~DlvlvEG~K-----------------~~~~pKIev~R~~~~~--------~~l~~~~~~  127 (159)
T cd03116          80 -------PEPDLLLLLRLLDVDLVLVEGFK-----------------EEPIPKIEVHRPELGK--------PLLLPEDPN  127 (159)
T ss_pred             -------CCCCHHHHHHCCCCCEEEEECCC-----------------CCCCCEEEEEECCCCC--------CCCCCCCCC
T ss_conf             -------88729999626788899983466-----------------7888779998255798--------665789998


Q ss_pred             EEEEEECCC
Q ss_conf             799997697
Q gi|254780487|r  154 IIGIAFIGD  162 (217)
Q Consensus       154 i~GiIlN~~  162 (217)
                      +.+++-+..
T Consensus       128 i~Av~td~~  136 (159)
T cd03116         128 VVAVATDEP  136 (159)
T ss_pred             EEEEEECCC
T ss_conf             899997886


No 85 
>PRK10037 cell division protein; Provisional
Probab=97.42  E-value=0.0046  Score=38.63  Aligned_cols=32  Identities=28%  Similarity=0.272  Sum_probs=29.0

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             983299983589874799999999998404861
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      |+ .|.|+|..-|||||++++.|+.+|...+-+
T Consensus         1 M~-iial~s~kGGVGkTTltAnLA~aL~~~g~~   32 (250)
T PRK10037          1 MA-ILGLQGVRGGVGTTSITAALAWSLQMLGEN   32 (250)
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             93-799960788876899999999999977991


No 86 
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435   The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , .    In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) .   The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=97.37  E-value=0.00031  Score=45.92  Aligned_cols=93  Identities=26%  Similarity=0.277  Sum_probs=53.2

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE---CC--CC------CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             99983589874799999999998404861201---38--87------380689999985578731144300145103478
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQ---SG--MY------EETDSKTIHRIGRIPKSHIIPEKWKLRTPASPH   73 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~---~G--~~------~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (217)
                      |=|+|- +|+|||++...|++.|+..||++..   .|  ..      ...|...++.......-......+.+.+.... 
T Consensus         2 ~~i~G~-k~SGKTtL~~~l~~~L~~~Gy~V~~IKH~ghG~H~~~~d~~GkDs~rhr~AGA~~v~~~~~~~~~~~~~~~g-   79 (165)
T TIGR00176         2 LQIVGY-KNSGKTTLIERLVKALKARGYRVATIKHDGHGHHDFDIDKEGKDSYRHREAGADAVIVASSERYAVMTETQG-   79 (165)
T ss_pred             EEEEEE-CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECCCCCCCHHHHHCCCCEEEEECCCEEEEEEECCC-
T ss_conf             378962-588678999999999970799508986089888756527998731332104362788667906899875289-


Q ss_pred             HHHHHHHCCCHHHHHHHHH-HCCEEEEECCC
Q ss_conf             8999850235078864223-28879992276
Q gi|254780487|r   74 LAAEIDGVIIDPATINPPD-INDSIIIEGIG  103 (217)
Q Consensus        74 ~~~~~~~~~i~~~~~~~~~-~~D~viIEGag  103 (217)
                          .+.........++.. .+|++||||==
T Consensus        80 ----~~e~~L~~~l~~~~~~~~D~~LvEGfK  106 (165)
T TIGR00176        80 ----EEELDLEALLKRLADRELDIILVEGFK  106 (165)
T ss_pred             ----CCCCCHHHHHHHCCCCCCCEEEEECCC
T ss_conf             ----998787999864285526878985245


No 87 
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.35  E-value=0.0076  Score=37.26  Aligned_cols=42  Identities=10%  Similarity=-0.064  Sum_probs=32.6

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             794489705776504579999999984799079999769778
Q gi|254780487|r  123 QFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSM  164 (217)
Q Consensus       123 ~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~  164 (217)
                      +.+..+|.....-++..+.-+++.+...++++.++|+|+...
T Consensus       207 ~T~~~lV~~pe~l~l~e~~ra~~~l~~~~i~v~~vi~n~~~p  248 (322)
T COG0003         207 GTSFRLVSIPEKLSLYETKRAVERLSLYGIPVDAVIVNKILP  248 (322)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHEEEEECCCC
T ss_conf             883799966101155889999999987598643155631366


No 88 
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.35  E-value=0.0037  Score=39.23  Aligned_cols=156  Identities=19%  Similarity=0.160  Sum_probs=73.4

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCC-CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             2999835898747999999999984048-612013887380689999985578731144300145103478899985023
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYY-WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI   82 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~-~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (217)
                      -+...|. ||||||++.+-|++-+...+ -|-|+   .-..|.+.+.-.-.+. .+..+.-..+.-..+|....      
T Consensus       205 vi~LVGP-TGVGKTTTlAKLAar~~~~~~~~kVa---iITtDtYRIGA~EQLk-~Ya~im~vp~~vv~~~~el~------  273 (407)
T COG1419         205 VIALVGP-TGVGKTTTLAKLAARYVMLKKKKKVA---IITTDTYRIGAVEQLK-TYADIMGVPLEVVYSPKELA------  273 (407)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCCEE---EEEECCCHHHHHHHHH-HHHHHHCCCEEEECCHHHHH------
T ss_conf             7999899-88758879999999997532576068---9971441152899999-99998699559963999999------


Q ss_pred             CHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH----HCCCEEEEECCCCCHHHHHHH-HHHHHHHCCCEEEEE
Q ss_conf             507886422328879992276555667675308999997----479448970577650457999-999998479907999
Q gi|254780487|r   83 IDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIER----WQFPIILCARTSLGTINHSLL-SLETLRNRNINIIGI  157 (217)
Q Consensus        83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~----l~~~vILV~~~~~g~i~~~~l-~~~~~~~~g~~i~Gi  157 (217)
                         .....-+++|+++|..+|--.   .......++...    ..+.+.||.++..-  ...+- .++  +.+-+++.|+
T Consensus       274 ---~ai~~l~~~d~ILVDTaGrs~---~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~--~f~~~~i~~~  343 (407)
T COG1419         274 ---EAIEALRDCDVILVDTAGRSQ---YDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIK--QFSLFPIDGL  343 (407)
T ss_pred             ---HHHHHHHCCCEEEEECCCCCC---CCHHHHHHHHHHHHCCCCCEEEEEEECCCC--HHHHHHHHH--HHCCCCCCEE
T ss_conf             ---999985318889996899883---378999999999703566217999845764--688999999--7245886616


Q ss_pred             EECCC-CCCCHHH--HHHHHCCCCEE
Q ss_conf             97697-7800599--99986199899
Q gi|254780487|r  158 AFIGD-SMPKVEE--TIVKIGRIPHL  180 (217)
Q Consensus       158 IlN~~-~~~~~~~--~le~~~~ipvL  180 (217)
                      |+-+- .....-.  .+-..++.||.
T Consensus       344 I~TKlDET~s~G~~~s~~~e~~~PV~  369 (407)
T COG1419         344 IFTKLDETTSLGNLFSLMYETRLPVS  369 (407)
T ss_pred             EEECCCCCCCHHHHHHHHHHHCCCEE
T ss_conf             89713356763389999999689749


No 89 
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33  E-value=0.005  Score=38.40  Aligned_cols=182  Identities=14%  Similarity=0.055  Sum_probs=86.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      -++..|- ||||||++.+-|+..+...+=|-|+   ....|.+.+.-.-.+.. +..+.-..+.....+...        
T Consensus       225 vi~lVGP-TGVGKTTTiAKLAA~~~l~~~kkVa---LIT~DTYRIgAvEQLkt-Ya~Il~iPv~vv~~~~el--------  291 (432)
T PRK12724        225 VVFFVGP-TGSGKTTSIAKLAAKYFLHMGKSVS---LYTTDNYRIAAIEQLKR-YADTMGMPFYPVKDIKKF--------  291 (432)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHHCCCEEE---EEECCCCCHHHHHHHHH-HHHHHCCCEEEEECHHHH--------
T ss_conf             9999899-9988899999999999997499279---99526653779999999-999859945995189999--------


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH-------CCCEEEEECCCCCHHHHHHH-HHHHHHHCCCEEE
Q ss_conf             078864223288799922765556676753089999974-------79448970577650457999-9999984799079
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERW-------QFPIILCARTSLGTINHSLL-SLETLRNRNINII  155 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l-------~~~vILV~~~~~g~i~~~~l-~~~~~~~~g~~i~  155 (217)
                      ..++.+  .++|+++|..||--..   ......++...+       ...+.||.++...  +..+. .++.  ...+++.
T Consensus       292 ~~al~~--~~~DlILIDTAGrS~r---d~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk--~~dl~~ii~~--f~~l~~~  362 (432)
T PRK12724        292 KETLAR--DGSELILIDTAGYSHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKA--YESLNYR  362 (432)
T ss_pred             HHHHHH--CCCCEEEEECCCCCCC---CHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--HHHHHHHHHH--HCCCCCC
T ss_conf             999985--6999999929998978---99999999999986366788517999978899--8999999998--4269998


Q ss_pred             EEEECCC-CCCCH--HHHHHHHCCCCEEEEE------CC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9997697-78005--9999986199899994------78-88888879999999713399999999
Q gi|254780487|r  156 GIAFIGD-SMPKV--EETIVKIGRIPHLGRL------PK-IDPIDPDVLHQKFQEHFTQSLLQKYF  211 (217)
Q Consensus       156 GiIlN~~-~~~~~--~~~le~~~~ipvLG~i------P~-~~~~~~~~l~~~~~~~~~~~~l~~~~  211 (217)
                      ++|+-+- .....  .=.+...++.|+- ++      |. +...+++.+++.+   +.+..|++.-
T Consensus       363 ~lIfTKLDET~s~G~ilni~~~~~~Pis-YiT~GQ~VPdDI~~A~~~~la~li---lg~~~~~~~~  424 (432)
T PRK12724        363 RILLTKLDEADFLGSFLELADTYSKSFT-YLSVGQEVPFDILNATKNLMAECV---VFPEKIAELR  424 (432)
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHCCCEE-EEECCCCCCCCHHHCCHHHHHHHH---HHHHHHHHHH
T ss_conf             4999712277986699999999889869-980899797173335999999997---6679899875


No 90 
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.24  E-value=0.002  Score=40.93  Aligned_cols=154  Identities=14%  Similarity=0.074  Sum_probs=70.5

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCC-CCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99983589874799999999998404-86120138873806899999855787311443001451034788999850235
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAY-YWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~-~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      +...|- ||||||++.+-|+..+.-. +-+.|+   ....|.+.+.-.-.+. .+..+.-..+....++...        
T Consensus       179 ~alVGP-TGVGKTTTiAKLAAr~~l~~g~~kVa---LIT~DTYRIgAvEQLk-tYa~IlgvPv~vv~~~~eL--------  245 (404)
T PRK06995        179 FALVGP-TGVGKTTTTAKLAARCVMRHGASKVA---LLTTDSYRIGGHEQLR-IYGKILGVPVHAVKDAADL--------  245 (404)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHHHCCCCEE---EEECCCCCHHHHHHHH-HHHHHCCCEEEEECCHHHH--------
T ss_conf             898668-88763758999999999983898379---9976875478999999-9998759559995999999--------


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH-----HCCCEEEEECCCCCHHHHHH-HHHHHHHHCCCEEEEE
Q ss_conf             07886422328879992276555667675308999997-----47944897057765045799-9999998479907999
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIER-----WQFPIILCARTSLGTINHSL-LSLETLRNRNINIIGI  157 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~-----l~~~vILV~~~~~g~i~~~~-l~~~~~~~~g~~i~Gi  157 (217)
                      ..+..+ -+++|+|+|..+|-  ++  .+....+....     ....++||.++...  ...+ -.+..  ...+++.|+
T Consensus       246 ~~aL~~-l~~~dlILIDTaGr--s~--rD~~~~e~l~~l~~~~~~~~~~LVLsat~~--~~dl~~i~~~--f~~~~~~~~  316 (404)
T PRK06995        246 RLALAE-LRNKHIVLIDTVGM--SQ--RDRMVSEQIAMLHGAGAPVQRLLLLNATSH--GDTLNEVVQA--YRGPGLAGC  316 (404)
T ss_pred             HHHHHH-HCCCCEEEEECCCC--CC--CCHHHHHHHHHHHHCCCCCEEEEEECCCCC--HHHHHHHHHH--HCCCCCCEE
T ss_conf             999997-08999999809998--97--688899999999735788528999779899--9999999998--446999839


Q ss_pred             EECCCCC-CCHHHH--HHHHCCCCEE
Q ss_conf             9769778-005999--9986199899
Q gi|254780487|r  158 AFIGDSM-PKVEET--IVKIGRIPHL  180 (217)
Q Consensus       158 IlN~~~~-~~~~~~--le~~~~ipvL  180 (217)
                      |+-+.-. ...-..  +-..++.|+-
T Consensus       317 I~TKLDEt~~~G~iln~~~~~~lPls  342 (404)
T PRK06995        317 ILTKLDEAASLGGALDTVIRHKLPLH  342 (404)
T ss_pred             EEECCCCCCCHHHHHHHHHHHCCCEE
T ss_conf             98304067972399999999789859


No 91 
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.06  E-value=0.001  Score=42.66  Aligned_cols=94  Identities=21%  Similarity=0.182  Sum_probs=51.0

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE---CCC-----CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf             983299983589874799999999998404861201---388-----738068999998557873114430014510347
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ---SGM-----YEETDSKTIHRIGRIPKSHIIPEKWKLRTPASP   72 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~---~G~-----~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (217)
                      |.+-+=|+|. +|+|||++.--|++.|+..|++.-.   ++.     ....|...+++......-.....-+.+......
T Consensus         1 m~~Il~ivG~-k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~aGa~~~v~~s~~~~~~~~~~~~   79 (161)
T COG1763           1 MMKILGIVGY-KNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRKAGADQVVVASDHRTALMTRTPD   79 (161)
T ss_pred             CCCEEEEEEC-CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEEEEEECCC
T ss_conf             9728999962-799734289999999975793799998658777778898766100035663499955978999982687


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHCCEEEEECCC
Q ss_conf             8899985023507886422328879992276
Q gi|254780487|r   73 HLAAEIDGVIIDPATINPPDINDSIIIEGIG  103 (217)
Q Consensus        73 ~~~~~~~~~~i~~~~~~~~~~~D~viIEGag  103 (217)
                              ...+..+..+....|++||||=-
T Consensus        80 --------~~L~~vl~~l~~~~D~vLVEGFK  102 (161)
T COG1763          80 --------RDLDAVLSRLDPLLDLVLVEGFK  102 (161)
T ss_pred             --------CCHHHHHHHCCCCCCEEEEECCC
T ss_conf             --------68999997427556799995256


No 92 
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.04  E-value=0.0043  Score=38.80  Aligned_cols=35  Identities=29%  Similarity=0.194  Sum_probs=30.4

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCCE
Q ss_conf             9832999835898747999999999984-0486120
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALN-AYYWKPI   35 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~-~~~~KPv   35 (217)
                      |++.|.|+...-|||||+++.-|+.+|. .++.|..
T Consensus         1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVL   36 (259)
T COG1192           1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVL   36 (259)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             976999985788851999999999999983899789


No 93 
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.03  E-value=0.0016  Score=41.51  Aligned_cols=32  Identities=28%  Similarity=0.483  Sum_probs=28.0

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             983299983589874799999999998404861
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      |+++|+|||- +|||||++..-++..|+..+||
T Consensus         4 ~~mki~ITG~-PGvGKtTl~~ki~e~L~~~g~k   35 (179)
T COG1618           4 MAMKIFITGR-PGVGKTTLVLKIAEKLREKGYK   35 (179)
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCE
T ss_conf             5459998679-9845899999999999855966


No 94 
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91  E-value=0.013  Score=35.85  Aligned_cols=156  Identities=18%  Similarity=0.206  Sum_probs=70.7

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf             99983589874799999999998404861201388738068999998557873114430014510347889998502350
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIID   84 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   84 (217)
                      |-..|- ||||||++.+-|+..+.... |-|+   ....|...+...-.+.. +..+.-..+....++...        .
T Consensus       244 IALVGP-TGVGKTTTIAKLAArf~~~~-KkVA---LITtDTYRIGAVEQLKT-YAeIMgVPV~VV~dp~eL--------~  309 (436)
T PRK11889        244 IALIGP-TGVGKTTTLAKMAWQFHGKK-KTVG---FITTDHSRIGTVQQLQD-YVKTIGFEVIAVRDEAAM--------T  309 (436)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHHCCC-CEEE---EEECCCCHHHHHHHHHH-HHHHHCCCEEEECCHHHH--------H
T ss_conf             999899-99888999999999986169-8089---99806634769999999-999849943996888999--------9


Q ss_pred             HHHHHHH--HHCCEEEEECCCCCCCCCCCCCCHHHHHHHH---C-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             7886422--3288799922765556676753089999974---7-94489705776504579999999984799079999
Q gi|254780487|r   85 PATINPP--DINDSIIIEGIGGLLVPLTTEYLFIDLIERW---Q-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIA  158 (217)
Q Consensus        85 ~~~~~~~--~~~D~viIEGagg~~~~~~~~~~~~dla~~l---~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiI  158 (217)
                      .+...+.  .++|+++|..+|-  ++ .......++...+   . ..+.||.++....- +..-.+.  +...+++-|+|
T Consensus       310 ~AL~~lkdka~~DLILIDTAGR--S~-RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~-DL~eIi~--rF~~l~idglI  383 (436)
T PRK11889        310 RALTYFKEEARVDYILIDTAGK--NY-RASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIIT--NFKDIHIDGIV  383 (436)
T ss_pred             HHHHHHHHCCCCCEEEEECCCC--CC-CCHHHHHHHHHHHHHCCCCEEEEEEECCCCHH-HHHHHHH--HHCCCCCCEEE
T ss_conf             9999876336888899929898--84-68999999999985127771699997889989-9999999--72579988289


Q ss_pred             ECCCC-CCCHHH--HHHHHCCCCEE
Q ss_conf             76977-800599--99986199899
Q gi|254780487|r  159 FIGDS-MPKVEE--TIVKIGRIPHL  180 (217)
Q Consensus       159 lN~~~-~~~~~~--~le~~~~ipvL  180 (217)
                      +-+.- ....-.  .+...+++|+.
T Consensus       384 fTKLDET~SlG~ILNv~~~s~LPIs  408 (436)
T PRK11889        384 FTKFDETASSGELLKIPAVSSAPIV  408 (436)
T ss_pred             EEECCCCCCCHHHHHHHHHHCCCEE
T ss_conf             9713256870378889988399879


No 95 
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.91  E-value=0.0038  Score=39.16  Aligned_cols=97  Identities=23%  Similarity=0.181  Sum_probs=58.4

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf             99983589874799999999998404861201388738068999998557873114430014510347889998502350
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIID   84 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   84 (217)
                      |-++...-|||||+++..|+..+...++|-.-    -|.|++                                      
T Consensus         2 i~~~n~KGGvGKtt~~~~la~~~a~~g~~vl~----iD~DpQ--------------------------------------   39 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLL----IDLDPQ--------------------------------------   39 (104)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE----EECCCC--------------------------------------
T ss_conf             99973899876899999999999977992999----977988--------------------------------------


Q ss_pred             HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEE-EECCCCCHHHHHHHHHH-----HHHHCCCEEEEEE
Q ss_conf             78864223288799922765556676753089999974794489-70577650457999999-----9984799079999
Q gi|254780487|r   85 PATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIIL-CARTSLGTINHSLLSLE-----TLRNRNINIIGIA  158 (217)
Q Consensus        85 ~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vIL-V~~~~~g~i~~~~l~~~-----~~~~~g~~i~GiI  158 (217)
                               +|+++|...++...        .......-++.++ ......-++....-..+     ...+......|++
T Consensus        40 ---------yD~iiIDtpp~~~~--------~~~~al~~aD~viiP~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  102 (104)
T cd02042          40 ---------YDYIIIDTPPSLGL--------LTRNALAAADLVLIPVQPSPLDLDGLEKLLETLILEDRLNPDLDILGIL  102 (104)
T ss_pred             ---------CCEEEEECCCCCCH--------HHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             ---------88899979499989--------9999999789999983698899999999999999999769998899998


Q ss_pred             EC
Q ss_conf             76
Q gi|254780487|r  159 FI  160 (217)
Q Consensus       159 lN  160 (217)
                      +|
T Consensus       103 ~~  104 (104)
T cd02042         103 PT  104 (104)
T ss_pred             EC
T ss_conf             09


No 96 
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=96.88  E-value=0.0057  Score=38.01  Aligned_cols=97  Identities=18%  Similarity=0.135  Sum_probs=50.7

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHH------HHHHH--HHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             99983589874799999999998404861201388738068------99999--85578731144300145103478899
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDS------KTIHR--IGRIPKSHIIPEKWKLRTPASPHLAA   76 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (217)
                      |-|+--.-|||||+++.-|+.+|...|.| |..   .|-|+      .++..  ..........+.|....-+.......
T Consensus         3 IaVaNqKGGvGKTTtavnLA~aLA~~G~r-Vll---IDlDpqq~slt~~l~nr~~~~~~~~~~l~~P~~~~l~~~~~~~~   78 (261)
T pfam09140         3 IVVGNEKGGSGKSTTAVHVAVALLYLGAR-VAT---IDLDLRQRTLTRYIENRAATAERTGLDLPVPKHLCLPDDVSEVF   78 (261)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCC-EEE---EECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             99971789872999999999999988997-899---97999998512344303556551386534665344550677761


Q ss_pred             H---HHHCCCHHHHHHHHHHCCEEEEECCCCC
Q ss_conf             9---8502350788642232887999227655
Q gi|254780487|r   77 E---IDGVIIDPATINPPDINDSIIIEGIGGL  105 (217)
Q Consensus        77 ~---~~~~~i~~~~~~~~~~~D~viIEGagg~  105 (217)
                      .   .+......+...+..+||++||...+++
T Consensus        79 ~~~~~~~~~L~~al~~l~~~yDfIlIDcPPsl  110 (261)
T pfam09140        79 DGESADDARLEEAVADLEQDADFIVIDTPGSD  110 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             34557899999999998757999999699857


No 97 
>PRK05380 pyrG CTP synthetase; Validated
Probab=96.67  E-value=0.052  Score=32.01  Aligned_cols=181  Identities=19%  Similarity=0.124  Sum_probs=85.4

Q ss_pred             CCCEEEEECC-CCCCCHHHHHHHHHHHHHCCCCC------------------CEECCC--------CCCCHHHHHHHHHC
Q ss_conf             9832999835-89874799999999998404861------------------201388--------73806899999855
Q gi|254780487|r    1 MKLRLVIVGT-DTSVGKTIFASALVHALNAYYWK------------------PIQSGM--------YEETDSKTIHRIGR   53 (217)
Q Consensus         1 M~~~i~I~GT-~t~vGKT~vs~~L~~~l~~~~~K------------------Pv~~G~--------~~~~D~~~~~~~~~   53 (217)
                      |+|=|||||- -|+.||-.+++.|.+.|+.+|+|                  |+|-|.        ..|-|-....+...
T Consensus         1 ~tKyIfVTGGVvS~lGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GTMsP~qHGEVfVt~DG~EtDLDLGhYERFl~   80 (534)
T PRK05380          1 MTKYIFVTGGVVSSLGKGITAASLGALLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLD   80 (534)
T ss_pred             CCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCC
T ss_conf             96099996983015740899999999999789658898414652258998896657537888887401466751354348


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHC--------------CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH----
Q ss_conf             7873114430014510347889998502--------------3507886422328879992276555667675308----
Q gi|254780487|r   54 IPKSHIIPEKWKLRTPASPHLAAEIDGV--------------IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLF----  115 (217)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~----  115 (217)
                      ...+...  -.+--.-+..-+..+..+.              .|.....+.++++|++|||--|-+.+  .+..-.    
T Consensus        81 ~~l~~~~--niTtGkiy~~Vi~kER~G~YLG~TVQvIPHiTdeIk~~i~~~a~~~Dv~ivEiGGTVGD--IEs~pFlEAi  156 (534)
T PRK05380         81 TNLSKYN--NVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILRAAEGADVVIVEIGGTVGD--IESLPFLEAI  156 (534)
T ss_pred             CCCCCCC--CCCCCHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCCEEEH--HCCCHHHHHH
T ss_conf             8876666--60333989999888745786887347788866899999997277888899975762101--1026899999


Q ss_pred             HHHHHHHCCC-EEEEECC---CCCHH-----HHHHHHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             9999974794-4897057---76504-----579999999984799079999769--77800599999861998999947
Q gi|254780487|r  116 IDLIERWQFP-IILCART---SLGTI-----NHSLLSLETLRNRNINIIGIAFIG--DSMPKVEETIVKIGRIPHLGRLP  184 (217)
Q Consensus       116 ~dla~~l~~~-vILV~~~---~~g~i-----~~~~l~~~~~~~~g~~i~GiIlN~--~~~~~~~~~le~~~~ipvLG~iP  184 (217)
                      .++...++.. ++.|--.   .+.+.     --+--++..++..|+.---++.-.  ...+..++-|.-++++|.=.+|.
T Consensus       157 RQ~~~e~g~~n~~~iHvtlvP~l~~~gE~KTKPTQhSVkeLr~~GIqPDilvcRse~~l~~~~k~KIalfcnV~~~~VI~  236 (534)
T PRK05380        157 RQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEAVIS  236 (534)
T ss_pred             HHHHHHHCCCCEEEEEEECCCEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEE
T ss_conf             99987608787899997313101478754677318889999965899874786257768989999886415887899686


Q ss_pred             C
Q ss_conf             8
Q gi|254780487|r  185 K  185 (217)
Q Consensus       185 ~  185 (217)
                      -
T Consensus       237 ~  237 (534)
T PRK05380        237 A  237 (534)
T ss_pred             C
T ss_conf             2


No 98 
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=96.59  E-value=0.059  Score=31.65  Aligned_cols=147  Identities=14%  Similarity=0.094  Sum_probs=77.4

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             98329998358987479999999999840486120138873806899999855787311443001451034788999850
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG   80 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (217)
                      |++-=||.+-.-|||||.++.-|++.+.-....|+..    |+|+..-.-..........+.-..-. ...++       
T Consensus         1 Ma~IH~vlqgKGGVGKS~va~~LaQY~~~~~~~~~~i----DTDpvN~tf~~ykal~v~~i~I~e~~-~i~~r-------   68 (241)
T PRK13886          1 MAKIHMVLQGKGGVGKSMIAATIAQYKAGKGQKPLCI----DTDPVNATFEGYKALNVRRLNIMDGD-EINTR-------   68 (241)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEE----ECCCCCCCHHHCCCCCCEEEEEECCC-CCCHH-------
T ss_conf             9759998558886309999999999998359998556----08999705342143675577752388-65666-------


Q ss_pred             CCCHHHHHH-HHHHCCEEEEECCCCCCCCCC---CCCCHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHHHH-HCCCEE
Q ss_conf             235078864-223288799922765556676---7530899999747944897057-7650457999999998-479907
Q gi|254780487|r   81 VIIDPATIN-PPDINDSIIIEGIGGLLVPLT---TEYLFIDLIERWQFPIILCART-SLGTINHSLLSLETLR-NRNINI  154 (217)
Q Consensus        81 ~~i~~~~~~-~~~~~D~viIEGagg~~~~~~---~~~~~~dla~~l~~~vILV~~~-~~g~i~~~~l~~~~~~-~~g~~i  154 (217)
                       ..+..... +..+.|++|=-||.. +.|..   .+....++....+..+++=.-. +.+...+++...+.+. +-+-++
T Consensus        69 -~FD~l~E~i~~~~~~~VID~GAst-fvPL~~Yl~eN~v~~ll~e~G~~v~iH~vi~GGqa~~DT~~gl~~l~~~~~~~~  146 (241)
T PRK13886         69 -NFDALVEMIASTEGDVIIDNGASS-FVPLSHYLISNQVPALLQDMGHELVVHTVVTGGQALLDTVSGFAQLASQFPAEC  146 (241)
T ss_pred             -HHHHHHHHHHCCCCCEEEECCHHH-HHHHHHHHHHCCHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             -668999998568998899885176-778999998788699999779739999984598427789999999998658778


Q ss_pred             -EEEEECC
Q ss_conf             -9999769
Q gi|254780487|r  155 -IGIAFIG  161 (217)
Q Consensus       155 -~GiIlN~  161 (217)
                       .=+.+|.
T Consensus       147 ~~VVWlN~  154 (241)
T PRK13886        147 LFVVWLNP  154 (241)
T ss_pred             CEEEEECC
T ss_conf             78999748


No 99 
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.56  E-value=0.0058  Score=38.00  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             2999835898747999999999984
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      -|+|.|| ||+|||++++.|+.-|+
T Consensus        94 iILigGt-sGvGKSTlA~~LA~rLg  117 (306)
T PRK04220         94 IILIGGA-SGVGTSTIAFELASRLG  117 (306)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHC
T ss_conf             9998589-98878999999999709


No 100
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.44  E-value=0.0049  Score=38.43  Aligned_cols=72  Identities=19%  Similarity=0.157  Sum_probs=35.8

Q ss_pred             EEEEECCCCC-HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHH---HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             4897057765-0457999999998479907999976977800599---99986199899994788888887999999971
Q gi|254780487|r  126 IILCARTSLG-TINHSLLSLETLRNRNINIIGIAFIGDSMPKVEE---TIVKIGRIPHLGRLPKIDPIDPDVLHQKFQEH  201 (217)
Q Consensus       126 vILV~~~~~g-~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~~~---~le~~~~ipvLG~iP~~~~~~~~~l~~~~~~~  201 (217)
                      +.+|++.+.| +-..+-++..+....|-.=.|+|=-+...--..+   ...+..|+|+.=+      -+++.+.+.++++
T Consensus       197 i~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv------~~~~~l~~~l~~~  270 (282)
T TIGR03499       197 IALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVA------RDPKELAKALERL  270 (282)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEE------CCHHHHHHHHHHC
T ss_conf             9997788875788999999999997389967999807776789999999999959748993------9999999999865


Q ss_pred             HH
Q ss_conf             33
Q gi|254780487|r  202 FT  203 (217)
Q Consensus       202 ~~  203 (217)
                      -+
T Consensus       271 ~~  272 (282)
T TIGR03499       271 RD  272 (282)
T ss_pred             CC
T ss_conf             79


No 101
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.42  E-value=0.012  Score=36.06  Aligned_cols=99  Identities=22%  Similarity=0.318  Sum_probs=53.1

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEECCCC-CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             299983589874799999999998404861-2013887-38068999998557873114430014510347889998502
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK-PIQSGMY-EETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~~G~~-~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
                      ++=|.| ..|+|||++...+++.|+.. || .|.+|-. -.+|+.++.+..  ..+...++.-     ...|..+..-..
T Consensus        15 ~i~v~G-p~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~--g~~i~~v~TG-----~~CH~da~m~~~   85 (202)
T COG0378          15 RIGVGG-PPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLP--GEPIIGVETG-----KGCHLDASMNLE   85 (202)
T ss_pred             EEEECC-CCCCCHHHHHHHHHHHHHHH-CCEEEEECEEECHHHHHHHHHCC--CCEEEEECCC-----CCCCCCHHHHHH
T ss_conf             999617-99867899999999999752-77689964040065599997377--9806874038-----765886788999


Q ss_pred             CCHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf             3507886422328879992276555667675
Q gi|254780487|r   82 IIDPATINPPDINDSIIIEGIGGLLVPLTTE  112 (217)
Q Consensus        82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~  112 (217)
                      .++. +.......|+++||.+|-+..|...+
T Consensus        86 ai~~-l~~~~~~~Dll~iEs~GNL~~~~sp~  115 (202)
T COG0378          86 AIEE-LVLDFPDLDLLFIESVGNLVCPFSPD  115 (202)
T ss_pred             HHHH-HHHCCCCCCEEEEECCCCEECCCCCC
T ss_conf             9999-86317767789992376432446804


No 102
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.41  E-value=0.028  Score=33.69  Aligned_cols=144  Identities=21%  Similarity=0.206  Sum_probs=65.7

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCC---------CCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH-HHHH
Q ss_conf             99983589874799999999998404---------8612013887380689999985578731144300145103-4788
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAY---------YWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPA-SPHL   74 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~---------~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   74 (217)
                      |=|+|- |++|||+++-.|+..|+..         |||....          .............|..  +.... -.++
T Consensus        11 IgIaG~-SgSGKTTv~~~l~~~~~~~~~~~I~~D~YYk~~~~----------~~~~~~~~~n~d~p~A--~D~dLl~~~L   77 (218)
T COG0572          11 IGIAGG-SGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSH----------LPFEERNKINYDHPEA--FDLDLLIEHL   77 (218)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHH----------CCHHHCCCCCCCCHHH--HCHHHHHHHH
T ss_conf             998679-87788999999999828675247652232025301----------6675537857448234--3689999999


Q ss_pred             HHHHHHCCCHH---HHHH--------HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Q ss_conf             99985023507---8864--------223288799922765556676753089999974794489705776504579999
Q gi|254780487|r   75 AAEIDGVIIDP---ATIN--------PPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLS  143 (217)
Q Consensus        75 ~~~~~~~~i~~---~~~~--------~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~  143 (217)
                      .....+..+..   .|..        .-...+++||||..++.+        ..+-...+..+.+-++.+. ++..-+. 
T Consensus        78 ~~L~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VIIvEGi~~l~d--------~~lr~~~d~kIfvdt~~D~-RliRri~-  147 (218)
T COG0572          78 KDLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--------ERLRDLMDLKIFVDTDADV-RLIRRIK-  147 (218)
T ss_pred             HHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEECCCCCCC--------HHHHHHCCEEEEEECCCCH-HHHHHHH-
T ss_conf             99976992245642031363257733138972899942300150--------7677660678999778327-8899888-


Q ss_pred             HHHHHHCCCEEEEEEEC--CCCCCCHHHHHH
Q ss_conf             99998479907999976--977800599999
Q gi|254780487|r  144 LETLRNRNINIIGIAFI--GDSMPKVEETIV  172 (217)
Q Consensus       144 ~~~~~~~g~~i~GiIlN--~~~~~~~~~~le  172 (217)
                       .-.+.+|-++-.++-.  ....|.....+|
T Consensus       148 -RD~~~rg~~~~~vi~qy~~~vkp~~~~fIe  177 (218)
T COG0572         148 -RDVQERGRDLESVIEQYVKTVRPMYEQFIE  177 (218)
T ss_pred             -HHHHHHCCCHHHHHHHHHHHHCHHHHHCCC
T ss_conf             -779881999899999999861741460157


No 103
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35  E-value=0.017  Score=35.00  Aligned_cols=157  Identities=12%  Similarity=0.063  Sum_probs=69.2

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHH-HCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99983589874799999999998-40486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHAL-NAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l-~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      |-..|- ||||||++.+.|+..+ ...+-+-|.   ....|.+.+.-.-... .+..+..........+...        
T Consensus       351 ~AlvGp-TGvGKTTT~aKlAa~~~~~~g~~~va---lit~DtyRiga~eQL~-~y~~ilgvpv~~~~~~~~l--------  417 (557)
T PRK12727        351 IALVGP-TGAGKTTTIAKLAQRFAAQHAPRDVA---LVTTDTQRVGGREQLH-SYGRQLGIAVHEADSAESL--------  417 (557)
T ss_pred             EEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEE---EEECCCCCHHHHHHHH-HHHHHHCCEEEEECCHHHH--------
T ss_conf             787437-77673117999999999973998189---9972664087999999-9999839757982899999--------


Q ss_pred             HHHHHHHHHHCCEEEEECCCC-CCCCCCCCCCHHHHHHHHCCCEEEEECCCCC--HHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             078864223288799922765-5566767530899999747944897057765--0457999999998479907999976
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGG-LLVPLTTEYLFIDLIERWQFPIILCARTSLG--TINHSLLSLETLRNRNINIIGIAFI  160 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg-~~~~~~~~~~~~dla~~l~~~vILV~~~~~g--~i~~~~l~~~~~~~~g~~i~GiIlN  160 (217)
                      . .....-.++|+|||..+|- ..++...+.. ..+....+...+||.++...  .+..++   ..+  ..+++.|+||.
T Consensus       418 ~-~~l~~l~~~~lvliDTaG~~~rd~~~~~~~-~~l~~~~~~~~~Lvl~a~~~~~~l~~~~---~~~--~~~~~~~~i~T  490 (557)
T PRK12727        418 L-DLLERLRDYKLVLIDTAGMGQRDRALAAQL-NWLRAARQVTSLLVLPANAHFSDLDEVV---RRF--AHAKPQGVVLT  490 (557)
T ss_pred             H-HHHHHHCCCCEEEEECCCCCCCCHHHHHHH-HHHHCCCCCCEEEEEECCCCHHHHHHHH---HHH--CCCCCCEEEEE
T ss_conf             9-999983699989994999884699999999-9875147763599996889989999999---985--37998748996


Q ss_pred             CCC-CCCHHHHHHH--HCCCCEEE
Q ss_conf             977-8005999998--61998999
Q gi|254780487|r  161 GDS-MPKVEETIVK--IGRIPHLG  181 (217)
Q Consensus       161 ~~~-~~~~~~~le~--~~~ipvLG  181 (217)
                      +.- ....-+.+.-  .+++|+..
T Consensus       491 KlDE~~~~G~~l~~~~~~~lp~~y  514 (557)
T PRK12727        491 KLDETGRFGSALSVVVDHQMPITW  514 (557)
T ss_pred             ECCCCCCCCHHHHHHHHHCCCEEE
T ss_conf             143678703999999996898289


No 104
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=96.32  E-value=0.024  Score=34.13  Aligned_cols=119  Identities=14%  Similarity=0.027  Sum_probs=56.5

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCC--CCCHHHH-----HHHHHCCCCCCCCCCCCCCCCCH-HHHHHH
Q ss_conf             999835898747999999999984048612013887--3806899-----99985578731144300145103-478899
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMY--EETDSKT-----IHRIGRIPKSHIIPEKWKLRTPA-SPHLAA   76 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~--~~~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   76 (217)
                      |-|+|- |++|||+++-.|...|+..+.++......  ...|..+     .............-.|..+.... ..++..
T Consensus         2 IgIaG~-SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~d~P~a~d~~ll~~~l~~   80 (196)
T pfam00485         2 IGVAGS-SGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHMEDRKRAGNNHYSFFSPEANDFDLLYEQFKE   80 (196)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             899899-8571999999999996605877641243179860410244375767651457889789662359999999999


Q ss_pred             HHHHCCCHH---HH--------HHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf             985023507---88--------642232887999227655566767530899999747944897057
Q gi|254780487|r   77 EIDGVIIDP---AT--------INPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART  132 (217)
Q Consensus        77 ~~~~~~i~~---~~--------~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~  132 (217)
                      ...+..+..   .+        ...-+..+++||||...++.+        ++...++..+.+-++.
T Consensus        81 Lk~g~~i~~P~Ydf~~~~r~~~~~~i~p~~viIvEGi~~l~~~--------~ir~l~D~kIfid~~~  139 (196)
T pfam00485        81 LKEGGSGDKPIYNHVTGEADPWPELIEGADILFIEGLHGLYDE--------RVAQLLDLKIYVDPDI  139 (196)
T ss_pred             HHCCCCEEEEEEECCCCCCCCCCEECCCCCEEEEECHHHCCCH--------HHHHHHCEEEEEECCC
T ss_conf             7089945765675134533677366178856999433330327--------7887638479972680


No 105
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.12  E-value=0.099  Score=30.26  Aligned_cols=114  Identities=20%  Similarity=0.142  Sum_probs=55.6

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEE--------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCHHHHH
Q ss_conf             99983589874799999999998404861-201--------3887380689999985578731144300145-1034788
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWK-PIQ--------SGMYEETDSKTIHRIGRIPKSHIIPEKWKLR-TPASPHL   74 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~--------~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   74 (217)
                      |=|+|+ .|+|||+..-.|++.|+..+.| .|-        +|.---.|...+......+.-.....+.+-. ...++..
T Consensus         2 iGitG~-pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~~   80 (148)
T cd03114           2 IGITGV-PGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT   80 (148)
T ss_pred             EEECCC-CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH
T ss_conf             762589-9787899999999999978983799996888786686203235453441579983686346666542046889


Q ss_pred             HHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             9998502350788642232887999227655566767530899999747944897057765
Q gi|254780487|r   75 AAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLG  135 (217)
Q Consensus        75 ~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g  135 (217)
                      .        +.....-..++|+++||.+|-       +.+-.+++..-+. +++|.....|
T Consensus        81 ~--------~~i~~l~~~g~D~IiIETvGv-------GQse~~i~~~aD~-~i~v~~p~~G  125 (148)
T cd03114          81 P--------EVIRVLDAAGFDVIIVETVGV-------GQSEVDIASMADT-TVVVMAPGAG  125 (148)
T ss_pred             H--------HHHHHHHHCCCCEEEEECCCC-------CCCHHHHHHHCCE-EEEEECCCCC
T ss_conf             9--------999999975999899974877-------7560265543566-9999636887


No 106
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.05  E-value=0.015  Score=35.34  Aligned_cols=30  Identities=33%  Similarity=0.465  Sum_probs=24.0

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             9998358987479999999999840486120
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      |=|+|- |++|||+++-.|...+...+.+++
T Consensus         2 IgIaG~-SgSGKTT~a~~L~~~l~~~~~~~~   31 (179)
T cd02028           2 VGIAGP-SGSGKTTFAKKLSNQLRVNGIGPV   31 (179)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             899898-977899999999999846488539


No 107
>KOG2749 consensus
Probab=96.00  E-value=0.027  Score=33.75  Aligned_cols=129  Identities=14%  Similarity=0.144  Sum_probs=61.3

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE------CCC---CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH-H
Q ss_conf             83299983589874799999999998404861201------388---7380689999985578731144300145103-4
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ------SGM---YEETDSKTIHRIGRIPKSHIIPEKWKLRTPA-S   71 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~------~G~---~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~   71 (217)
                      ..+++|.|- ||+|||+++--|+...-+.++||.-      +|.   +-..-+..+............-.|..+.... +
T Consensus       103 GPrv~vVGp-~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~~~D~~eGf~l~~pLV~~FG~~s  181 (415)
T KOG2749         103 GPRVMVVGP-TDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEMPLDVIEGFSLTAPLVYNFGLTS  181 (415)
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEECCCCHHHEECCCCCCHHHCCCCCCCEEEECCCCC
T ss_conf             977999898-7656678999999999871786538974799972442542220210232434317656885266326899


Q ss_pred             HHHHHHHHHCCCHH---HH-HHH----HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf             78899985023507---88-642----2328879992276555667675308999997479448970577
Q gi|254780487|r   72 PHLAAEIDGVIIDP---AT-INP----PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTS  133 (217)
Q Consensus        72 ~~~~~~~~~~~i~~---~~-~~~----~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~  133 (217)
                      |....++....+..   .. .++    .....-+||+..|=. .+.. -....+.++..++.+++|.+..
T Consensus       182 p~~N~~LY~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g~i-~~eg-y~~llhai~~f~v~vviVLg~E  249 (415)
T KOG2749         182 PSTNLELYKALVSELAEVLKQRLSLNPEARVSGCIINTCGWI-EGEG-YAALLHAIKAFEVDVVIVLGQE  249 (415)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCEEEECCCEE-CCCC-HHHHHHHHHHCCCCEEEEECCH
T ss_conf             876889999999999999998742581110055487126314-1555-8999999997076489996647


No 108
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=95.95  E-value=0.0035  Score=39.37  Aligned_cols=31  Identities=26%  Similarity=0.333  Sum_probs=26.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             29998358987479999999999840486120
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      -|++||- ||+|||+++.+|-+.|...|++-.
T Consensus        21 vlWlTGL-SGsGKsTiA~Al~~~L~~~G~~~~   51 (187)
T TIGR00455        21 VLWLTGL-SGSGKSTIANALEKKLEKKGYRVY   51 (187)
T ss_pred             EEEEECC-CCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf             9851168-856357999999999996697499


No 109
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.91  E-value=0.0065  Score=37.67  Aligned_cols=25  Identities=44%  Similarity=0.579  Sum_probs=21.8

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             32999835898747999999999984
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      +-|+|+|. |++|||.++..|++.++
T Consensus         5 ~ii~i~Gp-TasGKs~la~~la~~~~   29 (304)
T PRK00091          5 KLIVLVGP-TASGKTALAIELAKRLN   29 (304)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHCC
T ss_conf             77999898-86589999999999879


No 110
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=95.91  E-value=0.078  Score=30.91  Aligned_cols=142  Identities=15%  Similarity=0.059  Sum_probs=80.4

Q ss_pred             EEEECCCCCCCHHHHHHHHH---HHHHCCC-CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99983589874799999999---9984048-6120138873806899999855787311443001451034788999850
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALV---HALNAYY-WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG   80 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~---~~l~~~~-~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (217)
                      -|--=.|+|.|||++|=.|+   .+++.+| .|.=.++..-.+|.+.+.+--+.+.+.+.+...     +          
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~-----Y----------   78 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFD-----Y----------   78 (528)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEE-----C----------
T ss_conf             0368856888851188999972303430550122257763422778888756855876578760-----3----------


Q ss_pred             CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             23507886422328879992276555667675308999997479448970577650457999999998479907999976
Q gi|254780487|r   81 VIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFI  160 (217)
Q Consensus        81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN  160 (217)
                                 +++-+-|....|.-    .+..++.+...+.+ ..+.|.++..|--.+++--.+.++.||++|.-+|--
T Consensus        79 -----------~~~~iNLLDTPGHe----DFSEDTYRtLtAvD-sAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNK  142 (528)
T COG4108          79 -----------ADCLVNLLDTPGHE----DFSEDTYRTLTAVD-SAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINK  142 (528)
T ss_pred             -----------CCEEEECCCCCCCC----CCCHHHHHHHHHHH-EEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             -----------88488614799865----43236789998641-046898603586688999999985059846997502


Q ss_pred             CCC--CC--CHHHHHHHHCCC
Q ss_conf             977--80--059999986199
Q gi|254780487|r  161 GDS--MP--KVEETIVKIGRI  177 (217)
Q Consensus       161 ~~~--~~--~~~~~le~~~~i  177 (217)
                      -+.  ..  ..-+.+|+..+|
T Consensus       143 lDR~~rdP~ELLdEiE~~L~i  163 (528)
T COG4108         143 LDREGRDPLELLDEIEEELGI  163 (528)
T ss_pred             CCCCCCCHHHHHHHHHHHHCC
T ss_conf             365668868999999998577


No 111
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.89  E-value=0.057  Score=31.76  Aligned_cols=101  Identities=20%  Similarity=0.181  Sum_probs=62.1

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCC-CCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99983589874799999999998404-86120138873806899999855787311443001451034788999850235
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAY-YWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~-~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      +-+.|+..|+|||+++.-|+.++... +.|-.-    .|-|.+                                     
T Consensus         2 i~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~l----vDldlq-------------------------------------   40 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLL----VDLDLQ-------------------------------------   40 (106)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEE----EECCCC-------------------------------------
T ss_conf             899728998668999999999999841993899----965467-------------------------------------


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCE---EEEEEEC
Q ss_conf             0788642232887999227655566767530899999747944897057765045799999999847990---7999976
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNIN---IIGIAFI  160 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~---i~GiIlN  160 (217)
                              -+.|++||....++-.....-...+|       .+++|+.-.+-++-.+--.++.++..+.+   -.-+|+|
T Consensus        41 --------fGdd~VVvD~~~~~~~~~~~al~~ad-------~i~lv~~~~lp~lrn~kr~l~~l~~l~~~~~~ki~lVvN  105 (106)
T cd03111          41 --------FGDDYVVVDLGRSLDEVSLAALDQAD-------RVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLN  105 (106)
T ss_pred             --------CCCCEEEECCCCCCCHHHHHHHHHCC-------EEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             --------79978999186553889999998679-------799980677489997999999999849997365699857


Q ss_pred             C
Q ss_conf             9
Q gi|254780487|r  161 G  161 (217)
Q Consensus       161 ~  161 (217)
                      +
T Consensus       106 R  106 (106)
T cd03111         106 R  106 (106)
T ss_pred             C
T ss_conf             9


No 112
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.86  E-value=0.14  Score=29.27  Aligned_cols=116  Identities=18%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC----------CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             299983589874799999999998404861----------2013887380689999985578731144300145103478
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK----------PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPH   73 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K----------Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (217)
                      +|=|||+ +|+||++..-.|.+-|+..+.|          |+ ||.--=.|-..++.+...+.-...+.|..  .....-
T Consensus        53 viGITG~-PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~-TGGsiLGDRiRM~~~~~~~~vFiRs~~sr--G~lGGl  128 (323)
T COG1703          53 VIGITGV-PGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF-TGGSILGDRIRMQRLAVDPGVFIRSSPSR--GTLGGL  128 (323)
T ss_pred             EEEECCC-CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CCCCCCCCHHHHHHHCCCCCEEEEECCCC--CCCHHH
T ss_conf             7873179-9886688999999999977967899998899998-78530120766776446998178426877--651016


Q ss_pred             HHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCH
Q ss_conf             899985023507886422328879992276555667675308999997479448970577650
Q gi|254780487|r   74 LAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGT  136 (217)
Q Consensus        74 ~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~  136 (217)
                      ..+..+     .-...-..+||++|||.+|=       +.+-++++..-+.-+++..+ +.|-
T Consensus       129 S~at~~-----~i~~ldAaG~DvIIVETVGv-------GQsev~I~~~aDt~~~v~~p-g~GD  178 (323)
T COG1703         129 SRATRE-----AIKLLDAAGYDVIIVETVGV-------GQSEVDIANMADTFLVVMIP-GAGD  178 (323)
T ss_pred             HHHHHH-----HHHHHHHCCCCEEEEEECCC-------CCCHHHHHHHCCEEEEEECC-CCCC
T ss_conf             688999-----99999861898899981478-------84155776521668999657-8882


No 113
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762   The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages:    (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer.    Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC)  and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales .    This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=95.79  E-value=0.012  Score=35.96  Aligned_cols=35  Identities=37%  Similarity=0.397  Sum_probs=31.4

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             83299983589874799999999998404861201388
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      .|.|=||||+   ||||+|..+.+.|+..|+|.+..|.
T Consensus       110 ~~~~aITGTn---GKtTTT~L~~~~L~~~G~~a~~gGN  144 (476)
T TIGR01087       110 AKVVAITGTN---GKTTTTSLLYHLLKAAGLKAVLGGN  144 (476)
T ss_pred             CCEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             7379997268---6079999999999846997786257


No 114
>PRK12338 hypothetical protein; Provisional
Probab=95.76  E-value=0.037  Score=32.92  Aligned_cols=28  Identities=29%  Similarity=0.483  Sum_probs=21.8

Q ss_pred             CCCE--EEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             9832--9998358987479999999999840
Q gi|254780487|r    1 MKLR--LVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         1 M~~~--i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      |++.  |++.|| ||+||++++..|+.-|..
T Consensus         1 mr~PliILiGGt-SGvGKSTlAseLAsRLgI   30 (320)
T PRK12338          1 MRKPYVILIGSA-SGIGKSTIASEVARRLNI   30 (320)
T ss_pred             CCCCEEEEEECC-CCCCHHHHHHHHHHHCCC
T ss_conf             997679997068-887688899999985198


No 115
>PRK04040 adenylate kinase; Provisional
Probab=95.75  E-value=0.16  Score=28.99  Aligned_cols=118  Identities=15%  Similarity=0.067  Sum_probs=64.3

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHH-HCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             983299983589874799999999998404861201388738068999998-5578731144300145103478899985
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRI-GRIPKSHIIPEKWKLRTPASPHLAAEID   79 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (217)
                      |.|.++|+|- +|||||+++..+.+.++. .||-|.     ..|.++-.-. .+...+.+.+--      .++....++ 
T Consensus         1 ~~k~VvvtGi-PGvGKTTv~~~~~~~l~~-~~~~vn-----~G~~M~e~A~~~glv~~RDemRk------L~~~~q~~l-   66 (189)
T PRK04040          1 MMKVVVVTGV-PGVGKTTVLNKALEKLKE-DYKIVN-----FGDVMLEVAKEEGLVEHRDEMRK------LPLEEQKEL-   66 (189)
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHHHCC-CCEEEE-----HHHHHHHHHHHCCCCCCHHHHCC------CCHHHHHHH-
T ss_conf             9418999758-988789999999997235-875986-----77999999998177347788747------999999999-


Q ss_pred             HCCCHHHHHHHH--HHCCEEEEECCCCCCCCCC-CCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             023507886422--3288799922765556676-7530899999747944897057765
Q gi|254780487|r   80 GVIIDPATINPP--DINDSIIIEGIGGLLVPLT-TEYLFIDLIERWQFPIILCARTSLG  135 (217)
Q Consensus        80 ~~~i~~~~~~~~--~~~D~viIEGagg~~~~~~-~~~~~~dla~~l~~~vILV~~~~~g  135 (217)
                       +.  .+-....  .+...+||..=..+..|.. ...+-..+.+.|+..+|++.-++..
T Consensus        67 -Q~--~Aa~~I~~~~~~~~ViIDTHa~Iktp~GylpGLP~~Vl~~L~P~~ivlieA~P~  122 (189)
T PRK04040         67 -QR--EAAERIAEMAGEGPVIVDTHATIKTPGGYLPGLPEWVLEELNPDVIVLIEADPD  122 (189)
T ss_pred             -HH--HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCHH
T ss_conf             -99--999999983578728994452002688677899899998669988999975889


No 116
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=95.72  E-value=0.024  Score=34.10  Aligned_cols=37  Identities=30%  Similarity=0.478  Sum_probs=31.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCC
Q ss_conf             299983589874799999999998404861201388738
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEE   42 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~   42 (217)
                      -+.-.|- +|||||++.--+++||++.||+ |+-|.-.|
T Consensus       452 IlClvGP-PGVGKTSlg~SIA~ALnRkFvR-~SlGG~~D  488 (941)
T TIGR00763       452 ILCLVGP-PGVGKTSLGKSIAKALNRKFVR-FSLGGVRD  488 (941)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHCCEEEE-EEECCCEE
T ss_conf             7872072-6954222789999996880499-95267220


No 117
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.62  E-value=0.025  Score=34.06  Aligned_cols=59  Identities=17%  Similarity=0.260  Sum_probs=35.9

Q ss_pred             CC-CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             98-32999835898747999999999984048612013887380689999985578731144300
Q gi|254780487|r    1 MK-LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKW   64 (217)
Q Consensus         1 M~-~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~   64 (217)
                      |+ ++|+|.|. +|+|||+|...|++.|...|+    -|..-.+.....+...+.+.+..+..||
T Consensus         1 ~~~~a~VVmGV-sGsGKSTvg~~LA~~L~~~fi----egDd~Hp~~Ni~KM~~GiPL~D~DR~pW   60 (176)
T PRK09825          1 MAGESYILMGV-SGSGKSLIGSKIAALFSAKFI----DGDDLHPAKNIDKMSQGIPLTDEDRLPW   60 (176)
T ss_pred             CCCCEEEEEEC-CCCCHHHHHHHHHHHHCCCEE----CCCCCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf             99857999828-989989999999999598776----2344378989999868999886679999


No 118
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.62  E-value=0.087  Score=30.62  Aligned_cols=115  Identities=18%  Similarity=0.180  Sum_probs=53.4

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC-HHHHHHHHHHHCCC
Q ss_conf             99983589874799999999998404861201388738068999998557873114430014510-34788999850235
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTP-ASPHLAAEIDGVII   83 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i   83 (217)
                      |=|||- ||+|||+++-.|.+.|.......+..-...--|.... ...+.  +...  |-.+... ...++.+..++..+
T Consensus         2 IgVaG~-SGSGKTTv~~~i~~ifg~~~v~vI~~D~Yhr~dr~~r-~~~~~--t~~~--P~And~dll~~~l~~Lk~Gk~i   75 (273)
T cd02026           2 IGVAGD-SGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGR-KETGI--TALD--PRANNFDLMYEQLKALKEGQAI   75 (273)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHH-HHHCC--CCCC--CCHHHHHHHHHHHHHHHCCCCC
T ss_conf             899788-8786999999999985848769996577788998999-87187--7689--7523499999999999859953


Q ss_pred             HHH---H-------HHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf             078---8-------6422328879992276555667675308999997479448970577
Q gi|254780487|r   84 DPA---T-------INPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTS  133 (217)
Q Consensus        84 ~~~---~-------~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~  133 (217)
                      ..-   +       ...-+..|++|+||.-+++.+        ++...+++.+.++.+..
T Consensus        76 ~~PvYdh~tg~~~~~e~i~p~diII~EGLh~l~~~--------~lrdl~DLkIfVD~d~d  127 (273)
T cd02026          76 EKPIYNHVTGLIDPPELIKPTKIVVIEGLHPLYDE--------RVRELLDFSVYLDISDE  127 (273)
T ss_pred             CCCCCCCCCCCCCCCEEECCCCEEEEECEECCCCH--------HHHHHHCEEEEECCCHH
T ss_conf             43222145896577565068747999220002668--------89866074688568764


No 119
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761   The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages:    (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer.    Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC)  and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales .    This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=95.58  E-value=0.01  Score=36.51  Aligned_cols=27  Identities=30%  Similarity=0.314  Sum_probs=23.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      -|=||||+   |||+||..+.+.|+..|-|
T Consensus        90 viGvTGTN---GKTtt~~li~~~l~~~G~~  116 (494)
T TIGR01085        90 VIGVTGTN---GKTTTTSLIAQLLELLGKK  116 (494)
T ss_pred             EEEEEECC---CCHHHHHHHHHHHHHCCCE
T ss_conf             89997128---7448999999999867970


No 120
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892    Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=95.57  E-value=0.015  Score=35.31  Aligned_cols=101  Identities=21%  Similarity=0.263  Sum_probs=58.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHHHHHHHHC-
Q ss_conf             29998358987479999999999840486120138873806899999855-7873114430014510347889998502-
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGR-IPKSHIIPEKWKLRTPASPHLAAEIDGV-   81 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   81 (217)
                      -|.|.|- +|+|||||+--|++-|.   +|-|.+|.        ++.++. +..+...            +..+ .+.. 
T Consensus         2 ~I~ISGp-PGSGktTvA~~lA~~Ls---l~~iSaG~--------iRelA~~~Gldl~E------------~~~a-ee~~e   56 (173)
T TIGR02173         2 IITISGP-PGSGKTTVAKILAEKLS---LKLISAGD--------IRELAEKMGLDLAE------------SKYA-EENPE   56 (173)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHCC---CCEECCCH--------HHHHHHHCCCCHHH------------HHHH-CCCCC
T ss_conf             7887358-96864789999998639---83120200--------78898642988777------------3443-05863


Q ss_pred             ---CCHHHHHHHHHHCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf             ---35078864223288799922-765556676753089999974794489705
Q gi|254780487|r   82 ---IIDPATINPPDINDSIIIEG-IGGLLVPLTTEYLFIDLIERWQFPIILCAR  131 (217)
Q Consensus        82 ---~i~~~~~~~~~~~D~viIEG-agg~~~~~~~~~~~~dla~~l~~~vILV~~  131 (217)
                         .++......+.+.+=+|+|| .+||....  +..-+|+.-+|+||.=.=+.
T Consensus        57 IDk~iD~~~~E~A~~~~nvvlEsrlagW~~~~--nG~yaD~~iyL~A~levRA~  108 (173)
T TIGR02173        57 IDKKIDRRIREIAEKEKNVVLESRLAGWILKK--NGEYADVKIYLKAPLEVRAR  108 (173)
T ss_pred             CCHHHHHHHHHHHCCCCCEEEEEHHHHHHCCC--CCCCCCEEEEECCCHHHHHH
T ss_conf             11675378855430489668852054331157--88967567886088333243


No 121
>COG4028 Predicted P-loop ATPase/GTPase [General function prediction only]
Probab=95.56  E-value=0.0089  Score=36.81  Aligned_cols=60  Identities=23%  Similarity=0.455  Sum_probs=40.2

Q ss_pred             EEEEEC-CCCCCCHHHHHHHHHHHHHCCCCCCEEC----------------CCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             299983-5898747999999999984048612013----------------887380689999985578731144300
Q gi|254780487|r    4 RLVIVG-TDTSVGKTIFASALVHALNAYYWKPIQS----------------GMYEETDSKTIHRIGRIPKSHIIPEKW   64 (217)
Q Consensus         4 ~i~I~G-T~t~vGKT~vs~~L~~~l~~~~~KPv~~----------------G~~~~~D~~~~~~~~~~~~~~~~~~~~   64 (217)
                      +++|.| --+|+|||+.++-|+|+++...|||++-                |.....|+..+ .......+....+|.
T Consensus         2 ~vLvvGlLp~DSGKTTfaL~lirg~dl~pfKP~~GhN~Wy~y~~l~rs~ElGllvg~DalKl-~vaes~~~i~~~nPv   78 (271)
T COG4028           2 RVLVVGLLPLDSGKTTFALSLIRGIDLFPFKPIAGHNAWYSYNTLIRSEELGLLVGNDALKL-KVAESIDRIELENPV   78 (271)
T ss_pred             EEEEEEEEECCCCCEEEEEEEHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHCCEECHHHHHH-HHHCCCCCCEECCCE
T ss_conf             69998311237886168734101001002566567530577145345265372323255543-012023430342850


No 122
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.44  E-value=0.033  Score=33.28  Aligned_cols=34  Identities=26%  Similarity=0.269  Sum_probs=29.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             3299983589874799999999998404861201388
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      +.|-||||+   |||++|..+.+.|+..+++|+..|.
T Consensus       113 ~~IaVTGTn---GKTTTt~ll~~iL~~~g~~~~~~GN  146 (450)
T PRK02472        113 PIIGITGSN---GKTTTTTLIAEMLNAGGQHGLLAGN  146 (450)
T ss_pred             CEEEEECCC---CCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             789982799---9731999999999974997399941


No 123
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.44  E-value=0.051  Score=32.09  Aligned_cols=126  Identities=19%  Similarity=0.048  Sum_probs=69.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCC--EE--CCCCCCCHHHHHHHHHCC--CCCCC--CCCCCCCCCCHHHHHH
Q ss_conf             2999835898747999999999984048612--01--388738068999998557--87311--4430014510347889
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKP--IQ--SGMYEETDSKTIHRIGRI--PKSHI--IPEKWKLRTPASPHLA   75 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP--v~--~G~~~~~D~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~   75 (217)
                      +++|.|- .|+|||+.|.-|+.-+-.+|+|-  +-  .|..+-..+.++....-.  ..+..  .+.-..|....+|...
T Consensus        75 ~vmvvG~-vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~isP~~~  153 (398)
T COG1341          75 VVMVVGP-VDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSISPQGF  153 (398)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCEEEEECCCCCCC
T ss_conf             8999898-676788999999988764474189996899976667974677412567777777758652279851477777


Q ss_pred             HHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf             99850235078864223288799922765556676753089999974794489705
Q gi|254780487|r   76 AEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCAR  131 (217)
Q Consensus        76 ~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~  131 (217)
                      ....-..+......+.+..|++||...| |-.+...-..-..++...+..-|++..
T Consensus       154 ~~~~i~~v~rL~~~a~~~~~~ilIdT~G-Wi~G~~g~elk~~li~~ikP~~Ii~l~  208 (398)
T COG1341         154 PGRYIAGVARLVDLAKKEADFILIDTDG-WIKGWGGLELKRALIDAIKPDLIIALE  208 (398)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCCC-CEECCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             6899999999999865168779996998-430742789999988650977899931


No 124
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321   These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=95.44  E-value=0.013  Score=35.70  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=24.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      =|+|||- |||||||+-++|+-.++....+
T Consensus       129 LiLVTGP-TGSGKSTTlAsmIDyIN~~~~~  157 (350)
T TIGR01420       129 LILVTGP-TGSGKSTTLASMIDYINKNKAG  157 (350)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHHCCCCC
T ss_conf             3898768-8986789999999787403888


No 125
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=95.42  E-value=0.045  Score=32.43  Aligned_cols=117  Identities=20%  Similarity=0.140  Sum_probs=56.1

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCC-EE----CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH-
Q ss_conf             999835898747999999999984048612-01----388738068999998557873114430014510347889998-
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKP-IQ----SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEI-   78 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP-v~----~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (217)
                      |-|+|- +++|||+++-.|++.++..+-++ +.    -|+. ..+..+...  +...  ..=.|+.|....-......+ 
T Consensus        37 IgIaG~-pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH-~~~~~L~~~--~~~~--rkGaP~TFD~~~l~~~L~~Lk  110 (230)
T PRK09270         37 VGIAGP-PGAGKSTLAETLWEALSQQGPELPAIQVPMDGFH-LDNAVLDAR--GLRA--RKGAPETFDVAGLAELLRRLR  110 (230)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCC-CCHHHHHHC--CCCC--CCCCCCCCCHHHHHHHHHHHH
T ss_conf             999899-9889999999999998623799857997365334-572555435--4743--379910216988999999985


Q ss_pred             HHC-CC-HHHHH-----------HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf             502-35-07886-----------4223288799922765556676753089999974794489705
Q gi|254780487|r   79 DGV-II-DPATI-----------NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCAR  131 (217)
Q Consensus        79 ~~~-~i-~~~~~-----------~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~  131 (217)
                      .+. .+ ...|.           ......+++||||.-=+.    ...-+.++...++..+.+=++
T Consensus       111 ~~~~~v~~P~yD~~~~d~~~~~~~i~~~~~IVIvEGnyLLl----d~~~W~~l~~~~D~~ifvd~~  172 (230)
T PRK09270        111 EGDCEVYWPVFDRQLEDPVADAIVVGPTARLVIVEGNYLLL----DDEPWRRLAGFFDFSIFLDAP  172 (230)
T ss_pred             CCCCCEEECCCCCCCCCCCCCCEEECCCCCEEEEECEEEEC----CCCCHHHHHHHHCEEEEEECC
T ss_conf             68971752134322457788953666998689993447613----783289999863767998489


No 126
>PTZ00301 uridine kinase; Provisional
Probab=95.40  E-value=0.036  Score=33.03  Aligned_cols=164  Identities=16%  Similarity=0.075  Sum_probs=71.9

Q ss_pred             CCC-EEEEECCCCCCCHHHHHHHHHHHHHCCC-CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHH-------
Q ss_conf             983-2999835898747999999999984048-6120138873806899999855787311443001451034-------
Q gi|254780487|r    1 MKL-RLVIVGTDTSVGKTIFASALVHALNAYY-WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPAS-------   71 (217)
Q Consensus         1 M~~-~i~I~GT~t~vGKT~vs~~L~~~l~~~~-~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   71 (217)
                      |.. -|=|||- |++|||+++..|+..+...+ -..++.   -..|..+ .....  .+........|.+|.+       
T Consensus         1 m~~~iIgIaGg-SgSGKTT~a~~i~~~l~~~~~~~~v~i---i~~D~Yy-~d~~~--~~~~~~~~~NfDhP~a~D~dLl~   73 (210)
T PTZ00301          1 MPCTVIGISGA-SGSGKSSLSTNIVSELMAHCGPVSIGV---ICEDFYY-RDQSN--IPESERAYTNYDHPKSLEHDLLT   73 (210)
T ss_pred             CCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCCEEE---EECCCCC-CCCCC--CCHHHCCCCCCCCCCCCCHHHHH
T ss_conf             99889999688-767899999999999876149980799---8367667-78765--88656278899982303699999


Q ss_pred             HHHHHHHHHCCCHH---HHH--------HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf             78899985023507---886--------4223288799922765556676753089999974794489705776504579
Q gi|254780487|r   72 PHLAAEIDGVIIDP---ATI--------NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHS  140 (217)
Q Consensus        72 ~~~~~~~~~~~i~~---~~~--------~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~  140 (217)
                      .++.+...+..+..   .|.        ..-+..+++||||...++.+        .+...++..+.+=++.      +.
T Consensus        74 ~~L~~Lk~Gk~I~~P~Ydf~~h~R~~~~~~i~p~~vIIvEGi~~l~~~--------~lr~l~DlkIFvd~~~------di  139 (210)
T PTZ00301         74 THLRELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNA--------ELRNEMDCLIFVDTPL------DI  139 (210)
T ss_pred             HHHHHHHCCCCEECCCCCCCCCCCCCCEEEECCCCEEEEEEEHHCCCH--------HHHHHHCEEEEECCCH------HH
T ss_conf             999999769963446655567766797089668856999710430789--------8997742457734872------37


Q ss_pred             HHHHHHH---HHCCCEEEEEEEC--CCCCCCHHHHHHHHCC-CCEEEEECCCC
Q ss_conf             9999999---8479907999976--9778005999998619-98999947888
Q gi|254780487|r  141 LLSLETL---RNRNINIIGIAFI--GDSMPKVEETIVKIGR-IPHLGRLPKID  187 (217)
Q Consensus       141 ~l~~~~~---~~~g~~i~GiIlN--~~~~~~~~~~le~~~~-ipvLG~iP~~~  187 (217)
                      .+.-...   +.||-.+..|+-.  +.-.|.+++.++-... .-+  +||+..
T Consensus       140 rl~RRi~RDv~eRGr~~e~Vi~qy~~~V~P~~~~fI~P~k~~ADi--IIp~~~  190 (210)
T PTZ00301        140 CLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADI--IVPSWK  190 (210)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCCHHHHCCCE--EECCCC
T ss_conf             889988877887588999999999966230588768051633618--978999


No 127
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.38  E-value=0.078  Score=30.91  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=29.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             3299983589874799999999998404861201388
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      +.|-||||+   |||++|.-|.+.|+..+++++..|.
T Consensus       118 ~~IaVTGTn---GKTTTtsmi~~iL~~~g~~~~~gGN  151 (458)
T PRK01710        118 KVFGITGSD---GKTTTTTLIYEMLKEEGYKTWVGGN  151 (458)
T ss_pred             CEEEEECCC---CCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             779993689---8478999999999984997585166


No 128
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.31  E-value=0.044  Score=32.46  Aligned_cols=24  Identities=29%  Similarity=0.482  Sum_probs=20.2

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             9998358987479999999999840
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      |-|+|- |++|||+++-.|.+.|+.
T Consensus         2 IgI~G~-sgsGKTT~a~~L~~~l~~   25 (198)
T cd02023           2 IGIAGG-SGSGKTTVAEEIIEQLGN   25 (198)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf             898899-988599999999998099


No 129
>PRK03839 putative kinase; Provisional
Probab=95.28  E-value=0.02  Score=34.55  Aligned_cols=24  Identities=38%  Similarity=0.571  Sum_probs=20.8

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             3299983589874799999999998
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      +.|.|||| +|+|||+++-.|+..+
T Consensus         1 M~I~ITGT-PGtGKTTva~~La~~l   24 (180)
T PRK03839          1 MIIAITGT-PGVGKTTISKLLAEKL   24 (180)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHH
T ss_conf             98999789-9999899999999976


No 130
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.24  E-value=0.24  Score=27.88  Aligned_cols=145  Identities=18%  Similarity=0.208  Sum_probs=80.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             299983589874799999999998404861-2013887380689999985578731144300145103478899985023
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK-PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI   82 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (217)
                      ++...|-++|+||++..+-++..+...+.| -..+|  +++-.+.-.++-.+.....  +.+.+....-......     
T Consensus        83 SvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSG--EES~~QIk~RA~RLg~~~~--~l~l~set~le~Il~~-----  153 (372)
T cd01121          83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG--EESPEQIKLRADRLGISTE--NLYLLAETNLEDILAS-----  153 (372)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--HHHHHHHHHHHHHHCCCCC--CCEEEECCCHHHHHHH-----
T ss_conf             179982599886889999999999863993899824--5678999989998587887--7278843569999999-----


Q ss_pred             CHHHHHHHHHHCCEEEEECCCCCCCCCCCC------------CCHHHHHHHHCCCEEEEECC-CCCHH------HHHHHH
Q ss_conf             507886422328879992276555667675------------30899999747944897057-76504------579999
Q gi|254780487|r   83 IDPATINPPDINDSIIIEGIGGLLVPLTTE------------YLFIDLIERWQFPIILCART-SLGTI------NHSLLS  143 (217)
Q Consensus        83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~------------~~~~dla~~l~~~vILV~~~-~~g~i------~~~~l~  143 (217)
                          .  ...+.|++||+..=-++.+....            ....++||..+.+++||+.. +.|.+      .|-.-+
T Consensus       154 ----i--~~~kP~~lIIDSIQT~~~~~~~s~pGsvsQVReca~~L~~~AK~~~i~~~lVGHVTK~G~iAGPkvLEHmVDt  227 (372)
T cd01121         154 ----I--EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDT  227 (372)
T ss_pred             ----H--HHHCCCEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHEEEEEE
T ss_conf             ----9--9719988999562202037767799878999999999999998619739999876268863774031002136


Q ss_pred             HHHHH---HCCCEEEEEEECCCC
Q ss_conf             99998---479907999976977
Q gi|254780487|r  144 LETLR---NRNINIIGIAFIGDS  163 (217)
Q Consensus       144 ~~~~~---~~g~~i~GiIlN~~~  163 (217)
                      +-+++   ....++.=.+=|+..
T Consensus       228 Vl~fEgd~~~~~R~LR~~KNRFG  250 (372)
T cd01121         228 VLYFEGDRHSEYRILRSVKNRFG  250 (372)
T ss_pred             EEEECCCCCCCEEEEEEECCCCC
T ss_conf             88751577655035674115677


No 131
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.18  E-value=0.12  Score=29.84  Aligned_cols=34  Identities=32%  Similarity=0.319  Sum_probs=29.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             3299983589874799999999998404861201388
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      +.|-||||+   |||++|..+.+-|+..++++...|.
T Consensus       110 ~~IaVTGTn---GKTTTt~ll~~iL~~~g~~~~~~GN  143 (459)
T PRK02705        110 PWVGITGTN---GKTTVTHLLAHILQAAGLNAPMCGN  143 (459)
T ss_pred             CEEEEECCC---CCHHHHHHHHHHHHHCCCCCEEECC
T ss_conf             757771789---7278999999999983998536401


No 132
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.16  E-value=0.23  Score=27.95  Aligned_cols=117  Identities=18%  Similarity=0.127  Sum_probs=61.9

Q ss_pred             CC--CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHH-HHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             98--32999835898747999999999984048612013887380689999-9855787311443001451034788999
Q gi|254780487|r    1 MK--LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIH-RIGRIPKSHIIPEKWKLRTPASPHLAAE   77 (217)
Q Consensus         1 M~--~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (217)
                      |+  |.+.|+|- +|||||+|+--..+.+  ..+|-|.     +.|.++-. .-.+.....+.+-    ..|...  ...
T Consensus         1 mk~~kvvvitGV-pGvGKTTVl~~~~~~l--~~~~ivN-----yG~~Mle~A~k~glve~rD~~R----klp~e~--Q~~   66 (189)
T COG2019           1 MKGRKVVVITGV-PGVGKTTVLKIALKEL--VKHKIVN-----YGDLMLEIAKKKGLVEHRDEMR----KLPLEN--QRE   66 (189)
T ss_pred             CCCCEEEEEECC-CCCCHHHHHHHHHHHH--HHCEEEE-----HHHHHHHHHHHHCCCCCHHHHH----CCCHHH--HHH
T ss_conf             997559999757-9887266999999877--5220000-----7699999999838720289885----298889--999


Q ss_pred             HHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCC-CCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf             8502350788642232887999227655566767-530899999747944897057765
Q gi|254780487|r   78 IDGVIIDPATINPPDINDSIIIEGIGGLLVPLTT-EYLFIDLIERWQFPIILCARTSLG  135 (217)
Q Consensus        78 ~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~-~~~~~dla~~l~~~vILV~~~~~g  135 (217)
                      +    ...+-.+..+...-+||.+-+.+-.|... ..+=..+...++.++|++.-++..
T Consensus        67 l----q~~Aa~rI~~~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~  121 (189)
T COG2019          67 L----QAEAAKRIAEMALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPE  121 (189)
T ss_pred             H----HHHHHHHHHHHHCCEEEECCCEECCCCCCCCCCCHHHHHHCCCCEEEEEECCHH
T ss_conf             9----999999999742065873241114787667788399997529887999937989


No 133
>PRK07429 phosphoribulokinase; Provisional
Probab=95.12  E-value=0.15  Score=29.19  Aligned_cols=117  Identities=20%  Similarity=0.204  Sum_probs=51.9

Q ss_pred             CCCE---EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC-HHHHHHH
Q ss_conf             9832---99983589874799999999998404861201388738068999998557873114430014510-3478899
Q gi|254780487|r    1 MKLR---LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTP-ASPHLAA   76 (217)
Q Consensus         1 M~~~---i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   76 (217)
                      |+++   |=||| +|++|||+++-.|.+.|.....--+......--|... +...+.  +..  .|-.+... ...|+.+
T Consensus         4 m~~rP~IIGIAG-gSGSGKTTv~r~I~~~fg~~~VtvI~~DdYhk~dr~~-r~~~~~--t~l--hP~And~dLl~e~L~~   77 (331)
T PRK07429          4 MPDRPVIIGVAG-DSGCGKSTFLRRLADLFGEELVTVICLDDYHSLDRKQ-RKEIGI--TAL--DPRANNFDLMYEQLKA   77 (331)
T ss_pred             CCCCCEEEEEEC-CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH-HHHCCC--CCC--CCCHHCHHHHHHHHHH
T ss_conf             999998999857-8877899999999998388877999478677788788-987189--878--9640059999999999


Q ss_pred             HHHHCCCHHH---H-------HHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf             9850235078---8-------64223288799922765556676753089999974794489705
Q gi|254780487|r   77 EIDGVIIDPA---T-------INPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCAR  131 (217)
Q Consensus        77 ~~~~~~i~~~---~-------~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~  131 (217)
                      ...+..+..-   +       ...-+..+++||||.-.++.+        ++...++..|.+-.+
T Consensus        78 Lk~Gk~I~~PvYdh~tg~~~~~~~I~P~~vIIvEGLh~L~~~--------~lR~l~DlKIFVD~d  134 (331)
T PRK07429         78 LKTGQPILKPIYNHETGKIDPPEYIKPNKIVVVEGLHPLYDE--------RVRDLYDFKVYLDPP  134 (331)
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCHHCCCH--------HHHHHCCEEEEECCC
T ss_conf             985997256523564787788666068867999161212879--------899754937996487


No 134
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.09  E-value=0.046  Score=32.36  Aligned_cols=117  Identities=22%  Similarity=0.220  Sum_probs=51.6

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCC-EE----CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHH-HHHHHHH
Q ss_conf             999835898747999999999984048612-01----38873806899999855787311443001451034-7889998
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKP-IQ----SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPAS-PHLAAEI   78 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP-v~----~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   78 (217)
                      |=|||. |++|||+++-.|.+.+....-.+ |+    .|... .+......-.  .....  .|..|....- .++..-.
T Consensus         2 IGIaG~-sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f~~-~~~~l~~~~~--~~~~g--~P~afD~~ll~~~L~~Lk   75 (220)
T cd02025           2 IGIAGS-VAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY-PNKELIERGL--MDRKG--FPESYDMEALLKFLKDIK   75 (220)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC-CCHHHHHHHH--HHHCC--CCHHCCHHHHHHHHHHHH
T ss_conf             897889-98779999999999860026999489997878757-8522888646--65169--930215999999999997


Q ss_pred             HHC-CCH-HHHH-----------HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
Q ss_conf             502-350-7886-----------422328879992276555667675308999997479448970
Q gi|254780487|r   79 DGV-IID-PATI-----------NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCA  130 (217)
Q Consensus        79 ~~~-~i~-~~~~-----------~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~  130 (217)
                      .+. .+. ..|.           ......|++||||.--++.+...   ...+...++..+.+=+
T Consensus        76 ~G~~~V~~PvYd~~~~~r~~~~~~~i~~~~IiIvEGi~~L~~~~~~---~~~i~dl~D~kIfvD~  137 (220)
T cd02025          76 SGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNP---RLFVSDFFDFSIYVDA  137 (220)
T ss_pred             CCCCCEEEEECCCHHCCCCCCCEEEECCCCEEEEEEEEEECCCCCC---HHHHHHHCCEEEEECC
T ss_conf             5998534010121212578984287269986998323220165211---1456754657898079


No 135
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.03  E-value=0.098  Score=30.30  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=28.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             3299983589874799999999998404861201388
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      +-|-||||+   |||++|..+.+.|+..+++....|.
T Consensus       109 ~iIaVTGTn---GKTTTtsli~~iL~~~g~~~~~gGN  142 (438)
T PRK04663        109 PVIAITGSN---GKSTVTDLTGVMAKAAGVKVAVGGN  142 (438)
T ss_pred             CEEEEECCC---CHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             789994899---8289999999999828997068721


No 136
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.99  E-value=0.032  Score=33.32  Aligned_cols=34  Identities=21%  Similarity=0.188  Sum_probs=29.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             3299983589874799999999998404861201388
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      +.|-||||+   |||++|..+.+.|+..+++++..|.
T Consensus       111 ~~IaVTGTn---GKTTTtsli~~iL~~~g~~~~~~GN  144 (445)
T PRK04308        111 KVIAITGSN---GKTTVTSLVGYLCIKCGLDTVIAGN  144 (445)
T ss_pred             CEEEEECCC---CCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             579994899---8377999999999975996299850


No 137
>PRK13768 GTPase; Provisional
Probab=94.96  E-value=0.29  Score=27.36  Aligned_cols=146  Identities=14%  Similarity=0.081  Sum_probs=70.5

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC-------C--CCCCCHHH------HHHHHHCCCCCCCCCCCCC
Q ss_conf             9832999835898747999999999984048612013-------8--87380689------9999855787311443001
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS-------G--MYEETDSK------TIHRIGRIPKSHIIPEKWK   65 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~-------G--~~~~~D~~------~~~~~~~~~~~~~~~~~~~   65 (217)
                      |...++|.|+ .|+|||+.+.++-+.++..+.++...       -  .+.+.|..      .+..-.+..+.-..+    
T Consensus         1 M~~~~~ViGp-aGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIRd~i~~~dVM~~~~LGPNGali----   75 (253)
T PRK13768          1 MMYIVFFLGT-AGSGKTTLVGALSDWLEEQGYDVAIVNLDPAVEYLPYKPDIDVREYVSAREIMRKYGLGPNGALI----   75 (253)
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHH----
T ss_conf             9718999899-99988999999999999769975999789866589999886378617899999881989646899----


Q ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH----CCCEEEEECCCC-----C
Q ss_conf             4510347889998502350788642-23288799922765556676753089999974----794489705776-----5
Q gi|254780487|r   66 LRTPASPHLAAEIDGVIIDPATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDLIERW----QFPIILCARTSL-----G  135 (217)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dla~~l----~~~vILV~~~~~-----g  135 (217)
                              .+.+.-...+++...++ ..+.|++|+...|=+-- .....+...+...|    ..-++.+.++..     .
T Consensus        76 --------~~~e~l~~~~d~l~~~i~~~~~dY~i~D~PGQiEl-ft~~~~~~~i~~~L~~~~~~~~v~l~D~~~~~~~~~  146 (253)
T PRK13768         76 --------ASVDLLLTKAEEIKEEIERLDADYVLVDTPGQMEL-FAFRESGRYLVEKLSSGSKSLSVYLIDAVLAKDPSD  146 (253)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEE-EECCHHHHHHHHHHHCCCCEEEEEEECHHHHCCHHH
T ss_conf             --------99999999899999998515887599826874432-223407999999986368628999845056378879


Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             04579999999984799079999769
Q gi|254780487|r  136 TINHSLLSLETLRNRNINIIGIAFIG  161 (217)
Q Consensus       136 ~i~~~~l~~~~~~~~g~~i~GiIlN~  161 (217)
                      -++..+++...+-+.+++..- |+|+
T Consensus       147 fiS~~L~a~s~m~~l~lP~in-VlsK  171 (253)
T PRK13768        147 FVSLLLLALSVQLRLGLPQIP-VLNK  171 (253)
T ss_pred             HHHHHHHHHHHHHHCCCCEEE-EEEH
T ss_conf             999999999999973999799-8676


No 138
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=94.91  E-value=0.3  Score=27.29  Aligned_cols=113  Identities=19%  Similarity=0.137  Sum_probs=61.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE----------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CHH
Q ss_conf             3299983589874799999999998404861201----------38873806899999855787311443001451-034
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ----------SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRT-PAS   71 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~----------~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~   71 (217)
                      .+|=|||+ +|+||++..-.|++.++..+.| |+          +|.--=.|-..+...+..+.-...+.+..-.. ..+
T Consensus        30 ~~iGiTG~-PGaGKStli~~l~~~~~~~g~~-vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~srg~lGGls  107 (267)
T pfam03308        30 HRVGITGV-PGAGKSTLIEALGMELRRRGHR-VAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSPSRGALGGLS  107 (267)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf             59987689-9887999999999999968986-899997899988886300107777650589985886457788888714


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf             7889998502350788642232887999227655566767530899999747944897057
Q gi|254780487|r   72 PHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART  132 (217)
Q Consensus        72 ~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~  132 (217)
                      ..        ..+.....-..++|++|||.+|=       +.+-.+++..-+.-+++..+.
T Consensus       108 ~~--------t~~~i~lleaaGfD~IivETVGV-------GQsE~~v~~~aD~~llv~~Pg  153 (267)
T pfam03308       108 RA--------TREAILLLDAAGFDVIIIETVGV-------GQSEVDIANMADTFVLVTIPG  153 (267)
T ss_pred             HH--------HHHHHHHHHHCCCCEEEEECCCC-------CCCCHHHHHHCCEEEEEECCC
T ss_conf             76--------99999999977999999924777-------753035554157689995588


No 139
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.91  E-value=0.19  Score=28.49  Aligned_cols=34  Identities=29%  Similarity=0.124  Sum_probs=28.8

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             3299983589874799999999998404861201388
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      |-|-||||+   |||++|..+.+.|+..+.+++..|.
T Consensus       123 ~iIaVTGTn---GKTTTt~li~~iL~~~g~~~~~~GN  156 (501)
T PRK02006        123 KVLAITGTN---GKTTTTSLTGLLCERAGKKVAVAGN  156 (501)
T ss_pred             CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             489993899---6687999999999976997465256


No 140
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.85  E-value=0.31  Score=27.18  Aligned_cols=144  Identities=19%  Similarity=0.216  Sum_probs=78.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             299983589874799999999998404861-2013887380689999985578731144300145103478899985023
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK-PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI   82 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (217)
                      ++...|-++|+||++..+-++..+..++ | -..+|  +++-.+.-.++-.......  +.+.+....-......     
T Consensus        91 S~iLlgGePGIGKSTLlLQ~a~~la~~~-~vLYvSG--EES~~Qik~RA~RLg~~~~--~l~l~~et~l~~Il~~-----  160 (454)
T PRK11823         91 SVVLIGGDPGIGKSTLLLQVAAALAAGG-KVLYVSG--EESLQQIKLRAERLGLPSD--NLYLLAETNLEDILAT-----  160 (454)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEECC--CHHHHHHHHHHHHHCCCCC--CCEEEECCCHHHHHHH-----
T ss_conf             4899507998889999999999985599-5799815--0157899999997588888--7378853689999999-----


Q ss_pred             CHHHHHHHHHHCCEEEEECCCCCCCCCCCC------------CCHHHHHHHHCCCEEEEECC-CCCHH------HHHHHH
Q ss_conf             507886422328879992276555667675------------30899999747944897057-76504------579999
Q gi|254780487|r   83 IDPATINPPDINDSIIIEGIGGLLVPLTTE------------YLFIDLIERWQFPIILCART-SLGTI------NHSLLS  143 (217)
Q Consensus        83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~------------~~~~dla~~l~~~vILV~~~-~~g~i------~~~~l~  143 (217)
                          .  ...+.|++||+..=-++++....            ....++||..+.+++||+.. +.|.+      .|-.-+
T Consensus       161 ----i--~~~~P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG~iAGPkvLEHmVDt  234 (454)
T PRK11823        161 ----I--EEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELTRLAKQSGIAVFLVGHVTKEGAIAGPRVLEHMVDT  234 (454)
T ss_pred             ----H--HHHCCCEEEEECHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHCE
T ss_conf             ----9--8609988999431115415667789978999999999999997449828999977267764661452220104


Q ss_pred             HHHHH---HCCCEEEEEEECCCC
Q ss_conf             99998---479907999976977
Q gi|254780487|r  144 LETLR---NRNINIIGIAFIGDS  163 (217)
Q Consensus       144 ~~~~~---~~g~~i~GiIlN~~~  163 (217)
                      +-+++   ....++.=.+=|+..
T Consensus       235 Vl~fEGd~~~~~RiLR~~KNRFG  257 (454)
T PRK11823        235 VLYFEGDRHSRFRILRAVKNRFG  257 (454)
T ss_pred             EEEECCCCCCCCEEEEEECCCCC
T ss_conf             68751576655024563124677


No 141
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.82  E-value=0.039  Score=32.77  Aligned_cols=34  Identities=35%  Similarity=0.375  Sum_probs=29.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             3299983589874799999999998404861201388
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      +-|-||||+   |||++|..+.+.|+..+.+++..|.
T Consensus       118 ~~IaVTGTn---GKTTttsli~~iL~~~g~~~~~~GN  151 (487)
T PRK03369        118 RWLVVTGTN---GKTTTTSMLHAMLRAAGRRSVLCGN  151 (487)
T ss_pred             CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             559997988---7278999999999858998599813


No 142
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.80  E-value=0.041  Score=32.69  Aligned_cols=32  Identities=28%  Similarity=0.411  Sum_probs=28.5

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             99983589874799999999998404861201388
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      |-||||+   |||++|..+.+.|+..|++++..|.
T Consensus       126 IaVTGTn---GKTTTtsli~~iL~~~g~~~~~~GN  157 (476)
T PRK00141        126 LAVTGTN---GKTTTTAMLAAMMQAGGFAAVAVGN  157 (476)
T ss_pred             EEEECCC---CHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             8896899---6798999999999837997289950


No 143
>PRK05480 uridine kinase; Provisional
Probab=94.78  E-value=0.043  Score=32.51  Aligned_cols=28  Identities=36%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             CCCEE--EEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             98329--998358987479999999999840
Q gi|254780487|r    1 MKLRL--VIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         1 M~~~i--~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      |++.+  -|+|. |++|||+++-.|...|+.
T Consensus         3 ~k~P~iIgIaG~-SgSGKTT~a~~L~~~l~~   32 (209)
T PRK05480          3 MKQPIIIGIAGG-SGSGKTTVASTIYEELGD   32 (209)
T ss_pred             CCCCEEEEEECC-CCCCHHHHHHHHHHHCCC
T ss_conf             889889999899-977899999999998086


No 144
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family; InterPro: IPR005700    The bacterial exopolysaccharide transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed at least seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.; GO: 0015542 sugar efflux transmembrane transporter activity, 0006859 extracellular carbohydrate transport.
Probab=94.78  E-value=0.32  Score=27.07  Aligned_cols=154  Identities=14%  Similarity=0.103  Sum_probs=85.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCC----------CCCEEC---------CCCC--CCHHHHHHHHHCCCCC-CCCC
Q ss_conf             2999835898747999999999984048----------612013---------8873--8068999998557873-1144
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYY----------WKPIQS---------GMYE--ETDSKTIHRIGRIPKS-HIIP   61 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~----------~KPv~~---------G~~~--~~D~~~~~~~~~~~~~-~~~~   61 (217)
                      -+-+++..+++||+.|+..+.+.+-.++          -||-.+         |..+  -+...+...+.....+ ...+
T Consensus       563 vv~~~~p~p~~Gks~i~an~aaliA~ggkR~llidad~rk~~l~q~~~~~~~~GL~d~LaG~rs~~~~~~~~~~~~l~~l  642 (778)
T TIGR01005       563 VVALASPLPDVGKSIIEANLAALIAAGGKRVLLIDADIRKAALSQILVKAEKSGLLDLLAGERSLELDVKAEVAAKLDIL  642 (778)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf             58856888866568899999999832687178732677605556442147888537556424656630340236771123


Q ss_pred             C-C--CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEE-EEECCCCCHH
Q ss_conf             3-0--0145103478899985023507886422328879992276555667675308999997479448-9705776504
Q gi|254780487|r   62 E-K--WKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPII-LCARTSLGTI  137 (217)
Q Consensus        62 ~-~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vI-LV~~~~~g~i  137 (217)
                      . .  ..+.+..+..++..    ............+|+++|.-+-=      ..--....+..+-.-+. ||+..+...+
T Consensus       643 ~~GGas~~~h~~~eLLasp----a~~~l~~~ar~~~D~vvvd~~~~------~pV~d~~a~a~la~~~lslvt~~~r~~~  712 (778)
T TIGR01005       643 DAGGASLLRHNSSELLASP----AMVELVENARSAYDLVVVDVAAV------APVADAKALAALADLVLSLVTEYDRSVV  712 (778)
T ss_pred             HCCCCCCCCCCCCHHHCCH----HHHHHHHHHHHHCCEEEECCCHH------HHHHHHHHHHHCCCEEEHHEEEECCEEH
T ss_conf             3476124788841532166----88999998865188577455312------4899999974224200200111144104


Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCH
Q ss_conf             579999999984799079999769778005
Q gi|254780487|r  138 NHSLLSLETLRNRNINIIGIAFIGDSMPKV  167 (217)
Q Consensus       138 ~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~  167 (217)
                      ...--.++-+...|.++.|||||.-.+.+.
T Consensus       713 ~~~r~~~~~~~~~n~~v~gV~ln~ldpn~~  742 (778)
T TIGR01005       713 ELVRELLKSLSRLNSEVLGVVLNKLDPNEL  742 (778)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEECCCCCCCH
T ss_conf             442887754453186045665045575201


No 145
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=94.69  E-value=0.33  Score=26.94  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=62.0

Q ss_pred             CCCCCCCCHHHHHHHHCCCEEE--------------------------------EECCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf             6676753089999974794489--------------------------------70577650457999999998479907
Q gi|254780487|r  107 VPLTTEYLFIDLIERWQFPIIL--------------------------------CARTSLGTINHSLLSLETLRNRNINI  154 (217)
Q Consensus       107 ~~~~~~~~~~dla~~l~~~vIL--------------------------------V~~~~~g~i~~~~l~~~~~~~~g~~i  154 (217)
                      .|....-+..|+++.|++.++-                                |++   |--++.+++.-.....+.++
T Consensus       212 ~p~L~aPrV~DIa~~L~A~vL~g~e~ldR~V~~vvV~Am~v~N~L~~L~~GsLVITP---GDRsDIil~~~~a~~~~~~~  288 (702)
T PRK05632        212 SPDLIAPRVIDIAKHLGATVINGGDLLTRRVRSVTVCARSIPNMLEHLKPGSLVVTP---GDRSDVILAACLAAMNGVPI  288 (702)
T ss_pred             CCCCCCCCHHHHHHHHCCEEECCCCHHCCEEEEEEEEEEECHHHHHCCCCCCEEECC---CCHHHHHHHHHHHHCCCCCE
T ss_conf             600278829999998398996575210246504999970055556106899579816---85789999999984169980


Q ss_pred             EEEEECCCCCC--CHHHHHHHH--CCCCEEEE-----------------ECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99997697780--059999986--19989999-----------------478888888799999997133999999999
Q gi|254780487|r  155 IGIAFIGDSMP--KVEETIVKI--GRIPHLGR-----------------LPKIDPIDPDVLHQKFQEHFTQSLLQKYFY  212 (217)
Q Consensus       155 ~GiIlN~~~~~--~~~~~le~~--~~ipvLG~-----------------iP~~~~~~~~~l~~~~~~~~~~~~l~~~~~  212 (217)
                      .|+++++...+  ...+.++.+  +++|||-+                 ||..+.-..+..-..+++|++...|.....
T Consensus       289 agi~ltgg~~~~~~i~~l~~~~~~~~lpil~~~~~t~~ta~~l~~~~~~i~~~~~~ki~~~~~~~~~~vd~~~l~~~~~  367 (702)
T PRK05632        289 AGLLLTGGYEPDPRIAKLCEGAFETGLPILSVDTNTYQTALRLQSFNLEVPVDDHERIETVLELVASHVDTDWLESRLA  367 (702)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf             5999618989878999999864238988799568769999999745787898989999999999997379999999865


No 146
>PRK13695 putative NTPase; Provisional
Probab=94.68  E-value=0.048  Score=32.22  Aligned_cols=28  Identities=32%  Similarity=0.447  Sum_probs=24.3

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             98329998358987479999999999840
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      |+++|||||- +|||||++..-++..|+.
T Consensus         2 ~~~kI~iTG~-PGvGKTTli~Kv~~~L~~   29 (174)
T PRK13695          2 AALRIGITGM-PGVGKTTLVLKIAELLAR   29 (174)
T ss_pred             CCCEEEEECC-CCCCHHHHHHHHHHHHHH
T ss_conf             8429998789-998899999999999863


No 147
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.68  E-value=0.23  Score=27.91  Aligned_cols=130  Identities=16%  Similarity=0.241  Sum_probs=66.2

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHC-CCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             8329998358987479999999999840-486120138873806899999855787311443001451034788999850
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNA-YYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG   80 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~-~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (217)
                      .|-+||+|- +.+|||..+-.|+..... .+|  ++|+.+-|.+  .-.++.......  +..|  .....|.       
T Consensus         1 gmi~LVtGG-~rSGKS~~AE~la~~~~~~~~Y--iAT~~~~D~E--m~~RI~~Hr~~R--~~~w--~TiE~p~-------   64 (170)
T PRK05800          1 GMLILVTGG-ARSGKSRFAERLAAQSGLQVLY--IATAQPLDDE--MAARIAHHRQRR--PAHW--QTVEEPL-------   64 (170)
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHHCCCCEEE--EECCCCCCHH--HHHHHHHHHHCC--CCCC--EEEECCC-------
T ss_conf             989999798-7634899999999856998299--9758888878--999999999737--8995--7996466-------


Q ss_pred             CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH----------HHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHHHH
Q ss_conf             23507886422328879992276555667675308----------9999974794489705-77650457999999998
Q gi|254780487|r   81 VIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLF----------IDLIERWQFPIILCAR-TSLGTINHSLLSLETLR  148 (217)
Q Consensus        81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~----------~dla~~l~~~vILV~~-~~~g~i~~~~l~~~~~~  148 (217)
                       .+...........|++|||..+.+..........          .+..+....++|+|++ .+.|.+-...++-.+.+
T Consensus        65 -~l~~~l~~~~~~~~~vLlDclt~wl~N~l~~~~~~~~~~~~~~ll~~l~~~~~~~ViVsnEVG~Givp~~~~~R~frd  142 (170)
T PRK05800         65 -DLAELLRADAAPGRCVLVDCLTTWVTNLLFEDGEEAIAAEIEALLAALQRLPAKIILVSNEVGMGIVPEYRLGRRFRD  142 (170)
T ss_pred             -CHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             -789999874577886872267899999875023667999999999999827997899977867778899879999999


No 148
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=94.65  E-value=0.091  Score=30.49  Aligned_cols=108  Identities=21%  Similarity=0.290  Sum_probs=66.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCEECCC-CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH-HHH
Q ss_conf             89874799999999998404861201388-7380689999985578731144300145103478899985023507-886
Q gi|254780487|r   11 DTSVGKTIFASALVHALNAYYWKPIQSGM-YEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDP-ATI   88 (217)
Q Consensus        11 ~t~vGKT~vs~~L~~~l~~~~~KPv~~G~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~   88 (217)
                      +.|+|||+.---++..++..+=-.|-.|- .-..|+..+++...        ......+-...|+.|..=.-.++. ...
T Consensus        42 spGSGKT~LiEk~~~~~~~~~K~Avi~GD~~t~~DA~RlR~~G~--------~a~~~nTGk~CHLdA~mv~G~~~~L~~~  113 (225)
T TIGR00073        42 SPGSGKTTLIEKLIERLDDEVKIAVIEGDVQTKNDADRLRKYGV--------PAIQINTGKECHLDAHMVAGAIHALKDL  113 (225)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCC--------EEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             88611589999999984578978999755322556999986498--------6886368864440166786587554216


Q ss_pred             HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf             422328879992276555667675308999997479448970577
Q gi|254780487|r   89 NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTS  133 (217)
Q Consensus        89 ~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~  133 (217)
                      .+.+..|+++||=+|-+-+|..+++=-..       .|++++-..
T Consensus       114 ~ld~~~DlL~IENVGNLvCP~~FdLGe~~-------rVvllSVTE  151 (225)
T TIGR00073       114 PLDDISDLLLIENVGNLVCPADFDLGEHM-------RVVLLSVTE  151 (225)
T ss_pred             CCCCCCCEEEEEECCCCEECCCCCCCCCC-------EEEEEEECC
T ss_conf             88871462688644761006731123563-------079998658


No 149
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.59  E-value=0.041  Score=32.67  Aligned_cols=32  Identities=31%  Similarity=0.375  Sum_probs=28.5

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             99983589874799999999998404861201388
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      |-||||+   |||++|..+.+.|+..++|++..|.
T Consensus       125 IaVTGTn---GKTTTtsli~~iL~~~g~~~~~~GN  156 (481)
T PRK01438        125 LAVTGTN---GKTTTVQMLASILRAAGLRAAAVGN  156 (481)
T ss_pred             EEEECCC---CCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9993899---7460999999999966997079962


No 150
>TIGR00235 udk uridine kinase; InterPro: IPR000764   Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction:  ATP + Uridine = ADP + UMP  A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=94.57  E-value=0.032  Score=33.36  Aligned_cols=159  Identities=18%  Similarity=0.171  Sum_probs=77.7

Q ss_pred             EEEECCCCCCCH----HHHHHHHHHHHHC-----------CCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             999835898747----9999999999840-----------4861201388738068999998557873114430014510
Q gi|254780487|r    5 LVIVGTDTSVGK----TIFASALVHALNA-----------YYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTP   69 (217)
Q Consensus         5 i~I~GT~t~vGK----T~vs~~L~~~l~~-----------~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~   69 (217)
                      |=|+|. |+|||    |+|+.-|+..++.           .||||..-+.        ...........++|+.+-. .-
T Consensus        13 igI~Gg-SgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~--------~~~~~r~~~NfDHP~AfD~-~L   82 (220)
T TIGR00235        13 IGISGG-SGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSD--------LEMAERKKTNFDHPDAFDN-DL   82 (220)
T ss_pred             EEECCC-CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC--------HHHHHHHCCCCCCCHHCCH-HH
T ss_conf             970176-6101567899999999998314001457750324458898873--------1246431258898003037-99


Q ss_pred             HHHHHHHHHHHCCCHH---HH---HH-H-----HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf             3478899985023507---88---64-2-----23288799922765556676753089999974794489705776504
Q gi|254780487|r   70 ASPHLAAEIDGVIIDP---AT---IN-P-----PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTI  137 (217)
Q Consensus        70 ~~~~~~~~~~~~~i~~---~~---~~-~-----~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i  137 (217)
                      ...|+.....+..++.   .|   .+ .     -...++||+||.+-+.+        .++....++.+.+=++.+.- +
T Consensus        83 l~~Hl~nLk~g~~~~~P~Ydyv~HtRv~~eT~~~~P~~VvIlEGi~~l~D--------~Rl~~L~dlkifvDt~~D~r-l  153 (220)
T TIGR00235        83 LYEHLKNLKNGSAIDVPVYDYVNHTRVKKETVHVEPKDVVILEGILLLTD--------ERLRDLMDLKIFVDTPLDIR-L  153 (220)
T ss_pred             HHHHHHHHHCCCEECCCCCCCCCEECCCCCCEEECCEEEEEEECCHHHHH--------HHHHHHHCCEEEEECCCHHH-H
T ss_conf             99999998468802245425410020255626873506899706188887--------99988718236774683032-5


Q ss_pred             HHHHHHHHHHHHCCCEEEEEEEC--CCCCCCHHHHHHHHCC-CCEEEEECCC
Q ss_conf             57999999998479907999976--9778005999998619-9899994788
Q gi|254780487|r  138 NHSLLSLETLRNRNINIIGIAFI--GDSMPKVEETIVKIGR-IPHLGRLPKI  186 (217)
Q Consensus       138 ~~~~l~~~~~~~~g~~i~GiIlN--~~~~~~~~~~le~~~~-ipvLG~iP~~  186 (217)
                      -.=+-  .=...||=++-+||--  ..-.|.+...+|...+ .=+  +||+-
T Consensus       154 iRRl~--RD~~~RGR~~dSvI~Qy~~~V~Pm~~~FvEP~K~~AD~--IiP~g  201 (220)
T TIGR00235       154 IRRLE--RDIEERGRSLDSVIDQYRKTVRPMYLQFVEPTKQYADL--IIPEG  201 (220)
T ss_pred             HHHHH--HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCE--EECCC
T ss_conf             65656--55754289788999999985346210145501014667--62589


No 151
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.51  E-value=0.086  Score=30.63  Aligned_cols=35  Identities=31%  Similarity=0.363  Sum_probs=29.0

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             83299983589874799999999998404861201388
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      .+-+-||||+   |||++|..+.+.|+..|++....|.
T Consensus       110 ~p~vaITGTN---GKTTTTsli~~~l~~~G~~~~lgGN  144 (448)
T COG0771         110 APIVAITGTN---GKTTTTSLIAHLLKAAGLDALLGGN  144 (448)
T ss_pred             CCEEEEECCC---CHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf             9989997999---6288999999999855998321351


No 152
>PRK08006 replicative DNA helicase; Provisional
Probab=94.50  E-value=0.37  Score=26.66  Aligned_cols=25  Identities=40%  Similarity=0.522  Sum_probs=21.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             3299983589874799999999998
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      ..++|.|-.+++|||+.++.+++..
T Consensus       224 G~LiviaaRPsmGKTalalnia~~~  248 (471)
T PRK08006        224 SDLIIVAARPSMGKTTFAMNLCENA  248 (471)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             7389999469987699999999999


No 153
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.47  E-value=0.21  Score=28.28  Aligned_cols=34  Identities=18%  Similarity=0.124  Sum_probs=28.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             3299983589874799999999998404861201388
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      +-|-||||+   |||++|..+.+.|+..+++....|.
T Consensus       106 ~iIaVTGTn---GKTTTt~li~~iL~~~g~~~~~gGN  139 (438)
T PRK03806        106 PIVAITGSN---GKSTVTTLVGEMAKAAGVNVGVGGN  139 (438)
T ss_pred             CEEEEECCC---CCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             889994899---8489999999999865997567715


No 154
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=94.44  E-value=0.24  Score=27.90  Aligned_cols=32  Identities=28%  Similarity=0.346  Sum_probs=23.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             329998358987479999999999840486120
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      +.+|++| .+|+|||+++..+...+..+++..|
T Consensus        13 kai~laG-~pGAGKS~~~~~~~~~~~~~~~v~I   44 (191)
T pfam06414        13 VAVLLGG-QPGAGKTELARALLEELGGGNVVRI   44 (191)
T ss_pred             EEEEEEC-CCCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf             7999957-9988889999999875378993897


No 155
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.43  E-value=0.033  Score=33.26  Aligned_cols=21  Identities=38%  Similarity=0.536  Sum_probs=18.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHH
Q ss_conf             3299983589874799999999
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALV   24 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~   24 (217)
                      +.|.|||| +|+|||++|-.|.
T Consensus         1 m~I~ITGT-PGvGKTT~~~~L~   21 (180)
T COG1936           1 MLIAITGT-PGVGKTTVCKLLR   21 (180)
T ss_pred             CEEEEECC-CCCCHHHHHHHHH
T ss_conf             93799379-9986687999999


No 156
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.42  E-value=0.39  Score=26.55  Aligned_cols=111  Identities=18%  Similarity=0.199  Sum_probs=55.3

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             32999835898747999999999984048612013887380689999985578731144300145103478899985023
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI   82 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (217)
                      +.+|+.|. ||+|||+.+.++++.+-..|+.-+-.    .. ..++..+....          +...            .
T Consensus       184 ~nLlf~G~-~G~GKTfLa~~IA~ell~~g~sViy~----ta-~~L~~~l~~~~----------~~~~------------~  235 (330)
T PRK06835        184 ENLLFYGN-TGTGKTFLSNCIAKELLDRGKTVIYR----TS-DELIENLREIR----------FNND------------N  235 (330)
T ss_pred             CCEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEE----EH-HHHHHHHHHHH----------CCCC------------C
T ss_conf             86698899-99988999999999999879949996----29-99999999975----------4576------------4


Q ss_pred             CHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH--H-HCCCEEEEECCCCCHHHHHH
Q ss_conf             50788642232887999227655566767530899999--7-47944897057765045799
Q gi|254780487|r   83 IDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE--R-WQFPIILCARTSLGTINHSL  141 (217)
Q Consensus        83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~--~-l~~~vILV~~~~~g~i~~~~  141 (217)
                      -.......-..+|++||.-.|--...........++.-  . -+.|+|+-++.....+...+
T Consensus       236 ~~~~~~~~l~~~DLLIIDDLG~E~~t~~~~~~Lf~iIN~R~~~~k~tIITTNl~~~eL~~~y  297 (330)
T PRK06835        236 DAPELEDLLINCDLLIIDDLGTESITEFSKTELFNLINKRLLMNKKMIISTNLSLEELLKTY  297 (330)
T ss_pred             CHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
T ss_conf             48999999961898997210345588689999999999998679997998899989999987


No 157
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.40  E-value=0.13  Score=29.51  Aligned_cols=92  Identities=25%  Similarity=0.343  Sum_probs=55.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCEECCCC-CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf             5898747999999999984048612013887-380689999985578731144300145103478899985023507886
Q gi|254780487|r   10 TDTSVGKTIFASALVHALNAYYWKPIQSGMY-EETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDPATI   88 (217)
Q Consensus        10 T~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~-~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   88 (217)
                      .++|+|||++-...++.|+..+--.|--|-. -+.|+..++...-   +..     ...+....|+.+..    +..++.
T Consensus       111 sSPGSGKTtLLe~ti~~L~~~~~~aVIeGD~~T~~DA~RI~~~Gv---~av-----QInTG~~CHLDA~M----V~~al~  178 (290)
T PRK10463        111 SSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGT---PAI-----QVNTGKGCHLDAQM----IADAAP  178 (290)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCC---CEE-----EECCCCCCCCCHHH----HHHHHH
T ss_conf             699878899999999987336757999604235667999997699---589-----95479976759999----999998


Q ss_pred             HHH-HHCCEEEEECCCCCCCCCCCCC
Q ss_conf             422-3288799922765556676753
Q gi|254780487|r   89 NPP-DINDSIIIEGIGGLLVPLTTEY  113 (217)
Q Consensus        89 ~~~-~~~D~viIEGagg~~~~~~~~~  113 (217)
                      .+. ...|+++||-+|.+..|..+++
T Consensus       179 ~l~l~~~dllfIENVGNLVCPA~FDL  204 (290)
T PRK10463        179 RLPLDDNGILFIENVGNLVCPASFDL  204 (290)
T ss_pred             HCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf             48987798999812788435512036


No 158
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001    This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=94.39  E-value=0.077  Score=30.94  Aligned_cols=60  Identities=25%  Similarity=0.273  Sum_probs=36.5

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCC-CCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             9998358987479999999999840486-120138873806899999855787311443001
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYW-KPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWK   65 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~-KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~   65 (217)
                      |.|.|+ .|+|||+|+..|++-|..-|= -++.-|-.=.+-+-.-+...+.+.+..+.-||.
T Consensus         1 ~VlmGv-aG~GKs~~a~~l~~~lg~iyPd~~yieGDdLHP~~Ni~KMs~GiPL~DdDR~pWL   61 (175)
T TIGR01313         1 FVLMGV-AGSGKSTIASALAHRLGDIYPDAKYIEGDDLHPAANIEKMSRGIPLNDDDRWPWL   61 (175)
T ss_pred             CEEECC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHH
T ss_conf             967602-7862889999999985431578875688666787779873178888701204379


No 159
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.35  E-value=0.047  Score=32.31  Aligned_cols=31  Identities=35%  Similarity=0.463  Sum_probs=27.5

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             98329998358987479999999999840486
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      |+++||..|- +|+|||+|.-.|++.++..++
T Consensus         1 M~~~I~LiG~-mGsGKstiGk~LA~~L~~~fi   31 (172)
T PRK03731          1 MTQPLFLVGP-RGCGKTTVGMALAQALGYRFV   31 (172)
T ss_pred             CCCCEEEECC-CCCCHHHHHHHHHHHHCCCEE
T ss_conf             9998899889-999889999999998599979


No 160
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.34  E-value=0.056  Score=31.81  Aligned_cols=34  Identities=26%  Similarity=0.301  Sum_probs=29.3

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             3299983589874799999999998404861201388
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      +-|-||||+   |||++|..+.+.|+..++++...|.
T Consensus       105 ~~IaITGTn---GKTTTt~li~~iL~~~g~~~~~~GN  138 (450)
T PRK01368        105 KFIAITGTN---GKSTTTALISHILNSNGLDYPVAGN  138 (450)
T ss_pred             CEEEEECCC---CCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             779996899---9748999999999975996289625


No 161
>PRK08233 hypothetical protein; Provisional
Probab=94.33  E-value=0.24  Score=27.86  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             2999835898747999999999984
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      -|=|+|- |++|||+++-.|...+.
T Consensus         5 IIgIaGg-SgSGKTtla~~l~~~l~   28 (182)
T PRK08233          5 IITIAAV-SGGGKTTLTERLTHKLK   28 (182)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHCC
T ss_conf             9999688-86789999999999746


No 162
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=94.25  E-value=0.42  Score=26.32  Aligned_cols=144  Identities=15%  Similarity=0.128  Sum_probs=66.6

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHCCCCCCEEC-------CC--CCCCHHH---HHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             9835898747999999999984048612013-------88--7380689---9999855787311443001451034788
Q gi|254780487|r    7 IVGTDTSVGKTIFASALVHALNAYYWKPIQS-------GM--YEETDSK---TIHRIGRIPKSHIIPEKWKLRTPASPHL   74 (217)
Q Consensus         7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~-------G~--~~~~D~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (217)
                      |.|+ .|+|||+.+.++.+.++..+.++...       ..  +.+.|..   ...+....         +.+-+.-+--.
T Consensus         1 ViGp-aGSGKTT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIrd~i~~~dvM~~---------~~LGPNGali~   70 (234)
T pfam03029         1 VVGG-AGSGKTTFVGALSEILPLRGRSVYVVNLDPAAENLPYEADIDIRELITVADVMED---------YGLGPNGALTV   70 (234)
T ss_pred             CCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHH---------CCCCCCHHHHH
T ss_conf             9898-9898899999999999977997599978986658999877717874679999998---------29897389999


Q ss_pred             HHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH---CCCEEEEECCCC-----CHHHHHHHHHHH
Q ss_conf             999850235078864223288799922765556676753089999974---794489705776-----504579999999
Q gi|254780487|r   75 AAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERW---QFPIILCARTSL-----GTINHSLLSLET  146 (217)
Q Consensus        75 ~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l---~~~vILV~~~~~-----g~i~~~~l~~~~  146 (217)
                      +.+.-...+++....+....|++|+...|=+.- .....+...+...|   +.-++.++++..     .-++..+++...
T Consensus        71 ~me~l~~~~d~l~~~l~~~~~y~l~DtPGQiEl-f~~~~~~~~i~~~L~~~~~~~v~l~D~~~~~d~~~fis~~L~a~s~  149 (234)
T pfam03029        71 AMDFGRITLDWLLEELEYEDDYYLFDTPGQIEL-FTHWDSLARGVEALEASRLGAVYLVDTRRLTDPIDFFSGLLYALSI  149 (234)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEE-EECCHHHHHHHHHHHCCCEEEEEEECHHHHCCHHHHHHHHHHHHHH
T ss_conf             999999999999998525577699836983576-5400269999999712873899984257746888899999999999


Q ss_pred             HHHCCCEEEEEEECCC
Q ss_conf             9847990799997697
Q gi|254780487|r  147 LRNRNINIIGIAFIGD  162 (217)
Q Consensus       147 ~~~~g~~i~GiIlN~~  162 (217)
                      +-+.+++..- ++|+.
T Consensus       150 m~~l~lP~vn-vlsK~  164 (234)
T pfam03029       150 MLRLGLPFVV-ALNKF  164 (234)
T ss_pred             HHHCCCCEEE-EECCH
T ss_conf             9974899443-10004


No 163
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=94.18  E-value=0.36  Score=26.77  Aligned_cols=32  Identities=16%  Similarity=0.160  Sum_probs=26.5

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             32999835898747999999999984048612
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKP   34 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP   34 (217)
                      |-|-|+-=.-|||||+++.-|+++|-..|+|-
T Consensus       122 kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RV  153 (405)
T PRK13869        122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRV  153 (405)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf             28999788877659999999999999779988


No 164
>PRK08118 topology modulation protein; Reviewed
Probab=94.14  E-value=0.062  Score=31.54  Aligned_cols=27  Identities=33%  Similarity=0.628  Sum_probs=22.7

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             98329998358987479999999999840
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      |. +|.|.|+ +|+|||+.+-.|.+.+..
T Consensus         1 M~-rI~IiG~-~GsGKSTlAr~L~~~~~i   27 (167)
T PRK08118          1 MK-KIILIGS-GGSGKSTLARQLGEKLNI   27 (167)
T ss_pred             CC-EEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf             96-7999889-998799999999998896


No 165
>PRK08840 replicative DNA helicase; Provisional
Probab=94.13  E-value=0.44  Score=26.17  Aligned_cols=33  Identities=36%  Similarity=0.433  Sum_probs=23.5

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             299983589874799999999998404861201
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ   36 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~   36 (217)
                      .++|.|-.+++|||+.++.+++..-...-|||.
T Consensus       218 ~LiviaaRPsmGKTalalnia~n~a~~~~~~v~  250 (464)
T PRK08840        218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVL  250 (464)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             679998379873689999999999996599679


No 166
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=94.10  E-value=0.075  Score=31.02  Aligned_cols=31  Identities=23%  Similarity=0.364  Sum_probs=27.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             29998358987479999999999840486120
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      +++|+|. +|+|||+++-.|+..+...+++|+
T Consensus         2 ~v~i~G~-~~sGKttl~~~L~~~~~~~g~~~~   32 (122)
T pfam03205         2 IVLVVGP-KDSGKTTLIRKLLNYLKRRGYRVA   32 (122)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             7999948-999899999999999998799448


No 167
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=94.09  E-value=0.15  Score=29.17  Aligned_cols=30  Identities=30%  Similarity=0.367  Sum_probs=26.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             2999835898747999999999984048612
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKP   34 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP   34 (217)
                      .|.|+|+ .++||++.+-.|..++++.+=+|
T Consensus        84 IIgiaGs-vavGKST~ar~L~~ll~~~~~~~  113 (283)
T COG1072          84 IIGIAGS-VAVGKSTTARILQALLSRWPESP  113 (283)
T ss_pred             EEEECCC-CCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             9996057-66557789999999996388987


No 168
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.07  E-value=0.052  Score=32.01  Aligned_cols=29  Identities=34%  Similarity=0.464  Sum_probs=26.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             32999835898747999999999984048612
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKP   34 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP   34 (217)
                      +.|-||||+   |||++|..+.+.|+..+++|
T Consensus       109 ~~IaVtGTn---GKTTtT~ll~~il~~~g~~~  137 (459)
T PRK00421        109 TSIAVAGTH---GKTTTTSLLAHVLAEAGLDP  137 (459)
T ss_pred             CEEEEECCC---CCCHHHHHHHHHHHHCCCCC
T ss_conf             649997788---86118999999999769987


No 169
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.05  E-value=0.084  Score=30.72  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=27.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             329998358987479999999999840486120138
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG   38 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G   38 (217)
                      +-|-||||+   |||++|..+.+.|+..+++.+..|
T Consensus       115 ~iIaVTGTn---GKTTTtsli~~iL~~~g~~~~~gG  147 (457)
T PRK01390        115 PFIAITGTN---GKSTTTALIAHLLRQAGRDVQMGG  147 (457)
T ss_pred             CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             889992899---649899999999997399869966


No 170
>PRK08694 consensus
Probab=94.03  E-value=0.41  Score=26.37  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=25.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             299983589874799999999998404861201
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ   36 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~   36 (217)
                      .++|.|-.+++|||+.++-+++..-..+-+||.
T Consensus       219 ~LiVIaaRPsmGKTalalnia~~~a~~~~~~V~  251 (468)
T PRK08694        219 DLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVA  251 (468)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             479996178653789999999999984798479


No 171
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.97  E-value=0.088  Score=30.58  Aligned_cols=34  Identities=26%  Similarity=0.304  Sum_probs=28.3

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             3299983589874799999999998404861201388
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      |.|-||||+   |||++|..|.+-|+..++|.+..|.
T Consensus       116 k~IaVTGTN---GKTTTt~ll~~iL~~~g~~~~~~GN  149 (468)
T PRK04690        116 GAVCVTGTK---GKSTTTALLAHLLRAAGHRTALVGN  149 (468)
T ss_pred             CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             789996998---5899999999999857998289867


No 172
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=93.94  E-value=0.34  Score=26.90  Aligned_cols=27  Identities=41%  Similarity=0.497  Sum_probs=23.2

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             8329998358987479999999999840
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      .+.++|+|+ |.||||..+..|++.+..
T Consensus         3 ~~~i~I~GP-TAsGKT~lai~LAk~~~~   29 (308)
T COG0324           3 PKLIVIAGP-TASGKTALAIALAKRLGG   29 (308)
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHHCCC
T ss_conf             637999898-875778999999998299


No 173
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758   The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages:    (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer.    Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC)  and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales .    This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=93.77  E-value=0.067  Score=31.31  Aligned_cols=29  Identities=24%  Similarity=0.337  Sum_probs=25.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             32999835898747999999999984048612
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKP   34 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP   34 (217)
                      ..|-|||||   ||||+|+-|+..++..+.-|
T Consensus       109 ~~iaVaGtH---GKTTTTamia~~~~~aGLdP  137 (491)
T TIGR01082       109 ESIAVAGTH---GKTTTTAMIAVILKEAGLDP  137 (491)
T ss_pred             CEEEEECCC---CCHHHHHHHHHHHHHCCCCC
T ss_conf             707998368---72568999999998449997


No 174
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.76  E-value=0.11  Score=29.98  Aligned_cols=34  Identities=26%  Similarity=0.304  Sum_probs=28.7

Q ss_pred             CCC--EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             983--29998358987479999999999840486120
Q gi|254780487|r    1 MKL--RLVIVGTDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         1 M~~--~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      |.|  -|++||- +|+|||+++-.|.+.|+..+.+.+
T Consensus         1 ~~kg~viWltGl-sgSGKTTia~~l~~~L~~~~~~~~   36 (175)
T PRK00889          1 MQRGVTVWFTGL-SGAGKTTISHALAEKLRARGYPVE   36 (175)
T ss_pred             CCCCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             998889998898-999999999999999998699679


No 175
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.70  E-value=0.53  Score=25.67  Aligned_cols=23  Identities=30%  Similarity=0.587  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             29998358987479999999999
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHA   26 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~   26 (217)
                      .+.|.|-.+++|||+.++-++..
T Consensus       195 ~LiIiaARPsmGKTafalnia~n  217 (421)
T TIGR03600       195 DLIVIGARPSMGKTTLALNIAEN  217 (421)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHH
T ss_conf             68999854678745999999999


No 176
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.66  E-value=0.54  Score=25.63  Aligned_cols=120  Identities=15%  Similarity=0.125  Sum_probs=57.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE-ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             29998358987479999999999840486120-13887380689999985578731144300145103478899985023
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI-QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI   82 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv-~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (217)
                      ...|+|- +|+|||++++-++......+.|.+ -++  +.-.+..+.++.+.......-+...+. +.+.   .+. ...
T Consensus        25 itei~G~-pG~GKTtl~lq~a~~~~~~g~~vlYidt--E~~~~er~~qi~~~~~~~~~~~i~~~~-~~~~---~~~-~~~   96 (224)
T PRK09361         25 ITQIYGP-PGSGKTNICIQLAVEAARQGKKVIYIDT--EGLSPERFKQIAGEDFEELLSNIIIFE-PSSF---EEQ-REA   96 (224)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEECC--CCCCHHHHHHHHCCCHHHHHHCCEEEC-CCCH---HHH-HHH
T ss_conf             9999899-9985999999999999974990999678--767889999985657345420614724-7988---999-999


Q ss_pred             CHHHHHHHHHHCCEEEEECCCCCCCCCCCC----C----------CHHHHHHHHCCCEEEEEC
Q ss_conf             507886422328879992276555667675----3----------089999974794489705
Q gi|254780487|r   83 IDPATINPPDINDSIIIEGIGGLLVPLTTE----Y----------LFIDLIERWQFPIILCAR  131 (217)
Q Consensus        83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~----~----------~~~dla~~l~~~vILV~~  131 (217)
                      +.....-..++.+++||...-.++..-...    .          ...++|+..+.+|+++.-
T Consensus        97 i~~~~~~~~~~~~lvVIDSi~~~~~~e~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vvl~nq  159 (224)
T PRK09361         97 IQKAEKIAKENVGLIVLDSATSLYRLELDDNDNSKLNRELGKQISHLLSLARKHNIAVVITNQ  159 (224)
T ss_pred             HHHHHHHHHCCCCEEEEECCHHHEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             999998750587389996230100000145765899999999999999999971986999966


No 177
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.63  E-value=0.089  Score=30.56  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=25.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             299983589874799999999998404861201
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ   36 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~   36 (217)
                      +|.|+| .-|||||++++.|++.|...+.+ |.
T Consensus         1 kia~~G-KGGvGKtt~~~~la~~l~~~g~~-vl   31 (116)
T cd02034           1 KIAITG-KGGVGKTTIAALLARYLAEKGKP-VL   31 (116)
T ss_pred             CEEEEC-CCCCCHHHHHHHHHHHHHHCCCE-EE
T ss_conf             978988-99774999999999999978996-99


No 178
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=93.58  E-value=0.17  Score=28.82  Aligned_cols=129  Identities=19%  Similarity=0.245  Sum_probs=64.8

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             999835898747999999999984-0486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALN-AYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~-~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      |||+|- ..+|||..+--|+..+. ..+|  ++|+.+.|.  ..-.++.......  +..|  .....|...        
T Consensus         1 iLVtGG-~rSGKS~~AE~la~~~~~~~~Y--iAT~~~~D~--Em~~RI~~Hr~~R--~~~w--~tiE~~~~l--------   63 (166)
T pfam02283         1 ILVTGG-ARSGKSRFAERLALASGGPVVY--IATAQAFDD--EMAERIARHRARR--PAGW--TTIEEPLDL--------   63 (166)
T ss_pred             CEEECC-CCCCHHHHHHHHHHHCCCCEEE--EECCCCCCH--HHHHHHHHHHHCC--CCCC--EEEECCCCH--------
T ss_conf             988688-7733899999999855998199--976988888--9999999999718--9996--799774459--------


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCC--------CH---HHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHHHHHCC
Q ss_conf             078864223288799922765556676753--------08---9999974794489705-77650457999999998479
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLLVPLTTEY--------LF---IDLIERWQFPIILCAR-TSLGTINHSLLSLETLRNRN  151 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~--------~~---~dla~~l~~~vILV~~-~~~g~i~~~~l~~~~~~~~g  151 (217)
                      ...... ....+.+|||..+.+........        ..   .+..+....++|+|++ .+.|.+-...++-.+.+..|
T Consensus        64 ~~~l~~-~~~~~~vLiDclt~wl~N~l~~~~~~~~~~~~~~~ll~~l~~~~~~~ViVsnEvG~Givp~~~~~R~f~d~lG  142 (166)
T pfam02283        64 AEALAR-LPGGDVVLVDCLTLWLTNLLFAGDDEEDIEAEVDELLAALKARPAPVVLVSNEVGLGIVPENALGRRFRDLLG  142 (166)
T ss_pred             HHHHHH-CCCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             999984-6989869997177899998762374778999999999999748997999976767887589878999999999


No 179
>PRK07263 consensus
Probab=93.57  E-value=0.56  Score=25.53  Aligned_cols=24  Identities=29%  Similarity=0.578  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             299983589874799999999998
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      .++|.|..+++|||+.++-+++-.
T Consensus       204 dLiviaaRPsmGKTa~alnia~~i  227 (453)
T PRK07263        204 QLIILAARPAVGKTAFVLNIAQNV  227 (453)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             689997278884789999999999


No 180
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.46  E-value=0.07  Score=31.21  Aligned_cols=34  Identities=29%  Similarity=0.238  Sum_probs=28.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             3299983589874799999999998404861201388
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      +.|-||||+   |||++|..+.+-|+..+++.+..|.
T Consensus       103 ~~IaITGTN---GKTTTt~ll~~iL~~~g~~~~~~GN  136 (418)
T PRK00683        103 PSLGITGST---GKTTTILFLEHLLRTLGIPAFAMGN  136 (418)
T ss_pred             CEEEEECCC---CCEEHHHHHHHHHHHCCCCCEEEEC
T ss_conf             879997689---8660999999999867998188803


No 181
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.46  E-value=0.1  Score=30.21  Aligned_cols=34  Identities=15%  Similarity=0.110  Sum_probs=28.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             3299983589874799999999998404861201388
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      +.|-||||+   |||++|..+.+-|+..+++.+..|.
T Consensus       110 ~~IaVTGTn---GKTTTtsli~~iL~~~g~~~~~gGN  143 (448)
T PRK03803        110 PIVAITGSN---AKSTVTTLVGEMAKAAGKRVAVGGN  143 (448)
T ss_pred             CEEEECCCC---CHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             889985899---8388999999999865983799403


No 182
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.43  E-value=0.35  Score=26.80  Aligned_cols=27  Identities=26%  Similarity=0.259  Sum_probs=20.8

Q ss_pred             CCC-EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             983-2999835898747999999999984
Q gi|254780487|r    1 MKL-RLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         1 M~~-~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      |-. -++|.|| ||||||+++..|++-+.
T Consensus         1 ~~~~iiligG~-sGvGKStla~~lA~rlg   28 (197)
T PRK12339          1 MESTIHFIGGI-PGVGKTSISGYIARHRA   28 (197)
T ss_pred             CCCEEEEEECC-CCCCHHHHHHHHHHHCC
T ss_conf             97479998579-98878999999999749


No 183
>PRK06761 hypothetical protein; Provisional
Probab=93.28  E-value=0.11  Score=29.88  Aligned_cols=31  Identities=26%  Similarity=0.282  Sum_probs=28.1

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             98329998358987479999999999840486
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      |+|-|||=|- +|+|||+.+--|+..|+..+.
T Consensus         1 m~kLIiIEGl-PGsGKSTta~~l~d~L~~~g~   31 (281)
T PRK06761          1 MTKLIIIEGL-PGFGKSTTAHLLNDKLSQLKI   31 (281)
T ss_pred             CCCEEEEECC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf             9617999668-999801499999999986698


No 184
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128   The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=93.26  E-value=0.1  Score=30.22  Aligned_cols=32  Identities=25%  Similarity=0.299  Sum_probs=27.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             329998358987479999999999840486120
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      +.|+|.|| ||+|||.+---|++.+|.+|=|.|
T Consensus       209 Qh~L~~GT-tG~GKs~~lr~LL~~iR~rGd~AI  240 (613)
T TIGR02759       209 QHILIHGT-TGSGKSVALRKLLRWIRQRGDRAI  240 (613)
T ss_pred             CCEEEECC-CCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf             25266454-174389999999999986398589


No 185
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.26  E-value=0.63  Score=25.22  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=21.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHH-HHCCCCC
Q ss_conf             29998358987479999999999-8404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHA-LNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~-l~~~~~K   33 (217)
                      .+.|.|-.|++|||++++-++.. ....+.|
T Consensus        31 eL~viaarpg~GKT~f~~~~a~~~~~~~g~~   61 (271)
T cd01122          31 ELIILTAGTGVGKTTFLREYALDLITQHGVR   61 (271)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf             0899996899869999999999999976990


No 186
>cd01884 EF_Tu EF-Tu subfamily.  This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts.  It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors.  The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family.  EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function.  When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors.  Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=93.26  E-value=0.62  Score=25.28  Aligned_cols=64  Identities=16%  Similarity=0.157  Sum_probs=37.1

Q ss_pred             HCCEEEEECCCCCCCCCCCCCCHHHHHH-HHCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             2887999227655566767530899999-7479-448970577650457999999998479907999976977
Q gi|254780487|r   93 INDSIIIEGIGGLLVPLTTEYLFIDLIE-RWQF-PIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDS  163 (217)
Q Consensus        93 ~~D~viIEGagg~~~~~~~~~~~~dla~-~l~~-~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~  163 (217)
                      ++.+.+|+..|.-      +. ..++.+ .-.+ -+|||+++..|-..+|.-.+..++..|++..-|.+|+.-
T Consensus        64 ~~~~~~IDtPGH~------dF-~~~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D  129 (195)
T cd01884          64 NRHYAHVDCPGHA------DY-IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKAD  129 (195)
T ss_pred             CEEEEECCCCCHH------HH-HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             8169962689607------78-889986351136268998527787478999999999809996279996877


No 187
>PRK06217 hypothetical protein; Validated
Probab=93.24  E-value=0.1  Score=30.16  Aligned_cols=27  Identities=33%  Similarity=0.529  Sum_probs=23.3

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             3299983589874799999999998404
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAY   30 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~   30 (217)
                      |+|+|.|.+ |+|||+.+..|++.+...
T Consensus         2 ~rI~i~G~s-GsGkSTla~~La~~l~~~   28 (185)
T PRK06217          2 MRIHITGAS-GSGTTTLGAALAEALDLP   28 (185)
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHCCC
T ss_conf             679997899-887899999999975989


No 188
>KOG2004 consensus
Probab=93.16  E-value=0.33  Score=26.97  Aligned_cols=30  Identities=37%  Similarity=0.578  Sum_probs=23.8

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             3299983589874799999999998404861
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      |-+...|- +|||||++.-.++++|++.||.
T Consensus       439 kIlCf~GP-PGVGKTSI~kSIA~ALnRkFfR  468 (906)
T KOG2004         439 KILCFVGP-PGVGKTSIAKSIARALNRKFFR  468 (906)
T ss_pred             CEEEEECC-CCCCCCCHHHHHHHHHCCCEEE
T ss_conf             37998689-9877321899999984874699


No 189
>PRK06904 replicative DNA helicase; Validated
Probab=93.09  E-value=0.67  Score=25.06  Aligned_cols=33  Identities=36%  Similarity=0.447  Sum_probs=24.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             299983589874799999999998404861201
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ   36 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~   36 (217)
                      .++|.|-.+++|||+.++.+++-.-..+-+||.
T Consensus       222 ~LiViAaRPsmGKTa~alnia~n~A~~~~~~V~  254 (472)
T PRK06904        222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVL  254 (472)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             579997379875689999999999995599579


No 190
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.07  E-value=0.61  Score=25.29  Aligned_cols=124  Identities=15%  Similarity=0.124  Sum_probs=53.0

Q ss_pred             EEEECCCCCCCHHHHHHHHHH-HHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCC-C--CCC----CCCCCHHHHHHH
Q ss_conf             999835898747999999999-98404861201388738068999998557873114-4--300----145103478899
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVH-ALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHII-P--EKW----KLRTPASPHLAA   76 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~-~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~-~--~~~----~~~~~~~~~~~~   76 (217)
                      -+|+|. +|+|||+.++-++. +++. +-|-+=-. .++.-..+..+.....-+... .  ...    .+.....+....
T Consensus         2 tLi~G~-pGsGKT~~a~qfl~~~a~~-ge~~lyis-~eE~~~~l~~~~~~~g~d~~~~~~~g~l~i~~~~~~~~~~~~~~   78 (187)
T cd01124           2 TLLSGG-PGTGKTTFALQFLYAGLAR-GEPGLYVT-LEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESS   78 (187)
T ss_pred             EEEEEC-CCCCHHHHHHHHHHHHHHC-CCCEEEEE-ECCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCHHHH
T ss_conf             158768-9999999999999999876-99789999-50799999999998399858986458568996262002203332


Q ss_pred             HHHHCCCHHHH-HHHHHHCCEEEEECCCCCCCCCCCC-----CCHHHHHHHHCCCEEEEECC
Q ss_conf             98502350788-6422328879992276555667675-----30899999747944897057
Q gi|254780487|r   77 EIDGVIIDPAT-INPPDINDSIIIEGIGGLLVPLTTE-----YLFIDLIERWQFPIILCART  132 (217)
Q Consensus        77 ~~~~~~i~~~~-~~~~~~~D~viIEGagg~~~~~~~~-----~~~~dla~~l~~~vILV~~~  132 (217)
                      ..+ ...+... .-...+.+.++|.+...+.......     .......+.+++.+++++..
T Consensus        79 ~~~-~l~~~i~~~i~~~~~~~vVIDSi~~l~~~~~~~~~~~~~~l~~~l~~~~~t~ll~~e~  139 (187)
T cd01124          79 LRL-ELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ  139 (187)
T ss_pred             HHH-HHHHHHHHHHHHHCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             367-8999999999984998999948688752566668999999999999769968999974


No 191
>PRK08116 hypothetical protein; Validated
Probab=93.05  E-value=0.68  Score=25.02  Aligned_cols=110  Identities=20%  Similarity=0.233  Sum_probs=55.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             32999835898747999999999984048612013887380689999985578731144300145103478899985023
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI   82 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (217)
                      +.+++.|. +|+|||+++.++++.+-..|++-+-.     .-+.++..+-..-...                     ...
T Consensus       109 ~GLll~G~-~GtGKThLa~aIa~~l~~~g~~V~~~-----~~~~ll~~lk~~~~~~---------------------~~~  161 (262)
T PRK08116        109 VGLLLWGS-PGNGKTYLAAAIANELIEKGVPVVFV-----NVPELLNRIKSTYNSE---------------------GKE  161 (262)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEE-----EHHHHHHHHHHHHHCC---------------------CCH
T ss_conf             61899898-99989999999999999879939998-----8999999999998635---------------------610


Q ss_pred             CHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH--H-HCCCEEEEECCCCCHHHH
Q ss_conf             50788642232887999227655566767530899999--7-479448970577650457
Q gi|254780487|r   83 IDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE--R-WQFPIILCARTSLGTINH  139 (217)
Q Consensus        83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~--~-l~~~vILV~~~~~g~i~~  139 (217)
                      -...+...-..+|++||+=.|--...........++..  . -+.|+|+-++.....+..
T Consensus       162 ~~~e~l~~l~~~dLLIiDDlG~e~~t~w~~e~lf~IIn~Ry~~~kptIiTTNl~~~eL~~  221 (262)
T PRK08116        162 DENEIIRALDNADLLILDDLGAEKDTEWVREKLYNIIDSRYRKGLPTIFTTNLSLEELKN  221 (262)
T ss_pred             HHHHHHHHHHCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
T ss_conf             199999986129989983221456987899999999999997699989987999999999


No 192
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345   These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=93.04  E-value=0.48  Score=25.99  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=21.5

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             3299983589874799999999998
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      .+++|..-++|-|||||+-+++..+
T Consensus       365 ~Kv~iLTGGPGTGKtT~t~~i~~~~  389 (769)
T TIGR01448       365 DKVVILTGGPGTGKTTITKAIIELY  389 (769)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             9489985778886168999999999


No 193
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.01  E-value=0.14  Score=29.35  Aligned_cols=31  Identities=35%  Similarity=0.397  Sum_probs=27.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             29998358987479999999999840486120
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      -|++||- ||+|||+++-.|.+.|+..|.+.+
T Consensus         9 viW~TGL-sGSGKTTiA~~l~~~L~~~g~~~~   39 (176)
T PRK05541          9 VIWITGL-AGSGKTTIAKALYERLKLKYSNVI   39 (176)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             9997899-999899999999999997599779


No 194
>pfam10609 ParA ParA/MinD ATPase like. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.
Probab=92.98  E-value=0.52  Score=25.73  Aligned_cols=61  Identities=15%  Similarity=0.161  Sum_probs=46.3

Q ss_pred             CEEEEECCCCCCCCCCCCCCHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             879992276555667675308999997479-4489705776504579999999984799079999769
Q gi|254780487|r   95 DSIIIEGIGGLLVPLTTEYLFIDLIERWQF-PIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG  161 (217)
Q Consensus        95 D~viIEGagg~~~~~~~~~~~~dla~~l~~-~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~  161 (217)
                      |++||.-.-|.      +..-..+++.+.. .+|+|+....-+...+.-++.++++.++++.|+|-|.
T Consensus         2 DyLiiD~PPGT------gD~~ltl~~~~~~~~~ivVTTP~~ls~~dv~r~i~~~~~~~i~ilGiVENM   63 (81)
T pfam10609         2 DYLIIDMPPGT------GDEHLTLAQSLPVDGAVIVTTPQDVALLDVRKAIDMFKKLNVPILGIVENM   63 (81)
T ss_pred             CEEEEECCCCC------CHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             89999489996------789999997488577699809859999999999999998499618999779


No 195
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.96  E-value=0.7  Score=24.94  Aligned_cols=119  Identities=12%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCE-ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             9998358987479999999999840486120-138873806899999855787311443001451034788999850235
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPI-QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv-~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      ..|+| .+|+|||++++-++......+.|-+ -++  +...+..+.+..........-+.+.+.........     ..+
T Consensus        22 t~i~G-~pG~GKStl~lq~a~~~~~~g~~v~Yidt--E~~~~er~~qi~~~~~~~~~~~i~v~~~~~~~~~~-----~~i   93 (218)
T cd01394          22 TQVYG-PPGTGKTNIAIQLAVETAGQGKKVAYIDT--EGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQG-----RAI   93 (218)
T ss_pred             EEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEEEC--CCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHH-----HHH
T ss_conf             99989-99984999999999998636986999966--55676999999875366653051462678768899-----999


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCC---------------CHHHHHHHHCCCEEEEEC
Q ss_conf             078864223288799922765556676753---------------089999974794489705
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLLVPLTTEY---------------LFIDLIERWQFPIILCAR  131 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~---------------~~~dla~~l~~~vILV~~  131 (217)
                      ........++.+++||...-.++.....+.               ....+|+..+.+||+|..
T Consensus        94 ~~~~~~~~~~~~lvViDSi~tl~~~e~~~~~~~~~~~r~l~~~~~~L~~~Ak~~~~~vil~nq  156 (218)
T cd01394          94 QETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQ  156 (218)
T ss_pred             HHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             999976414772999914045545540689647999999999999999998766988999921


No 196
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=92.84  E-value=0.17  Score=28.87  Aligned_cols=32  Identities=16%  Similarity=0.097  Sum_probs=26.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             329998358987479999999999840486120
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      +.++|+|| ||+|||.+-..|++..|.++=|.|
T Consensus       186 qH~li~GT-tGtGKS~~ir~LL~qIR~RGdrAI  217 (732)
T PRK13700        186 QNFCLHGT-VGAGKSEVIRRLANYARQRGDMVV  217 (732)
T ss_pred             HEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             12677468-888899999999999997299589


No 197
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=92.76  E-value=0.2  Score=28.29  Aligned_cols=56  Identities=23%  Similarity=0.359  Sum_probs=33.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             2999835898747999999999984048612013887380689999985578731144300
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKW   64 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~   64 (217)
                      -|.|.|. +|+|||+|...|++.+...|+    -|..-.+....-+...+.+.+..+..||
T Consensus        10 iiVVMGV-sGsGKSTig~~LA~~l~~~fi----egDdfHp~~Ni~KM~~GiPLtD~DR~pW   65 (177)
T PRK11545         10 IYVLMGV-SGSGKSAVASAVAHQLHAAFL----DGDFLHPRCNIEKMASGEPLNDDDRKPW   65 (177)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHCCCEE----CCCCCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf             9999847-989999999999998199855----3655589999998628999986888999


No 198
>PRK05748 replicative DNA helicase; Provisional
Probab=92.70  E-value=0.76  Score=24.72  Aligned_cols=24  Identities=42%  Similarity=0.623  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             299983589874799999999998
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      -++|.|-.+++|||+.++-+++..
T Consensus       204 ~LiviaaRP~mGKTa~alnia~~~  227 (448)
T PRK05748        204 DLIIVAARPSVGKTAFALNIAQNV  227 (448)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             379998479987689999999999


No 199
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=92.67  E-value=0.15  Score=29.09  Aligned_cols=28  Identities=29%  Similarity=0.434  Sum_probs=23.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             29998358987479999999999840486
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      +|||||- .|||||++..-+++.|+..++
T Consensus         1 ki~ITG~-pGvGKTTli~kv~~~l~~~~~   28 (168)
T pfam03266         1 RIFITGP-PGVGKTTLVKKVIELLKSEGV   28 (168)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf             9899789-998899999999999986797


No 200
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.55  E-value=0.32  Score=27.03  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=24.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             299983589874799999999998404861201
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ   36 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~   36 (217)
                      -|+|||- ||+|||++-++++..++...-+-|-
T Consensus       127 LILVTGp-TGSGKSTTlAamId~iN~~~~~HIl  158 (353)
T COG2805         127 LILVTGP-TGSGKSTTLAAMIDYINKHKAKHIL  158 (353)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf             6998679-9996787999999998414775168


No 201
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.55  E-value=0.36  Score=26.73  Aligned_cols=99  Identities=22%  Similarity=0.274  Sum_probs=49.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      .|-|.|- +|+|||+|+.-|+.-+   ++|-|.+|      ..|-..+..+..+....+-+...+|   +..-..+    
T Consensus         2 ~ItIsG~-pGsG~TTva~~lAe~~---gl~~vsaG------~iFR~~A~e~gmsl~ef~~~AE~~p---~iD~~iD----   64 (179)
T COG1102           2 VITISGL-PGSGKTTVARELAEHL---GLKLVSAG------TIFREMARERGMSLEEFSRYAEEDP---EIDKEID----   64 (179)
T ss_pred             EEEECCC-CCCCCHHHHHHHHHHH---CCCEEECC------HHHHHHHHHCCCCHHHHHHHHHCCC---HHHHHHH----
T ss_conf             7996179-9997027999999982---97156212------7999999983999999999875192---1669988----


Q ss_pred             HHHHHHHHHHCCEEEEECC-CCCCCCCCCCCCHHHHHHHHCCCE
Q ss_conf             0788642232887999227-655566767530899999747944
Q gi|254780487|r   84 DPATINPPDINDSIIIEGI-GGLLVPLTTEYLFIDLIERWQFPI  126 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGa-gg~~~~~~~~~~~~dla~~l~~~v  126 (217)
                       .......+ .+-+++||- -||..-     ..+|+.-+|.||.
T Consensus        65 -~rq~e~a~-~~nvVlegrLA~Wi~k-----~~adlkI~L~Apl  101 (179)
T COG1102          65 -RRQKELAK-EGNVVLEGRLAGWIVR-----EYADLKIWLKAPL  101 (179)
T ss_pred             -HHHHHHHH-CCCEEEHHHHHHHHHC-----CCCCEEEEEECCH
T ss_conf             -99999987-2895870045788733-----5654688885759


No 202
>PRK09183 transposase/IS protein; Provisional
Probab=92.53  E-value=0.16  Score=28.90  Aligned_cols=132  Identities=21%  Similarity=0.187  Sum_probs=61.4

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      -+++.|. ||+|||+++++|.+..-..|++-.-.     .-..++..+.                      .+..++ ..
T Consensus       103 Nvil~G~-~GtGKThLA~Alg~~A~~~G~~v~f~-----~~~~L~~~L~----------------------~a~~~~-~~  153 (258)
T PRK09183        103 NIVLLGP-SGVGKTHLAIALGYEAVRAGIKVRFT-----TAADLLLQLS----------------------TAQRQG-RY  153 (258)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEE-----EHHHHHHHHH----------------------HHHHCC-CH
T ss_conf             6799899-99868999999999999879939997-----8999999999----------------------998768-59


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH--HHCCCEEEEECCC---CC-HH-HHHHHHHHHHHHCCCEEEE
Q ss_conf             0788642232887999227655566767530899999--7479448970577---65-04-5799999999847990799
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE--RWQFPIILCARTS---LG-TI-NHSLLSLETLRNRNINIIG  156 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~--~l~~~vILV~~~~---~g-~i-~~~~l~~~~~~~~g~~i~G  156 (217)
                      ...+.+.-..+|++||+-.|-..-.........++..  .-+..+|+-++..   .+ .+ .+..++...+.+.=-+-.-
T Consensus       154 ~~~l~r~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye~~S~IiTSn~~~~~W~~~f~~D~~la~AilDRL~H~a~~  233 (258)
T PRK09183        154 KTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGAMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHV  233 (258)
T ss_pred             HHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCEEE
T ss_conf             99999874346514431331546888899999999999857677899889997898565168699999999986046179


Q ss_pred             EEECCCCC
Q ss_conf             99769778
Q gi|254780487|r  157 IAFIGDSM  164 (217)
Q Consensus       157 iIlN~~~~  164 (217)
                      +.+++.+.
T Consensus       234 i~l~GeSy  241 (258)
T PRK09183        234 VQIKGESY  241 (258)
T ss_pred             EEECCCCC
T ss_conf             97458772


No 203
>pfam08245 Mur_ligase_M Mur ligase middle domain.
Probab=92.46  E-value=0.81  Score=24.52  Aligned_cols=29  Identities=31%  Similarity=0.248  Sum_probs=23.0

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             98358987479999999999840486120138
Q gi|254780487|r    7 IVGTDTSVGKTIFASALVHALNAYYWKPIQSG   38 (217)
Q Consensus         7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G   38 (217)
                      ||||+   |||+++.-|.+.|+..|.+....|
T Consensus         1 VTGT~---GKTTt~~ml~~iL~~~g~~~~~~g   29 (188)
T pfam08245         1 ITGTN---GKTTTTELIAALLSAAGGVVGTGG   29 (188)
T ss_pred             CCCCC---CHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             93758---689999999999983899899838


No 204
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763    This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=92.44  E-value=0.11  Score=29.98  Aligned_cols=27  Identities=30%  Similarity=0.380  Sum_probs=24.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             3299983589874799999999998404
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAY   30 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~   30 (217)
                      -+|+-+|+. |+|||+++--|+++|+-.
T Consensus        37 HAYLF~GpR-GtGKTS~ARIfAKaLNC~   63 (363)
T TIGR02397        37 HAYLFSGPR-GTGKTSIARIFAKALNCQ   63 (363)
T ss_pred             CEEEECCCC-CCCHHHHHHHHHHHHCCC
T ss_conf             234502859-976355899999986588


No 205
>PRK07261 topology modulation protein; Provisional
Probab=92.36  E-value=0.16  Score=28.95  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=21.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             329998358987479999999999840
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      ++|.|.|+ +|+|||+.+-.|.+.+..
T Consensus         1 MrI~IiG~-sGsGKSTlAr~L~~~~~i   26 (171)
T PRK07261          1 MKIAIIGY-SGSGKSTLARFLGQHYNC   26 (171)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf             98999889-998689999999998797


No 206
>PRK09165 replicative DNA helicase; Provisional
Probab=92.34  E-value=0.59  Score=25.42  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHH
Q ss_conf             2999835898747999999999
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVH   25 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~   25 (217)
                      -++|.|..+++|||..++-++.
T Consensus       206 dLiIIAARPsmGKTafaLniA~  227 (484)
T PRK09165        206 DLIILAGRPSMGKTALATNIAF  227 (484)
T ss_pred             CEEEEEECCCCCHHHHHHHHHH
T ss_conf             3799960799977899999999


No 207
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=92.34  E-value=0.14  Score=29.29  Aligned_cols=29  Identities=34%  Similarity=0.433  Sum_probs=26.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             32999835898747999999999984048612
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKP   34 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP   34 (217)
                      ..|-|+||+   |||++|.-|...|...+..|
T Consensus       108 ~~iaVaGTH---GKTTTTsmla~vl~~~gldP  136 (459)
T COG0773         108 TSIAVAGTH---GKTTTTSMLAWVLEAAGLDP  136 (459)
T ss_pred             EEEEEECCC---CCHHHHHHHHHHHHHCCCCC
T ss_conf             169994788---75408999999998679998


No 208
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.24  E-value=0.24  Score=27.80  Aligned_cols=30  Identities=27%  Similarity=0.279  Sum_probs=25.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             2999835898747999999999984048612
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKP   34 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP   34 (217)
                      .++.||- ||+|||+++.+|.+.|...|+.-
T Consensus        25 viW~TGL-SGsGKSTiA~ale~~L~~~G~~~   54 (197)
T COG0529          25 VIWFTGL-SGSGKSTIANALEEKLFAKGYHV   54 (197)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCEE
T ss_conf             9996468-88878799999999999759758


No 209
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=92.09  E-value=0.12  Score=29.80  Aligned_cols=26  Identities=46%  Similarity=0.593  Sum_probs=23.1

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             299983589874799999999998404
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAY   30 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~   30 (217)
                      .|||+|| |.||||-++.-|.+.+++.
T Consensus         1 vi~i~Gp-TAvGKs~L~i~La~~lnaE   26 (307)
T TIGR00174         1 VIVIMGP-TAVGKSNLAIQLAKKLNAE   26 (307)
T ss_pred             CEEEEEC-CCCCHHHHHHHHHHHCCEE
T ss_conf             9677408-8554778999988768957


No 210
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=92.05  E-value=0.91  Score=24.21  Aligned_cols=113  Identities=22%  Similarity=0.212  Sum_probs=61.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE----------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CHH
Q ss_conf             3299983589874799999999998404861201----------38873806899999855787311443001451-034
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ----------SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRT-PAS   71 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~----------~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~   71 (217)
                      .+|=|||. +|+||++..-.|.+.++..+.| |+          ||.--=.|-..+...+..+.-+..+.+..-.. ..+
T Consensus        50 ~~iGiTG~-pG~GKStli~~l~~~~~~~g~~-v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~srg~lgg~~  127 (325)
T PRK09435         50 LRIGITGV-PGVGKSTFIEALGMHLIEQGHK-VAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA  127 (325)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf             59974279-9986889999999999967985-899997899998886101038888761479984884067788867733


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf             7889998502350788642232887999227655566767530899999747944897057
Q gi|254780487|r   72 PHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART  132 (217)
Q Consensus        72 ~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~  132 (217)
                      ...        .+.....-..++|++|||.+|-       +.+-.+++..-+.-++++.+.
T Consensus       128 ~~~--------~~~~~~~~a~g~d~i~iETvGv-------GQ~e~~v~~~~d~~~~~~~p~  173 (325)
T PRK09435        128 RKT--------RETMLLCEAAGFDVILVETVGV-------GQSETAVAGMVDFFLLLQLPG  173 (325)
T ss_pred             HHH--------HHHHHHHHHCCCCEEEEEECCC-------CHHHHHHHHHCCEEEEEECCC
T ss_conf             549--------9999999977999899970677-------714889987426688883588


No 211
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136   This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=92.02  E-value=0.69  Score=24.98  Aligned_cols=107  Identities=22%  Similarity=0.252  Sum_probs=61.0

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHCCCCCCEE---CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             983589874799999999998404861201---38873806899999855787311443001451034788999850235
Q gi|254780487|r    7 IVGTDTSVGKTIFASALVHALNAYYWKPIQ---SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~---~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      |.|- .|.|||+.-...=.++...||.=+.   +|.    =+.=++.-++...          ++-.|-..+++.....+
T Consensus       435 VvG~-AGtGKSt~L~aAR~AWe~~Gy~V~GAALsGK----AAegLe~~sGI~S----------RTLASle~aW~~G~d~L  499 (888)
T TIGR02768       435 VVGR-AGTGKSTMLKAAREAWEAAGYRVIGAALSGK----AAEGLEAESGIES----------RTLASLEYAWANGRDLL  499 (888)
T ss_pred             EECC-CCCCHHHHHHHHHHHHHHCCCEEEEHHHHHH----HHHHHHCCCCCCH----------HHHHHHHHHHHCCCCCC
T ss_conf             9748-9987667899999999873977871545558----9887300268750----------47887999987387522


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC-CCCHHH
Q ss_conf             0788642232887999227655566767530899999747944897057-765045
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART-SLGTIN  138 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~-~~g~i~  138 (217)
                              ...|++||.=||  |+++-.---..+.|..-+++||||+|. ++..|.
T Consensus       500 --------~~~dvLviDEAG--MV~S~Qm~r~l~~A~~AGaKvVLvGD~~QLqaI~  545 (888)
T TIGR02768       500 --------EDKDVLVIDEAG--MVGSRQMARVLKEAEEAGAKVVLVGDPEQLQAIE  545 (888)
T ss_pred             --------CCCCEEEEECCC--CHHHHHHHHHHHHHHHCCCCEEEECCHHHHCHHH
T ss_conf             --------477668985154--4146778899999987276059848857824424


No 212
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277   This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=92.01  E-value=0.18  Score=28.67  Aligned_cols=26  Identities=27%  Similarity=0.419  Sum_probs=22.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             329998358987479999999999840
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      .-|||-|- ||+|||.||--+++.|+.
T Consensus        44 ~Ni~iYGk-TGtGKT~vt~~v~~~l~~   69 (383)
T TIGR02928        44 SNIFIYGK-TGTGKTAVTKYVMKELEE   69 (383)
T ss_pred             CCEEEECC-CCCCHHHHHHHHHHHHHH
T ss_conf             72588788-898788999999999999


No 213
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.93  E-value=0.94  Score=24.13  Aligned_cols=30  Identities=27%  Similarity=0.373  Sum_probs=22.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHH-HCCCCC
Q ss_conf             299983589874799999999998-404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHAL-NAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l-~~~~~K   33 (217)
                      .++|.|..|++|||+.++-++..+ ...++|
T Consensus        14 ~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~   44 (242)
T cd00984          14 DLIIIAARPSMGKTAFALNIAENIAKKQGKP   44 (242)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             1899996899999999999999999977995


No 214
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.89  E-value=0.26  Score=27.60  Aligned_cols=32  Identities=28%  Similarity=0.292  Sum_probs=27.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             329998358987479999999999840486120
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      .-|++||- ||+|||+++-.|.+.|+..+++.+
T Consensus        25 ~viWlTGL-SGSGKTTlA~~L~~~L~~~~~~~~   56 (198)
T PRK03846         25 VVLWFTGL-SGSGKSTVAGALEEALHELGVHTY   56 (198)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             69998799-999889999999999997599759


No 215
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548   Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=91.89  E-value=0.5  Score=25.84  Aligned_cols=124  Identities=13%  Similarity=0.078  Sum_probs=64.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHH---HHHHCCC-CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             299983589874799999999---9984048-612013887380689999985578731144300145103478899985
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALV---HALNAYY-WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEID   79 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~---~~l~~~~-~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (217)
                      |=|--=.|+|.|||++|=-++   .|++.+| .|.=.|...-.+|.+-+.+--+.+.+...+..     ++         
T Consensus        12 R~FAIISHPDAGKTT~TEK~LLyG~AIQ~AG~VK~r~S~~~A~SDWM~ME~QRGISIT~~VlQF-----~Y---------   77 (530)
T TIGR00503        12 RTFAIISHPDAGKTTLTEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVLQF-----PY---------   77 (530)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEE-----CC---------
T ss_conf             5543661688874246788887425665224412200122122137887505881444127741-----45---------


Q ss_pred             HCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             0235078864223288799922765556676753089999974794489705776504579999999984799079999
Q gi|254780487|r   80 GVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIA  158 (217)
Q Consensus        80 ~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiI  158 (217)
                                  .++=+-|.+..|.-    .+..++.+-..+.+ .++.|.++-.|.=..|.--.|..|-|..+|.-+|
T Consensus        78 ------------~~~l~NLLDTPGH~----DFSEDTYRTL~A~D-~~~M~IDaAKG~E~~T~KL~EV~RLR~~PI~TF~  139 (530)
T TIGR00503        78 ------------RDCLVNLLDTPGHE----DFSEDTYRTLTAVD-NCLMVIDAAKGVETRTRKLMEVTRLRDLPILTFI  139 (530)
T ss_pred             ------------CCCEEECCCCCCCC----CCCCHHHHHHHHHH-HHEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             ------------77456203685888----76404679999851-2300111125612342445420100047443352


No 216
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=91.86  E-value=0.95  Score=24.10  Aligned_cols=28  Identities=25%  Similarity=0.349  Sum_probs=24.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             3299983589874799999999998404861
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      |.|-|+||+   ||.++++-|...|+..|+|
T Consensus        50 ~~IhVaGTN---GKGSt~~~l~~il~~~G~~   77 (416)
T PRK10846         50 FVFTVAGTN---GKGTTCRTLESILMAAGYR   77 (416)
T ss_pred             CEEEEECCC---CHHHHHHHHHHHHHHCCCC
T ss_conf             989996885---5799999999999987997


No 217
>pfam06418 CTP_synth_N CTP synthase N-terminus. This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyses the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position.
Probab=91.83  E-value=0.97  Score=24.06  Aligned_cols=182  Identities=18%  Similarity=0.094  Sum_probs=83.9

Q ss_pred             CCEEEEECC-CCCCCHHHHHHHHHHHHHCCCCC------------------CEECCC--------CCCCHHHHHHHHHCC
Q ss_conf             832999835-89874799999999998404861------------------201388--------738068999998557
Q gi|254780487|r    2 KLRLVIVGT-DTSVGKTIFASALVHALNAYYWK------------------PIQSGM--------YEETDSKTIHRIGRI   54 (217)
Q Consensus         2 ~~~i~I~GT-~t~vGKT~vs~~L~~~l~~~~~K------------------Pv~~G~--------~~~~D~~~~~~~~~~   54 (217)
                      +|=|||+|. -|+.||-.+++.|.+.|+.+|+|                  |++-|.        ..|-|-....+....
T Consensus         1 tkyi~vtGGV~SglGKGi~~aSig~ll~~~g~~v~~~K~DpYlNvD~Gtm~P~eHGEVfV~~DG~EtDlDlG~YERFl~~   80 (275)
T pfam06418         1 TKYIFVTGGVVSSLGKGITAASLGRLLKSRGLKVTIQKIDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDI   80 (275)
T ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCC
T ss_conf             93999959850256318999999999996796367874156312388877833156078737874014767523431477


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHC----C----------CHHHHHH-HHHHCCEEEEECCCCCC--CCCCCCCCHHH
Q ss_conf             873114430014510347889998502----3----------5078864-22328879992276555--66767530899
Q gi|254780487|r   55 PKSHIIPEKWKLRTPASPHLAAEIDGV----I----------IDPATIN-PPDINDSIIIEGIGGLL--VPLTTEYLFID  117 (217)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------i~~~~~~-~~~~~D~viIEGagg~~--~~~~~~~~~~d  117 (217)
                      ..+...  -.+--..++.-+..+..+.    +          |.....+ ..+++|++|||--|-+.  ....+-.-..+
T Consensus        81 ~l~~~~--niTtGkiy~~Vi~kER~G~YLGkTVQvIPHiTdeIk~~I~~~a~~~~Di~ivEiGGTVGDIEs~pFlEAiRQ  158 (275)
T pfam06418        81 NLTKDN--NITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAAKGADVVIVEIGGTVGDIESLPFLEAIRQ  158 (275)
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCEEECCCCCHHHHHHHH
T ss_conf             756666--634018899999887556758971587788569999999985567897899975760100102289999999


Q ss_pred             HHHHHCC-CEEEEECC---CCCHH-----HHHHHHHHHHHHCCCEEEEEEEC--CCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf             9997479-44897057---76504-----57999999998479907999976--9778005999998619989999478
Q gi|254780487|r  118 LIERWQF-PIILCART---SLGTI-----NHSLLSLETLRNRNINIIGIAFI--GDSMPKVEETIVKIGRIPHLGRLPK  185 (217)
Q Consensus       118 la~~l~~-~vILV~~~---~~g~i-----~~~~l~~~~~~~~g~~i~GiIlN--~~~~~~~~~~le~~~~ipvLG~iP~  185 (217)
                      +...++. .+.+|--.   ..++.     --+--++..++..|+.---++.-  ....+..++-|.-++++|.=.+|.-
T Consensus       159 l~~~~g~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVkeLrs~GIqPDilvcRse~~l~~~~k~KIslfcnV~~~~VI~~  237 (275)
T pfam06418       159 FRLEVGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLDEETKEKIALFCNVPKEAVISA  237 (275)
T ss_pred             HHHHHCCCCEEEEEEEECCEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEE
T ss_conf             9887287756999987324436887545673288899999648998758870678999999999987639986678984


No 218
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.82  E-value=0.97  Score=24.05  Aligned_cols=31  Identities=19%  Similarity=0.328  Sum_probs=26.1

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             99983589874799999999998404861201
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQ   36 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~   36 (217)
                      |=|||. ||+|||++..++-+.|+..+.+|..
T Consensus         2 IaVtGs-SGAGtsTv~r~f~~IF~re~v~a~v   32 (277)
T cd02029           2 IAVTGS-SGAGTTTVKRAFEHIFAREGIHPAV   32 (277)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             899338-8884787999999987205885289


No 219
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=91.76  E-value=0.25  Score=27.78  Aligned_cols=29  Identities=34%  Similarity=0.452  Sum_probs=22.5

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      -+++.|. +|+|||+.+++|++.+-..+++
T Consensus        49 Nlll~G~-~GtGKThLA~Ai~~~~~~~g~~   77 (178)
T pfam01695        49 NLLLLGP-PGVGKTHLACALGHQACRAGYS   77 (178)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHHHCCCE
T ss_conf             6899899-9987899999999999986985


No 220
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; InterPro: IPR014345   Members of this entry belong to the family of polysaccharide chain length determinant proteins. They are found in species that encode the PEP-CTERM/exosortase system and are predicted to act in protein sorting in a number of Gram-negative bacteria, they are also found near the epsH homologue that is the putative exosortase gene..
Probab=91.74  E-value=0.38  Score=26.59  Aligned_cols=27  Identities=19%  Similarity=0.406  Sum_probs=21.3

Q ss_pred             CHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf             059999986199899994788888887
Q gi|254780487|r  166 KVEETIVKIGRIPHLGRLPKIDPIDPD  192 (217)
Q Consensus       166 ~~~~~le~~~~ipvLG~iP~~~~~~~~  192 (217)
                      +..+.|++.+|+||||+||++......
T Consensus       455 ~s~~~L~e~tG~PVLg~ip~I~~~~~~  481 (510)
T TIGR03007       455 RSVRDLRELTGLPVLGVIPMISTPEER  481 (510)
T ss_pred             CCHHHHHHHHCCCEEECCCCCCCHHHH
T ss_conf             788999988197357505765687999


No 221
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=91.73  E-value=0.25  Score=27.73  Aligned_cols=31  Identities=26%  Similarity=0.209  Sum_probs=26.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             29998358987479999999999840486120
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      -|++||- +|+|||+++-.|.+.|+..+.+.+
T Consensus         4 viW~TGL-sGsGKTTlA~~l~~~L~~~~~~~~   34 (157)
T pfam01583         4 TVWFTGL-SGSGKSTIANALERKLFAQGISVY   34 (157)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             9998898-999999999999999997599779


No 222
>PRK06526 transposase; Provisional
Probab=91.73  E-value=0.23  Score=27.93  Aligned_cols=131  Identities=17%  Similarity=0.242  Sum_probs=58.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      -+++.|. ||+|||+++++|++..=..|++-.-.    .. ..++..+.                      .+..++ ..
T Consensus       100 Nvil~G~-~GtGKThLA~Alg~~A~~~G~~v~f~----~~-~~L~~~L~----------------------~a~~~g-~~  150 (254)
T PRK06526        100 NVVFLGP-PGTGKTHLAIGLGIRACQAGHRVLFA----TA-AQWVARLA----------------------AAHHAG-RL  150 (254)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEE----EH-HHHHHHHH----------------------HHHHCC-CH
T ss_conf             7899899-99868999999999999869967998----77-99999999----------------------988558-09


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH--HCCCEEEEECCCC---C-HHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             07886422328879992276555667675308999997--4794489705776---5-0457999999998479907999
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIER--WQFPIILCARTSL---G-TINHSLLSLETLRNRNINIIGI  157 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~--l~~~vILV~~~~~---g-~i~~~~l~~~~~~~~g~~i~Gi  157 (217)
                      .....+ -..+|++||.-.|-..-.........++...  -+..+|+-++..-   + .+.+..++-..+.+.=-+-.-+
T Consensus       151 ~~~~~~-l~~~dLLIiDe~g~~~~~~~~a~~lf~li~~Rye~~S~IiTSn~~~~~W~~~f~D~~la~AilDRL~H~a~~i  229 (254)
T PRK06526        151 QDELVK-LGRIPLLIVDEVGYIPFEAEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVI  229 (254)
T ss_pred             HHHHHH-HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHCCCEEEE
T ss_conf             999998-5136877650213644788999999999999974588676658986688886486899999999862562899


Q ss_pred             EECCCCC
Q ss_conf             9769778
Q gi|254780487|r  158 AFIGDSM  164 (217)
Q Consensus       158 IlN~~~~  164 (217)
                      .+++.+.
T Consensus       230 ~~~G~Sy  236 (254)
T PRK06526        230 SLKGDSY  236 (254)
T ss_pred             EECCCCC
T ss_conf             8438866


No 223
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.73  E-value=0.29  Score=27.34  Aligned_cols=27  Identities=30%  Similarity=0.533  Sum_probs=21.7

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             9998358987479999999999840486
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      |+|.|- +|+|||++...|++.+...++
T Consensus         2 iiv~Gv-sGsGKSTia~~La~~lg~~~i   28 (150)
T cd02021           2 IVVMGV-SGSGKSTVGKALAERLGAPFI   28 (150)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHCCCEE
T ss_conf             899918-999999999999997199564


No 224
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=91.72  E-value=0.99  Score=23.98  Aligned_cols=52  Identities=25%  Similarity=0.172  Sum_probs=36.9

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCH-HHHHHHHHCC
Q ss_conf             8329998358987479999999999840486120138873806-8999998557
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETD-SKTIHRIGRI   54 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D-~~~~~~~~~~   54 (217)
                      .+=|-|-|.+ |+|||+.+-.|.+.|+..|++.+-+..|.++. +..++.....
T Consensus         3 g~fI~iEGiD-GaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~   55 (208)
T COG0125           3 GMFIVIEGID-GAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLN   55 (208)
T ss_pred             CEEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf             6299997888-8988999999999999829807998689998699999999738


No 225
>PRK08082 consensus
Probab=91.64  E-value=1  Score=23.93  Aligned_cols=24  Identities=42%  Similarity=0.623  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             299983589874799999999998
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      -++|.|-.+++|||..++.+++..
T Consensus       204 ~LiviaaRPsmGKTa~alnia~~~  227 (453)
T PRK08082        204 DLIIVAARPSVGKTAFALNIAQNV  227 (453)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             579998678875789999999999


No 226
>PRK08760 replicative DNA helicase; Provisional
Probab=91.60  E-value=1  Score=23.90  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=23.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             29998358987479999999999840486120
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      -++|.|..+++|||..++.+++-.-...-|||
T Consensus       230 ~LiViaaRPsmGKTalalnia~~~A~~~~~~V  261 (476)
T PRK08760        230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGV  261 (476)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf             77999877887478999999999998379978


No 227
>PRK07952 DNA replication protein DnaC; Validated
Probab=91.51  E-value=1  Score=23.85  Aligned_cols=110  Identities=14%  Similarity=0.176  Sum_probs=57.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      .++..|. .|+|||+.++++++.+-..|.. |--    -.=+.++..+-..-.                      ....-
T Consensus        98 gLlF~G~-~GTGKThLA~aIan~Li~~G~s-Vlf----~t~~dLl~~lr~t~~----------------------~~~~~  149 (242)
T PRK07952         98 SFIFSGK-PGTGKNHLAAAICNELLLRGKS-VLI----ITVADIMSAMKDTFR----------------------NSETS  149 (242)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCE-EEE----EEHHHHHHHHHHHHH----------------------CCCCC
T ss_conf             1799789-9997899999999999987994-999----779999999999980----------------------68756


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH-H--HCCCEEEEECCCCCHHHHHH
Q ss_conf             0788642232887999227655566767530899999-7--47944897057765045799
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE-R--WQFPIILCARTSLGTINHSL  141 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~-~--l~~~vILV~~~~~g~i~~~~  141 (217)
                      ...+...-..+|++||+-.|--..........-++.. .  -.-|+|+.++.....+...+
T Consensus       150 e~~~l~~l~~~dLLIiDdlG~e~~t~~~~~~lf~iId~Ry~~~kp~IitTNl~~~eL~~~l  210 (242)
T PRK07952        150 EEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLL  210 (242)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
T ss_conf             9999998631898987301466588889999999999999716988998179999999997


No 228
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=91.51  E-value=0.85  Score=24.41  Aligned_cols=25  Identities=28%  Similarity=0.575  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             2999835898747999999999984
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      .|..-|--||||||+++.-+++-|.
T Consensus        90 ~IILIGGasGVGkStIA~ElA~rLg  114 (299)
T COG2074          90 LIILIGGASGVGKSTIAGELARRLG  114 (299)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf             5999617887772579999999729


No 229
>KOG0781 consensus
Probab=91.49  E-value=1.1  Score=23.83  Aligned_cols=168  Identities=19%  Similarity=0.175  Sum_probs=80.2

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCC-------CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             99983589874799999999998404861-------20138873806899999855787311443001451034788999
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWK-------PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAE   77 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-------Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (217)
                      |-+.|-+ ||||++--+-++..|..-.|+       +|-+|.-+ .=..+..++...-.+..  ..+  ...+-. ..+.
T Consensus       381 i~fvGVN-GVGKSTNLAKIayWLlqNkfrVlIAACDTFRsGAvE-QLrtHv~rl~~l~~~~v--~lf--ekGYgk-d~a~  453 (587)
T KOG0781         381 ISFVGVN-GVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVE-QLRTHVERLSALHGTMV--ELF--EKGYGK-DAAG  453 (587)
T ss_pred             EEEEEEC-CCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHH-HHHHHHHHHHHHCCCHH--HHH--HHHCCC-CHHH
T ss_conf             9998214-766513299999999857836999862431244789-99999999987455204--888--610477-8289


Q ss_pred             HHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEE-EECCCCC--HHHHHHHHHHHHHHCC--C
Q ss_conf             850235078864223288799922765556676753089999974794489-7057765--0457999999998479--9
Q gi|254780487|r   78 IDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIIL-CARTSLG--TINHSLLSLETLRNRN--I  152 (217)
Q Consensus        78 ~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vIL-V~~~~~g--~i~~~~l~~~~~~~~g--~  152 (217)
                      .....|   -..-.+++|++||..||-......--.....+++.-+.+-|+ |+-+-.|  ++.++----.++..+.  -
T Consensus       454 vak~AI---~~a~~~gfDvvLiDTAGRmhn~~~LM~~L~kl~~~n~pD~i~~VgEALVG~dsvdq~~~Fn~al~d~~~~r  530 (587)
T KOG0781         454 VAKEAI---QEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPR  530 (587)
T ss_pred             HHHHHH---HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             999999---99986698789983544334780678999999744798659985055527558999999999874489744


Q ss_pred             EEEEEEECCCC--CCCHHHHH--HHHCCCCEEEE
Q ss_conf             07999976977--80059999--98619989999
Q gi|254780487|r  153 NIIGIAFIGDS--MPKVEETI--VKIGRIPHLGR  182 (217)
Q Consensus       153 ~i~GiIlN~~~--~~~~~~~l--e~~~~ipvLG~  182 (217)
                      .|-|+|+..+-  .+..-.++  -..+++|++.+
T Consensus       531 ~iDgilltK~DTvdd~vG~~v~Mvy~t~~PIlFv  564 (587)
T KOG0781         531 LIDGILLTKFDTVDDKVGAAVSMVYITGKPILFV  564 (587)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHEECCCCEEEE
T ss_conf             2343788712506568887876420038976998


No 230
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=91.45  E-value=1.1  Score=23.80  Aligned_cols=179  Identities=18%  Similarity=0.109  Sum_probs=84.0

Q ss_pred             CEEEEECC-CCCCCHHHHHHHHHHHHHCCCCC------------------CEECCC--------CCCCHHHHHHHHHCCC
Q ss_conf             32999835-89874799999999998404861------------------201388--------7380689999985578
Q gi|254780487|r    3 LRLVIVGT-DTSVGKTIFASALVHALNAYYWK------------------PIQSGM--------YEETDSKTIHRIGRIP   55 (217)
Q Consensus         3 ~~i~I~GT-~t~vGKT~vs~~L~~~l~~~~~K------------------Pv~~G~--------~~~~D~~~~~~~~~~~   55 (217)
                      |-|||||- =|+.||-.+++.|.+.|+.+|+|                  |+|-|.        ..|-|-....+.....
T Consensus         2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYERF~~~~   81 (533)
T COG0504           2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDVN   81 (533)
T ss_pred             EEEEEECCEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
T ss_conf             08999188503664279999999999977974789832664003888788565742898888750256664146544787


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHC----C----------CHHHHHHHHHH-CCEEEEECCCCCCCCCCCCCCHH----
Q ss_conf             73114430014510347889998502----3----------50788642232-88799922765556676753089----
Q gi|254780487|r   56 KSHIIPEKWKLRTPASPHLAAEIDGV----I----------IDPATINPPDI-NDSIIIEGIGGLLVPLTTEYLFI----  116 (217)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------i~~~~~~~~~~-~D~viIEGagg~~~~~~~~~~~~----  116 (217)
                      .+...  -.+--..++.-+..+..+.    +          |.....+..+. +|++|||--|.+.+  .+.....    
T Consensus        82 l~~~~--niTtGkiY~~Vi~kER~GdYLG~TVQvIPHiT~eIk~~I~~~a~~~~DvvivEIGGTVGD--IEslpFlEAiR  157 (533)
T COG0504          82 LSKDN--NITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKDRIREAADSTADVVIVEIGGTVGD--IESLPFLEAIR  157 (533)
T ss_pred             CCCCC--CCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCEEC--CCCCHHHHHHH
T ss_conf             66667--843338899998777447756854688787626899999982578888899981771222--23367899999


Q ss_pred             HHHHHHCCC-EEEEEC--------CCCCHHHHHHHHHHHHHHCCCEEEEEEEC--CCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf             999974794-489705--------77650457999999998479907999976--9778005999998619989999478
Q gi|254780487|r  117 DLIERWQFP-IILCAR--------TSLGTINHSLLSLETLRNRNINIIGIAFI--GDSMPKVEETIVKIGRIPHLGRLPK  185 (217)
Q Consensus       117 dla~~l~~~-vILV~~--------~~~g~i~~~~l~~~~~~~~g~~i~GiIlN--~~~~~~~~~~le~~~~ipvLG~iP~  185 (217)
                      ++...++.. ++.+--        ++..----+--++..++.-|+.---+|.-  +...+..++-|.-++++|.-.+|.-
T Consensus       158 Q~~~e~g~~n~~fiH~tlvpyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc~V~~~~Vi~~  237 (533)
T COG0504         158 QLRLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEAVISA  237 (533)
T ss_pred             HHHHHHCCCCEEEEEEECCEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEC
T ss_conf             98767362568999973320361567557888427789999658996659994588799899999998638988885734


No 231
>cd04166 CysN_ATPS CysN_ATPS subfamily.  CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes.  ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate.  CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family.  CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP.  CysN is an example of lateral gene transfer followed by acquisition of new function.  In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=91.40  E-value=1.1  Score=23.77  Aligned_cols=136  Identities=17%  Similarity=0.087  Sum_probs=66.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      +|.|+| +-|.|||+++--|+.-..  ..        .+.....+........    -.++.+..........+..+.++
T Consensus         1 ~~vv~G-HVD~GKSTL~g~LL~~~g--~i--------~~~~~~~~~~~~~~~~----~~~~~~a~~lD~~~~ErerGiTI   65 (208)
T cd04166           1 RFLTCG-SVDDGKSTLIGRLLYDSK--SI--------FEDQLAALESKSCGTG----GEPLDLALLVDGLQAEREQGITI   65 (208)
T ss_pred             CEEEEE-CCCCCHHHHHHHHHHHCC--CC--------CHHHHHHHHHHHHHCC----CCCHHHHHHCCCCHHHHHCCCCE
T ss_conf             969997-488988899999999829--96--------7899999998875416----76300034346868788269794


Q ss_pred             HHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHH-HHHHCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             0788642-2328879992276555667675308999-997479-448970577650457999999998479907999976
Q gi|254780487|r   84 DPATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDL-IERWQF-PIILCARTSLGTINHSLLSLETLRNRNINIIGIAFI  160 (217)
Q Consensus        84 ~~~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dl-a~~l~~-~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN  160 (217)
                      +.++... ..+..+.||.-.|.-      ++ ..++ .....+ -.|||+++..|...++.--...++..|++-.-+.+|
T Consensus        66 d~~~~~f~~~~~~~~iiDtPGH~------df-i~nmi~gas~aD~ailVVda~~G~~~QT~eh~~~~~~lgi~~iIv~vN  138 (208)
T cd04166          66 DVAYRYFSTPKRKFIIADTPGHE------QY-TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVN  138 (208)
T ss_pred             EEEEEEEEECCCEEEEEECCCCH------HH-HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             10589998199269998789628------89-999999986377479999758887278999999999749983999998


Q ss_pred             C
Q ss_conf             9
Q gi|254780487|r  161 G  161 (217)
Q Consensus       161 ~  161 (217)
                      +
T Consensus       139 K  139 (208)
T cd04166         139 K  139 (208)
T ss_pred             C
T ss_conf             8


No 232
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.34  E-value=0.29  Score=27.34  Aligned_cols=30  Identities=23%  Similarity=0.200  Sum_probs=25.8

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             9998358987479999999999840486120
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      |++||- +|+|||+++-.|.+.|+..+.+.+
T Consensus         2 iW~tGL-sgsGKTTlA~~l~~~L~~~~~~~~   31 (149)
T cd02027           2 IWLTGL-SGSGKSTIARALEEKLFQRGRPVY   31 (149)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             898799-999999999999999998699759


No 233
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.25  E-value=1.1  Score=23.68  Aligned_cols=117  Identities=21%  Similarity=0.265  Sum_probs=66.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             299983589874799999999998404861-2013887380689999985578731144300145103478899985023
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK-PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI   82 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (217)
                      .++| |-++|+|||+.-+-++..+...+ | -.-+|  +++-.+.-.+.-....+..  +.+.+.........+..    
T Consensus        95 ~iLI-gGdPGIGKSTLLLQva~~lA~~~-~vLYVsG--EES~~QiklRA~RL~~~~~--~l~l~aEt~~e~I~~~l----  164 (456)
T COG1066          95 VILI-GGDPGIGKSTLLLQVAARLAKRG-KVLYVSG--EESLQQIKLRADRLGLPTN--NLYLLAETNLEDIIAEL----  164 (456)
T ss_pred             EEEE-CCCCCCCHHHHHHHHHHHHHHCC-CEEEEEC--CCCHHHHHHHHHHHCCCCC--CEEEEHHCCHHHHHHHH----
T ss_conf             7997-36898779899999999987059-5799967--7678999999998289964--55774112899999999----


Q ss_pred             CHHHHHHHHHHCCEEEEECCCCCCCCCCCC------------CCHHHHHHHHCCCEEEEECC-CCCHH
Q ss_conf             507886422328879992276555667675------------30899999747944897057-76504
Q gi|254780487|r   83 IDPATINPPDINDSIIIEGIGGLLVPLTTE------------YLFIDLIERWQFPIILCART-SLGTI  137 (217)
Q Consensus        83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~------------~~~~dla~~l~~~vILV~~~-~~g~i  137 (217)
                             -..+.|++||+..-.++++....            ....++||.-+.++++|... +.|.|
T Consensus       165 -------~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~I  225 (456)
T COG1066         165 -------EQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGAI  225 (456)
T ss_pred             -------HHCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf             -------8549978999654123026335799858999999999999998759739999888246632


No 234
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.13  E-value=0.82  Score=24.51  Aligned_cols=128  Identities=22%  Similarity=0.330  Sum_probs=63.3

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCC
Q ss_conf             999835898747999999999984-04861201388738068999998557873114430014510347-8899985023
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALN-AYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASP-HLAAEIDGVI   82 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~-~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   82 (217)
                      +||+|- ..+|||..+-.|+.... ...|  ++|+..-|  ...-+++.......  +..|  .....| ++..      
T Consensus         2 iLVtGG-~rSGKS~~AE~la~~~~~~~~Y--iAT~~~~D--~Em~~RI~~Hr~~R--~~~w--~TiE~~~~l~~------   66 (169)
T cd00544           2 ILVTGG-ARSGKSRFAERLAAELGGPVTY--IATAEAFD--DEMAERIARHRKRR--PAHW--RTIETPRDLVS------   66 (169)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHCCCCCEE--EECCCCCC--HHHHHHHHHHHHCC--CCCC--EEEECCCCHHH------
T ss_conf             899778-6636899999999845998199--97889889--89999999999668--9996--69963443999------


Q ss_pred             CHHHHHHHHHHCCEEEEECCCCCCCCCCCCC------C-------HHHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHHHH
Q ss_conf             5078864223288799922765556676753------0-------89999974794489705-77650457999999998
Q gi|254780487|r   83 IDPATINPPDINDSIIIEGIGGLLVPLTTEY------L-------FIDLIERWQFPIILCAR-TSLGTINHSLLSLETLR  148 (217)
Q Consensus        83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~~------~-------~~dla~~l~~~vILV~~-~~~g~i~~~~l~~~~~~  148 (217)
                         .... ....|.+|||..+.+........      .       ..+..+....++|+|++ .+.|.+-...++-.+.+
T Consensus        67 ---~l~~-~~~~~~vLiDclt~wl~N~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~ViVSnEVG~givp~~~~~R~f~d  142 (169)
T cd00544          67 ---ALKE-LDPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNEVGLGVVPENALGRRFRD  142 (169)
T ss_pred             ---HHHH-CCCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             ---9985-598885998607899999874133123667999999999999708997999965877898899889999999


Q ss_pred             HCC
Q ss_conf             479
Q gi|254780487|r  149 NRN  151 (217)
Q Consensus       149 ~~g  151 (217)
                      ..|
T Consensus       143 ~lG  145 (169)
T cd00544         143 ELG  145 (169)
T ss_pred             HHH
T ss_conf             999


No 235
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=91.13  E-value=1.1  Score=23.60  Aligned_cols=32  Identities=31%  Similarity=0.522  Sum_probs=25.6

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             9832999835898747999999999984048612
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKP   34 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP   34 (217)
                      |+ +|+|+|-+|| |--+=+++|+..|+..+++-
T Consensus         1 mk-kI~i~~GGTG-GHi~Palala~~L~~~g~ev   32 (359)
T PRK00726          1 MK-KILLAGGGTG-GHVFPALALAEELKKRGWEV   32 (359)
T ss_pred             CC-EEEEEECCCH-HHHHHHHHHHHHHHHCCCEE
T ss_conf             98-8999958868-99999999999998387989


No 236
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.09  E-value=0.78  Score=24.65  Aligned_cols=29  Identities=34%  Similarity=0.379  Sum_probs=24.8

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             832999835898747999999999984048
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      ...++|.|. +|+|||++...|++.+....
T Consensus         2 ~~~ill~G~-~GsGKTtl~~~la~~~~~~~   30 (148)
T smart00382        2 GEVILIVGP-PGSGKTTLARALARELGPPG   30 (148)
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHHHCCCC
T ss_conf             978999999-97029999999998726689


No 237
>PRK08181 transposase; Validated
Probab=90.98  E-value=0.31  Score=27.19  Aligned_cols=140  Identities=14%  Similarity=0.219  Sum_probs=62.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      -+++.|. ||+|||+++++|++..=..|+|-.-.   .-  ..++..+..                      +..++ ..
T Consensus       108 Nvil~Gp-~GtGKThLA~Alg~~A~~~G~~V~f~---~~--~~L~~~L~~----------------------a~~~~-~~  158 (269)
T PRK08181        108 NLLLFGP-PGGGKSHLAAAIGLALIENGWRVLFT---RT--TDLVQKLQV----------------------ARREL-QL  158 (269)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEE---EH--HHHHHHHHH----------------------HHHCC-CH
T ss_conf             0899899-99878899999999999879939997---89--999999999----------------------77558-39


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH--HCCCEEEEECCCC---C-HHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             07886422328879992276555667675308999997--4794489705776---5-0457999999998479907999
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIER--WQFPIILCARTSL---G-TINHSLLSLETLRNRNINIIGI  157 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~--l~~~vILV~~~~~---g-~i~~~~l~~~~~~~~g~~i~Gi  157 (217)
                      . ...+.-..+|++||.--|-..-.........++...  -+..+|+.++..-   + .+.+..++-..+.+.--+-.-+
T Consensus       159 ~-~~~~~l~~~dLLIiDe~G~~~~~~~~~~~lf~lI~~Rye~~S~IITSn~~~~~W~~~f~D~~la~AiLDRLvH~a~~i  237 (269)
T PRK08181        159 E-SAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIF  237 (269)
T ss_pred             H-HHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCEEEE
T ss_conf             9-999997444601220105667998999999999999857888899889997788775386889999999870152899


Q ss_pred             EECCCCCCCHHHHHHHH
Q ss_conf             97697780059999986
Q gi|254780487|r  158 AFIGDSMPKVEETIVKI  174 (217)
Q Consensus       158 IlN~~~~~~~~~~le~~  174 (217)
                      .+++.++ +.++.+++.
T Consensus       238 ~l~GeSy-R~k~a~~~k  253 (269)
T PRK08181        238 EMNVESY-RRRTALERK  253 (269)
T ss_pred             EECCCCC-CCHHHHHHH
T ss_conf             7558761-205678753


No 238
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=90.85  E-value=0.25  Score=27.72  Aligned_cols=26  Identities=35%  Similarity=0.528  Sum_probs=22.8

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             329998358987479999999999840
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      -.|+.+||. |||||+++-.|+++|+.
T Consensus        39 ~a~lf~g~r-g~gkt~~ar~~a~~lnc   64 (663)
T PRK08770         39 HAFLFTGTR-GVGKTTIARIFAKSLNC   64 (663)
T ss_pred             EEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf             047622799-88888999999998678


No 239
>KOG3347 consensus
Probab=90.80  E-value=0.21  Score=28.22  Aligned_cols=28  Identities=25%  Similarity=0.443  Sum_probs=22.5

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             32999835898747999999999984048
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      .-|+|||| +|+|||+.+-.|+..+.-.|
T Consensus         8 PNILvtGT-PG~GKstl~~~lae~~~~~~   35 (176)
T KOG3347           8 PNILVTGT-PGTGKSTLAERLAEKTGLEY   35 (176)
T ss_pred             CCEEEECC-CCCCCHHHHHHHHHHHCCCE
T ss_conf             88798679-99880259999999739856


No 240
>KOG3354 consensus
Probab=90.75  E-value=0.53  Score=25.70  Aligned_cols=57  Identities=19%  Similarity=0.249  Sum_probs=33.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWK   65 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~   65 (217)
                      .|+|.|+ +|+|||++.-.|...|+..|+    -|..-.+.+..-....+.+....+.-||.
T Consensus        14 ~i~vmGv-sGsGKSTigk~L~~~l~~~F~----dgDd~Hp~~NveKM~~GipLnD~DR~pWL   70 (191)
T KOG3354          14 VIVVMGV-SGSGKSTIGKALSEELGLKFI----DGDDLHPPANVEKMTQGIPLNDDDRWPWL   70 (191)
T ss_pred             EEEEEEC-CCCCHHHHHHHHHHHHCCCCC----CCCCCCCHHHHHHHHCCCCCCCCCCCHHH
T ss_conf             5999835-887744599999998588624----55557987889988369988853211799


No 241
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.73  E-value=0.26  Score=27.66  Aligned_cols=26  Identities=35%  Similarity=0.461  Sum_probs=22.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             329998358987479999999999840
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      -.|+.+||. |||||+++-.|+++|+.
T Consensus        39 haylf~g~r-g~gktt~ari~ak~lnc   64 (696)
T PRK06872         39 HAYLFSGTR-GVGKTSIARLFAKGLNC   64 (696)
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf             047511789-88888999999998678


No 242
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=90.71  E-value=1.3  Score=23.36  Aligned_cols=176  Identities=20%  Similarity=0.172  Sum_probs=83.3

Q ss_pred             CEEEEECC-CCCCCHHHHHHHHHHHHHCCCCC------------------CEECC--------CCCCCHHHHHHHHHCCC
Q ss_conf             32999835-89874799999999998404861------------------20138--------87380689999985578
Q gi|254780487|r    3 LRLVIVGT-DTSVGKTIFASALVHALNAYYWK------------------PIQSG--------MYEETDSKTIHRIGRIP   55 (217)
Q Consensus         3 ~~i~I~GT-~t~vGKT~vs~~L~~~l~~~~~K------------------Pv~~G--------~~~~~D~~~~~~~~~~~   55 (217)
                      |=|||+|. -|+.||-.+++.+.+.|+.+|+|                  |++-|        ...|-|-....+.....
T Consensus         1 Kyi~VtGGV~SglGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtM~P~eHGEVfV~~DG~EtDlDlG~YERFl~~~   80 (255)
T cd03113           1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN   80 (255)
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
T ss_conf             98999488201573089999999999978975889842565013899888454761778788761046664145435787


Q ss_pred             CCCCC-CCC-CCC---------------CCCHHHHHHHHHHHCCCHHHHHHH--HHHCCEEEEECCCCCCCCCCCCCCHH
Q ss_conf             73114-430-014---------------510347889998502350788642--23288799922765556676753089
Q gi|254780487|r   56 KSHII-PEK-WKL---------------RTPASPHLAAEIDGVIIDPATINP--PDINDSIIIEGIGGLLVPLTTEYLFI  116 (217)
Q Consensus        56 ~~~~~-~~~-~~~---------------~~~~~~~~~~~~~~~~i~~~~~~~--~~~~D~viIEGagg~~~~~~~~~~~~  116 (217)
                      .+... +.. -.+               +-..-||...+.     .....+.  ..++|++|||--|-+.+  .+..-..
T Consensus        81 lt~~~niTtGkiy~~VI~kER~G~YLGkTVQvIPHvTdeI-----k~~I~~~a~~~~~Di~ivEiGGTVGD--iEs~pFl  153 (255)
T cd03113          81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEI-----KERIRRVAEKSGADVVIVEIGGTVGD--IESLPFL  153 (255)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHH-----HHHHHHHHCCCCCCEEEEECCCEEEC--CCHHHHH
T ss_conf             7776775052889999877644676897068878736999-----99999860468997899976863522--4220799


Q ss_pred             HHHHH----HCC-CEEEEECC---CCCHH-----HHHHHHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHCCCCEEE
Q ss_conf             99997----479-44897057---76504-----579999999984799079999769--77800599999861998999
Q gi|254780487|r  117 DLIER----WQF-PIILCART---SLGTI-----NHSLLSLETLRNRNINIIGIAFIG--DSMPKVEETIVKIGRIPHLG  181 (217)
Q Consensus       117 dla~~----l~~-~vILV~~~---~~g~i-----~~~~l~~~~~~~~g~~i~GiIlN~--~~~~~~~~~le~~~~ipvLG  181 (217)
                      +-++.    ++. .+++|--.   .+++.     --+--++..++..|+.---++.-.  ...+..++-|.-++++|.=.
T Consensus       154 EAiRQl~~e~g~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lr~~GI~PDiivcRse~~l~~~~k~KIa~fc~V~~~~  233 (255)
T cd03113         154 EAIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEA  233 (255)
T ss_pred             HHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHH
T ss_conf             99999986439875799987630022787643466428999999975899887998057869978999999854998788


Q ss_pred             EECC
Q ss_conf             9478
Q gi|254780487|r  182 RLPK  185 (217)
Q Consensus       182 ~iP~  185 (217)
                      +|.-
T Consensus       234 Vi~~  237 (255)
T cd03113         234 VISA  237 (255)
T ss_pred             EEEC
T ss_conf             7986


No 243
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369    GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=90.59  E-value=0.2  Score=28.35  Aligned_cols=21  Identities=38%  Similarity=0.521  Sum_probs=15.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             2999835898747999999999984
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      -|+|||- |||||||+   |+.||+
T Consensus       247 IiLVTGP-TGSGKtTT---LYaaL~  267 (495)
T TIGR02533       247 IILVTGP-TGSGKTTT---LYAALS  267 (495)
T ss_pred             EEEECCC-CCCCHHHH---HHHHHH
T ss_conf             1884177-89852588---999998


No 244
>PRK06482 short chain dehydrogenase; Provisional
Probab=90.56  E-value=0.1  Score=30.14  Aligned_cols=29  Identities=17%  Similarity=0.280  Sum_probs=23.0

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             98329998358987479999999999840
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      |+|..||||+++|.|+.++-..+-++.++
T Consensus         1 M~Kv~lITGaSsGiG~ala~~l~~~G~~V   29 (276)
T PRK06482          1 MTKTWFITGASSGFGRGLTERLLARGDRV   29 (276)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEE
T ss_conf             99789991586599999999999889989


No 245
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=90.53  E-value=1.3  Score=23.26  Aligned_cols=20  Identities=35%  Similarity=0.630  Sum_probs=10.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHH
Q ss_conf             299983589874799999999
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALV   24 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~   24 (217)
                      .++|+|+ +|+|||+.++-++
T Consensus        26 ~~LV~G~-pGsGKTtla~QfL   45 (501)
T PRK09302         26 PTLVSGT-AGTGKTLFALQFL   45 (501)
T ss_pred             EEEEEEC-CCCCHHHHHHHHH
T ss_conf             7999838-9999999999999


No 246
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=90.52  E-value=0.27  Score=27.52  Aligned_cols=26  Identities=35%  Similarity=0.505  Sum_probs=22.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             329998358987479999999999840
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      -.|+.+||. |||||+++-.|+++|+.
T Consensus        39 ~a~l~~g~r-g~gkt~~ar~~ak~lnc   64 (705)
T PRK05648         39 HAYLFTGTR-GVGKTTIARIIAKCLNC   64 (705)
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf             046500789-88898999999998677


No 247
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=90.41  E-value=1.2  Score=23.47  Aligned_cols=136  Identities=15%  Similarity=0.121  Sum_probs=62.4

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      +|.++| +-|.|||+.+--|+..+..          .++.....+...+....    ...+.+..........+..+..+
T Consensus         9 ~i~~~G-hVD~GKSTL~G~Ll~~~g~----------v~~~~~~~~~~~~~~~g----~~~~~~a~~~D~~~~Er~rGiTi   73 (443)
T PTZ00141          9 NLVVIG-HVDSGKSTTTGHLIYKLGG----------IDKRTIEKFEKESAEMG----KGSFKYAWVLDKLKAERERGITI   73 (443)
T ss_pred             EEEEEC-CCCCCHHHHHHHHHHHCCC----------CCHHHHHHHHHHHHHHC----CCCCEEHHHHCCCHHHHHCCCEE
T ss_conf             999994-7798288889999987388----------46889999988888717----87200044530776676367107


Q ss_pred             HHHHHHHH-HHCCEEEEECCCC-CCCC-CCCCCCHHHHHHHHCCCEEEEECCCCCHHH-------HHHHHHHHHHHCCCE
Q ss_conf             07886422-3288799922765-5566-767530899999747944897057765045-------799999999847990
Q gi|254780487|r   84 DPATINPP-DINDSIIIEGIGG-LLVP-LTTEYLFIDLIERWQFPIILCARTSLGTIN-------HSLLSLETLRNRNIN  153 (217)
Q Consensus        84 ~~~~~~~~-~~~D~viIEGagg-~~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~i~-------~~~l~~~~~~~~g~~  153 (217)
                      +.++.... ....+.++.-.|. -|.+ ...+.+.+|       -+|||+++..|...       ++.--+..++..|++
T Consensus        74 dv~~~~f~t~~~~~~iiD~PGH~~fi~nmi~Gas~aD-------~ailvVdA~~G~~e~gf~~~gQTreH~~i~~~lgv~  146 (443)
T PTZ00141         74 DIALWKFETPKYYYTVIDAPGHRDFIKNMITGTSQAD-------VALLVVPAEVGGFEGAFSKEGQTREHALLAFTLGVK  146 (443)
T ss_pred             EEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHCCCC-------EEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             3479999439889999989972888999996341077-------589999867785213466678639999999973997


Q ss_pred             EEEEEECC
Q ss_conf             79999769
Q gi|254780487|r  154 IIGIAFIG  161 (217)
Q Consensus       154 i~GiIlN~  161 (217)
                      -.-|.+|+
T Consensus       147 ~iIVaVNK  154 (443)
T PTZ00141        147 QIIVGINK  154 (443)
T ss_pred             EEEEEEEE
T ss_conf             59999996


No 248
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=90.32  E-value=1.4  Score=23.15  Aligned_cols=138  Identities=20%  Similarity=0.173  Sum_probs=75.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      ++.++| +-|.||++..--|+.-++.-+          +.-...++.-+.......  ..+.|........+.+..+.+|
T Consensus        29 ~~v~~G-hVD~GKSTl~GrlL~~~~~v~----------~~~~~~~~~~s~~~g~~~--~~~~~a~l~D~l~~ERe~GiTI   95 (475)
T PRK05124         29 RFLTCG-SVDDGKSTLIGRLLHDTKQIY----------EDQLASLHNDSKRHGTQG--EKLDLALLVDGLQAEREQGITI   95 (475)
T ss_pred             EEEEEC-CCCCCHHHHHHHHHHHCCCCC----------HHHHHHHHHHHHHHCCCC--CCEEEEEEECCCHHHHHCCCEE
T ss_conf             999990-557977888899999819978----------899999999999828877--7222444205998898669716


Q ss_pred             HHHHHHHH-HHCCEEEEECCCC-CCCC-CCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             07886422-3288799922765-5566-7675308999997479448970577650457999999998479907999976
Q gi|254780487|r   84 DPATINPP-DINDSIIIEGIGG-LLVP-LTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFI  160 (217)
Q Consensus        84 ~~~~~~~~-~~~D~viIEGagg-~~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN  160 (217)
                      +.++.... ++..++|+.-.|. -|.+ +..+.+++|       -.|||++++.|...++.--...++..|++=.-|.+|
T Consensus        96 dva~~~f~t~~r~~~i~DaPGH~~f~~NMitGas~aD-------~aiLvVdA~~G~~~QTreH~~i~~llGI~~iIVaVN  168 (475)
T PRK05124         96 DVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCD-------LAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVN  168 (475)
T ss_pred             EEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCC-------EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             9567899538768999737963877888988887678-------899999898894788899999998659985999985


Q ss_pred             C
Q ss_conf             9
Q gi|254780487|r  161 G  161 (217)
Q Consensus       161 ~  161 (217)
                      +
T Consensus       169 K  169 (475)
T PRK05124        169 K  169 (475)
T ss_pred             C
T ss_conf             0


No 249
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=90.17  E-value=0.36  Score=26.74  Aligned_cols=27  Identities=30%  Similarity=0.379  Sum_probs=23.4

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             8329998358987479999999999840
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      +.+|+-+|+. |+|||+++..++++++.
T Consensus        43 ~~aylf~G~r-G~GKTt~Ari~ak~lnc   69 (507)
T PRK06645         43 AGGYLLTGIR-GVGKTTSARIIAKAVNC   69 (507)
T ss_pred             CCEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf             6347745879-97889999999999679


No 250
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.16  E-value=0.35  Score=26.83  Aligned_cols=28  Identities=36%  Similarity=0.423  Sum_probs=24.0

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             83299983589874799999999998404
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAY   30 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~   30 (217)
                      +.+|+.+|+. |||||+++-.|+++++..
T Consensus        45 ~~a~l~~g~r-g~gktt~ari~a~~lnc~   72 (600)
T PRK09111         45 AQAFMLTGVR-GVGKTTTARILARALNYK   72 (600)
T ss_pred             CCEEEEECCC-CCCHHHHHHHHHHHHCCC
T ss_conf             2047645789-878999999999996698


No 251
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.12  E-value=0.32  Score=27.08  Aligned_cols=26  Identities=35%  Similarity=0.524  Sum_probs=23.3

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             329998358987479999999999840
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      ..|+.+||. |||||+++-.|+++|+.
T Consensus        39 haylf~G~r-GvGKTt~ari~Ak~lnc   64 (721)
T PRK12323         39 HAYLFTGTR-GVGKTTLSRILAKSLNC   64 (721)
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf             447502799-88898999999999768


No 252
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=90.06  E-value=0.46  Score=26.07  Aligned_cols=29  Identities=34%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             329998358987479999999999840486
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      +.+++.|. +|+|||+++++++..+...|+
T Consensus       106 ~nl~l~G~-~G~GKthLa~Ai~~~l~~~g~  134 (254)
T COG1484         106 ENLVLLGP-PGVGKTHLAIAIGNELLKAGI  134 (254)
T ss_pred             CCEEEECC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf             82899899-998799999999999998398


No 253
>PRK08017 short chain dehydrogenase; Provisional
Probab=90.04  E-value=0.82  Score=24.50  Aligned_cols=33  Identities=15%  Similarity=0.279  Sum_probs=23.9

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             98329998358987479999999999840486120138
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG   38 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G   38 (217)
                      |+|.++|||.++|+|+-+     ++.|-..|++-+.++
T Consensus         1 M~K~vlITGassGIG~a~-----A~~la~~G~~V~~~~   33 (256)
T PRK08017          1 MQKSVLITGCSSGIGLES-----ALELKRQGFRVLAGC   33 (256)
T ss_pred             CCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEE
T ss_conf             997899965876899999-----999998799999996


No 254
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily.  Translocation is mediated by EF-G (also called translocase).  The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA.  This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule.  EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit.  The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G.  On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit.  To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it.  The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well.  The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site.  This group
Probab=90.03  E-value=1.4  Score=23.00  Aligned_cols=80  Identities=11%  Similarity=-0.041  Sum_probs=44.1

Q ss_pred             HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCC--CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC-CC-C---
Q ss_conf             328879992276555667675308999997479--4489705776504579999999984799079999769-77-8---
Q gi|254780487|r   92 DINDSIIIEGIGGLLVPLTTEYLFIDLIERWQF--PIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG-DS-M---  164 (217)
Q Consensus        92 ~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~--~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~-~~-~---  164 (217)
                      +++-+-||...|..       ....++.+.|.+  -.|+|.++..|.-.++....+.++.++++..-+ +|+ +. .   
T Consensus        62 ~~~~inliDTPG~~-------DF~~e~~~aL~v~D~Av~Vida~~GVe~~T~~~w~~~~~~~iP~i~f-INKmDr~~ad~  133 (268)
T cd04170          62 KGHKINLIDTPGYA-------DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIF-INKMDRERADF  133 (268)
T ss_pred             CCEEEEEEECCCCH-------HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE-EECCCCCCCCH
T ss_conf             99799998698975-------79999999840478399994187547687999999999859998999-97878789964


Q ss_pred             CCHHHHHHHHCCCCE
Q ss_conf             005999998619989
Q gi|254780487|r  165 PKVEETIVKIGRIPH  179 (217)
Q Consensus       165 ~~~~~~le~~~~ipv  179 (217)
                      ...-+.+++..+.++
T Consensus       134 ~~~l~~i~~~lg~~~  148 (268)
T cd04170         134 DKTLAALQEAFGRPV  148 (268)
T ss_pred             HHHHHHHHHHHCCCE
T ss_conf             779999999868984


No 255
>PRK08939 primosomal protein DnaI; Reviewed
Probab=90.00  E-value=0.46  Score=26.06  Aligned_cols=28  Identities=29%  Similarity=0.322  Sum_probs=12.5

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             32999835898747999999999984048
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      |.+|+.|. .|+|||++.+++++.|...+
T Consensus       158 kGlyl~G~-~G~GKTyL~~aian~La~~g  185 (306)
T PRK08939        158 KGLYLYGD-FGVGKTYLLAAIANELAKKG  185 (306)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHHHCC
T ss_conf             77889899-99989999999999999869


No 256
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=89.99  E-value=0.39  Score=26.55  Aligned_cols=11  Identities=45%  Similarity=0.640  Sum_probs=3.4

Q ss_pred             CCCHHHHHHHH
Q ss_conf             87479999999
Q gi|254780487|r   13 SVGKTIFASAL   23 (217)
Q Consensus        13 ~vGKT~vs~~L   23 (217)
                      |+|||+++.+|
T Consensus       402 gsGKsTiA~al  412 (568)
T PRK05537        402 GAGKSTIAKAL  412 (568)
T ss_pred             CCCHHHHHHHH
T ss_conf             88776999999


No 257
>PRK07667 uridine kinase; Provisional
Probab=89.96  E-value=0.32  Score=27.05  Aligned_cols=27  Identities=30%  Similarity=0.302  Sum_probs=21.4

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             9998358987479999999999840486
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      |=|+|- |++|||+++..|++.|+..+.
T Consensus        17 IgIaG~-sgSGKTTla~~L~~~l~~~~~   43 (190)
T PRK07667         17 LGIDGL-SRSGKTTFVANLKENMKQEGI   43 (190)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf             997798-978899999999999866598


No 258
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.86  E-value=0.36  Score=26.76  Aligned_cols=26  Identities=38%  Similarity=0.487  Sum_probs=22.8

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             329998358987479999999999840
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      .+|+.+||. |+|||+++-.|+++|+.
T Consensus        39 haylf~G~r-G~GKtt~ari~ak~lnc   64 (643)
T PRK07994         39 HAYLFSGTR-GVGKTSIARLLAKGLNC   64 (643)
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf             348745899-88888999999999679


No 259
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=89.84  E-value=0.37  Score=26.64  Aligned_cols=27  Identities=37%  Similarity=0.538  Sum_probs=23.0

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             8329998358987479999999999840
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      ...|+.+||. |||||+++..|+++|+.
T Consensus        38 ~haylf~G~r-GvGKTt~Ari~Ak~lNC   64 (704)
T PRK08691         38 HHAYLLTGTR-GVGKTTIARILAKSLNC   64 (704)
T ss_pred             CCEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf             5237502789-87888999999999679


No 260
>PRK00131 aroK shikimate kinase; Reviewed
Probab=89.81  E-value=0.44  Score=26.20  Aligned_cols=29  Identities=21%  Similarity=0.389  Sum_probs=24.5

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             329998358987479999999999840486
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      +.||+.|. +|+|||+|.-.|++.|...|+
T Consensus         5 ~nI~liG~-~GsGKTtvgk~LA~~L~~~fi   33 (175)
T PRK00131          5 PNIVLIGM-MGAGKSTIGRLLAKRLGYEFI   33 (175)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHCCCCC
T ss_conf             80898889-999989999999999596902


No 261
>KOG2825 consensus
Probab=89.79  E-value=0.29  Score=27.38  Aligned_cols=25  Identities=28%  Similarity=0.399  Sum_probs=18.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             32999835898747999999999984
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      |-||| |-.-|||||++|+-|+--+.
T Consensus        20 KwifV-GGKGGVGKTTcs~sLAvqla   44 (323)
T KOG2825          20 KWIFV-GGKGGVGKTTCSCSLAVQLA   44 (323)
T ss_pred             EEEEE-CCCCCCCCCCHHHHHHHHHH
T ss_conf             69997-67677676531268999986


No 262
>PRK07004 replicative DNA helicase; Provisional
Probab=89.63  E-value=1.5  Score=22.80  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             299983589874799999999998
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      -++|.|..+++|||..++-+++-.
T Consensus       214 dLiIIAARPsmGKTafAlniA~n~  237 (460)
T PRK07004        214 ELIIVAGRPSMGKTAFSMNIGEYV  237 (460)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             579997368764269999999999


No 263
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539   Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution.   EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta).   This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO).   More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=89.39  E-value=0.85  Score=24.40  Aligned_cols=126  Identities=19%  Similarity=0.221  Sum_probs=77.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             89874799999999998404861201388738068999998557873114430014510347889998502350788642
Q gi|254780487|r   11 DTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDPATINP   90 (217)
Q Consensus        11 ~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   90 (217)
                      |-|.||++++--|+.          ++|.   .|...+........ ..-...+.|..........++.+.+|+.++.+.
T Consensus        15 HVD~GKST~~G~Lly----------~~G~---I~~~~~eK~~kEa~-e~GK~~F~fa~V~D~Lk~ERERGvTID~A~~KF   80 (445)
T TIGR00483        15 HVDHGKSTLVGRLLY----------KAGA---IDEQLLEKLKKEAQ-EKGKASFEFAWVMDRLKEERERGVTIDVAHKKF   80 (445)
T ss_pred             EEECCCCHHHHHHHH----------HCCC---CCHHHHHHHHHHHH-HCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHC
T ss_conf             540885026677775----------4289---65899999987575-518730367654311000001562243344541


Q ss_pred             H-HHCCEEEEECCCC--CCCCCCCCCCHHHHHHHHCCCEEEEECCCCC-----------HHHHHHHHHHHHHHCCCEEEE
Q ss_conf             2-3288799922765--5566767530899999747944897057765-----------045799999999847990799
Q gi|254780487|r   91 P-DINDSIIIEGIGG--LLVPLTTEYLFIDLIERWQFPIILCARTSLG-----------TINHSLLSLETLRNRNINIIG  156 (217)
Q Consensus        91 ~-~~~D~viIEGagg--~~~~~~~~~~~~dla~~l~~~vILV~~~~~g-----------~i~~~~l~~~~~~~~g~~i~G  156 (217)
                      . .+|.+.||+..|.  .--.+..+.|.||       ..|||.+...+           +-.|.+|    .+..|++-+-
T Consensus        81 eT~KY~~TivDcPGHRDFiKNMITGaSQAD-------aAvLv~~v~~~~~~ag~~~~pQTrEH~~L----a~TLGi~Qli  149 (445)
T TIGR00483        81 ETDKYEVTIVDCPGHRDFIKNMITGASQAD-------AAVLVVAVDDGEFEAGISVQPQTREHVFL----ARTLGINQLI  149 (445)
T ss_pred             CCCCEEEEEEECCCCCHHHHHCCCCCCCCC-------EEEEEEECCCCCCCCCEEECCCCHHHHHH----HHHHCCEEEE
T ss_conf             788516999846987013431126675124-------27999952544102401217860577888----7750320453


Q ss_pred             EEECC
Q ss_conf             99769
Q gi|254780487|r  157 IAFIG  161 (217)
Q Consensus       157 iIlN~  161 (217)
                      |-+|+
T Consensus       150 VAiNK  154 (445)
T TIGR00483       150 VAINK  154 (445)
T ss_pred             EEECC
T ss_conf             33102


No 264
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.37  E-value=0.43  Score=26.26  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=19.7

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             98329998358987479999999999
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHA   26 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~   26 (217)
                      |++-|+|.|- ||+|||++.-+|...
T Consensus         1 mG~LivvsgP-SGaGK~Tli~~l~~~   25 (184)
T PRK10078          1 MGKLIWLMGP-SGSGKDSLLAALRQR   25 (184)
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHC
T ss_conf             9709999899-869999999999844


No 265
>PRK00023 cmk cytidylate kinase; Provisional
Probab=89.36  E-value=0.36  Score=26.75  Aligned_cols=30  Identities=33%  Similarity=0.346  Sum_probs=22.3

Q ss_pred             CCCEEE--EECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             983299--9835898747999999999984048
Q gi|254780487|r    1 MKLRLV--IVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         1 M~~~i~--I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      |.+.+.  |=|+ +++|||+++-.|++.|.-.|
T Consensus         1 m~~~iIIaIDGp-agSGKST~ak~lA~~L~~~y   32 (225)
T PRK00023          1 MMKAPVIAIDGP-AGSGKGTVAKILAKKLGFHY   32 (225)
T ss_pred             CCCCCEEEEECC-CCCCHHHHHHHHHHHHCCCE
T ss_conf             998978996589-86787899999999939887


No 266
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=89.30  E-value=0.43  Score=26.30  Aligned_cols=27  Identities=30%  Similarity=0.402  Sum_probs=22.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             3299983589874799999999998404
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAY   30 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~   30 (217)
                      +.+++.|. +|+|||+++..+++.+...
T Consensus        20 ~~ill~Gp-pGtGKT~la~~ia~~~~~~   46 (151)
T cd00009          20 KNLLLYGP-PGTGKTTLARAIANELFRP   46 (151)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHCCC
T ss_conf             80899899-9988659999999971213


No 267
>PRK05636 replicative DNA helicase; Provisional
Probab=89.29  E-value=1.6  Score=22.65  Aligned_cols=24  Identities=25%  Similarity=0.491  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             299983589874799999999998
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      .++|.|..+++|||+.++.+++..
T Consensus       268 ~LiIiAARPsmGKTalAlnia~n~  291 (507)
T PRK05636        268 QMIIVAARPGVGKSTIALDFMRSA  291 (507)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             679997378786689999999999


No 268
>cd04168 TetM_like Tet(M)-like subfamily.  Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria.  Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site.  This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative.  Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G.  EF-G and Tet(M) compete for binding on the ribosomes.  Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind.  Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity.  These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=89.26  E-value=1.6  Score=22.63  Aligned_cols=61  Identities=18%  Similarity=0.179  Sum_probs=36.5

Q ss_pred             HHCCEEEEECCCCCCCCCCCCCCHHHHHHH---HCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             328879992276555667675308999997---4794489705776504579999999984799079999769
Q gi|254780487|r   92 DINDSIIIEGIGGLLVPLTTEYLFIDLIER---WQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG  161 (217)
Q Consensus        92 ~~~D~viIEGagg~~~~~~~~~~~~dla~~---l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~  161 (217)
                      +++-+-+|...|..       ....+..+.   .+ -+|+|+++..|--.++...+++++.++++.. +.+|+
T Consensus        62 ~~~~~n~iDtPG~~-------dF~~e~~~al~~~D-~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~i-ifiNK  125 (237)
T cd04168          62 EDTKVNLIDTPGHM-------DFIAEVERSLSVLD-GAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNK  125 (237)
T ss_pred             CCEEEEEEECCCCH-------HHHHHHHHHHHHCC-CEEEEEECCCCCCCCHHHHHHHHHHCCCCEE-EEEEC
T ss_conf             99879998898846-------56668988976348-1699996588822344999999998599859-98624


No 269
>PRK07524 hypothetical protein; Provisional
Probab=89.09  E-value=1.6  Score=22.65  Aligned_cols=60  Identities=13%  Similarity=0.272  Sum_probs=34.4

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf             794489705776504579999999984799079999769778005999998619989999478
Q gi|254780487|r  123 QFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPKVEETIVKIGRIPHLGRLPK  185 (217)
Q Consensus       123 ~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~~~~le~~~~ipvLG~iP~  185 (217)
                      +.+||++++.  |+...+...+..+.+.++++.-||+|+......+...+.. +.+-.|+-|.
T Consensus       425 ~r~vi~i~GD--Gsf~m~~~eL~Ta~r~~lpi~iiV~NN~gyg~i~~~~~~~-~~~~~~~~~~  484 (534)
T PRK07524        425 ERPVVCLVGD--GGLQFTLPELASAVEADLPLVVLLWNNQGYGEIRRYMVAR-DIEPVGVDPY  484 (534)
T ss_pred             CCCEEEEECC--HHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHH-CCCCCCCCCC
T ss_conf             9978999872--6875419999999997859189999798325999999862-7886557789


No 270
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=89.05  E-value=0.46  Score=26.09  Aligned_cols=26  Identities=35%  Similarity=0.515  Sum_probs=22.8

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             329998358987479999999999840
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      ..|+.+||. |||||+++-.|+++|+.
T Consensus        39 haylf~G~r-GvGKTt~aRi~Ak~lnC   64 (816)
T PRK07003         39 HAYLFTGTR-GVGKTTLSRIFAKALNC   64 (816)
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf             147511789-88888999999998678


No 271
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149   This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=89.03  E-value=0.39  Score=26.55  Aligned_cols=23  Identities=39%  Similarity=0.676  Sum_probs=15.3

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             999835898747999999999984
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      |+|.| +||+||||.+-+|+.-..
T Consensus       142 Ilv~G-GTGSGKTTLaNAlla~I~  164 (315)
T TIGR02782       142 ILVVG-GTGSGKTTLANALLAEIA  164 (315)
T ss_pred             EEEEC-CCCCCHHHHHHHHHHHHH
T ss_conf             89981-458857999999999885


No 272
>PRK06762 hypothetical protein; Provisional
Probab=89.02  E-value=0.54  Score=25.67  Aligned_cols=27  Identities=33%  Similarity=0.476  Sum_probs=21.0

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             9832999835898747999999999984
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      |+|-|.|=|- |++|||+++.+|=+.+-
T Consensus         1 mt~LIiiRGN-SgSGKtT~Ak~L~~~~G   27 (166)
T PRK06762          1 MTTLIIIRGN-SGSGKTTIAKQLQERLG   27 (166)
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHHHC
T ss_conf             9528999788-88887899999999868


No 273
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.87  E-value=0.47  Score=26.04  Aligned_cols=31  Identities=35%  Similarity=0.490  Sum_probs=23.0

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHC-------CCCCCEE
Q ss_conf             9998358987479999999999840-------4861201
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNA-------YYWKPIQ   36 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~-------~~~KPv~   36 (217)
                      |=|+|. |++|||+++-.|.+.+..       .||||..
T Consensus         2 IgIaG~-S~SGKTTla~~L~~~l~~~~iI~qDdyYk~~~   39 (187)
T cd02024           2 VGISGV-TNSGKTTLAKLLQRILPNCCVIHQDDFFKPED   39 (187)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf             899688-88759999999999879988971544678843


No 274
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364    Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=88.83  E-value=0.36  Score=26.74  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=19.6

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             998358987479999999999840
Q gi|254780487|r    6 VIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         6 ~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      ||+|. |||||+|..+++.|.+-.
T Consensus       153 LiCG~-TGSGKSTl~AaiY~~~l~  175 (374)
T TIGR02525       153 LICGE-TGSGKSTLAAAIYRHCLE  175 (374)
T ss_pred             EECCC-CCCCHHHHHHHHHHHHCC
T ss_conf             22177-897289999999998507


No 275
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.80  E-value=0.37  Score=26.66  Aligned_cols=19  Identities=47%  Similarity=0.742  Sum_probs=6.9

Q ss_pred             EEEECCCCCCCHHHHHHHHH
Q ss_conf             99983589874799999999
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALV   24 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~   24 (217)
                      |+|+|. ||+|||+..-+|+
T Consensus       163 ilI~G~-TgSGKTTll~aL~  181 (332)
T PRK13900        163 IIISGG-TSTGKTTFTNAAL  181 (332)
T ss_pred             EEEECC-CCCCHHHHHHHHH
T ss_conf             999888-8988999999998


No 276
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155   This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase  and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=88.76  E-value=0.44  Score=26.20  Aligned_cols=25  Identities=40%  Similarity=0.640  Sum_probs=20.6

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             83299983589874799999999998
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      +|-|.|+|- ||+||||..=+|++-+
T Consensus       158 ~knIii~GG-TgSGKTTf~kal~~~I  182 (328)
T TIGR02788       158 RKNIIISGG-TGSGKTTFLKALVKEI  182 (328)
T ss_pred             CCEEEEEEC-CCCHHHHHHHHHHHCC
T ss_conf             891999906-8971899999997327


No 277
>PRK05993 short chain dehydrogenase; Provisional
Probab=88.74  E-value=0.82  Score=24.51  Aligned_cols=33  Identities=27%  Similarity=0.511  Sum_probs=24.7

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             98329998358987479999999999840486120138
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG   38 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G   38 (217)
                      |.|.++|||.++|+|+-     +++.|-..|++-+.++
T Consensus         3 m~K~vlITGassGIG~a-----lA~~la~~G~~V~~~~   35 (277)
T PRK05993          3 MKRSILITGCSSGIGAY-----CAHALQKRGWRVFATC   35 (277)
T ss_pred             CCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEE
T ss_conf             98689992568699999-----9999998799999997


No 278
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=88.71  E-value=0.52  Score=25.73  Aligned_cols=42  Identities=31%  Similarity=0.526  Sum_probs=31.1

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHH
Q ss_conf             9832999835898747999999999984048612013887380689999985
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIG   52 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~   52 (217)
                      |++.||..|- .|+|||+|.-.|++.|...++         |.|..+-+...
T Consensus         1 ~~~~IvLiG~-mGaGKSTIGr~LAk~L~~~F~---------D~D~~Ie~~~g   42 (172)
T COG0703           1 RNMNIVLIGF-MGAGKSTIGRALAKALNLPFI---------DTDQEIEKRTG   42 (172)
T ss_pred             CCCCEEEECC-CCCCHHHHHHHHHHHCCCCCC---------CCHHHHHHHHC
T ss_conf             9961899717-999776899999998199802---------24699999979


No 279
>PRK12735 elongation factor Tu; Reviewed
Probab=88.63  E-value=1.8  Score=22.36  Aligned_cols=121  Identities=13%  Similarity=0.093  Sum_probs=60.9

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf             99835898747999999999984048612013887380689999985578731144300145103478899985023507
Q gi|254780487|r    6 VIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDP   85 (217)
Q Consensus         6 ~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   85 (217)
                      +++--|-|.|||+.+-.|...+...+-+-..    ...+                         ...+...+..+.+++.
T Consensus        15 i~~~GHVD~GKSTL~g~Lt~~~~~~~~~~~~----~~~~-------------------------~D~~~eEr~rGiTid~   65 (396)
T PRK12735         15 VGTIGHVDHGKTTLTAAITTVLAKKGGGEAK----AYDQ-------------------------IDNAPEEKARGITINT   65 (396)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCC----CHHH-------------------------HCCCHHHHCCCEEEEE
T ss_conf             9999426885898999986145452464312----2122-------------------------1166567437737985


Q ss_pred             HHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             88642-23288799922765556676753089999974794-489705776504579999999984799079999769
Q gi|254780487|r   86 ATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFP-IILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG  161 (217)
Q Consensus        86 ~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~-vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~  161 (217)
                      .+... ..+..+.+|.-+|.      .++.--=++...+++ ++||+++..|...++.--+..++..|++..-|.+|+
T Consensus        66 ~~~~fet~~~~~~~iD~PGH------e~fiknMI~Ga~~aD~alLVV~A~~G~~~QTrEHl~l~~~lgv~~~iV~vnK  137 (396)
T PRK12735         66 SHVEYETANRHYAHVDCPGH------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNK  137 (396)
T ss_pred             EEEEEECCCEEEEEEECCCH------HHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             69999739805999836866------8877666410042567999998687875316999999998399858999987


No 280
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.49  E-value=0.6  Score=25.37  Aligned_cols=27  Identities=33%  Similarity=0.492  Sum_probs=22.3

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             832999835898747999999999984048
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      .+.|-||||+   |||++|..+.+.|+..+
T Consensus        89 ~~~I~ITGTN---GKsTtt~li~~iL~~~g  115 (401)
T PRK03815         89 PFSIWISGTN---GKTTTTQMLTHLLEDFG  115 (401)
T ss_pred             CCCEEEECCC---CHHHHHHHHHHHHHHCC
T ss_conf             8748998477---77899999999998669


No 281
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=88.38  E-value=1.9  Score=22.26  Aligned_cols=50  Identities=24%  Similarity=0.268  Sum_probs=34.1

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHC
Q ss_conf             29998358987479999999999840486120138873806899999855
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGR   53 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~   53 (217)
                      -++|.|..++.|||..++-++.-+-..+-|||.--..+-+--+...+...
T Consensus       197 dLiilAaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~eql~~R~Ls  246 (435)
T COG0305         197 DLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEEQLVMRLLS  246 (435)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHC
T ss_conf             77997168999758999999999998558975999826799999997534


No 282
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=88.33  E-value=0.51  Score=25.82  Aligned_cols=26  Identities=31%  Similarity=0.452  Sum_probs=22.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             329998358987479999999999840
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      -.|+.+||. |||||+++-.|+++|+.
T Consensus        39 haylf~G~r-GvGKTt~ARi~Ak~lNC   64 (717)
T PRK08853         39 HAYLFSGTR-GVGKTTIGRLFAKGLNC   64 (717)
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf             057610889-88898999999998678


No 283
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB.  This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.25  E-value=0.51  Score=25.80  Aligned_cols=26  Identities=31%  Similarity=0.466  Sum_probs=21.9

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             832999835898747999999999984
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      .+.|+|+|. ||+|||+...+|++.+.
T Consensus        25 ~~nIlIsG~-tGSGKTTll~al~~~i~   50 (186)
T cd01130          25 RKNILISGG-TGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCCEEEECC-CCCCHHHHHHHHHHHCC
T ss_conf             998999899-99989999999996133


No 284
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=88.20  E-value=1.9  Score=22.19  Aligned_cols=126  Identities=13%  Similarity=0.043  Sum_probs=52.8

Q ss_pred             CEEEEECCCCCCCHHHHHHHHH-HHH----HCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCC-HHH-HH
Q ss_conf             3299983589874799999999-998----4048612013887380689999985578731144-30014510-347-88
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALV-HAL----NAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIP-EKWKLRTP-ASP-HL   74 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~-~~l----~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~~   74 (217)
                      |.++..=|+.|=|||+.++|++ |++    |+..++ |-.|......-..++ .. ........ .+..+..+ ..+ ..
T Consensus        21 kGlI~VYTGdGKGKTTAAlGlalRA~G~G~rV~ivQ-FlKg~~~~ge~~~~~-~~-~~~~~~~~g~~~~~~~~~~~e~~~   97 (178)
T PRK07414         21 EGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQ-FLKGGIQQGPDQPIQ-LG-QNLDWVRCDLPRCLDTPHLDESEN   97 (178)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE-EEECCCCCCHHHHHH-HC-CCCEEEECCCCCCCCCCCCCHHHH
T ss_conf             417999957999808999999999953998799999-755897301689997-26-896899747775466888889999


Q ss_pred             HHHHHHCCCHHHHHH-HHHHCCEEEEECCCCC-CCCCCCCCCHHHHHHH--HCCCEEEEECCC
Q ss_conf             999850235078864-2232887999227655-5667675308999997--479448970577
Q gi|254780487|r   75 AAEIDGVIIDPATIN-PPDINDSIIIEGIGGL-LVPLTTEYLFIDLIER--WQFPIILCARTS  133 (217)
Q Consensus        75 ~~~~~~~~i~~~~~~-~~~~~D~viIEGagg~-~~~~~~~~~~~dla~~--l~~~vILV~~~~  133 (217)
                      .+..+...  .+... .+..+|++|.+-.... .-+........++.+.  -+..|||-++.-
T Consensus        98 ~a~~~~~~--~a~~~l~~g~~DlvVLDEi~~Al~~gll~~eeVi~~L~~rP~~~evVLTGR~a  158 (178)
T PRK07414         98 KALQELWQ--YTQQVVDEGKYELVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM  158 (178)
T ss_pred             HHHHHHHH--HHHHHHHCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             99999999--99999868898889970368998769925999999998189998899969999


No 285
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=88.18  E-value=0.59  Score=25.40  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=9.8

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             99983589874799999999998
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      ++|+|. ||+|||+..-+|+..+
T Consensus       142 ilIsG~-TGSGKTT~l~all~~i  163 (283)
T pfam00437       142 ILVSGG-TGSGKTTLLYALLNEI  163 (283)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHC
T ss_conf             999889-9998899999999840


No 286
>PRK06921 hypothetical protein; Provisional
Probab=88.14  E-value=0.67  Score=25.04  Aligned_cols=28  Identities=21%  Similarity=0.281  Sum_probs=21.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHH-HCCCC
Q ss_conf             299983589874799999999998-40486
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHAL-NAYYW   32 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l-~~~~~   32 (217)
                      .++..|. +|+|||+.+.+++..| +..|.
T Consensus       118 ~l~f~G~-~G~GKThLa~aIa~~Ll~~~~~  146 (265)
T PRK06921        118 SIALLGQ-PGSGKTHLLTAAANELMRKKGV  146 (265)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHHHHCCC
T ss_conf             2799728-9898899999999999996297


No 287
>PRK13949 shikimate kinase; Provisional
Probab=88.13  E-value=0.59  Score=25.42  Aligned_cols=30  Identities=33%  Similarity=0.537  Sum_probs=24.2

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             98329998358987479999999999840486
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      |+ +|+..|- +|+|||++.-.|++.+...++
T Consensus         1 Mk-~I~LiG~-mGsGKstiGk~La~~l~~~fi   30 (169)
T PRK13949          1 MA-RIFLVGY-MGAGKTTLGKALARELGLSFI   30 (169)
T ss_pred             CC-CEEEECC-CCCCHHHHHHHHHHHHCCCEE
T ss_conf             98-3899799-999889999999999599979


No 288
>PRK13947 shikimate kinase; Provisional
Probab=88.06  E-value=0.59  Score=25.40  Aligned_cols=30  Identities=27%  Similarity=0.448  Sum_probs=24.5

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             98329998358987479999999999840486
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      |+ .||..|- +|+|||++.-.|++.+...++
T Consensus         1 mk-nI~LiG~-mGsGKTtiGk~La~~L~~~fi   30 (171)
T PRK13947          1 MK-NIVLIGF-MGTGKTTVGKKVATTLSFGFI   30 (171)
T ss_pred             CC-CEEEECC-CCCCHHHHHHHHHHHHCCCEE
T ss_conf             98-5899799-999889999999999796989


No 289
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=87.98  E-value=1.8  Score=22.41  Aligned_cols=129  Identities=19%  Similarity=0.193  Sum_probs=54.7

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHH-HHH----HCCCCCCEECCCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCCHHHH-H
Q ss_conf             83299983589874799999999-998----404861201388738068999998557873-1144300145103478-8
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALV-HAL----NAYYWKPIQSGMYEETDSKTIHRIGRIPKS-HIIPEKWKLRTPASPH-L   74 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~-~~l----~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~   74 (217)
                      .+.+.+.=|+.|=|||+-++|++ |++    |+..++=++ |.-....-..+... ..... .-....+.+.+..... .
T Consensus        27 ~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiK-g~~~~GE~~~~~~~-~~~v~~~~~~~g~tw~~~~~~~d~  104 (198)
T COG2109          27 EKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIK-GGWKYGEEAALEKF-GLGVEFHGMGEGFTWETQDREADI  104 (198)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEE-CCCCHHHHHHHHHH-CCCEEEEECCCCEECCCCCCHHHH
T ss_conf             1676999826998834799999999843897799999962-68621178999861-553259965884237776717789


Q ss_pred             HHHHHHCCCHHHHH-HHHHHCCEEEEECCCCCCCCCCCC-CCHHHHHHHHC-----CCEEEEECCCCCHH
Q ss_conf             99985023507886-422328879992276555667675-30899999747-----94489705776504
Q gi|254780487|r   75 AAEIDGVIIDPATI-NPPDINDSIIIEGIGGLLVPLTTE-YLFIDLIERWQ-----FPIILCARTSLGTI  137 (217)
Q Consensus        75 ~~~~~~~~i~~~~~-~~~~~~D~viIEGagg~~~~~~~~-~~~~dla~~l~-----~~vILV~~~~~g~i  137 (217)
                      ++.......  +.. ..+..+|++|..-.--   .+..+ .+..++...|+     ..||+-++.-...+
T Consensus       105 ~aa~~~w~~--a~~~l~~~~ydlviLDEl~~---al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~l  169 (198)
T COG2109         105 AAAKAGWEH--AKEALADGKYDLVILDELNY---ALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPEL  169 (198)
T ss_pred             HHHHHHHHH--HHHHHHCCCCCEEEEEHHHH---HHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHH
T ss_conf             999999999--99997388878899721268---887388879999999955998767999799999899


No 290
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=87.96  E-value=2  Score=22.09  Aligned_cols=161  Identities=14%  Similarity=0.103  Sum_probs=83.4

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHH-HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             299983589874799999999998404861201388738068-9999985578731144300145103478899985023
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDS-KTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI   82 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (217)
                      +|.++| +-|.||++..--|+.-.+.-+           .|- ..+...+.......  ..+.|..-.....+.+..+.+
T Consensus         9 ~~~~~G-~VD~GKSTliGrlL~dt~~i~-----------~d~~~~~~~~s~~~g~~~--~~~~~a~l~D~l~~EreqGiT   74 (613)
T PRK05506          9 RFITCG-SVDDGKSTLIGRLLYDSKMIF-----------EDQLAALERDSKKVGTQG--DEIDLALLVDGLAAEREQGIT   74 (613)
T ss_pred             EEEEEC-CCCCCHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHHCCCC--CCEEEEEECCCCHHHHHCCCE
T ss_conf             899993-667978889889999819967-----------899999999999818988--860354421488889855971


Q ss_pred             CHHHHHHHH-HHCCEEEEECCCCC-CCC-CCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             507886422-32887999227655-566-767530899999747944897057765045799999999847990799997
Q gi|254780487|r   83 IDPATINPP-DINDSIIIEGIGGL-LVP-LTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAF  159 (217)
Q Consensus        83 i~~~~~~~~-~~~D~viIEGagg~-~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIl  159 (217)
                      |+.++.... .+..++|+...|.- |.. +..+-+++|       -.|||.+++.|...++---...+...|++=.-+.+
T Consensus        75 IDva~~~F~t~~r~~~i~DaPGH~~y~rNMitgAs~ad-------~AilliDa~~G~~~QTrrH~~i~~llGI~~iivaV  147 (613)
T PRK05506         75 IDVAYRYFSTPKRKFIVADTPGHEQYTRNMATGASTAD-------LAIILVDARKGVLTQTRRHSFIASLLGIRHIVLAV  147 (613)
T ss_pred             EEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCC-------EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             68567788438705999428967989989998786538-------79999988879515518999999872987599998


Q ss_pred             CC-----CCCCCHHHH---HH---HHCCCCEEEEECC
Q ss_conf             69-----778005999---99---8619989999478
Q gi|254780487|r  160 IG-----DSMPKVEET---IV---KIGRIPHLGRLPK  185 (217)
Q Consensus       160 N~-----~~~~~~~~~---le---~~~~ipvLG~iP~  185 (217)
                      |+     +......+.   +.   +..+++-.-.||-
T Consensus       148 NKMDlV~y~~~~f~~I~~~~~~~~~~l~~~~~~~IPI  184 (613)
T PRK05506        148 NKMDLVDYDQEVFDRIVADYLAFAAKLGLTDVTFIPI  184 (613)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             5201247819999999999999996579988759967


No 291
>KOG0635 consensus
Probab=87.95  E-value=0.55  Score=25.60  Aligned_cols=27  Identities=33%  Similarity=0.342  Sum_probs=23.4

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             2999835898747999999999984048
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      .|+|||- +++||++++++|-++|-.++
T Consensus        33 viWiTGL-SgSGKStlACaL~q~L~qrg   59 (207)
T KOG0635          33 VIWITGL-SGSGKSTLACALSQALLQRG   59 (207)
T ss_pred             EEEEECC-CCCCCHHHHHHHHHHHHHCC
T ss_conf             8997425-77880259999999998658


No 292
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=87.92  E-value=0.65  Score=25.13  Aligned_cols=42  Identities=21%  Similarity=0.438  Sum_probs=29.8

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCC
Q ss_conf             83299983589874799999999998404861201388738068999998557
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRI   54 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~   54 (217)
                      +|.||..|- +|+|||+|.-.|++.+...++         |.|... ....+.
T Consensus         4 kknI~LiG~-mGsGKstvgk~LA~~l~~~fi---------D~D~~I-e~~~g~   45 (172)
T PRK05057          4 KRNIFLVGP-MGAGKSTIGRQLAQQLNMEFY---------DSDQEI-EKRTGA   45 (172)
T ss_pred             CCCEEEECC-CCCCHHHHHHHHHHHHCCCEE---------ECHHHH-HHHHCC
T ss_conf             882898899-999889999999999699968---------780999-999798


No 293
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=87.91  E-value=2  Score=22.07  Aligned_cols=20  Identities=25%  Similarity=0.497  Sum_probs=15.0

Q ss_pred             EEEECCCCCCCHHHHHHHHHH
Q ss_conf             999835898747999999999
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVH   25 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~   25 (217)
                      |-|. .|.|+|||+.|=.|+.
T Consensus        13 iaIi-~H~dAGKTTLtE~lL~   32 (526)
T PRK00741         13 FAII-SHPDAGKTTLTEKLLL   32 (526)
T ss_pred             EEEE-CCCCCCHHHHHHHHHH
T ss_conf             9999-3789898999999997


No 294
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939    This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=87.89  E-value=1.6  Score=22.69  Aligned_cols=132  Identities=15%  Similarity=0.058  Sum_probs=57.6

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHCCCCCCE--ECCCCCC-CHHHHHHHHHCCC-CCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             98358987479999999999840486120--1388738-0689999985578-731144300145103478899985023
Q gi|254780487|r    7 IVGTDTSVGKTIFASALVHALNAYYWKPI--QSGMYEE-TDSKTIHRIGRIP-KSHIIPEKWKLRTPASPHLAAEIDGVI   82 (217)
Q Consensus         7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv--~~G~~~~-~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (217)
                      |-|- .++|||.+|+-++-.--..|-|-|  -|   +. =-...+++++... .++...........  ++...+.+ .-
T Consensus        17 iYGp-~G~GKTn~c~~~a~~a~~~Gk~v~YiDT---EGGLS~ER~~q~~~~~~~D~e~~~~~~iv~~--~~~f~eQ~-~a   89 (223)
T TIGR02237        17 IYGP-PGSGKTNICLILAVNAARQGKKVVYIDT---EGGLSPERFKQIAEDRALDPERVLSNVIVFE--VFDFDEQE-VA   89 (223)
T ss_pred             EECC-CCCCHHHHHHHHHHHHHHCCCCEEEEEC---CCCCHHHHHHHHHHCCCCCHHHHHCCEEEEC--CCCHHHHH-HH
T ss_conf             8758-9986789999999999861895899962---8983289999986305889888841535523--53567899-99


Q ss_pred             CHHHHHHHH---HHCCEEEEECCCCCCCCCCCCCC--HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             507886422---32887999227655566767530--8999997479448970577650457999999998479907999
Q gi|254780487|r   83 IDPATINPP---DINDSIIIEGIGGLLVPLTTEYL--FIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGI  157 (217)
Q Consensus        83 i~~~~~~~~---~~~D~viIEGagg~~~~~~~~~~--~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~Gi  157 (217)
                      |.....-+.   +..+++||...-++|---..+..  +.++.+.|+              ++.-+-...++++  +|+-|
T Consensus        90 i~~~~~~~~~~G~~~~LvVvDs~t~~YRle~~~d~nk~~~~~~~l~--------------~Ql~~Ll~lArk~--~~AVv  153 (223)
T TIGR02237        90 IQKTSKLIDRDGDKADLVVVDSFTALYRLERSDDRNKQISLNRELA--------------RQLTLLLSLARKK--DLAVV  153 (223)
T ss_pred             HHHHHHHHHCCCCEEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHH--------------HHHHHHHHHHHHC--CCCEE
T ss_conf             9999999860688331488815334542025786025679999999--------------9999999998764--99789


Q ss_pred             EECC
Q ss_conf             9769
Q gi|254780487|r  158 AFIG  161 (217)
Q Consensus       158 IlN~  161 (217)
                      |-|+
T Consensus       154 iTNQ  157 (223)
T TIGR02237       154 ITNQ  157 (223)
T ss_pred             EEEE
T ss_conf             9711


No 295
>cd01886 EF-G Elongation factor G (EF-G) subfamily.  Translocation is mediated by EF-G (also called translocase).  The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA.  This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule.  EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit.  The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit.  To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it.  The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well.  The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site.  This group conta
Probab=87.83  E-value=2  Score=22.04  Aligned_cols=20  Identities=20%  Similarity=0.278  Sum_probs=14.9

Q ss_pred             EECCCCCCCHHHHHHHHHHHH
Q ss_conf             983589874799999999998
Q gi|254780487|r    7 IVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         7 I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      |.| |.|+|||+.+=+|+..-
T Consensus         4 i~g-H~gaGKTtL~EalL~~a   23 (270)
T cd01886           4 IIA-HIDAGKTTTTERILYYT   23 (270)
T ss_pred             EEE-CCCCCHHHHHHHHHHHC
T ss_conf             996-89999889999999866


No 296
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=87.77  E-value=1.9  Score=22.19  Aligned_cols=50  Identities=28%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCC
Q ss_conf             299983589874799999999998404861201388738068999998557
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRI   54 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~   54 (217)
                      .|+.+|. ||+|||.++-.|++.+...-.+-+........+...+....+.
T Consensus         5 ~~l~~GP-sGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~   54 (168)
T pfam07724         5 SFLFLGP-TGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGA   54 (168)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCC
T ss_conf             9998898-9989999999999996798534488557565425699987058


No 297
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=87.70  E-value=2.1  Score=21.99  Aligned_cols=110  Identities=19%  Similarity=0.147  Sum_probs=50.9

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE--CCC-CCCCHHHHHHHHHCCCC--CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99983589874799999999998404861201--388-73806899999855787--31144300145103478899985
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQ--SGM-YEETDSKTIHRIGRIPK--SHIIPEKWKLRTPASPHLAAEID   79 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~--~G~-~~~~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   79 (217)
                      +.|+|= -|+|||+.-..|++.. ..+.|..-  .-. ..+.|...++.......  +.-++|+. .........     
T Consensus         3 ~iitGF-LGsGKTTll~~ll~~~-~~~~~~avI~Ne~g~~~iD~~ll~~~~~~v~el~~GciCc~-~~~d~~~~l-----   74 (174)
T pfam02492         3 TVLTGF-LGSGKTTLLEHLLRDN-REGLKIAVIVNDFGETGIDAELLRETGAEIVELNNGCICCT-IREDLSMVL-----   74 (174)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCC-CCHHHHHHH-----
T ss_conf             999348-8788999999999844-48984799993365302079998706961899748866454-333699999-----


Q ss_pred             HCCCHHHHHH-HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECC
Q ss_conf             0235078864-223288799922765556676753089999974794-4897057
Q gi|254780487|r   80 GVIIDPATIN-PPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFP-IILCART  132 (217)
Q Consensus        80 ~~~i~~~~~~-~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~-vILV~~~  132 (217)
                           .++.. ...+.|+++||.+| +..|..    ..++...+... +|-|+++
T Consensus        75 -----~~l~~~~~~~~d~iiIE~sG-la~p~~----i~~~~~~~~~~~~i~vvDa  119 (174)
T pfam02492        75 -----EALLELKLPRLDLLFIETTG-LACPAP----VLDLRSDLGLDGVVTVVDV  119 (174)
T ss_pred             -----HHHHHCCCCCCCEEEEECCC-CCCHHH----HHHHHHCCCCCEEEEEEEC
T ss_conf             -----99985578999999995876-677077----7765320265459999972


No 298
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=87.68  E-value=2.1  Score=21.98  Aligned_cols=130  Identities=16%  Similarity=0.172  Sum_probs=58.2

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHH-HHH----HCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH-HH
Q ss_conf             83299983589874799999999-998----4048612013887380689999985578731144300145103478-89
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALV-HAL----NAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPH-LA   75 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~-~~l----~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   75 (217)
                      .+.+...=|+.|=|||+.++|++ |++    |+...+ |-.|.........++......-...- ..+.+.....+. ..
T Consensus         2 ~~G~i~iytG~GKGKTTAAlGlalRA~G~G~rV~ivQ-FlKg~~~~GE~~~l~~l~~v~~~~~g-~gf~~~~~~~~~d~~   79 (172)
T pfam02572         2 EKGLLIVYTGNGKGKSTAAFGMALRALGHGMRVGVVQ-FIKGKWETGEEAALEALPEVEWHVMG-EGFTWETQDRERDIA   79 (172)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE-EECCCCCCCHHHHHHHCCCCEEEECC-CCCCCCCCCCHHHHH
T ss_conf             7637999957999718899999999825998899999-95388776389999878996899788-998587888788999


Q ss_pred             HHHHHCCCHHHHHH-HHHHCCEEEEECCCCCCC-CCCCCCCHHHHHHH--HCCCEEEEECCCCC
Q ss_conf             99850235078864-223288799922765556-67675308999997--47944897057765
Q gi|254780487|r   76 AEIDGVIIDPATIN-PPDINDSIIIEGIGGLLV-PLTTEYLFIDLIER--WQFPIILCARTSLG  135 (217)
Q Consensus        76 ~~~~~~~i~~~~~~-~~~~~D~viIEGagg~~~-~~~~~~~~~dla~~--l~~~vILV~~~~~g  135 (217)
                      +..+.  ...+... .+..+|++|.+-...... +........++.+.  -+..|||-++.-..
T Consensus        80 ~a~~~--~~~a~~~l~~~~~dlvVLDEi~~ai~~gli~~~~v~~~l~~rp~~~evVlTGr~~p~  141 (172)
T pfam02572        80 AAREA--WEKAKEALASGSYDLVVLDELNYALKYGYLDLEEVLELLRNRPEGQHVVLTGRGAPP  141 (172)
T ss_pred             HHHHH--HHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf             99999--999999975889899973557999755996899999999828998779998999999


No 299
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=87.67  E-value=1.1  Score=23.63  Aligned_cols=41  Identities=24%  Similarity=0.215  Sum_probs=28.4

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHH--------HCCCCCCEECCCCCCCHH
Q ss_conf             299983589874799999999998--------404861201388738068
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHAL--------NAYYWKPIQSGMYEETDS   45 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l--------~~~~~KPv~~G~~~~~D~   45 (217)
                      -++|.|. |.+|||..+..|++.+        ++..|+-+.+|..+..+.
T Consensus         3 l~~I~Gp-T~~GKT~~ai~lA~~~g~~iis~D~~Q~y~el~igs~rp~~~   51 (232)
T pfam01745         3 LYLIWGA-TCTGKTAEAIALAKETGWPVIVLDRVQCCSQLATGSGRPLPA   51 (232)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCHH
T ss_conf             6899788-777716999999999599779620344300113677899979


No 300
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=87.64  E-value=0.81  Score=24.56  Aligned_cols=32  Identities=16%  Similarity=0.159  Sum_probs=26.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             32999835898747999999999984048612
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKP   34 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP   34 (217)
                      |-|-|+--.-|||||++++-|+++|...|+|-
T Consensus       105 ~VIav~N~KGGVGKTTtav~LA~~LA~~G~RV  136 (387)
T TIGR03453       105 QVIAVTNFKGGSGKTTTSAHLAQYLALRGYRV  136 (387)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf             08999788876569999999999999779988


No 301
>PRK06321 replicative DNA helicase; Provisional
Probab=87.56  E-value=2.1  Score=21.94  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=24.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             299983589874799999999998404861201
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ   36 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~   36 (217)
                      -++|.|..+++|||..++.+++..-...-+||.
T Consensus       227 dliviaaRPsmGKTalalnia~~~a~~~~~~v~  259 (472)
T PRK06321        227 NLMILAARPAMGKTALALNIAENFCFQNRLPVG  259 (472)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             579985389997799999999999985699469


No 302
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810    Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=87.47  E-value=0.47  Score=26.01  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=22.0

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             99983589874799999999998404861
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      +=||||+   |||+++-.++|-|+..|.+
T Consensus       491 V~vTGTN---GKTt~~RL~Ahil~~~G~~  516 (876)
T TIGR02068       491 VAVTGTN---GKTTTTRLVAHILKQTGKV  516 (876)
T ss_pred             EEEECCC---CCHHHHHHHHHHHHHCCCE
T ss_conf             8872689---8355788999999856982


No 303
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=87.46  E-value=0.6  Score=25.38  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=21.7

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             83299983589874799999999998
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      ++.+.|.|+ ||+|||+.+.-|++.+
T Consensus        23 ~rH~aIlg~-TGsGKS~tv~vLl~~l   47 (218)
T pfam01935        23 SRHFAILGS-TGSGKSNTVAVLLEEL   47 (218)
T ss_pred             HHHEEEECC-CCCCHHHHHHHHHHHH
T ss_conf             421478726-9997699999999999


No 304
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=87.39  E-value=0.53  Score=25.72  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=16.7

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             999835898747999999999984
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      ++.||. |||||||. +-|+-+||
T Consensus        34 ViltGP-SGSGKTTL-LtLiG~LR   55 (220)
T TIGR02982        34 VILTGP-SGSGKTTL-LTLIGGLR   55 (220)
T ss_pred             EEEECC-CCCCHHHH-HHHHHHHC
T ss_conf             984378-89846889-99887625


No 305
>PRK12736 elongation factor Tu; Reviewed
Probab=87.33  E-value=2.2  Score=21.86  Aligned_cols=119  Identities=15%  Similarity=0.129  Sum_probs=65.0

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf             98358987479999999999840486120138873806899999855787311443001451034788999850235078
Q gi|254780487|r    7 IVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDPA   86 (217)
Q Consensus         7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   86 (217)
                      ++--|-|.|||+.+-.|.+.+...+.+....             ....                ..+...+..+.+++..
T Consensus        16 ~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~-------------~~~~----------------D~~~eEr~rGiTid~~   66 (394)
T PRK12736         16 GTIGHVDHGKTTLTAAITKVLAERGLAQAKD-------------YASI----------------DAAPEEKARGITINTA   66 (394)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHCCCCHHHH-------------HHHH----------------CCCHHHHCCCCEEEEE
T ss_conf             9995128848989989750454506510222-------------2331----------------1665562478217841


Q ss_pred             HHHHH-HHCCEEEEECCCC-CCCC-CCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             86422-3288799922765-5566-76753089999974794489705776504579999999984799079999769
Q gi|254780487|r   87 TINPP-DINDSIIIEGIGG-LLVP-LTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG  161 (217)
Q Consensus        87 ~~~~~-~~~D~viIEGagg-~~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~  161 (217)
                      +.... ++..+.+|.-.|. -|.+ ...+.+.+|       -++||+++..|-..+|.--+..++..|++-.-|.+|+
T Consensus        67 ~~~~~t~~~~~~~iD~PGH~~fi~nmi~Ga~~~D-------~alLVV~A~~G~~~QT~EHl~l~~~lgv~~~IV~vnK  137 (394)
T PRK12736         67 HVEYETEKRHYAHVDCPGHADYVKNMITGAAQMD-------GAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNK  137 (394)
T ss_pred             EEEEECCCEEEEEEECCCCHHHHCCEEEEECCCC-------EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             8999728836999888972543110444353466-------5899998587746779999999998299915999988


No 306
>PRK05858 hypothetical protein; Provisional
Probab=87.14  E-value=2.2  Score=21.79  Aligned_cols=55  Identities=13%  Similarity=0.099  Sum_probs=30.8

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHCCCCE
Q ss_conf             794489705776504579999999984799079999769778005999998619989
Q gi|254780487|r  123 QFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPKVEETIVKIGRIPH  179 (217)
Q Consensus       123 ~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~~~~le~~~~ipv  179 (217)
                      +-+||.+++  .|+...+...+..+.++++++.-||+|+...-..+...+...+-.+
T Consensus       426 ~r~Vv~i~G--DG~f~m~~qEL~Ta~r~~lpv~ivV~NN~~yg~~~~~~~~~~g~~~  480 (543)
T PRK05858        426 QRQVVLLQG--DGAFGFSGMEWDTLVRHNVPVVSVIGNNGIWGLEKHPMEALYGYSV  480 (543)
T ss_pred             CCCEEEEEC--CHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHCCCCC
T ss_conf             994899988--5698756999999999786939999828625899999998639876


No 307
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=87.13  E-value=0.88  Score=24.33  Aligned_cols=27  Identities=22%  Similarity=0.380  Sum_probs=21.5

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             2999835898747999999999984048
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      -|+|+|. ||+|||+....|++.+....
T Consensus         3 liLitG~-TGSGKTTtl~all~~i~~~~   29 (198)
T cd01131           3 LVLVTGP-TGSGKSTTLAAMIDYINKNK   29 (198)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHCCCC
T ss_conf             8999899-99979999999998536378


No 308
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=87.06  E-value=2.2  Score=21.76  Aligned_cols=27  Identities=30%  Similarity=0.290  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      -|=||||+   |||+++-.+.+.|+..+.|
T Consensus       113 vigVTGTN---GKTTt~~~i~~il~~~g~~  139 (953)
T PRK11929        113 VVAVTGTN---GKTSCAQWLAQMLTRLGKP  139 (953)
T ss_pred             EEEEECCC---CHHHHHHHHHHHHHHCCCC
T ss_conf             89997999---7999999999999867998


No 309
>cd01127 TrwB Bacterial conjugation protein TrwB,  ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=87.05  E-value=0.94  Score=24.14  Aligned_cols=26  Identities=31%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             832999835898747999999999984
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      .+.++|.|+ ||+|||.+-..++....
T Consensus        42 ~~H~lv~G~-tGsGKT~~i~~li~~~~   67 (410)
T cd01127          42 EAHTMIIGT-TGTGKTTQIRELLASIR   67 (410)
T ss_pred             HCCEEEECC-CCCCHHHHHHHHHHHHH
T ss_conf             274799889-99988999999999999


No 310
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=87.04  E-value=0.72  Score=24.88  Aligned_cols=24  Identities=42%  Similarity=0.656  Sum_probs=17.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             3299983589874799999999998
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      +.|+|+|- ||+|||+..-+|+..+
T Consensus       145 ~nilVsGg-TGSGKTTllnaL~~~i  168 (323)
T PRK13833        145 LNIVISGG-TGSGKTTLANAVIAEI  168 (323)
T ss_pred             CCEEEECC-CCCCHHHHHHHHHHHH
T ss_conf             96899917-7775689999999864


No 311
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062   Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium:   ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate    Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=86.86  E-value=1.3  Score=23.16  Aligned_cols=47  Identities=26%  Similarity=0.231  Sum_probs=36.1

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHC-CCCCCEECCCCCCCHH-HHHHHH
Q ss_conf             29998358987479999999999840-4861201388738068-999998
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNA-YYWKPIQSGMYEETDS-KTIHRI   51 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~-~~~KPv~~G~~~~~D~-~~~~~~   51 (217)
                      =|.|=|-+ |+|||+.+-.|.+.|+. .+++-+-+-.|.++.. ..++..
T Consensus         4 fiviEGiD-GaGKTT~~~~l~~~l~~l~g~~~~~t~EPg~t~~ge~IR~~   52 (211)
T TIGR00041         4 FIVIEGID-GAGKTTQLNLLKKLLKELEGYKVLFTREPGGTPIGEKIREL   52 (211)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH
T ss_conf             58885115-87589999999999775138347887189998789999999


No 312
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer,  which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=86.65  E-value=2.4  Score=21.62  Aligned_cols=126  Identities=21%  Similarity=0.214  Sum_probs=54.1

Q ss_pred             EEEEECCCCCCCHHHHHHHHH-HHH----HCCCCCCEECCCCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCHHHHHHHH
Q ss_conf             299983589874799999999-998----40486120138873806899999855787311-443001451034788999
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALV-HAL----NAYYWKPIQSGMYEETDSKTIHRIGRIPKSHI-IPEKWKLRTPASPHLAAE   77 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~-~~l----~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   77 (217)
                      .++..=|+.|=|||+.++|++ |++    |+..++ |-.|......-..+....+...... ....+..... ..+....
T Consensus         3 Gli~vytG~GKGKTTAAlG~alRA~G~G~rV~ivQ-FlKg~~~~GE~~~l~~l~~i~~~~~g~~~~~~~~~~-~~~~~~a   80 (159)
T cd00561           3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ-FLKGGWKYGELKALERLPNIEIHRMGRGFFWTTEND-EEDIAAA   80 (159)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE-EECCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCC-HHHHHHH
T ss_conf             47999957999708999999999844999899999-815898755999998489968998899973227987-9999999


Q ss_pred             HHHCCCHHHHHHH-HHHCCEEEEECCCCC-CCCCCCCCCHHHHHHH--HCCCEEEEECCC
Q ss_conf             8502350788642-232887999227655-5667675308999997--479448970577
Q gi|254780487|r   78 IDGVIIDPATINP-PDINDSIIIEGIGGL-LVPLTTEYLFIDLIER--WQFPIILCARTS  133 (217)
Q Consensus        78 ~~~~~i~~~~~~~-~~~~D~viIEGagg~-~~~~~~~~~~~dla~~--l~~~vILV~~~~  133 (217)
                      .+.  ...+...+ +..+|++|.+-.... ..+........++.+.  -+..|||-++.-
T Consensus        81 ~~~--~~~a~~~l~~~~~dlvVLDEi~~a~~~gli~~~~v~~~l~~rp~~~evVlTGr~~  138 (159)
T cd00561          81 AEG--WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA  138 (159)
T ss_pred             HHH--HHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             999--9999999868898999736689999859917999999998489997899969999


No 313
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=86.62  E-value=2.4  Score=21.62  Aligned_cols=136  Identities=20%  Similarity=0.170  Sum_probs=62.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      +|.+.| +-|.|||+++--|+.-+          |..+......+.+.+....    ...+.+..........+..+.++
T Consensus         9 ~i~~~G-hVD~GKSTL~G~Ll~~~----------g~~~~~~~~~~~~~~~~~g----~~s~~~a~~~D~~~eEr~rGiTi   73 (426)
T PRK12317          9 NLAVIG-HVDHGKSTLVGRLLYET----------GAVDEHIIEEYEEEAKKKG----KESFKFAWVMDRLKEERERGVTI   73 (426)
T ss_pred             EEEEEE-ECCCCHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHCC----CCCCEEEEECCCCHHHHHCCCEE
T ss_conf             999995-22876888876898772----------9944899999998998648----77521432125786687558278


Q ss_pred             HHHHHHHH-HHCCEEEEECCCCC-CCC-CCCCCCHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             07886422-32887999227655-566-76753089999974794489705776--504579999999984799079999
Q gi|254780487|r   84 DPATINPP-DINDSIIIEGIGGL-LVP-LTTEYLFIDLIERWQFPIILCARTSL--GTINHSLLSLETLRNRNINIIGIA  158 (217)
Q Consensus        84 ~~~~~~~~-~~~D~viIEGagg~-~~~-~~~~~~~~dla~~l~~~vILV~~~~~--g~i~~~~l~~~~~~~~g~~i~GiI  158 (217)
                      +.++.... ++..+.+|.-+|.- |.+ ...+.+.+|       -++||++++.  |...++.--+..++..|++-.-|+
T Consensus        74 d~~~~~f~~~~~~~~iiD~PGH~~fi~nmi~Gas~~D-------~ailvV~A~~~~G~~~QT~eHl~l~~~lgi~~iiV~  146 (426)
T PRK12317         74 DLAHKKFETDKYYFTIIDCPGHRDFVKNMITGASQAD-------AAVLVVSARDAGGVMPQTREHVFLARTLGINQLIVA  146 (426)
T ss_pred             EEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCCC-------EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             8316999549816999878963667877874534677-------279999636566764778999999998099839999


Q ss_pred             ECC
Q ss_conf             769
Q gi|254780487|r  159 FIG  161 (217)
Q Consensus       159 lN~  161 (217)
                      +|+
T Consensus       147 vnK  149 (426)
T PRK12317        147 INK  149 (426)
T ss_pred             EEC
T ss_conf             953


No 314
>PRK02496 adk adenylate kinase; Provisional
Probab=86.56  E-value=0.92  Score=24.20  Aligned_cols=33  Identities=33%  Similarity=0.482  Sum_probs=24.5

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             98329998358987479999999999840486120138
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG   38 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G   38 (217)
                      |+ +|++.|- +|+||++.+..|+..+   ++.-+.+|
T Consensus         1 m~-riillG~-PGSGKgTqa~~L~~~~---~~~his~G   33 (185)
T PRK02496          1 MA-RLIFLGP-PGAGKGTQAVVLAEHL---QIPHISTG   33 (185)
T ss_pred             CE-EEEEECC-CCCCHHHHHHHHHHHH---CCEEECHH
T ss_conf             91-8999799-9999899999999996---99778888


No 315
>cd01890 LepA LepA subfamily.  LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome.  LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea.  This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont.  Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=86.35  E-value=2.5  Score=21.53  Aligned_cols=96  Identities=10%  Similarity=0.093  Sum_probs=53.0

Q ss_pred             CCEEEEECCCCCCCCCCCCCCHHHHHHHHC-C-CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC-----CC
Q ss_conf             887999227655566767530899999747-9-4489705776504579999999984799079999769778-----00
Q gi|254780487|r   94 NDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-F-PIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSM-----PK  166 (217)
Q Consensus        94 ~D~viIEGagg~~~~~~~~~~~~dla~~l~-~-~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~-----~~  166 (217)
                      +-+.+|+..|..      + ...++.+.+. + -++||+++..|.-.++.-.+..++..|+++. +++|+.-.     ..
T Consensus        67 ~~in~iDtPGh~------d-F~~~~~~al~~~D~allVVda~~Gv~~qT~~~~~~a~~~~~p~i-vviNKiD~~~ad~~~  138 (179)
T cd01890          67 YLLNLIDTPGHV------D-FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEII-PVINKIDLPSADPER  138 (179)
T ss_pred             EEEEEEECCCCC------C-CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCCCCHHH
T ss_conf             489999899864------5-17789889975442789986477873748999999987699889-998655567789999


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             59999986199899994788888887999999
Q gi|254780487|r  167 VEETIVKIGRIPHLGRLPKIDPIDPDVLHQKF  198 (217)
Q Consensus       167 ~~~~le~~~~ipvLG~iP~~~~~~~~~l~~~~  198 (217)
                      ..+.+++..++...-++| .+..+-+.+.+++
T Consensus       139 v~~~i~~~~g~~~~~~v~-vSA~~g~gv~~Ll  169 (179)
T cd01890         139 VKQQIEDVLGLDPSEAIL-VSAKTGLGVEDLL  169 (179)
T ss_pred             HHHHHHHHHCCCCCCEEE-EECCCCCCHHHHH
T ss_conf             999999986889767488-4378897989999


No 316
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=86.17  E-value=0.87  Score=24.35  Aligned_cols=31  Identities=26%  Similarity=0.408  Sum_probs=24.5

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             29998358987479999999999840486120138
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG   38 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G   38 (217)
                      +|++.|. +|+||++.+..|++.+   ++..+.+|
T Consensus         1 ri~l~G~-PGsGKgTqa~~La~~~---~~~~is~g   31 (194)
T cd01428           1 RILLLGP-PGSGKGTQAERLAKKY---GLPHISTG   31 (194)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHH---CCEEECHH
T ss_conf             9899899-9998799999999997---98467688


No 317
>PRK06483 short chain dehydrogenase; Provisional
Probab=86.09  E-value=2.5  Score=21.50  Aligned_cols=33  Identities=30%  Similarity=0.256  Sum_probs=24.2

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             98329998358987479999999999840486120138
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG   38 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G   38 (217)
                      |+|.++|||-++|+|+     ++++.|-..|.+=+.++
T Consensus         1 M~ktVlVTGas~GIG~-----aiA~~la~~Ga~Vvi~~   33 (236)
T PRK06483          1 MSAPILITGAGQRIGL-----ALAKHLLAQGQPVIVSY   33 (236)
T ss_pred             CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEE
T ss_conf             9987999789988999-----99999998899899995


No 318
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=86.02  E-value=0.93  Score=24.15  Aligned_cols=27  Identities=30%  Similarity=0.402  Sum_probs=23.1

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             8329998358987479999999999840
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      +.+++.+|+ .|+|||+++..++++++.
T Consensus        40 aHAYLF~GP-RGvGKTT~ARIfAKaLNC   66 (718)
T PRK07133         40 SHAYLFSGP-HGTGKTSVAKIFANALNC   66 (718)
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf             505862389-986889999999999679


No 319
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=85.89  E-value=2.6  Score=21.38  Aligned_cols=63  Identities=17%  Similarity=0.125  Sum_probs=37.7

Q ss_pred             HHCCEEEEECCCCCCCCCCCCCCHHHHHHHH-CCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             3288799922765556676753089999974-794-4897057765045799999999847990799997697
Q gi|254780487|r   92 DINDSIIIEGIGGLLVPLTTEYLFIDLIERW-QFP-IILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGD  162 (217)
Q Consensus        92 ~~~D~viIEGagg~~~~~~~~~~~~dla~~l-~~~-vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~  162 (217)
                      .++.+.+|..+|..       ....+..+.+ .++ +++|.++..|--.++.-.+..++..|+++. +++|+.
T Consensus        65 ~~~~i~~iDtPGh~-------~f~~~~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~~p~i-v~vNKi  129 (185)
T pfam00009        65 KKRHINIIDTPGHV-------DFTKEMIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLGVPII-VFINKM  129 (185)
T ss_pred             CCCEEEEEECCCCC-------CHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEE-EEEECC
T ss_conf             89368999899871-------439999999864656429998676853230999999998289879-999773


No 320
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=85.84  E-value=0.86  Score=24.37  Aligned_cols=24  Identities=25%  Similarity=0.602  Sum_probs=17.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             3299983589874799999999998
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      +.++|+|- ||+|||+...+|+..+
T Consensus       150 ~nilI~G~-TgsGKTTll~all~~i  173 (320)
T PRK13894        150 RNILVIGG-TGSGKTTLVNAIINEM  173 (320)
T ss_pred             CCEEEECC-CCCCHHHHHHHHHHHH
T ss_conf             75899858-8865689999998632


No 321
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=85.79  E-value=0.91  Score=24.21  Aligned_cols=36  Identities=31%  Similarity=0.382  Sum_probs=27.4

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC
Q ss_conf             9832999835898747999999999984048612013
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS   37 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~   37 (217)
                      |.|-|+..|- ||||||.++--|++.+.+=|.|-=+|
T Consensus        49 ~pkNILmIGP-TGvGKTeIARrLAkl~~aPFvkveAT   84 (442)
T PRK05201         49 TPKNILMIGP-TGVGKTEIARRLAKLANAPFIKVEAT   84 (442)
T ss_pred             CCCCEEEECC-CCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf             6431688788-88667899999999848985875213


No 322
>PRK09291 short chain dehydrogenase; Provisional
Probab=85.68  E-value=0.38  Score=26.61  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=24.1

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             98329998358987479999999999840486120138
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG   38 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G   38 (217)
                      |+|.++|||.++|.||.+     ++.|-..|++-+.++
T Consensus         1 MgK~vLITGAssGIGrai-----A~~la~~G~~Vi~~~   33 (257)
T PRK09291          1 MSKTILITGAGSGFGREV-----ALRLARKGHRVIAGV   33 (257)
T ss_pred             CCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEE
T ss_conf             999899968985899999-----999998799899996


No 323
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=85.68  E-value=0.91  Score=24.23  Aligned_cols=27  Identities=30%  Similarity=0.375  Sum_probs=22.7

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             8329998358987479999999999840
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      +.+|+-+|+. |+|||+++-.|+++++.
T Consensus        38 ~hayLf~Gpr-G~GKTs~Ari~akalnc   64 (541)
T PRK05563         38 AHAYLFCGTR-GTGKTSTAKIFAKAVNC   64 (541)
T ss_pred             CEEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf             2045303879-95899999999999579


No 324
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=85.63  E-value=0.92  Score=24.18  Aligned_cols=24  Identities=33%  Similarity=0.671  Sum_probs=20.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             3299983589874799999999998
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      ++|+|.|. +|+||||.+-.|++.+
T Consensus         1 ~riiilG~-pGaGK~T~A~~La~~~   24 (178)
T COG0563           1 MRILILGP-PGAGKSTLAKKLAKKL   24 (178)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHC
T ss_conf             97999899-9998899999999976


No 325
>KOG3308 consensus
Probab=85.57  E-value=1.7  Score=22.52  Aligned_cols=35  Identities=31%  Similarity=0.457  Sum_probs=24.7

Q ss_pred             CCCEEE--EECCCCCCCHHHHHHHHHHHHHC-------CCCCCEE
Q ss_conf             983299--98358987479999999999840-------4861201
Q gi|254780487|r    1 MKLRLV--IVGTDTSVGKTIFASALVHALNA-------YYWKPIQ   36 (217)
Q Consensus         1 M~~~i~--I~GT~t~vGKT~vs~~L~~~l~~-------~~~KPv~   36 (217)
                      |.|.|.  |.|. |++|||+++-.|.+.|..       .||||..
T Consensus         1 s~K~~ivgiSG~-TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~   44 (225)
T KOG3308           1 SMKTLIVGISGC-TNSGKTTLAKSLHRFFPGCSLIHQDDFYKPEN   44 (225)
T ss_pred             CCEEEEEEEECC-CCCCHHHHHHHHHHHCCCCEEECCCCCCCCHH
T ss_conf             961899986424-67877689999998736874640223467553


No 326
>PRK13973 thymidylate kinase; Provisional
Probab=85.53  E-value=2.7  Score=21.27  Aligned_cols=51  Identities=18%  Similarity=0.227  Sum_probs=35.4

Q ss_pred             CCCE-EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCC-HHHHHHHHH
Q ss_conf             9832-999835898747999999999984048612013887380-689999985
Q gi|254780487|r    1 MKLR-LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEET-DSKTIHRIG   52 (217)
Q Consensus         1 M~~~-i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~-D~~~~~~~~   52 (217)
                      |.-. |.+=|.+ |+|||+.+-.|...|+..++|-+.+..|..+ -...++...
T Consensus         1 MkG~fIv~EGiD-GsGKsTq~~~L~~~L~~~g~~v~~trePg~t~~~e~ir~~l   53 (216)
T PRK13973          1 MRGRFITFEGGE-GAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVL   53 (216)
T ss_pred             CCCEEEEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             982499988999-99899999999999997799579940989984089999998


No 327
>COG1160 Predicted GTPases [General function prediction only]
Probab=85.45  E-value=2.7  Score=21.25  Aligned_cols=69  Identities=13%  Similarity=0.179  Sum_probs=39.7

Q ss_pred             HCCEEEEECCC----CCCCCCCCCCCHHHHHHHH-CCCE-EEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             28879992276----5556676753089999974-7944-897057765045799999999847990799997697
Q gi|254780487|r   93 INDSIIIEGIG----GLLVPLTTEYLFIDLIERW-QFPI-ILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGD  162 (217)
Q Consensus        93 ~~D~viIEGag----g~~~~~~~~~~~~dla~~l-~~~v-ILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~  162 (217)
                      +..+.+|+.||    +--....+.++..+-.+.. .+.| +||.++..|-..+-.--..+..+.|..+. +++|+.
T Consensus       225 ~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~v-IvvNKW  299 (444)
T COG1160         225 GRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIV-IVVNKW  299 (444)
T ss_pred             CEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEE-EEEECC
T ss_conf             818999987787746641242688750546767865688999998887836889999999997589749-999753


No 328
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily.  EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes.  EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains.  This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha).  eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis.  EF-Tu can have no such role in bacteria.  In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene.  This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=85.31  E-value=2.8  Score=21.21  Aligned_cols=134  Identities=16%  Similarity=0.158  Sum_probs=61.3

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf             99835898747999999999984048612013887380689999985578731144300145103478899985023507
Q gi|254780487|r    6 VIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDP   85 (217)
Q Consensus         6 ~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   85 (217)
                      .|.| +.|.|||+++-.|+..+..          .........+..+....    ...+.|..........+..+.+++.
T Consensus         3 ~iiG-HvD~GKSTL~g~lL~~~g~----------i~~~~~~k~~~~~~~~g----k~s~~~a~~lD~~~~ErerGiTI~~   67 (219)
T cd01883           3 VVIG-HVDAGKSTTTGHLLYLLGG----------VDKRTIEKYEKEAKEMG----KGSFKYAWVLDTLKEERERGVTIDV   67 (219)
T ss_pred             EEEE-CCCCCHHHHHHHHHHHCCC----------CCHHHHHHHHHHHHHCC----CCCCEEEEEECCCHHHHHCCCCEEE
T ss_conf             9996-6899899999999998599----------76889999999998549----9875055661389879858925885


Q ss_pred             HHHHH-HHHCCEEEEECCCCC-CCC-CCCCCCHHHHHHHHCCCEEEEECCCCCHH-------HHHHHHHHHHHHCCCEEE
Q ss_conf             88642-232887999227655-566-76753089999974794489705776504-------579999999984799079
Q gi|254780487|r   86 ATINP-PDINDSIIIEGIGGL-LVP-LTTEYLFIDLIERWQFPIILCARTSLGTI-------NHSLLSLETLRNRNINII  155 (217)
Q Consensus        86 ~~~~~-~~~~D~viIEGagg~-~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~i-------~~~~l~~~~~~~~g~~i~  155 (217)
                      ++... .+++.+.||.-.|.- +.+ ...+.+.+|       -.|||+++..|..       .++.--+..++..|++-.
T Consensus        68 ~~~~f~~~~~~~~iiDtPGH~df~~~mi~g~~~ad-------~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~i  140 (219)
T cd01883          68 GLAKFETEKYRFTILDAPGHRDFVPNMITGASQAD-------VAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQL  140 (219)
T ss_pred             EEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCC-------EEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             89999849936999878972667889998775316-------68999985767510366777659999999998499748


Q ss_pred             EEEECC
Q ss_conf             999769
Q gi|254780487|r  156 GIAFIG  161 (217)
Q Consensus       156 GiIlN~  161 (217)
                      -|.+|+
T Consensus       141 IVavNK  146 (219)
T cd01883         141 IVAVNK  146 (219)
T ss_pred             EEEEEC
T ss_conf             999987


No 329
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=85.31  E-value=1.3  Score=23.27  Aligned_cols=29  Identities=31%  Similarity=0.494  Sum_probs=22.1

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      -+...|- +|||||++.-.+++++.+.|++
T Consensus       351 IlclvGp-PGvGKTSl~~sIA~al~r~f~r  379 (784)
T PRK10787        351 ILCLVGP-PGVGKTSLGQSIAKATGRKYVR  379 (784)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHCCCEEE
T ss_conf             7996469-9877246999999985898699


No 330
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=85.12  E-value=2.8  Score=21.15  Aligned_cols=178  Identities=16%  Similarity=0.132  Sum_probs=89.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE---------ECCC-CCCCHH-HHHHHHHCCCCCCCC--------CCC-
Q ss_conf             29998358987479999999999840486120---------1388-738068-999998557873114--------430-
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI---------QSGM-YEETDS-KTIHRIGRIPKSHII--------PEK-   63 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv---------~~G~-~~~~D~-~~~~~~~~~~~~~~~--------~~~-   63 (217)
                      .+=+.|.+.|+|-|+++.-++.+++...-+-+         .+|. .-+.|+ .-+.++...+.-...        -++ 
T Consensus       106 ~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~~~~  185 (366)
T COG4963         106 ELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTRLAS  185 (366)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf             89999605886668999999999864148738999768887612343078721458988609787607877789861688


Q ss_pred             --CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCC-CCHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf             --0145103478899985023507886422328879992276555667675-3089999974794489705776504579
Q gi|254780487|r   64 --WKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTE-YLFIDLIERWQFPIILCARTSLGTINHS  140 (217)
Q Consensus        64 --~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~-~~~~dla~~l~~~vILV~~~~~g~i~~~  140 (217)
                        -.+..+.++...-.............+...+|++|+.=. -...+.... ++.+|       .+++|+.-...++-.+
T Consensus       186 ~l~ll~a~~~~~~~~d~~~~~~~~Ll~~~~~~~~~vV~Dlp-~~~~~~t~~vL~~Sd-------~iviv~e~sl~slR~a  257 (366)
T COG4963         186 GLKLLAAPTELAKNYDLKTGAVERLLDLLRGSFDFVVVDLP-NIWTDWTRQVLSGSD-------EIVIVAEPSLASLRNA  257 (366)
T ss_pred             CCEEECCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEECCC-CCCCHHHHHHHHCCC-------EEEEEECCCHHHHHHH
T ss_conf             76330377445652153312699999976402883897189-766258999986288-------4999963638989999


Q ss_pred             HHHHHHHHHCC--CEEEEEEECCCCCCC--HHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             99999998479--907999976977800--59999986199899994788888
Q gi|254780487|r  141 LLSLETLRNRN--INIIGIAFIGDSMPK--VEETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       141 ~l~~~~~~~~g--~~i~GiIlN~~~~~~--~~~~le~~~~ipvLG~iP~~~~~  189 (217)
                      .--+..+++.+  -.-.-.|+|+...+.  ..+.+++..+++-++.+|....+
T Consensus       258 k~lld~l~~~r~~~~~p~lv~n~~~~~~~~~~~dl~~~~~i~~~~~~p~d~~~  310 (366)
T COG4963         258 KELLDELKRLRPNDPKPILVLNRVGVPKRPEPSDLEEILGIESLLVLPFDPAL  310 (366)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCHHCCCCCCCHH
T ss_conf             99999999737798895688652278889999999888488400136677054


No 331
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=84.96  E-value=1.4  Score=23.07  Aligned_cols=30  Identities=20%  Similarity=0.035  Sum_probs=24.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      .|=|+-=.-|||||++++-|+++|-..|+|
T Consensus       108 VIAVaN~KGGVGKTTTavnLA~~LAl~G~R  137 (387)
T PHA02519        108 VLAVMSHKGGVYKTSSAVHTAQWLALQGHR  137 (387)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             899861688776999999999999976996


No 332
>PRK04195 replication factor C large subunit; Provisional
Probab=84.91  E-value=1.1  Score=23.60  Aligned_cols=25  Identities=36%  Similarity=0.506  Sum_probs=21.3

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             32999835898747999999999984
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      |.++++|. +|+|||+++..|++-+.
T Consensus        41 k~lLL~GP-pGvGKTT~a~~lAk~~g   65 (403)
T PRK04195         41 KALLLYGP-PGVGKTSLAHALANDYG   65 (403)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHC
T ss_conf             46998893-99879999999999849


No 333
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=84.62  E-value=1.5  Score=22.91  Aligned_cols=30  Identities=17%  Similarity=0.078  Sum_probs=24.5

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      .|-|+-=.-|||||++++-|+++|-..|+|
T Consensus       108 VIAVaNqKGGvGKTTTavnLA~~LAl~G~R  137 (388)
T PRK13705        108 VIGVAAHKGGVYKTSVSVHLAQDLALKGLR  137 (388)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf             899952788855999999999999977990


No 334
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=84.46  E-value=3  Score=20.97  Aligned_cols=25  Identities=24%  Similarity=0.464  Sum_probs=20.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             32999835898747999999999984
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      +.+-|.|. ||+|||++.-.|+|-+.
T Consensus       368 e~vaiVG~-SGsGKSTL~~LL~r~yd  392 (575)
T PRK11160        368 EKVALLGR-TGCGKSTLLQLLTRAWD  392 (575)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHCCCC
T ss_conf             88999889-99759999999862367


No 335
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; InterPro: IPR005757    The tripeptide L-ananyl-gamma-D-glutamyl-meso-diaminopimelic acid is efficiently re-cycled during the formation of bacterial cell wall murein. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase is an essential enzyme in this process which links the tripeptide to UDP-N-acetylmuramate.; GO: 0016874 ligase activity, 0007047 cell wall organization and biogenesis.
Probab=84.41  E-value=1  Score=23.85  Aligned_cols=27  Identities=44%  Similarity=0.543  Sum_probs=24.2

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             999835898747999999999984048612
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKP   34 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP   34 (217)
                      +=|+||+   |||+++.-+..-|-..|+||
T Consensus       106 laV~GTH---GKTTT~~M~~WvLE~~G~~p  132 (459)
T TIGR01081       106 LAVAGTH---GKTTTASMLAWVLEQCGLKP  132 (459)
T ss_pred             EEEECCC---CCHHHHHHHHHHHHHCCCCC
T ss_conf             8950788---60468899999998637988


No 336
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=84.25  E-value=0.6  Score=25.34  Aligned_cols=33  Identities=27%  Similarity=0.256  Sum_probs=25.2

Q ss_pred             CEEEEEC---CCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             3299983---58987479999999999840486120
Q gi|254780487|r    3 LRLVIVG---TDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         3 ~~i~I~G---T~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      |-|+||+   |-.|-|||++|.||.++|+.-+.|.+
T Consensus        55 klilVTaitPTP~GEGKTTttIGL~~aL~~lgk~~~   90 (577)
T PRK13506         55 KLVIVTAVTPTPLGEGKTVTTIGLTQGLNALGQKVC   90 (577)
T ss_pred             EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf             499998568988989841109879999987198458


No 337
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=84.08  E-value=3.1  Score=20.87  Aligned_cols=137  Identities=15%  Similarity=0.103  Sum_probs=59.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      .|.++| +-|.|||+.+--|++.+..-          ++.....+.+.+....    ..++.+..........+..+..+
T Consensus         9 ni~~~G-hVD~GKSTL~G~Ll~~~~~v----------~~~~l~~~~~~~~~~g----~~s~~~a~~~D~~~~Er~rGiTi   73 (449)
T PTZ00336          9 NLVVVG-HVDAGKSTATGHLIYKCGGI----------DKRTIEKFEKEAAEIG----KASFKYAWVLDKLKAERERGITI   73 (449)
T ss_pred             EEEEEE-CCCCCHHHHHHHHHHHCCCC----------CHHHHHHHHHHHHHHC----CCCHHHHHHHCCCHHHHCCCEEE
T ss_conf             999992-77896888899999874884----------7899999999998718----75143254512772232287589


Q ss_pred             HHHHHHHHH-HCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECCCCCHHH-------HHHHHHHHHHHCCCEE
Q ss_conf             078864223-288799922765556676753089999974794-4897057765045-------7999999998479907
Q gi|254780487|r   84 DPATINPPD-INDSIIIEGIGGLLVPLTTEYLFIDLIERWQFP-IILCARTSLGTIN-------HSLLSLETLRNRNINI  154 (217)
Q Consensus        84 ~~~~~~~~~-~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~-vILV~~~~~g~i~-------~~~l~~~~~~~~g~~i  154 (217)
                      +.++..... ..-+.++.-.|.-      ++.--=++...+++ +|||+++..|...       ++.--+..++..|++-
T Consensus        74 d~~~~~f~t~~~~~~iiD~PGH~------~fi~nmi~Gas~aD~aiLVVdA~~G~~e~g~~~~gQTreHl~i~~~Lgv~~  147 (449)
T PTZ00336         74 DIALWKFESPKSVFTIIDAPGHR------DFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQ  147 (449)
T ss_pred             EEEEEEEECCCEEEEEEECCCHH------HHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCE
T ss_conf             86799997498489998689468------889999976500676799998787741035566775399999998669977


Q ss_pred             EEEEECC
Q ss_conf             9999769
Q gi|254780487|r  155 IGIAFIG  161 (217)
Q Consensus       155 ~GiIlN~  161 (217)
                      .-|.+|+
T Consensus       148 iiV~vNK  154 (449)
T PTZ00336        148 MVVCCNK  154 (449)
T ss_pred             EEEEEEC
T ss_conf             9999862


No 338
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=84.05  E-value=1.1  Score=23.76  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             2999835898747999999999984
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      .|+|-|| ||||||+++..|+.-|.
T Consensus       264 iILIGGa-SGvGKSTlAseLA~RLG  287 (492)
T PRK12337        264 HVLLGGV-SGTGKSVLAAELAYRLG  287 (492)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHC
T ss_conf             9996078-88668889999999609


No 339
>PRK06696 uridine kinase; Validated
Probab=84.00  E-value=1.5  Score=22.84  Aligned_cols=28  Identities=36%  Similarity=0.461  Sum_probs=23.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             29998358987479999999999840486
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      .|=|.|- +++|||+++-.|+..|+..+.
T Consensus        28 ~VgIdG~-~gSGKTTlA~~La~~L~~~G~   55 (227)
T PRK06696         28 RVAIDGI-TASGKTTFANELAEEIKKRGR   55 (227)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf             9997789-987879999999999974699


No 340
>CHL00071 tufA elongation factor Tu
Probab=83.94  E-value=3.2  Score=20.83  Aligned_cols=119  Identities=15%  Similarity=0.102  Sum_probs=59.2

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf             98358987479999999999840486120138873806899999855787311443001451034788999850235078
Q gi|254780487|r    7 IVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDPA   86 (217)
Q Consensus         7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   86 (217)
                      ++--|-|.|||+.+-.|...+...+-+-.             ......+                .....+..+.+++..
T Consensus        16 ~~~GHVD~GKSTL~g~L~~~~~~~~~~~~-------------~~~~~~D----------------~~~eEr~rGiTid~~   66 (409)
T CHL00071         16 GTIGHVDHGKTTLTAAITMTLAANGGAKG-------------KKYDEID----------------SAPEEKARGITINTA   66 (409)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHCCCHHH-------------HHHHHCC----------------CCHHHHHCCCEEEEC
T ss_conf             99954588399999998645300451334-------------3155323----------------797687369448802


Q ss_pred             HHHH-HHHCCEEEEECCCC-CCCC-CCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             8642-23288799922765-5566-76753089999974794489705776504579999999984799079999769
Q gi|254780487|r   87 TINP-PDINDSIIIEGIGG-LLVP-LTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG  161 (217)
Q Consensus        87 ~~~~-~~~~D~viIEGagg-~~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~  161 (217)
                      +... .....+.+|.-+|. -|.+ ...+.+.+|       -++||+++..|-..+|.--+..++..|++..-|.+|+
T Consensus        67 ~~~~et~~~~~~~iD~PGH~~fv~nmi~Gas~aD-------~alLVV~A~~G~~~QTkEHl~l~~~lgV~~~IVavnK  137 (409)
T CHL00071         67 HVEYETENRHYAHVDCPGHADYVKNMITGAAQMD-------GAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNK  137 (409)
T ss_pred             EEEEECCCEEEEEEECCCHHHHHHHHHHHHCCCC-------CEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             4899628759999867967899999875230158-------1289998687885004999999997399936555556


No 341
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=83.93  E-value=3.2  Score=20.83  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             299983589874799999999998
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      .+.|.|-.|++|||++++-++..+
T Consensus        20 ~l~vi~g~pg~GKS~~~~~~a~~~   43 (186)
T pfam03796        20 DLIIIAARPSMGKTAFALNIARNA   43 (186)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             179999679998799999999999


No 342
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=83.85  E-value=1.2  Score=23.41  Aligned_cols=29  Identities=45%  Similarity=0.639  Sum_probs=22.5

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             299983589874799999999998404861201
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ   36 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~   36 (217)
                      -+.|+|- ||+|||++-=+++.||   |-||+-
T Consensus        32 ~f~i~G~-tGAGKtsLldAI~yAL---YGkP~~   60 (1063)
T TIGR00618        32 LFVICGK-TGAGKTSLLDAITYAL---YGKPVP   60 (1063)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHH---CCCCCC
T ss_conf             3677788-9983545999999987---288877


No 343
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=83.71  E-value=0.62  Score=25.25  Aligned_cols=33  Identities=33%  Similarity=0.298  Sum_probs=25.4

Q ss_pred             CEEEEEC---CCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             3299983---58987479999999999840486120
Q gi|254780487|r    3 LRLVIVG---TDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         3 ~~i~I~G---T~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      |-|+||+   |--|-|||++|.||.++|+.-+.|.+
T Consensus        39 klilVTaitPTP~GEGKTTttIGL~~aL~~~gk~~~   74 (524)
T cd00477          39 KLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAI   74 (524)
T ss_pred             EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf             599998468888888853109989999987366314


No 344
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=83.60  E-value=1.4  Score=23.01  Aligned_cols=27  Identities=33%  Similarity=0.410  Sum_probs=22.7

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             8329998358987479999999999840
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      ..+++.+|+. |+|||+++..|+++++.
T Consensus        38 ~HAyLFsGpr-G~GKTt~ArilAk~LnC   64 (560)
T PRK06647         38 ANAYIFSGPR-GVGKTSSARAFARCLNC   64 (560)
T ss_pred             CCEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf             7436632899-87899999999999659


No 345
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=83.58  E-value=3.3  Score=20.74  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=27.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf             299983589874799999999998404861201388
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM   39 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~   39 (217)
                      +||. |-.+|||||+--+.=++.++..|..-| .|.
T Consensus         7 kIyl-G~apGVGKTy~ML~eA~~l~~~G~DVV-iG~   40 (211)
T pfam02702         7 KIFL-GAAPGVGKTYAMLSEAHELLERGVDVV-IGY   40 (211)
T ss_pred             EEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEE-EEE
T ss_conf             8985-359987789999999999997899569-999


No 346
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=83.45  E-value=1.6  Score=22.69  Aligned_cols=30  Identities=40%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH-HCCCCCC
Q ss_conf             3299983589874799999999998-4048612
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHAL-NAYYWKP   34 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l-~~~~~KP   34 (217)
                      +.+++.+|||  |||.++.+|+..| +.+.+|=
T Consensus       438 raLl~MATGT--GKTrtaial~~rLlk~~~~kR  468 (1126)
T PRK11448        438 EILLAMATGT--GKTRTAIALMYRLLKAKRFKR  468 (1126)
T ss_pred             CEEEEECCCC--CHHHHHHHHHHHHHHCCCCCE
T ss_conf             4688724888--589899999999996587672


No 347
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=83.44  E-value=3.3  Score=20.70  Aligned_cols=113  Identities=16%  Similarity=0.183  Sum_probs=53.7

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf             98358987479999999999840486120138873806899999855787311443001451034788999850235078
Q gi|254780487|r    7 IVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDPA   86 (217)
Q Consensus         7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   86 (217)
                      |.|- -|.|||++-...-.++...||.-+..- +-..=+.-+..-++...       .        -+++........  
T Consensus       402 VvG~-AGaGKStmL~aAReawEa~GyrV~GaA-LsGkAAegLe~~sGI~S-------r--------TlAs~e~~w~~g--  462 (1102)
T PRK13826        402 VIGR-AGAGKTTMMKAAREAWEAAGYRVVGGA-LAGKAAEGLEKEAGIAS-------R--------TLSSWELRWNQG--  462 (1102)
T ss_pred             EEEC-CCCCHHHHHHHHHHHHHHCCCEEEEEC-CCHHHHHHHHHCCCCCC-------H--------HHHHHHHHHCCC--
T ss_conf             9842-888788999999999997797798015-00789997753469530-------3--------389999874358--


Q ss_pred             HHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC-CCCHHHHHH
Q ss_conf             8642232887999227655566767530899999747944897057-765045799
Q gi|254780487|r   87 TINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART-SLGTINHSL  141 (217)
Q Consensus        87 ~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~-~~g~i~~~~  141 (217)
                      .. .-...|+++|.-+|=  ++.-.-.-..+.+..-|++||||++. .++.|..--
T Consensus       463 r~-~L~~~dVlVIDEAGM--Vgsrqmarvl~~ae~aGAKvVLVGD~~QLQpIeAGa  515 (1102)
T PRK13826        463 RD-QLDNKTVFVLDEAGM--VSSRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAGA  515 (1102)
T ss_pred             CC-CCCCCCEEEEECCCC--CCHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCH
T ss_conf             65-567873899845556--557999999999997599899968878827610468


No 348
>COG3944 Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=83.43  E-value=0.91  Score=24.22  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=19.7

Q ss_pred             CHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             059999986199899994788888
Q gi|254780487|r  166 KVEETIVKIGRIPHLGRLPKIDPI  189 (217)
Q Consensus       166 ~~~~~le~~~~ipvLG~iP~~~~~  189 (217)
                      ..+|.+|+.++.|+||+||.+.+.
T Consensus       202 Ks~edie~~l~lPvLG~Ip~~~~~  225 (226)
T COG3944         202 KSEEDIEEVLDLPVLGVIPNFEKE  225 (226)
T ss_pred             CCHHHHHHHHCCCEEECCCCCCCC
T ss_conf             799999986099623024664446


No 349
>KOG1384 consensus
Probab=83.39  E-value=1.3  Score=23.15  Aligned_cols=25  Identities=32%  Similarity=0.444  Sum_probs=21.5

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             32999835898747999999999984
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      |-++|.|| ||+||+-++.-|+.-|+
T Consensus         8 KVvvI~G~-TGsGKSrLaVdLA~rf~   32 (348)
T KOG1384           8 KVVVIMGA-TGAGKSRLAVDLATRFP   32 (348)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHCC
T ss_conf             59999557-77770466788897578


No 350
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=83.37  E-value=0.67  Score=25.05  Aligned_cols=33  Identities=27%  Similarity=0.262  Sum_probs=25.3

Q ss_pred             CEEEEEC---CCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             3299983---58987479999999999840486120
Q gi|254780487|r    3 LRLVIVG---TDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         3 ~~i~I~G---T~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      |-|+||+   |--|-|||++|.||.++|+.-+.|.+
T Consensus        55 klIlVTaitPTP~GEGKTTttIGL~~aL~~lgk~~~   90 (556)
T PRK13505         55 KLILVTAINPTPAGEGKTTVTVGLGDALNKIGKKTV   90 (556)
T ss_pred             EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf             399998458888888863017989999987187437


No 351
>PRK13946 shikimate kinase; Provisional
Probab=83.32  E-value=1.4  Score=23.11  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=24.9

Q ss_pred             CC-CEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             98-329998358987479999999999840486
Q gi|254780487|r    1 MK-LRLVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         1 M~-~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      |. |.||..|- +|+|||+|.-.|++.|...++
T Consensus        18 l~kknIvLIG~-mGsGKStvGk~LA~~L~~~fi   49 (195)
T PRK13946         18 LGKRTVVLVGL-MGAGKSTVGRRLATMLGLPFL   49 (195)
T ss_pred             HCCCCEEEECC-CCCCHHHHHHHHHHHHCCCEE
T ss_conf             58995899899-999889999999999797989


No 352
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=83.30  E-value=1.4  Score=23.08  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             299983589874799999999998
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      -|.|+|- ||+|||++-=++|-||
T Consensus        32 LFlI~G~-TGAGKSTIlDAItfAL   54 (1047)
T PRK10246         32 LFAITGP-TGAGKTTLLDAICLAL   54 (1047)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHH
T ss_conf             7888899-9998899999999995


No 353
>PRK05595 replicative DNA helicase; Provisional
Probab=83.27  E-value=3.4  Score=20.66  Aligned_cols=22  Identities=27%  Similarity=0.579  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHH
Q ss_conf             2999835898747999999999
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVH   25 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~   25 (217)
                      -++|.|..+++|||+.++.+++
T Consensus       202 dLiiiaaRP~mGKTa~alnia~  223 (444)
T PRK05595        202 DMILIAARPSMGKTTFALNIAE  223 (444)
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
T ss_conf             7799985798980799999999


No 354
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=83.24  E-value=1.4  Score=23.03  Aligned_cols=25  Identities=36%  Similarity=0.462  Sum_probs=21.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             29998358987479999999999840
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      .+++.|. +|+|||+++..|++.+-.
T Consensus        39 hlLf~Gp-pG~GKTt~a~~la~~l~~   63 (318)
T PRK00440         39 HLLFAGP-PGTGKTTAALALARELYG   63 (318)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf             6988895-998899999999999769


No 355
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=83.21  E-value=1.4  Score=23.02  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=22.8

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             3299983589874799999999998404
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAY   30 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~   30 (217)
                      ..++.+|+. |+|||+++..|+++++..
T Consensus        40 HAyLF~Gpr-GtGKTT~ArilAkaLnC~   66 (462)
T PRK06305         40 HAYLFSGIR-GTGKTTLARIFAKALNCQ   66 (462)
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHCCC
T ss_conf             234303899-859999999999996799


No 356
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=83.16  E-value=1  Score=23.88  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=19.9

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             999835898747999999999984
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      +|+||- ||+|||+.-=.||.+++
T Consensus        31 ~FLtG~-SGAGKttLLKLl~~~~~   53 (215)
T TIGR02673        31 LFLTGP-SGAGKTTLLKLLYGALT   53 (215)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHCC
T ss_conf             788727-78617899999985269


No 357
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=83.06  E-value=3.4  Score=20.61  Aligned_cols=117  Identities=18%  Similarity=0.228  Sum_probs=54.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC-------CCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHH
Q ss_conf             3299983589874799999999998404861201388-------73806899999855-787311443001451034788
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM-------YEETDSKTIHRIGR-IPKSHIIPEKWKLRTPASPHL   74 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~-------~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   74 (217)
                      +.+-|.|. ||+|||++.-.|++.+      |. +|.       ..+-|...+++... ..+     .|+.|.......+
T Consensus       377 e~vaIVG~-SGsGKSTl~~LL~g~~------p~-~G~I~i~g~di~~i~~~~lr~~i~~V~Q-----~~~LF~~TI~eNI  443 (588)
T PRK11174        377 QRVALVGP-SGAGKTSLLNALLGFL------PY-QGSLKINGIELRELDPESWRKHLSWVGQ-----NPQLFHGTLRDNV  443 (588)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHC------CC-CCEEEECCEECCCCCHHHHHHHEEEECC-----CCCCCCCCHHHHH
T ss_conf             78999899-9864999999998728------98-8389999986030899999966035166-----6777766299865


Q ss_pred             ------------HHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH--CCCEEEEECCCCC
Q ss_conf             ------------999850235078864223288799922765556676753089999974--7944897057765
Q gi|254780487|r   75 ------------AAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERW--QFPIILCARTSLG  135 (217)
Q Consensus        75 ------------~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l--~~~vILV~~~~~g  135 (217)
                                  ....+....+.-...+++++|-.+=|+...+-.   ...=-.-+||.+  ++|+++.-.+-..
T Consensus       444 ~~g~~~atdeei~~A~~~a~~~~~I~~Lp~GldT~vge~G~~LSG---GQrQRiaiARAll~~~~ILILDEaTSa  515 (588)
T PRK11174        444 LLANPDASDEQLQQALENAWVSEFVPLLPQGLDTPIGDQAAGLSV---GQAQRLALARALLQPCQLLLLDEPTAS  515 (588)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCH---HHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             335854334579999998624789984513223632288887799---999999999998379898999898779


No 358
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=82.96  E-value=3.5  Score=20.58  Aligned_cols=47  Identities=23%  Similarity=0.285  Sum_probs=32.2

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCH-HHHHHHHH
Q ss_conf             9998358987479999999999840486120138873806-89999985
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETD-SKTIHRIG   52 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D-~~~~~~~~   52 (217)
                      |-|-|.+ |+|||+.+-.|.+.|+..+.+.+.+..|.+.. ...++...
T Consensus         3 IviEG~d-GsGKsT~~~~L~~~L~~~g~~v~~~~eP~~~~~~~~ir~~l   50 (200)
T cd01672           3 IVFEGID-GAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELL   50 (200)
T ss_pred             EEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf             9998998-99999999999999997799389986999984678999987


No 359
>PRK07024 short chain dehydrogenase; Provisional
Probab=82.94  E-value=0.49  Score=25.92  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=25.8

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             98329998358987479999999999840486120138
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG   38 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G   38 (217)
                      |+|+++|||.++|+|+     .+++.|-..|++-+.++
T Consensus         1 M~~~VlITGassGIG~-----a~A~~la~~G~~v~l~~   33 (256)
T PRK07024          1 MPLKVFITGASSGIGQ-----ALAREYARQGATLGLVA   33 (256)
T ss_pred             CCCEEEEECCCHHHHH-----HHHHHHHHCCCEEEEEE
T ss_conf             9998999846029999-----99999998899899998


No 360
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222   This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=82.89  E-value=0.47  Score=26.00  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=16.8

Q ss_pred             EEEEECCCCCCCHHH----HHHHHHHHH
Q ss_conf             299983589874799----999999998
Q gi|254780487|r    4 RLVIVGTDTSVGKTI----FASALVHAL   27 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~----vs~~L~~~l   27 (217)
                      -+.||| .|||||||    ||+-|-++.
T Consensus        86 VviiAG-ETGSGKTTQLPKICLELGrG~  112 (1320)
T TIGR01967        86 VVIIAG-ETGSGKTTQLPKICLELGRGS  112 (1320)
T ss_pred             EEEEEC-CCCCCCCCCCHHHHHHHCCCC
T ss_conf             899972-448762023216777542787


No 361
>pfam01268 FTHFS Formate--tetrahydrofolate ligase.
Probab=82.82  E-value=0.6  Score=25.35  Aligned_cols=33  Identities=30%  Similarity=0.255  Sum_probs=25.3

Q ss_pred             CEEEEEC---CCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             3299983---58987479999999999840486120
Q gi|254780487|r    3 LRLVIVG---TDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         3 ~~i~I~G---T~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      |-|+||+   |--|-|||++|.||.++|+.-+.|.+
T Consensus        55 klilVTaitPTP~GEGKTTttIGL~~aL~~lgk~~~   90 (555)
T pfam01268        55 KLILVTAITPTPAGEGKTTTTIGLGQALNRLGKKAI   90 (555)
T ss_pred             EEEEEEECCCCCCCCCCCEEHHHHHHHHHHHCCCEE
T ss_conf             399998457888888863023659999986287436


No 362
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=82.71  E-value=1.7  Score=22.54  Aligned_cols=35  Identities=29%  Similarity=0.431  Sum_probs=26.7

Q ss_pred             CC-CEEEEECCCCCCCHHHHHHHHHHHHHC-CCCCCEE
Q ss_conf             98-329998358987479999999999840-4861201
Q gi|254780487|r    1 MK-LRLVIVGTDTSVGKTIFASALVHALNA-YYWKPIQ   36 (217)
Q Consensus         1 M~-~~i~I~GT~t~vGKT~vs~~L~~~l~~-~~~KPv~   36 (217)
                      |+ +.++++|- +|.|||.++.|+++.|-. ..|-|+.
T Consensus        48 ~aGraiLlaGp-pGTGKTAlA~aiakeLG~~vPF~~i~   84 (395)
T pfam06068        48 IAGRAVLIAGP-PGTGKTALAIAISKELGEDTPFCPIS   84 (395)
T ss_pred             CCCCEEEEECC-CCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             57738998779-99888999999999748799734500


No 363
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=82.48  E-value=3.6  Score=20.47  Aligned_cols=105  Identities=17%  Similarity=0.180  Sum_probs=47.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCC---CCCCCCCCCHHHHHHHHHH-
Q ss_conf             299983589874799999999998404861201388738068999998557873114---4300145103478899985-
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHII---PEKWKLRTPASPHLAAEID-   79 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-   79 (217)
                      .++|.|. .|.|||+.+.-++.+.-..+.|-.--- .+.+-..++.+.....-+...   -..+.+. +..|......+ 
T Consensus        26 ~~li~G~-~GtGKsi~~~~~~~~~l~~g~~~~yis-~e~t~~~~i~qm~s~g~di~~~~~~G~l~~i-~~~~~~~~~~~~  102 (230)
T PRK08533         26 IILIEGD-ESTGKSILSQRLAYGFLQNGYSVSYVS-SQLTTTEFIKQMMSLGYDINKKLISGKLLYI-PVYPLLSGNSEK  102 (230)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEE-ECCCHHHHHHHHHHCCCCCHHHHHCCCEEEE-ECCCCCCCHHHH
T ss_conf             8999868-998789999999999987898699999-4389999999999869981799757967999-613433540457


Q ss_pred             HCCCHHH-HHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf             0235078-8642232887999227655566767
Q gi|254780487|r   80 GVIIDPA-TINPPDINDSIIIEGIGGLLVPLTT  111 (217)
Q Consensus        80 ~~~i~~~-~~~~~~~~D~viIEGagg~~~~~~~  111 (217)
                      ...+... ......++|+++|.....+......
T Consensus       103 ~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~  135 (230)
T PRK08533        103 RDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDAS  135 (230)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCC
T ss_conf             899999973266437989999053188516777


No 364
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=82.47  E-value=1.9  Score=22.16  Aligned_cols=50  Identities=22%  Similarity=0.213  Sum_probs=29.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             987479999999999840486120138873806899999855787311443001
Q gi|254780487|r   12 TSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWK   65 (217)
Q Consensus        12 t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~   65 (217)
                      +|+|||+|...|++.|...|.    -|..-.+.+...+...+.+.+..+.-||.
T Consensus         4 sG~GKStvg~~lA~~lg~~fi----dGDdlHp~aNi~KM~~GiPL~DdDR~pWL   53 (161)
T COG3265           4 SGSGKSTVGSALAERLGAKFI----DGDDLHPPANIEKMSAGIPLNDDDRWPWL   53 (161)
T ss_pred             CCCCHHHHHHHHHHHCCCCEE----CCCCCCCHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             765777999999998098233----35656998899987279989841124799


No 365
>PRK12377 putative replication protein; Provisional
Probab=82.41  E-value=3.6  Score=20.45  Aligned_cols=103  Identities=15%  Similarity=0.120  Sum_probs=49.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             89874799999999998404861201388738068999998557873114430014510347889998502350788642
Q gi|254780487|r   11 DTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDPATINP   90 (217)
Q Consensus        11 ~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   90 (217)
                      .+|+|||..+++|++.+-..|++-.-.   .-  +.++..+..                      +..++. ....+.+.
T Consensus       109 ~pGtGKTHLA~AIg~~a~~~G~sVlF~---t~--~dLv~~L~~----------------------a~~~g~-~~~k~l~~  160 (248)
T PRK12377        109 KPGTGKNHLAAAIGNRLLAKGRSVIVV---TV--PDVMSRLHE----------------------SYDNGQ-SGEKFLQE  160 (248)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEE---EH--HHHHHHHHH----------------------HHHCCC-CHHHHHHH
T ss_conf             999878899999999999879969998---89--999999999----------------------998485-09999999


Q ss_pred             HHHCCEEEEECCCCCCCCCCCCCCHHHHHH-H-HC-CCEEEEECCCCCHHHHHH
Q ss_conf             232887999227655566767530899999-7-47-944897057765045799
Q gi|254780487|r   91 PDINDSIIIEGIGGLLVPLTTEYLFIDLIE-R-WQ-FPIILCARTSLGTINHSL  141 (217)
Q Consensus        91 ~~~~D~viIEGagg~~~~~~~~~~~~dla~-~-l~-~~vILV~~~~~g~i~~~~  141 (217)
                      -...|++||+-.|-...........-++.. . -. -|+|+.++-.-+.....+
T Consensus       161 l~~~dLLIIDElG~~~~s~~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~il  214 (248)
T PRK12377        161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLL  214 (248)
T ss_pred             HHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
T ss_conf             733898986000578898679999999999998557986897589977998887


No 366
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.37  E-value=1.6  Score=22.63  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=27.5

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC
Q ss_conf             9832999835898747999999999984048612013
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS   37 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~   37 (217)
                      |.|-|+.-|. ||||||-++--|++..+.-|.|-=+|
T Consensus        49 ~PKNILMIGp-TGVGKTEIARRLAkl~~aPFiKVEAT   84 (444)
T COG1220          49 TPKNILMIGP-TGVGKTEIARRLAKLAGAPFIKVEAT   84 (444)
T ss_pred             CCCCEEEECC-CCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             7553588888-88768899999999848983788764


No 367
>PRK13975 thymidylate kinase; Provisional
Probab=82.33  E-value=1.6  Score=22.64  Aligned_cols=30  Identities=40%  Similarity=0.478  Sum_probs=25.9

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             9832999835898747999999999984048
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      |.|=|-+=|.+ |+|||+.+-.|...|++.+
T Consensus         1 m~kfI~fEGiD-GsGKsTq~~lL~~~L~~~~   30 (198)
T PRK13975          1 MNKFIVFEGID-GSGKTTQAKLLAEKLNAKF   30 (198)
T ss_pred             CCCEEEEECCC-CCCHHHHHHHHHHHCCCCE
T ss_conf             99889998998-8869999999999738748


No 368
>TIGR01069 mutS2 MutS2 family protein; InterPro: IPR005747   Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication . MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base . MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch . MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level . Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA.    MutS is a modular protein with a complex structure , and is composed of:    N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts.    Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions . Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts .    This entry represents a family of MutS proteins.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0045005 maintenance of fidelity during DNA-dependent DNA replication.
Probab=82.32  E-value=1.9  Score=22.26  Aligned_cols=29  Identities=28%  Similarity=0.338  Sum_probs=23.8

Q ss_pred             CEEEEECCCCCCCHHHH--HHHHHHHHHCCCC
Q ss_conf             32999835898747999--9999999840486
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIF--ASALVHALNAYYW   32 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~v--s~~L~~~l~~~~~   32 (217)
                      +.+.|||-+|| |||.+  |+||+..+-..+.
T Consensus       342 ~~~~iTGPNtG-GKTVtLKTLGL~~lm~q~gi  372 (834)
T TIGR01069       342 RVLIITGPNTG-GKTVTLKTLGLLALMAQSGI  372 (834)
T ss_pred             CEEEEECCCCC-HHHHHHHHHHHHHHHHHCCC
T ss_conf             17888677996-17899999999999987278


No 369
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=82.29  E-value=0.73  Score=24.84  Aligned_cols=33  Identities=21%  Similarity=0.078  Sum_probs=25.4

Q ss_pred             CEEEEEC---CCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             3299983---58987479999999999840486120
Q gi|254780487|r    3 LRLVIVG---TDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         3 ~~i~I~G---T~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      |-|+||+   |--|-|||++|.||.++|+.-+.|.+
T Consensus        64 klILVTaitPTP~GEGKTTttIGL~~aL~~lgkk~~   99 (587)
T PRK13507         64 KYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVG   99 (587)
T ss_pred             EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf             399998468888889862105629999986088258


No 370
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=82.15  E-value=1.9  Score=22.25  Aligned_cols=36  Identities=31%  Similarity=0.463  Sum_probs=26.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf             29998358987479999999999840486120138873
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYE   41 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~   41 (217)
                      -+.-.|- +|||||++.-.+++++.+.|++ ++-|.-+
T Consensus       352 ILcLVGP-PGVGKTSLgkSIA~al~RkfvR-~sLGGvr  387 (782)
T COG0466         352 ILCLVGP-PGVGKTSLGKSIAKALGRKFVR-ISLGGVR  387 (782)
T ss_pred             EEEEECC-CCCCCHHHHHHHHHHHCCCEEE-EECCCCC
T ss_conf             7999789-9887011899999995897799-9547654


No 371
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=81.87  E-value=1.4  Score=23.00  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=22.8

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             832999835898747999999999984
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      .+++-|.|- ||+||||...-|.+.+.
T Consensus       387 G~r~Ai~G~-SG~GKsTLL~~L~G~l~  412 (566)
T TIGR02868       387 GERVAILGP-SGSGKSTLLATLAGLLD  412 (566)
T ss_pred             CCCEEEECC-CCCCHHHHHHHHHHHCC
T ss_conf             860898668-87657899999984028


No 372
>pfam04227 Indigoidine_A Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown.
Probab=81.83  E-value=3.8  Score=20.32  Aligned_cols=110  Identities=19%  Similarity=0.213  Sum_probs=66.4

Q ss_pred             CEEEEECCCCCCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC----------
Q ss_conf             87999227655566767-5308999997479448970577650457999999998479907999976977----------
Q gi|254780487|r   95 DSIIIEGIGGLLVPLTT-EYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDS----------  163 (217)
Q Consensus        95 D~viIEGagg~~~~~~~-~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~----------  163 (217)
                      .+-.=-|.||+..+... ..-.+|+...-+.||++|+.. .-+|=+.-.|+|+++..|+++.|+==+..+          
T Consensus       112 ~VFaTGGIGGVHrg~~~t~DiSaDL~eL~~tpv~VVcaG-~KsILDi~~TlE~LET~GV~V~gy~td~fPaFy~~~Sg~~  190 (293)
T pfam04227       112 KVFATGGIGGVHRGAEESFDISADLTELARTPVAVVCAG-AKSILDIPKTLEYLETQGVPVIGYGTDEFPAFYSRDSGFK  190 (293)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEECC-CHHHHCCHHHHHHHHHCCCEEEEECCCCCCCEEECCCCCC
T ss_conf             089746745125786456321434788815975999426-0765054468999997594389745876564230588998


Q ss_pred             CC---CHHH----HHH--HHCCCC--EEEE--ECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             80---0599----999--861998--9999--47888888879999999713399
Q gi|254780487|r  164 MP---KVEE----TIV--KIGRIP--HLGR--LPKIDPIDPDVLHQKFQEHFTQS  205 (217)
Q Consensus       164 ~~---~~~~----~le--~~~~ip--vLG~--iP~~~~~~~~~l~~~~~~~~~~~  205 (217)
                      .+   +..+    .+.  ...+.|  +|=+  ||....++.+.+..++++.+.+.
T Consensus       191 ~~~~~~~~~eiA~i~~~~~~lgl~~g~LianPIP~e~~i~~~~ie~~I~~Al~ea  245 (293)
T pfam04227       191 VPYRLDSAEEIAAIIRARWALGLQGGVLVANPIPEEYAIDREEIEAAIEQALAEA  245 (293)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf             8661389999999999999718998359966897254499899999999999999


No 373
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=81.76  E-value=3.8  Score=20.30  Aligned_cols=113  Identities=14%  Similarity=0.085  Sum_probs=55.5

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf             98358987479999999999840486120138873806899999855787311443001451034788999850235078
Q gi|254780487|r    7 IVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDPA   86 (217)
Q Consensus         7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   86 (217)
                      |.|- -|.|||++-.+--.++...||.-+..- +-..=+.-+..-++...       .+   -.| ... .+++     .
T Consensus       367 VvG~-AGtGKStmL~aAReawEa~GyrV~GaA-LsGkAAegLe~~sGI~S-------rT---lAs-~e~-~w~~-----g  427 (992)
T PRK13889        367 VVGY-AGTGKSAMLGVAREAWEAAGYEVRGAA-LSGIAAENLEGGSGIAS-------RT---IAS-LEH-GWGQ-----G  427 (992)
T ss_pred             EEEC-CCCCHHHHHHHHHHHHHHCCCEEEEEC-CCHHHHHHHHHCCCCCC-------HH---HHH-HHH-HHHC-----C
T ss_conf             9833-888788999999999997798898115-00689997653479431-------67---999-999-8746-----7


Q ss_pred             HHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC-CCCHHHHHH
Q ss_conf             8642232887999227655566767530899999747944897057-765045799
Q gi|254780487|r   87 TINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART-SLGTINHSL  141 (217)
Q Consensus        87 ~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~-~~g~i~~~~  141 (217)
                      .. .-...|++||.-+|=  ++.-.-.-..+.+...++.||||++. .++.|..--
T Consensus       428 ~~-~L~~~dVlVVDEAGM--VgSRqMarll~~Ae~AGAKVVLVGD~~QLq~IeAGa  480 (992)
T PRK13889        428 RD-LLTARDVLVIDEAGM--VGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEAGA  480 (992)
T ss_pred             CC-CCCCCCEEEEECCCC--CCHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCH
T ss_conf             33-478985899967655--774999999999998499899948877718864688


No 374
>PRK06749 replicative DNA helicase; Provisional
Probab=81.64  E-value=3.9  Score=20.27  Aligned_cols=28  Identities=29%  Similarity=0.326  Sum_probs=22.5

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             2999835898747999999999984048
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      .++|.|..+++|||..++.++...-..+
T Consensus       187 ~LiviaaRPsmGKTa~alnia~~~a~~g  214 (428)
T PRK06749        187 DFVVLGARPSMGKTAFALNVGLHAAKSG  214 (428)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             6899962798976899999999999649


No 375
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=81.56  E-value=2.3  Score=21.66  Aligned_cols=28  Identities=32%  Similarity=0.348  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      .++++.|  |+|||.+++.+++.+...+-|
T Consensus        21 ~~i~~pT--GsGKT~~~~~~i~~~~~~~~~   48 (103)
T pfam04851        21 GLIVMAT--GSGKTLTAAKLIARLLKGKKK   48 (103)
T ss_pred             EEEEECC--CCCHHHHHHHHHHHHHHCCCC
T ss_conf             6999589--998799999999999846992


No 376
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374    This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=81.42  E-value=0.81  Score=24.53  Aligned_cols=14  Identities=36%  Similarity=0.665  Sum_probs=11.3

Q ss_pred             EEEECCCCCCCHHHH
Q ss_conf             999835898747999
Q gi|254780487|r    5 LVIVGTDTSVGKTIF   19 (217)
Q Consensus         5 i~I~GT~t~vGKT~v   19 (217)
                      ++|||- ||||||+.
T Consensus       329 vLVTGP-TGSGKTVS  342 (577)
T TIGR02538       329 VLVTGP-TGSGKTVS  342 (577)
T ss_pred             EEEECC-CCCCHHHH
T ss_conf             886266-59841687


No 377
>PRK13764 ATPase; Provisional
Probab=81.28  E-value=2.4  Score=21.53  Aligned_cols=28  Identities=29%  Similarity=0.392  Sum_probs=23.5

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             32999835898747999999999984048
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      ..|+|+|. +|+|||+.+.+|+..+...+
T Consensus       260 ~GilIaG~-PGaGKsTfaqalA~~~~~~g  287 (605)
T PRK13764        260 EGILIAGA-PGAGKSTFAQALAEFYADMG  287 (605)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHHHCC
T ss_conf             64999779-99977899999999998479


No 378
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381   Members of this family function in ethanolamine  and propanediol  degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively.  The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems.  Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=81.23  E-value=0.96  Score=24.07  Aligned_cols=117  Identities=14%  Similarity=0.083  Sum_probs=54.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             32999835898747999999999984048612013887380689999985578731144300145103478899985023
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI   82 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (217)
                      ||+++.|- |++|||+.    |++|+..+.|-=+|+.-+..           + ....-.|--|....           .
T Consensus         1 Kr~~f~G~-~gCGKTTL----~q~L~g~~~~YKKTQAvE~~-----------~-k~~IDTPGEY~enr-----------~   52 (144)
T TIGR02528         1 KRIMFIGS-VGCGKTTL----TQALQGEEIKYKKTQAVEYK-----------D-KEAIDTPGEYVENR-----------R   52 (144)
T ss_pred             CEEEEEEC-CCCCHHHH----HHHCCCCCCCEEEEEEEEEC-----------C-CCCCCCCCCCCCCC-----------C
T ss_conf             91788715-88874435----43116873210233445425-----------8-88655985001575-----------2


Q ss_pred             CHHHHHHHHHHCCE-EEEECCCCCCCCCCCCCCHHHHHHHHCC-CEE-EEECCCCCH-HHHHHHHHHHHHHCCC
Q ss_conf             50788642232887-9992276555667675308999997479-448-970577650-4579999999984799
Q gi|254780487|r   83 IDPATINPPDINDS-IIIEGIGGLLVPLTTEYLFIDLIERWQF-PII-LCARTSLGT-INHSLLSLETLRNRNI  152 (217)
Q Consensus        83 i~~~~~~~~~~~D~-viIEGagg~~~~~~~~~~~~dla~~l~~-~vI-LV~~~~~g~-i~~~~l~~~~~~~~g~  152 (217)
                      .-.++.-...+.|+ ++|-++-.-.++     .-.-++....- ||| +|+..++.- -.+.-.+-+.++..|.
T Consensus        53 ~Y~AL~vtaaDAd~i~lV~~a~~~~~~-----f~PgF~~~f~kK~~IG~vTK~DLA~~d~~i~r~~~~L~~AG~  121 (144)
T TIGR02528        53 YYSALIVTAADADVIALVQSATDEESR-----FSPGFASIFVKKEVIGIVTKIDLAEADKDIERAKRLLETAGA  121 (144)
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCCC-----CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf             378888887210236677357764223-----785000236788634788403788773479999999872365


No 379
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=81.14  E-value=2.7  Score=21.29  Aligned_cols=30  Identities=20%  Similarity=0.097  Sum_probs=23.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             3299983589874799999999998404861
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      +.+||.|- +|+|||+..-++++.++..+.+
T Consensus        39 ~~l~i~G~-~GsGKTHLl~a~~~~~~~~~~~   68 (226)
T TIGR03420        39 RFLYLWGE-SGSGKSHLLQAACAAAEERGKS   68 (226)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHHCCCCC
T ss_conf             86999899-9998899999999998626995


No 380
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=80.75  E-value=2.2  Score=21.83  Aligned_cols=27  Identities=26%  Similarity=0.233  Sum_probs=22.6

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             8329998358987479999999999840
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      +.+++.+|.. |+|||+++..+++++..
T Consensus        36 ~HAYLFsGPr-GvGKTt~ArifAkaLnC   62 (523)
T PRK08451         36 AHAYLFSGLR-GSGKTSSARIFSRALVC   62 (523)
T ss_pred             CCEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf             7158757899-86889999999999759


No 381
>PRK08506 replicative DNA helicase; Provisional
Probab=80.67  E-value=4.2  Score=20.06  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             299983589874799999999998
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      -++|.|..+++|||..++.++...
T Consensus       194 dLiIIAARPsmGKTAfAlniA~~~  217 (473)
T PRK08506        194 DLIIIAARPSMGKTTLVLNMVLKA  217 (473)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             279995079986789999999999


No 382
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP).  It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=80.63  E-value=2.2  Score=21.86  Aligned_cols=29  Identities=24%  Similarity=0.251  Sum_probs=21.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      -++|+|. ||+|||+....+++.++....+
T Consensus        82 lilitGp-tGSGKtTtl~a~l~~~~~~~~~  110 (264)
T cd01129          82 IILVTGP-TGSGKTTTLYSALSELNTPEKN  110 (264)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHCCCCCE
T ss_conf             8999789-9997799999999864368850


No 383
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=80.36  E-value=2.3  Score=21.75  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=22.8

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             8329998358987479999999999840
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      +.+++.+|. .|+|||+++..+++++..
T Consensus        38 aHAYLFsGP-rGvGKTTlArifAkaLnC   64 (613)
T PRK05896         38 THAYIFSGP-RGIGKTSIAKIFAKAINC   64 (613)
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf             622775589-984889999999999669


No 384
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=80.35  E-value=4.3  Score=20.00  Aligned_cols=21  Identities=33%  Similarity=0.616  Sum_probs=15.5

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             99983589874799999999998
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      ++| |- +|||||.+.=||++.+
T Consensus       198 iLV-Ge-pGVGKTAIvEGLA~rI  218 (852)
T TIGR03346       198 VLI-GE-PGVGKTAIVEGLAQRI  218 (852)
T ss_pred             CEE-CC-CCCCHHHHHHHHHHHH
T ss_conf             212-79-9987999999999998


No 385
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=79.96  E-value=1.9  Score=22.23  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=19.3

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             983299983589874799999999
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALV   24 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~   24 (217)
                      |.+.|-|||. .++|||+++--|-
T Consensus         1 ~m~~IgiTG~-igsGKStv~~~l~   23 (199)
T PRK00081          1 MMLIIGLTGG-IGSGKSTVANIFA   23 (199)
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHH
T ss_conf             9789995788-8777999999999


No 386
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=79.96  E-value=2.3  Score=21.74  Aligned_cols=110  Identities=15%  Similarity=0.156  Sum_probs=49.9

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCC-----CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             9832999835898747999999999984048-----61201388738068999998557873114430014510347889
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYY-----WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLA   75 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~-----~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (217)
                      |++-+||+|+ +++|||.--+--++-++.++     |||---   .--....+....+...+...+.     ...  ...
T Consensus         3 ~g~l~~i~gp-M~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD---~R~~~~~V~Sr~G~~~~A~~i~-----~~~--~i~   71 (201)
T COG1435           3 MGWLEFIYGP-MFSGKTEELLRRARRYKEAGMKVLVFKPAID---TRYGVGKVSSRIGLSSEAVVIP-----SDT--DIF   71 (201)
T ss_pred             EEEEEEEECC-CCCCCHHHHHHHHHHHHHCCCEEEEEECCCC---CCCCCCEEEECCCCCCCCEECC-----CHH--HHH
T ss_conf             4789999715-7686359999999999975980899852533---5356433653158766535638-----757--899


Q ss_pred             HHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
Q ss_conf             9985023507886422328879992276555667675308999997479448970
Q gi|254780487|r   76 AEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCA  130 (217)
Q Consensus        76 ~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~  130 (217)
                      ..+.       ........|+++|.-+--+-.  ..-....+++..||.|||+-+
T Consensus        72 ~~i~-------~~~~~~~~~~v~IDEaQF~~~--~~v~~l~~lad~lgi~Vi~~G  117 (201)
T COG1435          72 DEIA-------ALHEKPPVDCVLIDEAQFFDE--ELVYVLNELADRLGIPVICYG  117 (201)
T ss_pred             HHHH-------HCCCCCCCCEEEEEHHHHCCH--HHHHHHHHHHHHCCCEEEEEC
T ss_conf             9998-------513478757899961671897--899999999861498899954


No 387
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=79.71  E-value=2.6  Score=21.38  Aligned_cols=27  Identities=22%  Similarity=0.361  Sum_probs=22.8

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             3299983589874799999999998404
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAY   30 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~   30 (217)
                      ..+||.|. +|.|||.++--+++.++..
T Consensus        56 ~n~~I~G~-pGTGKT~~vk~v~~~l~~~   82 (394)
T PRK00411         56 SNVLILGP-PGTGKTTTVKKVFEELEEA   82 (394)
T ss_pred             CCEEEECC-CCCCHHHHHHHHHHHHHHH
T ss_conf             84799889-9998999999999999974


No 388
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=79.68  E-value=2.2  Score=21.85  Aligned_cols=26  Identities=35%  Similarity=0.438  Sum_probs=21.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             299983589874799999999998404
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAY   30 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~   30 (217)
                      .++..|. .|+|||+++..+++.+...
T Consensus        38 hlLf~GP-pG~GKTt~A~~lA~~l~~~   63 (337)
T PRK12402         38 HLVVYGP-SGSGKTAAVRALARELYGD   63 (337)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHCCC
T ss_conf             6988892-9848999999999996799


No 389
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=79.50  E-value=2.5  Score=21.50  Aligned_cols=28  Identities=29%  Similarity=0.390  Sum_probs=24.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             32999835898747999999999984048
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      ..|+|+|. +|.|||+.+.+|+.-+...|
T Consensus       264 eGILIAG~-PGaGKsTFaqAlAefy~~~G  291 (604)
T COG1855         264 EGILIAGA-PGAGKSTFAQALAEFYASQG  291 (604)
T ss_pred             CCEEEECC-CCCCHHHHHHHHHHHHHHCC
T ss_conf             64699569-99974689999999998669


No 390
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491   This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome.    ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=79.44  E-value=2.2  Score=21.87  Aligned_cols=32  Identities=34%  Similarity=0.462  Sum_probs=25.4

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             983299983589874799999999998404861
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      |.|=|+.-|. ||||||=++-=|++..+.=|.|
T Consensus        46 ~PKNILMiGp-TGVGKTEIARRlAKL~~aPFiK   77 (463)
T TIGR00390        46 TPKNILMIGP-TGVGKTEIARRLAKLANAPFIK   77 (463)
T ss_pred             CCCCEEEECC-CCCCHHHHHHHHHHHHCCCCEE
T ss_conf             8743043278-8985447999999984489146


No 391
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=79.43  E-value=4.6  Score=19.81  Aligned_cols=45  Identities=16%  Similarity=0.175  Sum_probs=36.3

Q ss_pred             HHHHHHCCEEEEECCCCCCCCCCCCCC---HHHHHHHHCCCEEEEECC
Q ss_conf             642232887999227655566767530---899999747944897057
Q gi|254780487|r   88 INPPDINDSIIIEGIGGLLVPLTTEYL---FIDLIERWQFPIILCART  132 (217)
Q Consensus        88 ~~~~~~~D~viIEGagg~~~~~~~~~~---~~dla~~l~~~vILV~~~  132 (217)
                      ..++.+..++|+.-..|-.+|+.....   ..++-+.++.-+|+|+..
T Consensus       148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD  195 (309)
T COG1125         148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD  195 (309)
T ss_pred             HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf             997419886863488554476549999999999999859879999357


No 392
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=79.32  E-value=4.6  Score=19.79  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=23.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCC--CC-CEEC
Q ss_conf             2999835898747999999999984048--61-2013
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYY--WK-PIQS   37 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~--~K-Pv~~   37 (217)
                      -++.+|. +|+|||++.-.|++-+....  ++ |+..
T Consensus        47 iLlLtGP-aG~GKTTTI~lLAkeLG~ei~EW~NP~~~   82 (490)
T pfam03215        47 ILLLTGP-SGCGKSTTVKVLSKELGIEIIEWSNPEYL   82 (490)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHCCEEEEECCCCCC
T ss_conf             8998798-99889999999999759689981486545


No 393
>TIGR00150 TIGR00150 conserved hypothetical protein TIGR00150; InterPro: IPR003442   This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements . .
Probab=79.20  E-value=1.9  Score=22.18  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=22.5

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             3299983589874799999999998404
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAY   30 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~   30 (217)
                      +.++..-=+-|+|||+.+-|++++|--.
T Consensus        28 ~~v~~L~GDlGaGKTtl~~G~~~~LG~~   55 (147)
T TIGR00150        28 GTVVLLKGDLGAGKTTLVKGLLQGLGIT   55 (147)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCCE
T ss_conf             5389973234666589999999837922


No 394
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=79.09  E-value=2.8  Score=21.14  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=19.7

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             999835898747999999999984
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      ++|+|+ ||+|||+.+-.|++.+.
T Consensus       477 ~~I~g~-SGsGKSf~~q~l~~~~~  499 (864)
T PRK13721        477 MAVCGT-SGAGKTGLIQPLIRSVL  499 (864)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHH
T ss_conf             699828-99868999999999998


No 395
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily.  BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants.  BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well.  The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli.  It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes.  It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes.  In addition, BipA from enteropathogenic E. co
Probab=78.90  E-value=4.8  Score=19.71  Aligned_cols=64  Identities=11%  Similarity=0.035  Sum_probs=38.3

Q ss_pred             HCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             2887999227655566767530899999747944897057765045799999999847990799997697
Q gi|254780487|r   93 INDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGD  162 (217)
Q Consensus        93 ~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~  162 (217)
                      ++-+.+|...|..-    +......-++..+ -+|||+++..|--.+|.-.+..++..|+++. +.+|+.
T Consensus        64 ~~~~n~IDtPGH~d----F~~~~~~~~~~~D-~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~i-v~iNK~  127 (194)
T cd01891          64 DTKINIVDTPGHAD----FGGEVERVLSMVD-GVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKI  127 (194)
T ss_pred             CEEEEEEECCCCHH----HHHHHHHHHHHCC-EEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECC
T ss_conf             98899998998477----7778987764344-6789865378975899999999987299749-988564


No 396
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane.
Probab=78.87  E-value=3.2  Score=20.77  Aligned_cols=121  Identities=19%  Similarity=0.126  Sum_probs=68.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC-CCCCCCHHH---HHHHHHCCCCCCCCCCCCCCCCCHHHHHHH-H
Q ss_conf             32999835898747999999999984048612013-887380689---999985578731144300145103478899-9
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS-GMYEETDSK---TIHRIGRIPKSHIIPEKWKLRTPASPHLAA-E   77 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~-G~~~~~D~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   77 (217)
                      +++=+.| .||+||++.-.+|+|.++..|-  |+- |  ..=|..   .=+++++.-+-...+..-+|+....||... .
T Consensus      1287 Q~VGlLG-RTGsGKSTLLSAlLRL~~T~GE--I~IDG--vSW~SvtLQ~WRKAFGViPQKvFi~sGTFR~NLDPy~~~SD 1361 (1534)
T TIGR01271      1287 QRVGLLG-RTGSGKSTLLSALLRLLSTEGE--IQIDG--VSWNSVTLQKWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSD 1361 (1534)
T ss_pred             CEEEEEE-CCCCCHHHHHHHHHHHCCCCCC--EEECC--EEECCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCCH
T ss_conf             3577530-2687678999999996077981--67623--35052122003444131563478831551136881342260


Q ss_pred             HHHCCCHHH------HHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH--HCCCEEEEEC
Q ss_conf             850235078------86422328879992276555667675308999997--4794489705
Q gi|254780487|r   78 IDGVIIDPA------TINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIER--WQFPIILCAR  131 (217)
Q Consensus        78 ~~~~~i~~~------~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~--l~~~vILV~~  131 (217)
                      .|-.++...      ...-+.+-|++|++|--   +-...-.-..=+||.  =+|.++|.--
T Consensus      1362 ~E~WkVaeEVGLkSvIEQFPdKLdF~L~DGGy---vLS~GHKQLMCLARSiLSKAkILLLDE 1420 (1534)
T TIGR01271      1362 EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGY---VLSNGHKQLMCLARSILSKAKILLLDE 1420 (1534)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCEEEECCCE---EEECCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             35666654315431100088841248862867---831641689999988886533222148


No 397
>PRK10263 DNA translocase FtsK; Provisional
Probab=78.84  E-value=1.9  Score=22.22  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             29998358987479999999999
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHA   26 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~   26 (217)
                      .++|+|| ||+||+...-.++-.
T Consensus      1012 HLLIAGt-TGSGKSV~iNsmI~S 1033 (1355)
T PRK10263       1012 HLLVAGT-TGSGKSVGVNAMILS 1033 (1355)
T ss_pred             CEEEECC-CCCCCHHHHHHHHHH
T ss_conf             1134046-788830439999999


No 398
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis.  The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes.  CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space.  In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=78.73  E-value=4.8  Score=19.68  Aligned_cols=25  Identities=20%  Similarity=0.432  Sum_probs=20.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             32999835898747999999999984
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      ..+.|.|. +|+|||+..-.|+.-++
T Consensus        29 e~~aivG~-sGsGKSTLl~~l~G~~~   53 (178)
T cd03247          29 EKIALLGR-SGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             CEEEEECC-CCCHHHHHHHHHHHCCC
T ss_conf             99999999-98759999999986176


No 399
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=78.72  E-value=1.3  Score=23.28  Aligned_cols=134  Identities=16%  Similarity=0.239  Sum_probs=59.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCC--EECCCCCCCHHHHHHHHHCCCCCCC---CCCCCCCCCCHHH-----------
Q ss_conf             35898747999999999984048612--0138873806899999855787311---4430014510347-----------
Q gi|254780487|r    9 GTDTSVGKTIFASALVHALNAYYWKP--IQSGMYEETDSKTIHRIGRIPKSHI---IPEKWKLRTPASP-----------   72 (217)
Q Consensus         9 GT~t~vGKT~vs~~L~~~l~~~~~KP--v~~G~~~~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----------   72 (217)
                      |. ||+|||++.+-+++.++    ||  |-+- ...==+++....-..=+..+   .++.|-|-+|-+.           
T Consensus        36 Gv-TGsGKTFT~AnVIa~~~----rPTLV~aH-NKTLAAQLY~EfKefFPeNAVEYFvSYYDYYQPEAYvP~~DtyIEKd  109 (667)
T TIGR00631        36 GV-TGSGKTFTMANVIAQVQ----RPTLVLAH-NKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKD  109 (667)
T ss_pred             EE-ECCCHHHHHHHHHHHHC----CCEEEECC-CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECC
T ss_conf             32-14862788989999847----98499857-77679999999986386772452552032378732147988413045


Q ss_pred             -HHHHHHHHCCCHHHHHHHHHHCCEEEEECCC---CCCCCCCCCCCHHHHHHHHCCCEEEEECC--CCCHHHHHHHHHHH
Q ss_conf             -8899985023507886422328879992276---55566767530899999747944897057--76504579999999
Q gi|254780487|r   73 -HLAAEIDGVIIDPATINPPDINDSIIIEGIG---GLLVPLTTEYLFIDLIERWQFPIILCART--SLGTINHSLLSLET  146 (217)
Q Consensus        73 -~~~~~~~~~~i~~~~~~~~~~~D~viIEGag---g~~~~~~~~~~~~dla~~l~~~vILV~~~--~~g~i~~~~l~~~~  146 (217)
                       -...++|.-.+ .+...+.+..|++||=.+.   |+.+|......          -+-|.++.  ....+-.-+..++|
T Consensus       110 aSINdeIerlR~-SAT~SLl~RrDVIVVASVScIYGLG~P~~Y~~~----------~~~l~vG~~~~~~~ll~~LV~lqY  178 (667)
T TIGR00631       110 ASINDEIERLRL-SATKSLLERRDVIVVASVSCIYGLGSPEEYLKM----------VLHLEVGKEIDRRELLRRLVELQY  178 (667)
T ss_pred             CCHHHHHHHHHH-HHHHHHCCCCCEEEEEEEEEECCCCCCHHHHCC----------EEEEEECCCCCHHHHHHHHHHHCE
T ss_conf             530046767788-988864237878999875520688882556422----------786540785588999988634030


Q ss_pred             HHHC-----C-CEEEEEEE
Q ss_conf             9847-----9-90799997
Q gi|254780487|r  147 LRNR-----N-INIIGIAF  159 (217)
Q Consensus       147 ~~~~-----g-~~i~GiIl  159 (217)
                      -+++     | =++.|=|+
T Consensus       179 ~RNd~~f~RG~FRvrGDVv  197 (667)
T TIGR00631       179 ERNDVDFQRGTFRVRGDVV  197 (667)
T ss_pred             EECCEECCCCCEEEEEEEE
T ss_conf             5712340577125763189


No 400
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461    Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=78.69  E-value=2.3  Score=21.76  Aligned_cols=20  Identities=35%  Similarity=0.617  Sum_probs=10.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHH
Q ss_conf             2999835898747999999999
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVH   25 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~   25 (217)
                      .||| |- +|||||.++=||++
T Consensus       232 Pl~V-GE-PGVGKTAI~EGLA~  251 (774)
T TIGR02639       232 PLLV-GE-PGVGKTAIVEGLAQ  251 (774)
T ss_pred             CCEE-CC-CCCCHHHHHHHHHH
T ss_conf             7204-48-88644899999999


No 401
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=78.65  E-value=4.9  Score=19.66  Aligned_cols=22  Identities=14%  Similarity=0.134  Sum_probs=12.7

Q ss_pred             EEECCCCCCCHHHHHHHHHHHH
Q ss_conf             9983589874799999999998
Q gi|254780487|r    6 VIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         6 ~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      =++-+.+|.|-|-...|++.++
T Consensus        77 gv~~~t~GpG~~Na~~gi~~A~   98 (588)
T CHL00099         77 GVCFATSGPGATNLVTGIATAQ   98 (588)
T ss_pred             EEEEECCCHHHHHHHHHHHHHH
T ss_conf             8999803778999999999999


No 402
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.62  E-value=2.8  Score=21.12  Aligned_cols=29  Identities=28%  Similarity=0.290  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      -++|||. ||+|||+.--.++..++....|
T Consensus       260 liLvTGP-TGSGKTTTLY~~L~~ln~~~~n  288 (500)
T COG2804         260 LILVTGP-TGSGKTTTLYAALSELNTPERN  288 (500)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHCCCCCE
T ss_conf             8999689-9998899999999986278850


No 403
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=78.58  E-value=2.7  Score=21.24  Aligned_cols=15  Identities=33%  Similarity=0.410  Sum_probs=10.2

Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             987479999999999
Q gi|254780487|r   12 TSVGKTIFASALVHA   26 (217)
Q Consensus        12 t~vGKT~vs~~L~~~   26 (217)
                      +|||||.+.=||++.
T Consensus       217 pGVGKTAIvEGLA~r  231 (852)
T TIGR03345       217 AGVGKTAVVEGLALR  231 (852)
T ss_pred             CCCCHHHHHHHHHHH
T ss_conf             998799999999999


No 404
>PRK00698 tmk thymidylate kinase; Validated
Probab=78.54  E-value=4.9  Score=19.65  Aligned_cols=51  Identities=18%  Similarity=0.146  Sum_probs=34.2

Q ss_pred             CCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCH-HHHHHHHH
Q ss_conf             983-29998358987479999999999840486120138873806-89999985
Q gi|254780487|r    1 MKL-RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETD-SKTIHRIG   52 (217)
Q Consensus         1 M~~-~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D-~~~~~~~~   52 (217)
                      |+- =|.|-|.+ |+|||+.+-.|.+.|+..+++-+.+..|.++. ...+++..
T Consensus         1 mkG~fIviEGiD-GsGKsTq~~~L~~~L~~~g~~v~~t~eP~~t~~g~~ir~~~   53 (204)
T PRK00698          1 MRGMFITIEGID-GAGKSTQIELLAERLEEQGRDVVFTREPGGTPLGEKLRELL   53 (204)
T ss_pred             CCCEEEEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             983199998899-99899999999999996799789986999980699999998


No 405
>PRK08263 short chain dehydrogenase; Provisional
Probab=78.38  E-value=0.89  Score=24.30  Aligned_cols=33  Identities=15%  Similarity=0.094  Sum_probs=23.1

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             98329998358987479999999999840486120138
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG   38 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G   38 (217)
                      |+|.+||||.++|+|+.++     +.|-..|.+-+.++
T Consensus         2 ~gKv~lITGassGIG~a~A-----~~la~~G~~Vv~~~   34 (275)
T PRK08263          2 MGKVWFITGASRGFGREWT-----EAALERGDRVVATA   34 (275)
T ss_pred             CCCEEEEECCCHHHHHHHH-----HHHHHCCCEEEEEE
T ss_conf             8998999467439999999-----99998799899997


No 406
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif.  It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=78.32  E-value=2.2  Score=21.81  Aligned_cols=24  Identities=38%  Similarity=0.661  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             2999835898747999999999984
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      .++|+|+ |++|||..--.|+..+-
T Consensus        40 H~Lv~G~-tGsGKS~~l~~li~sl~   63 (202)
T pfam01580        40 HLLIAGA-TGSGKSTFLNTLILSLA   63 (202)
T ss_pred             CEEEECC-CCCCCCHHHHHHHHHHH
T ss_conf             6899658-99980099999999998


No 407
>cd00881 GTP_translation_factor GTP translation factor family.  This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation.  In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=78.31  E-value=5  Score=19.60  Aligned_cols=62  Identities=16%  Similarity=0.083  Sum_probs=38.8

Q ss_pred             HCCEEEEECCCCCCCCCCCCCCHHHHHHHH-CC-CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             288799922765556676753089999974-79-44897057765045799999999847990799997697
Q gi|254780487|r   93 INDSIIIEGIGGLLVPLTTEYLFIDLIERW-QF-PIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGD  162 (217)
Q Consensus        93 ~~D~viIEGagg~~~~~~~~~~~~dla~~l-~~-~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~  162 (217)
                      ++-+.+|...|..      + ...+..+.+ .+ -+|||+++..|--.++.-.++.++..++++ -+++|+.
T Consensus        61 ~~~i~~iDTPGh~------~-f~~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~-iv~iNKi  124 (189)
T cd00881          61 DRRVNFIDTPGHE------D-FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPI-IVAINKI  124 (189)
T ss_pred             CEEEEEEECCCCH------H-HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECC
T ss_conf             9899999699818------8-9999999986468569999879899878999999999769987-9999897


No 408
>PRK00049 elongation factor Tu; Reviewed
Probab=78.30  E-value=5  Score=19.60  Aligned_cols=120  Identities=14%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHCC-CCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf             983589874799999999998404-8612013887380689999985578731144300145103478899985023507
Q gi|254780487|r    7 IVGTDTSVGKTIFASALVHALNAY-YWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDP   85 (217)
Q Consensus         7 I~GT~t~vGKT~vs~~L~~~l~~~-~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   85 (217)
                      ++--|-|.|||+.+-.|...+... +..-...  ....                           ..+...+..+.+++.
T Consensus        16 ~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~--~~~~---------------------------D~~~eEr~rGiTid~   66 (397)
T PRK00049         16 GTIGHVDHGKTTLTAAITKVLAKKYGGAEAKA--YDQI---------------------------DNAPEEKARGITINT   66 (397)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHCCCCCHHH--HHHC---------------------------CCCHHHHHCCCEEEE
T ss_conf             99912588899999999866665438531001--3330---------------------------257667625816998


Q ss_pred             HHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             88642-23288799922765556676753089999974794-489705776504579999999984799079999769
Q gi|254780487|r   86 ATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFP-IILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG  161 (217)
Q Consensus        86 ~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~-vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~  161 (217)
                      .+... .++..+.+|.-.|.      .++.--=++...+++ ++||+++..|...++.--+..++..|++..-|.+|+
T Consensus        67 ~~~~~~t~~~~~~~iD~PGH------~~fiknmI~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~LGv~~~iV~vnK  138 (397)
T PRK00049         67 AHVEYETEKRHYAHVDCPGH------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNK  138 (397)
T ss_pred             EEEEEECCCCEEEEECCCCH------HHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             79999728814999517863------8889998730121567999997488866528999999998099827999986


No 409
>PRK10436 hypothetical protein; Provisional
Probab=78.14  E-value=3.5  Score=20.56  Aligned_cols=29  Identities=24%  Similarity=0.348  Sum_probs=22.1

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      -++|+|. ||+|||+.--++++.++....+
T Consensus       217 liLvtGP-TGSGKTTTLya~L~~l~~~~~~  245 (461)
T PRK10436        217 LVLVTGP-TGSGKTVTLYSALQTLNTAQIN  245 (461)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHCCCCCE
T ss_conf             7999789-9995699999999743467716


No 410
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322    These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=78.11  E-value=1.7  Score=22.52  Aligned_cols=40  Identities=15%  Similarity=0.206  Sum_probs=15.2

Q ss_pred             HHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf             8642232887999227655566767530899999747944897057
Q gi|254780487|r   87 TINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART  132 (217)
Q Consensus        87 ~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~  132 (217)
                      |.++.+....++|=|||-+..      -+|=+...|++..=|+.|.
T Consensus       174 fF~LEElP~~~v~vGAGYIAv------ELAGvLh~LG~~T~L~~R~  213 (475)
T TIGR01421       174 FFALEELPKRVVIVGAGYIAV------ELAGVLHGLGSKTHLVIRH  213 (475)
T ss_pred             EEHHHCCCCEEEEEECCHHHH------HHHHHHHHCCCCEEEEEEC
T ss_conf             002201787179990738988------8888873126402257736


No 411
>PRK08266 hypothetical protein; Provisional
Probab=78.08  E-value=5.1  Score=19.56  Aligned_cols=42  Identities=14%  Similarity=0.220  Sum_probs=29.7

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf             79448970577650457999999998479907999976977800
Q gi|254780487|r  123 QFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPK  166 (217)
Q Consensus       123 ~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~  166 (217)
                      +-+|+.+++  .|+.......+..+.+.++++.-||+|+...-.
T Consensus       417 ~~~Vv~i~G--DG~f~~~~~eL~Ta~r~~lpi~ivV~NN~~yg~  458 (531)
T PRK08266        417 DKAVVSITG--DGGFMFGVQELATAVQHNIGVVTLVFNNSAYGN  458 (531)
T ss_pred             CCCEEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf             996899984--368734199999999978691899996883268


No 412
>PRK08903 hypothetical protein; Validated
Probab=78.05  E-value=3.5  Score=20.54  Aligned_cols=29  Identities=21%  Similarity=0.168  Sum_probs=22.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      -+||.|- +|+|||...-++|+.....+.+
T Consensus        44 ~l~i~G~-~G~GKTHLl~a~~~~~~~~~~~   72 (227)
T PRK08903         44 FFYLWGE-AGSGRSHLLQALVAAASEGGKN   72 (227)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCC
T ss_conf             6999899-9998889999999999806997


No 413
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=78.01  E-value=2.5  Score=21.47  Aligned_cols=27  Identities=30%  Similarity=0.477  Sum_probs=22.0

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             9998358987479999999999840486
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      ||..|- +|+|||++.-.|++.++..++
T Consensus         2 I~LiG~-~G~GKstigk~la~~l~~~fi   28 (154)
T cd00464           2 IVLIGM-MGAGKTTVGRLLAKALGLPFV   28 (154)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHCCCEE
T ss_conf             899889-999889999999999798979


No 414
>PRK13948 shikimate kinase; Provisional
Probab=77.97  E-value=2.7  Score=21.26  Aligned_cols=28  Identities=21%  Similarity=0.260  Sum_probs=23.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             29998358987479999999999840486
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      .|+..|- +|+|||+|.-.|++.+...++
T Consensus        12 ~IvLIG~-mGsGKStiGk~LA~~l~~~fi   39 (182)
T PRK13948         12 FVALAGF-MGTGKSRIGWELSRALALHFV   39 (182)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHCCCEE
T ss_conf             1898899-999889999999999695988


No 415
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=77.89  E-value=5.1  Score=19.52  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=24.4

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             98329998358987479999999999840486120138
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG   38 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G   38 (217)
                      |.|..+|||.+.|+|+.+     ++.|-..|++-+.+.
T Consensus         1 M~KvalITGas~GIG~a~-----a~~la~~G~~Vv~~~   33 (245)
T PRK12824          1 MKKIALVTGAKRGIGSAI-----ARELLADGYRVIATY   33 (245)
T ss_pred             CCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEE
T ss_conf             985999947888899999-----999998799899995


No 416
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export.  They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins.  The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities.  The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.58  E-value=5.2  Score=19.47  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             32999835898747999999999984
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      +.+-|.|. +|+|||+..-.|++.++
T Consensus        29 e~i~ivG~-sGsGKSTLl~ll~gl~~   53 (171)
T cd03228          29 EKVAIVGP-SGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             CEEEEECC-CCCHHHHHHHHHHCCCC
T ss_conf             89999999-99839999999976775


No 417
>cd01393 recA_like RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57.  Archaea have the RecA-like homologs radA and radB.
Probab=77.21  E-value=5.3  Score=19.40  Aligned_cols=24  Identities=25%  Similarity=0.218  Sum_probs=18.2

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             9998358987479999999999840
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      .-|+|- +++|||.+++-|+...+.
T Consensus        22 tEi~G~-~gsGKT~l~lqla~~~q~   45 (226)
T cd01393          22 TEIFGE-FGSGKTQLCLQLAVEAQL   45 (226)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHHC
T ss_conf             999999-999899999999999854


No 418
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=77.16  E-value=4  Score=20.22  Aligned_cols=30  Identities=17%  Similarity=0.241  Sum_probs=21.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             3299983589874799999999998404861
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      ..++|+|. +|+|||+.++-++...-..+-|
T Consensus        33 ~~~li~G~-~G~GKt~~~~~f~~~~~~~g~~   62 (241)
T PRK06067         33 SLILIEGE-NDTGKSVLSQQFVWGALNQGKR   62 (241)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHHHHCCCE
T ss_conf             08999807-9988799999999999867982


No 419
>TIGR01826 CofD_related conserved hypothetical protein; InterPro: IPR010119   This entry represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (IPR010115 from INTERPRO), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis..
Probab=77.15  E-value=2.6  Score=21.34  Aligned_cols=70  Identities=20%  Similarity=0.236  Sum_probs=47.4

Q ss_pred             HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH---CCCEEEEECCC--CC-HHHHHH-HHHHHHHHC-CCEEEE-EEEC
Q ss_conf             223288799922765556676753089999974---79448970577--65-045799-999999847-990799-9976
Q gi|254780487|r   90 PPDINDSIIIEGIGGLLVPLTTEYLFIDLIERW---QFPIILCARTS--LG-TINHSL-LSLETLRNR-NINIIG-IAFI  160 (217)
Q Consensus        90 ~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l---~~~vILV~~~~--~g-~i~~~~-l~~~~~~~~-g~~i~G-iIlN  160 (217)
                      .-+++|.+| =|.|++|+.+.-.++.-++++++   .||++.|++.-  .| +.+-++ --++.+.++ |.+..= ||+|
T Consensus       187 aI~eADlIi-lGPGSLyTSI~PnLLvp~i~~A~~~s~A~kvYV~NlmtqpGET~~~~~~dHv~~l~~h~G~~~iD~Vlvn  265 (331)
T TIGR01826       187 AIREADLII-LGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNLMTQPGETDGFSVEDHVKALHRHLGKPFIDVVLVN  265 (331)
T ss_pred             HHHHCCEEE-ECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf             996669278-7772457774243216789999972899899973356688866477289999999986689834478717


No 420
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=77.14  E-value=5.4  Score=19.39  Aligned_cols=113  Identities=11%  Similarity=0.052  Sum_probs=53.1

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC-CCCCHHHHHHHHHCCCC--CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             83299983589874799999999998404861201388-73806899999855787--3114430014510347889998
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM-YEETDSKTIHRIGRIPK--SHIIPEKWKLRTPASPHLAAEI   78 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~-~~~~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   78 (217)
                      .+++.|.|- .++|||++..-+++..+..... |-.+. .+..+...+.+......  ....+-.-....+...+..+..
T Consensus        15 GQr~~I~g~-~g~GKt~l~~~i~~~~~~~~~~-V~~~iGer~~ev~~~~~~~~~~~~~~~t~vv~~~~d~~~~~r~~~~~   92 (213)
T pfam00006        15 GQRIGIFGG-SGTGKTVLLGMIARNAKADVVE-VYVLIGERGREVAEFIEELLGEGALKRTVVVAATSDEPPAERYLAPY   92 (213)
T ss_pred             CCEEEEECC-CCCCHHHHHHHHHHHHHHCCCE-EEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf             888778789-9998899999999856618935-99813777799999999752137665069998468898789999999


Q ss_pred             HHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
Q ss_conf             5023507886422328879992276555667675308999997479448970
Q gi|254780487|r   79 DGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCA  130 (217)
Q Consensus        79 ~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~  130 (217)
                      ....+.+ +.+ .++.|++++            -.+..++|+.++-=..+..
T Consensus        93 ~a~~~AE-yf~-~~G~dVlvi------------~Dsltr~A~A~reis~~~g  130 (213)
T pfam00006        93 TALTIAE-YFR-DQGKDVLLL------------LDSLTRFARALREISLLLG  130 (213)
T ss_pred             HHHHHHH-HHH-HCCCCEEEE------------CCCHHHHHHHHHHHCCCCC
T ss_conf             9999999-999-769968998------------3780599999876500147


No 421
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology.  The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=77.07  E-value=5.4  Score=19.38  Aligned_cols=29  Identities=31%  Similarity=0.335  Sum_probs=23.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      +|+|+|-+|| |--+=+++|++.|+..+++
T Consensus         1 ki~i~~GGTG-GHi~Palala~~L~~~g~~   29 (350)
T cd03785           1 RILIAGGGTG-GHIFPALALAEELRERGAE   29 (350)
T ss_pred             CEEEEECCCH-HHHHHHHHHHHHHHHCCCE
T ss_conf             9899947858-9999999999999978798


No 422
>PRK00625 shikimate kinase; Provisional
Probab=76.89  E-value=3.1  Score=20.89  Aligned_cols=40  Identities=28%  Similarity=0.512  Sum_probs=28.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHH
Q ss_conf             32999835898747999999999984048612013887380689999985
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIG   52 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~   52 (217)
                      +.||..|- +|+|||++.-.|++.++..++         |.|..+.++..
T Consensus         1 MnI~LIG~-mGsGKStiGk~LA~~l~~~Fv---------D~D~~Ie~~~~   40 (173)
T PRK00625          1 MQIFLCGL-PTVGKTSFGKALAKFLSLPFF---------DTDDLIVSNYH   40 (173)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHCCCEE---------ECHHHHHHHHC
T ss_conf             92999899-999889999999999399957---------74999999868


No 423
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=76.85  E-value=2.6  Score=21.38  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             998358987479999999999840486
Q gi|254780487|r    6 VIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         6 ~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      ++.|. +|+|||+++-++++.++..++
T Consensus         2 Ll~Gp-pGtGKT~~a~~la~~~~~~~~   27 (131)
T pfam00004         2 LLYGP-PGTGKTTLAKAVAKELGAPFI   27 (131)
T ss_pred             EEECC-CCCCHHHHHHHHHHHHCCCCE
T ss_conf             87899-999999999999999789853


No 424
>KOG0460 consensus
Probab=76.50  E-value=3.9  Score=20.25  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=15.1

Q ss_pred             CCCCCHHHHHHHHHHHHHCCC
Q ss_conf             898747999999999984048
Q gi|254780487|r   11 DTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus        11 ~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      +-|-|||+.|+++-+.+...+
T Consensus        62 HVDHGKTTLTaAITkila~~g   82 (449)
T KOG0460          62 HVDHGKTTLTAAITKILAEKG   82 (449)
T ss_pred             CCCCCCHHHHHHHHHHHHHCC
T ss_conf             335772008999999997516


No 425
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=76.44  E-value=3.7  Score=20.38  Aligned_cols=29  Identities=24%  Similarity=0.385  Sum_probs=21.7

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             832999835898747999999999984048
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      .|++.|.|+. ..|||+.+-.|++.++..+
T Consensus       231 vKkVvIlG~E-STGKTTL~~~LA~~ynT~~  259 (411)
T PRK08099        231 VRTVAILGGE-SSGKSTLVNKLANIFNTTS  259 (411)
T ss_pred             CEEEEEECCC-CCCHHHHHHHHHHHHCCCC
T ss_conf             3689998999-8888999999999978995


No 426
>PRK10865 protein disaggregation chaperone; Provisional
Probab=76.41  E-value=3.4  Score=20.62  Aligned_cols=20  Identities=30%  Similarity=0.619  Sum_probs=15.7

Q ss_pred             EECCCCCCCHHHHHHHHHHHH
Q ss_conf             983589874799999999998
Q gi|254780487|r    7 IVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         7 I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      ..|- +|||||.+.=||++.+
T Consensus       204 LvGe-pGVGKTAIvEGLA~rI  223 (857)
T PRK10865        204 LIGE-PGVGKTAIVEGLAQRI  223 (857)
T ss_pred             EECC-CCCCHHHHHHHHHHHH
T ss_conf             8789-9988999999999999


No 427
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487   ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent  molecular chaperone and is the regulatory subunit of the ClpXP protease .   ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates .    The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA .  ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=76.33  E-value=1.7  Score=22.58  Aligned_cols=182  Identities=20%  Similarity=0.239  Sum_probs=74.8

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE---------CCCCCCCHHHHHHHHHCCCCCCCCCCC---CCCCCCHHH
Q ss_conf             99983589874799999999998404861201---------388738068999998557873114430---014510347
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQ---------SGMYEETDSKTIHRIGRIPKSHIIPEK---WKLRTPASP   72 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~---------~G~~~~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~   72 (217)
                      |.-.|- ||||||..+--|+|.|++    ||+         +| ...+|+..+..-+-..+++..-..   ..|--. ..
T Consensus       155 ILLiGP-TGSGKTLLAqTLA~~L~V----PfAiADATtLTEAG-YVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDE-ID  227 (452)
T TIGR00382       155 ILLIGP-TGSGKTLLAQTLARILNV----PFAIADATTLTEAG-YVGEDVENILLKLLQAADYDVEKAQKGIIYIDE-ID  227 (452)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHCCC----CEEECCHHHHHCCC-CCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEEC-CC
T ss_conf             245468-885268999999987388----74211111020066-424228899999987414552452785089842-23


Q ss_pred             HHHHHHHHCCCHHHHH-HHHHHCCEEEEECCCCCCCCCCCCC--CHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             8899985023507886-4223288799922765556676753--089999974794489705776504579999999984
Q gi|254780487|r   73 HLAAEIDGVIIDPATI-NPPDINDSIIIEGIGGLLVPLTTEY--LFIDLIERWQFPIILCARTSLGTINHSLLSLETLRN  149 (217)
Q Consensus        73 ~~~~~~~~~~i~~~~~-~~~~~~D~viIEGagg~~~~~~~~~--~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~  149 (217)
                      -.+.+-|+..|..+.. .--+++=.=||||+--- +|+-.++  -.-|+...=-..++.+++..=.++...+-     ++
T Consensus       228 KIaRkSEN~SITRDVSGEGVQQALLKi~EGTvA~-vPPqGGRKHP~~~~iqiDTs~ILFICGGAF~GL~~iI~-----~R  301 (452)
T TIGR00382       228 KIARKSENPSITRDVSGEGVQQALLKIIEGTVAN-VPPQGGRKHPQQEFIQIDTSNILFICGGAFVGLEKIIK-----KR  301 (452)
T ss_pred             CHHHHCCCCEEEEEECCCHHHHHHHHHHHCCEEE-ECCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHHH-----HH
T ss_conf             1012157780112217554999999876032343-17544886886576886476400110543444899998-----87


Q ss_pred             CCCEE-EEEEECCCCCCCH---HHHHHH-----HC--C-CC-EEEEECC---CCCCCHHHHHHHHH
Q ss_conf             79907-9999769778005---999998-----61--9-98-9999478---88888879999999
Q gi|254780487|r  150 RNINI-IGIAFIGDSMPKV---EETIVK-----IG--R-IP-HLGRLPK---IDPIDPDVLHQKFQ  199 (217)
Q Consensus       150 ~g~~i-~GiIlN~~~~~~~---~~~le~-----~~--~-ip-vLG~iP~---~~~~~~~~l~~~~~  199 (217)
                      -+-+. .|+--........   .+.+..     +.  | || ..|.||-   ++.++.|.+-+++.
T Consensus       302 ~~~~~~iGF~~~~~~~~~~~~~~~~L~~v~~~DL~kFGLIPEfIGRLPV~a~L~~L~~eAL~~IL~  367 (452)
T TIGR00382       302 TEKKSSIGFGAEVKKKSKEKSEEELLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILT  367 (452)
T ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHH
T ss_conf             455533354552100457878999997517111221055510110534020278788789999852


No 428
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=76.28  E-value=5.7  Score=19.25  Aligned_cols=123  Identities=15%  Similarity=0.177  Sum_probs=54.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHH-HHH----HCC---CCCCEECCCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCCH-HHH
Q ss_conf             299983589874799999999-998----404---8612013887380689999985578731144-300145103-478
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALV-HAL----NAY---YWKPIQSGMYEETDSKTIHRIGRIPKSHIIP-EKWKLRTPA-SPH   73 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~-~~l----~~~---~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~   73 (217)
                      .+...=|+.|=|||+.++|++ |++    |+.   ++|    |.....+...+   .......... .++.+.... ..+
T Consensus        23 Gli~VytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlK----g~~~~GE~~~l---~~~~i~~~~~g~g~~~~~~~~e~d   95 (190)
T PRK05986         23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIK----GAWSTGERNLL---EGPGVEFHVMGTGFTWETQDRERD   95 (190)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEC----CCCCHHHHHHH---CCCCCEEEECCCCCCCCCCCCHHH
T ss_conf             67999806998718899999999836998899999944----88545778874---379828998789985778971899


Q ss_pred             HHHHHHHCCCHHHHHH-HHHHCCEEEEECCCCCC-CCCCCCCCHHHHHHH--HCCCEEEEECCCCC
Q ss_conf             8999850235078864-22328879992276555-667675308999997--47944897057765
Q gi|254780487|r   74 LAAEIDGVIIDPATIN-PPDINDSIIIEGIGGLL-VPLTTEYLFIDLIER--WQFPIILCARTSLG  135 (217)
Q Consensus        74 ~~~~~~~~~i~~~~~~-~~~~~D~viIEGagg~~-~~~~~~~~~~dla~~--l~~~vILV~~~~~g  135 (217)
                      .....+.  ...+... .+..+|++|.+-..... .+........++.+.  -+..|||-++.-..
T Consensus        96 ~~~a~~~--~~~a~~~l~~~~~dlvVLDEi~~Al~~gll~~eevi~~L~~rp~~~evVLTGR~~p~  159 (190)
T PRK05986         96 IAAAREG--WEEAKRMLADESYDLVVLDELTYALKYGYLDLEEVLEALNNRPGMQHVVITGRGAPR  159 (190)
T ss_pred             HHHHHHH--HHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf             9999999--999999985888888953767999855995899999999828998769997999999


No 429
>PRK04132 replication factor C small subunit; Provisional
Probab=76.24  E-value=2.3  Score=21.72  Aligned_cols=23  Identities=43%  Similarity=0.564  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             299983589874799999999998
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      .++-+|. +|||||+.+++|+|.|
T Consensus        48 HLLFaGP-PGvGKt~~al~lar~l   70 (863)
T PRK04132         48 HLLFAGP-PGVGKTTAALALAREL   70 (863)
T ss_pred             CEEECCC-CCCCCHHHHHHHHHHH
T ss_conf             4430489-9877144788888876


No 430
>COG3911 Predicted ATPase [General function prediction only]
Probab=76.17  E-value=2.8  Score=21.13  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      ++||..-++|.|||+.-.    +|..+||-
T Consensus        10 ~~fIltGgpGaGKTtLL~----aLa~~Gfa   35 (183)
T COG3911          10 KRFILTGGPGAGKTTLLA----ALARAGFA   35 (183)
T ss_pred             EEEEEECCCCCCHHHHHH----HHHHCCCE
T ss_conf             389983799976899999----99975863


No 431
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=76.11  E-value=3.7  Score=20.40  Aligned_cols=28  Identities=25%  Similarity=0.349  Sum_probs=22.9

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             98329998358987479999999999840
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      |..+++++|. .|+|||+++..+++.+-.
T Consensus        38 l~HA~Lf~Gp-~GiGK~tlA~~~A~~ll~   65 (363)
T PRK07471         38 LHHAWLIGGP-QGIGKATLAYRMARFLLA   65 (363)
T ss_pred             CCCEEEEECC-CCCCHHHHHHHHHHHHHC
T ss_conf             7645876799-981889999999999857


No 432
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=76.08  E-value=3.6  Score=20.52  Aligned_cols=14  Identities=43%  Similarity=0.577  Sum_probs=6.8

Q ss_pred             CCCCHHHHHHHHHH
Q ss_conf             98747999999999
Q gi|254780487|r   12 TSVGKTIFASALVH   25 (217)
Q Consensus        12 t~vGKT~vs~~L~~   25 (217)
                      +|||||.+.=||++
T Consensus       216 pGVGKTAIvEGLA~  229 (758)
T PRK11034        216 SGVGKTAIAEGLAW  229 (758)
T ss_pred             CCCCHHHHHHHHHH
T ss_conf             99869999999999


No 433
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=76.06  E-value=3.2  Score=20.77  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=22.3

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             8329998358987479999999999840
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      +-+++.+|.. |+|||+++..++++++.
T Consensus        38 ~HAyLF~Gpr-GtGKts~Ari~AkaLnC   64 (563)
T PRK06674         38 SHAYLFSGPR-GTGKTSIAKVFAKAVNC   64 (563)
T ss_pred             CCEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf             5034312899-86899999999998579


No 434
>cd01885 EF2 EF2 (for archaea and eukarya).  Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes.  The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome.  The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins.  Two major mechanisms are known to regulate protein elongation and both involve eEF2.  First, eEF2 can be modulated by reversible phosphorylation.  Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes.  Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2.  In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation.  Seco
Probab=76.02  E-value=5.3  Score=19.42  Aligned_cols=61  Identities=7%  Similarity=0.010  Sum_probs=38.4

Q ss_pred             CCEEEEECCCCCCCCCCCCCCHHHHHHHHCC--CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             8879992276555667675308999997479--44897057765045799999999847990799997697
Q gi|254780487|r   94 NDSIIIEGIGGLLVPLTTEYLFIDLIERWQF--PIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGD  162 (217)
Q Consensus        94 ~D~viIEGagg~~~~~~~~~~~~dla~~l~~--~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~  162 (217)
                      +-+-+|...|..       ....++.+.+.+  -++||+++-.|.-.++...+..+.+.++++ -+++|+.
T Consensus        73 ~~inlIDTPGH~-------dF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~l~~-il~iNKi  135 (222)
T cd01885          73 YLINLIDSPGHV-------DFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKP-VLVINKI  135 (222)
T ss_pred             EEEEEEECCCHH-------HHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCE-EEEEECC
T ss_conf             389997288569-------89999999998568179961045785778999999999859997-9999890


No 435
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.    Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=75.87  E-value=5.8  Score=19.18  Aligned_cols=144  Identities=15%  Similarity=0.192  Sum_probs=77.4

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE-ECCC-------CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             8329998358987479999999999840486120-1388-------7380689999985578731144300145103478
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPI-QSGM-------YEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPH   73 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv-~~G~-------~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (217)
                      -.++-|.|- ||+||||.+=.|     |++|.|= ++|.       ..+-|-..+++....    -.=.|+.|....-..
T Consensus       500 n~k~tiVGm-SGSGKsTLaKLL-----V~FfePQ~~sG~I~Lng~~l~~iD~h~LRq~INY----lPQeP~IF~GsILeN  569 (710)
T TIGR01193       500 NEKITIVGM-SGSGKSTLAKLL-----VGFFEPQAESGEILLNGISLKDIDRHELRQFINY----LPQEPYIFSGSILEN  569 (710)
T ss_pred             CCEEEEECC-CCCCHHHHHHHH-----HCCCCCCCCCCEEEECCCCHHHCCHHHHCCCCCC----CCCCCEEECCCHHHH
T ss_conf             854899736-797489999875-----2035899887736527824453373444123355----688784512317887


Q ss_pred             -------------HHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH--CCCEEEEECCCCCHHH
Q ss_conf             -------------8999850235078864223288799922765556676753089999974--7944897057765045
Q gi|254780487|r   74 -------------LAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERW--QFPIILCARTSLGTIN  138 (217)
Q Consensus        74 -------------~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l--~~~vILV~~~~~g~i~  138 (217)
                                   ....++-..|+.+-.+.+.+++--|=|-.+.+-.|   ..=-.-+||.|  +++|++---.  .+-=
T Consensus       570 LLlGak~~~~~~~i~~A~~iAEIk~DIe~mp~Gy~T~LS~~~~~iSGG---QKQRialARaLL~~s~vLilDEs--TSnL  644 (710)
T TIGR01193       570 LLLGAKENVSQDEILKAVEIAEIKDDIEKMPLGYQTELSEEGSSISGG---QKQRIALARALLTDSKVLILDES--TSNL  644 (710)
T ss_pred             HHHCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCEEECCCCCCCCCH---HHHHHHHHHHHCCCCCEEEEECC--CCHH
T ss_conf             650378998989999884020112458318887660001037411515---89999999986188867886244--3400


Q ss_pred             HHHHHHHHHHHC-CCEEEEEEEC
Q ss_conf             799999999847-9907999976
Q gi|254780487|r  139 HSLLSLETLRNR-NINIIGIAFI  160 (217)
Q Consensus       139 ~~~l~~~~~~~~-g~~i~GiIlN  160 (217)
                      ++++-..-.++. .++=|-+|+-
T Consensus       645 D~itE~KI~~nLl~l~dKTIIFv  667 (710)
T TIGR01193       645 DTITEKKIVENLLNLKDKTIIFV  667 (710)
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             37889999984246667626875


No 436
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=75.87  E-value=3.7  Score=20.38  Aligned_cols=27  Identities=26%  Similarity=0.381  Sum_probs=22.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             2999835898747999999999984048
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      .++|.|. ||.|||.++--+++.++...
T Consensus        44 n~~iyG~-~GTGKT~~~~~v~~~l~~~~   70 (366)
T COG1474          44 NIIIYGP-TGTGKTATVKFVMEELEESS   70 (366)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHHHHC
T ss_conf             0799889-99873289999999997331


No 437
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=75.83  E-value=4.1  Score=20.12  Aligned_cols=27  Identities=19%  Similarity=0.229  Sum_probs=21.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             3299983589874799999999998404
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAY   30 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~   30 (217)
                      .+++|.|- .|+|||+...-++..+..+
T Consensus         1 r~i~i~G~-aG~GKTtll~kl~~~wa~g   27 (165)
T pfam05729         1 RTVILQGE-AGSGKTTLLQKLALLWAQG   27 (165)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHHCC
T ss_conf             98999827-9898999999999999869


No 438
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=75.74  E-value=5.9  Score=19.16  Aligned_cols=129  Identities=14%  Similarity=0.109  Sum_probs=54.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHH-HHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCC---CCCCCCCCCCC-CHHHH-HHH
Q ss_conf             3299983589874799999999-998404861201388738068999998557873---11443001451-03478-899
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALV-HALNAYYWKPIQSGMYEETDSKTIHRIGRIPKS---HIIPEKWKLRT-PASPH-LAA   76 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~-~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~-~~~   76 (217)
                      ..+.|.|. +|+|||+.++-++ +++...+-|-+=... +++-..+..+.....-+   ...-....+.. ..... ...
T Consensus        20 s~~LI~G~-pGsGKT~la~qfl~~ga~~~ge~~lYis~-ee~~~~l~~~~~~~g~~~~~~~~~g~l~i~d~~~~~~~~~~   97 (231)
T pfam06745        20 RVVLITGG-PGTGKTIFGLQFLYNGALEYGEPGVYVTL-EEPPEDLRENAKSFGWDLEKLEEEGKLAIIDASTSGIGIAE   97 (231)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEEE-CCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf             69999858-97259999999999999865896899981-37999999999982998589864696789862544222100


Q ss_pred             HHHHCCCHHHH-----HHHHHHCCEEEEECCCCCCCCCCCC------CCHHHHHHHHCCCEEEEECCC
Q ss_conf             98502350788-----6422328879992276555667675------308999997479448970577
Q gi|254780487|r   77 EIDGVIIDPAT-----INPPDINDSIIIEGIGGLLVPLTTE------YLFIDLIERWQFPIILCARTS  133 (217)
Q Consensus        77 ~~~~~~i~~~~-----~~~~~~~D~viIEGagg~~~~~~~~------~~~~dla~~l~~~vILV~~~~  133 (217)
                      .......+...     .-...+.+.++|.+...+.......      ....+..+.+++.++++....
T Consensus        98 ~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsit~l~~~~~~~~~r~~l~~l~~~lk~~g~t~l~t~e~~  165 (231)
T pfam06745        98 VKGRFDLEELIERLREAIREIGAKRVVIDSITTLFYLLKPAMAREILRRLKRVLKKLGVTAIFTSEKP  165 (231)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf             11227999999999999997199889997641640058899999999999999997699199998212


No 439
>TIGR01935 NOT-MenG RraA family; InterPro: IPR010203   This entry includes a number of closely related sequences bacteria and plants. The Escherichia coli member of this family has been characterised as a regulator of RNase E  (see IPR004659 from INTERPRO), and its crystal structure has been analysed . E. coli RraA acts as a trans-acting modulator of RNA turnover, binding essential endonuclease RNase E and inhibiting RNA processing . RNase E forms the core of a large RNA-catalysis machine termed the degradosomes. RraA (and RraB) causes remodelling of degradosome composition, which is associated with alterations in RNA decay and global transcript abundance and as such is a bacterial mechanism for the regulation of RNA cleavage .; GO: 0008428 ribonuclease inhibitor activity, 0051252 regulation of RNA metabolic process.
Probab=75.72  E-value=3.5  Score=20.59  Aligned_cols=69  Identities=16%  Similarity=0.206  Sum_probs=45.3

Q ss_pred             CHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH--HCCCEEEEEEECCCCCCCHHHHHHHH-CCCCEEEEECCC
Q ss_conf             08999997479448970577650457999999998--47990799997697780059999986-199899994788
Q gi|254780487|r  114 LFIDLIERWQFPIILCARTSLGTINHSLLSLETLR--NRNINIIGIAFIGDSMPKVEETIVKI-GRIPHLGRLPKI  186 (217)
Q Consensus       114 ~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~--~~g~~i~GiIlN~~~~~~~~~~le~~-~~ipvLG~iP~~  186 (217)
                      ..-+++..-+.==|||+| +.||..+||+.-...+  ..+ .=.|||+|++-  +-.+.|++. .||.=||..|+-
T Consensus        48 lvr~~L~qpG~GrVLVVD-GgGSlr~ALlGd~lA~~A~~N-GWeGviv~GcV--RDv~~L~~~~lGv~ALAa~P~k  119 (155)
T TIGR01935        48 LVREVLEQPGAGRVLVVD-GGGSLRRALLGDNLAELAEEN-GWEGVIVHGCV--RDVAELAELDLGVKALAAHPRK  119 (155)
T ss_pred             HHHHHHHCCCCCCEEEEE-CCCHHHHHCCCCHHHHHHHHC-CCCEEEEECCH--HHHHHHHCCCCCCEEECCCCCC
T ss_conf             688998259997279995-885010210167567886505-95149996230--1688860489010010088876


No 440
>CHL00095 clpC Clp protease ATP binding subunit
Probab=75.62  E-value=3.7  Score=20.42  Aligned_cols=15  Identities=40%  Similarity=0.539  Sum_probs=9.2

Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             987479999999999
Q gi|254780487|r   12 TSVGKTIFASALVHA   26 (217)
Q Consensus        12 t~vGKT~vs~~L~~~   26 (217)
                      +|||||.+.=||++.
T Consensus       209 pGVGKTAIvEGLA~r  223 (823)
T CHL00095        209 PGVGKTAIAEGLAQR  223 (823)
T ss_pred             CCCCHHHHHHHHHHH
T ss_conf             998799999999997


No 441
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=75.60  E-value=3  Score=21.02  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=25.6

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCH
Q ss_conf             9998358987479999999999840486120138873806
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETD   44 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D   44 (217)
                      |-|-|+ +++|||+++-.|++.|.-.|   +.+|.....+
T Consensus         2 IaIdGp-agsGKsT~ak~lA~~l~~~~---ldtG~ir~~e   37 (147)
T cd02020           2 IAIDGP-AGSGKSTVAKLLAKKLGLPY---LDTGGIRTEE   37 (147)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHCCEE---ECCCCCCCHH
T ss_conf             888689-97898999999999909907---7665425489


No 442
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=75.56  E-value=3.8  Score=20.31  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             299983589874799999999998404
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAY   30 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~   30 (217)
                      .+||.|. +|+|||...-++++.+...
T Consensus        36 pl~i~G~-~G~GKTHLLqA~~~~~~~~   61 (219)
T pfam00308        36 PLFIYGG-VGLGKTHLLHAIGNYALRN   61 (219)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHHHH
T ss_conf             2699889-9998889999999999984


No 443
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=75.44  E-value=3.5  Score=20.57  Aligned_cols=32  Identities=19%  Similarity=0.412  Sum_probs=23.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             329998358987479999999999840486120
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      |.|.+.|. ||+||+++...|++.....+..++
T Consensus         3 r~iil~Gp-sg~GK~tl~~~l~~~~~~~~~~~v   34 (184)
T smart00072        3 RPIVLSGP-SGVGKGTLLAELIQEIPDAFERVV   34 (184)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             77999999-999999999999863964505778


No 444
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=75.32  E-value=2.7  Score=21.25  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             32999835898747999999999984
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      +.+.|.|. ||+|||++.-.|+|-+.
T Consensus       350 e~vaiVG~-SGsGKSTL~~LL~r~y~  374 (547)
T PRK10522        350 ELLFLIGG-NGSGKSTLAMLLTGLYQ  374 (547)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHCCCC
T ss_conf             88999899-99977999999828966


No 445
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=75.32  E-value=3.4  Score=20.61  Aligned_cols=27  Identities=33%  Similarity=0.450  Sum_probs=22.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             3299983589874799999999998404
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAY   30 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~   30 (217)
                      +.|.|+|| -|+|||+.+-.|+.-++..
T Consensus         5 ~~IvI~G~-IG~GKSTLa~~La~~l~~~   31 (216)
T COG1428           5 MVIVIEGM-IGAGKSTLAQALAEHLGFK   31 (216)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHCCC
T ss_conf             08998446-4468789999999883885


No 446
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=75.22  E-value=3.5  Score=20.58  Aligned_cols=43  Identities=26%  Similarity=0.188  Sum_probs=28.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCH-HHHHHHHH
Q ss_conf             358987479999999999840486120138873806-89999985
Q gi|254780487|r    9 GTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETD-SKTIHRIG   52 (217)
Q Consensus         9 GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D-~~~~~~~~   52 (217)
                      |.+ |+|||+.+-.|.+.|+..+++-+.+..+..+. +..++...
T Consensus         3 GiD-GsGKsTq~~~L~~~L~~~g~~v~~~~ep~~~~~g~~ir~~l   46 (186)
T pfam02223         3 GLD-GAGKTTQAELLKERLKEQGIKVVLTREPGGTPIGEKIRELL   46 (186)
T ss_pred             CCC-CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf             999-98999999999999998799089974999983799999998


No 447
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=75.07  E-value=3.4  Score=20.63  Aligned_cols=26  Identities=31%  Similarity=0.377  Sum_probs=22.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             329998358987479999999999840
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      ..|+.+|.. |+|||+++..|+++|+.
T Consensus        38 HAYLFsGpr-G~GKTt~ARilAkaLNC   63 (775)
T PRK07764         38 HAYLFSGPR-GCGKTSSARILARSLNC   63 (775)
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf             337623788-87888999999999668


No 448
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=74.96  E-value=3.5  Score=20.59  Aligned_cols=28  Identities=21%  Similarity=0.472  Sum_probs=21.9

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             99983589874799999999998404861
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      +++-|- +|+|||++...+++.+...++.
T Consensus         2 VLL~Gp-pG~GKT~l~~~lA~~~~~~~~~   29 (131)
T pfam07726         2 VLLEGV-PGLAKTLLARTLARSLGLDFRR   29 (131)
T ss_pred             EEEECC-CCCHHHHHHHHHHHHHCCCCEE
T ss_conf             878989-9876999999999995998168


No 449
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=74.93  E-value=3.7  Score=20.38  Aligned_cols=21  Identities=52%  Similarity=0.714  Sum_probs=9.5

Q ss_pred             EEECCCCCCCHHHHHHHHHHHH
Q ss_conf             9983589874799999999998
Q gi|254780487|r    6 VIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         6 ~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      +-+|. ||||||-.+-.|+..|
T Consensus       525 lF~GP-TGVGKTELAkaLA~~L  545 (786)
T COG0542         525 LFLGP-TGVGKTELAKALAEAL  545 (786)
T ss_pred             EEECC-CCCCHHHHHHHHHHHH
T ss_conf             86678-8656999999999996


No 450
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions.  The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=74.75  E-value=3.8  Score=20.35  Aligned_cols=24  Identities=25%  Similarity=0.529  Sum_probs=19.4

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             8329998358987479999999999
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHA   26 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~   26 (217)
                      .+.++|+|- ||+|||.+++.|++.
T Consensus        14 g~GvLi~G~-SG~GKS~lal~Li~r   37 (149)
T cd01918          14 GIGVLITGP-SGIGKSELALELIKR   37 (149)
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHC
T ss_conf             989999878-999989999999981


No 451
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB; InterPro: IPR013363    Proteins in this entry are the DotB component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This family is most closely related to the TraJ proteins of plasmid transfer (IPR013364 from INTERPRO), rather than to proteins of other type IV secretion systems..
Probab=74.44  E-value=3.6  Score=20.49  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             2999835898747999999999984
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      -+||+|. ||+||++.-+.++|-+-
T Consensus       136 ~v~~tGa-tGsGkstlla~iirel~  159 (358)
T TIGR02524       136 VVYVTGA-TGSGKSTLLAAIIRELI  159 (358)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHH
T ss_conf             6998626-77636889999999986


No 452
>PRK05642 DNA replication initiation factor; Validated
Probab=74.27  E-value=5.5  Score=19.31  Aligned_cols=28  Identities=14%  Similarity=0.160  Sum_probs=21.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             32999835898747999999999984048
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      +.+||.|. +|+|||...-+.|+.+...+
T Consensus        46 ~~l~i~G~-~G~GKTHLL~A~~~~~~~~~   73 (234)
T PRK05642         46 SLIYLWGK-DGVGRSHLLQAACLRFEQRG   73 (234)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHHHCC
T ss_conf             83899889-99988999999999998079


No 453
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=74.23  E-value=3.9  Score=20.23  Aligned_cols=24  Identities=38%  Similarity=0.563  Sum_probs=19.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             3299983589874799999999998
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      +-|.++|. ||||||++.-.|++-.
T Consensus         2 ~livl~Gp-sG~GK~tl~~~l~~~~   25 (180)
T TIGR03263         2 LLIVISGP-SGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHC
T ss_conf             39999899-9889999999999768


No 454
>KOG1610 consensus
Probab=74.03  E-value=6.5  Score=18.88  Aligned_cols=127  Identities=17%  Similarity=0.183  Sum_probs=67.0

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             83299983589874799999999998404861201388738068999998557873114430014510347889998502
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV   81 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (217)
                      +|.+||||.+||=|+     .||+.+-..||. |-+|+..+.-+..++....  .+...........+.+-..+++.-. 
T Consensus        29 ~k~VlITGCDSGfG~-----~LA~~l~~~Gf~-V~Agclt~~gae~L~~~~~--s~rl~t~~LDVT~~esi~~a~~~V~-   99 (322)
T KOG1610          29 DKAVLITGCDSGFGR-----LLAKKLDKKGFR-VFAGCLTEEGAESLRGETK--SPRLRTLQLDVTKPESVKEAAQWVK-   99 (322)
T ss_pred             CCEEEEECCCCHHHH-----HHHHHHHHCCCE-EEEEEECCCHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHH-
T ss_conf             737998347717779-----999999865887-8887206705898763233--8740247532588789999999999-


Q ss_pred             CCHHHHHHHHHHCCEEEEECCC-CCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             3507886422328879992276-55566767530899999747944897057765045799999999847
Q gi|254780487|r   82 IIDPATINPPDINDSIIIEGIG-GLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNR  150 (217)
Q Consensus        82 ~i~~~~~~~~~~~D~viIEGag-g~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~  150 (217)
                            ..+.++.=.-+|--|| ....+..+-.+..|+.+.++...       .|++.-+..-.-.+++.
T Consensus       100 ------~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNl-------lG~irvT~~~lpLlr~a  156 (322)
T KOG1610         100 ------KHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNL-------LGTIRVTKAFLPLLRRA  156 (322)
T ss_pred             ------HHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHC
T ss_conf             ------8646655135773366455668511152999999886530-------54899999888777760


No 455
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=73.99  E-value=4.1  Score=20.12  Aligned_cols=29  Identities=31%  Similarity=0.623  Sum_probs=23.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      -|..+|- +++|||+.+--|++.|+.....
T Consensus         3 LiIlTGy-PgsGKTtfakeLak~L~~~i~~   31 (261)
T COG4088           3 LIILTGY-PGSGKTTFAKELAKELRQEIWR   31 (261)
T ss_pred             EEEEECC-CCCCCHHHHHHHHHHHHHHHHH
T ss_conf             6998269-9988017899999999972001


No 456
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=73.89  E-value=3.5  Score=20.52  Aligned_cols=30  Identities=27%  Similarity=0.352  Sum_probs=21.9

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             8329998358987479999999999840486
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      .+-||.-|+ |.+|||+++..|-..+..-|+
T Consensus         2 G~II~LNG~-SSSGKSsiAraLQ~~l~~p~~   31 (175)
T cd00227           2 GRIIILNGG-SSAGKSSIARALQSVLAEPWL   31 (175)
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHHCCCCEE
T ss_conf             749998689-989889999999984767568


No 457
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=73.80  E-value=4  Score=20.22  Aligned_cols=28  Identities=25%  Similarity=0.446  Sum_probs=21.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             32999835898747999999999984048
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      |.|.++|. ||+|||++.-.|++.+.-.+
T Consensus         2 klivl~GP-SG~GK~tl~~~L~~~~~~~~   29 (182)
T pfam00625         2 RPIVLSGP-SGVGKSHIKKALLDEYPEKF   29 (182)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHCCCCE
T ss_conf             86999898-99999999999998486673


No 458
>pfam06431 Polyoma_lg_T_C Polyomavirus large T antigen C-terminus.
Probab=73.76  E-value=3.7  Score=20.44  Aligned_cols=26  Identities=31%  Similarity=0.325  Sum_probs=19.4

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             83299983589874799999999998
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      ++|+++.----|+|||+++++|+..+
T Consensus       154 KkRy~lFkGPvNsGKTTlAAAlldLc  179 (417)
T pfam06431       154 KKRYWLFKGPIDSGKTTLAAALLDLC  179 (417)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             41158876786777487999999863


No 459
>PRK06893 DNA replication initiation factor; Validated
Probab=73.63  E-value=5.2  Score=19.47  Aligned_cols=27  Identities=22%  Similarity=0.153  Sum_probs=21.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             2999835898747999999999984048
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      -+||.|. +|+|||...-++|+.+....
T Consensus        41 ~l~i~G~-~gsGKTHLLqa~~~~~~~~~   67 (229)
T PRK06893         41 FFYIWGG-KSSGKSHLLKAVSNHYLLNQ   67 (229)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHHC
T ss_conf             7999899-99988999999999999718


No 460
>PRK08727 hypothetical protein; Validated
Probab=73.56  E-value=5.5  Score=19.33  Aligned_cols=28  Identities=29%  Similarity=0.259  Sum_probs=22.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             29998358987479999999999840486
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      .+|+.|- +|+|||....+.|+.....+.
T Consensus        43 ~lyl~G~-~GsGKTHLl~a~~~~~~~~~~   70 (233)
T PRK08727         43 WLYLSGP-AGTGKTHLALSLCAAAEQAGR   70 (233)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf             8999899-999889999999999982799


No 461
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=73.49  E-value=4.1  Score=20.15  Aligned_cols=30  Identities=30%  Similarity=0.535  Sum_probs=23.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             2999835898747999999999984048612
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKP   34 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP   34 (217)
                      -|+..|- ||+|||.++--|++.+.+=+.+.
T Consensus       111 NILliGP-TG~GKTlla~tLAk~l~vPF~ia  140 (411)
T PRK05342        111 NILLIGP-TGSGKTLLAQTLARILNVPFAIA  140 (411)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             3899899-99778899999999869998998


No 462
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=73.48  E-value=4.2  Score=20.03  Aligned_cols=24  Identities=29%  Similarity=0.392  Sum_probs=19.3

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             9832999835898747999999999
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVH   25 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~   25 (217)
                      |.+.|-+||- .++|||+++-.+..
T Consensus         1 ~~~iIglTG~-igsGKStva~~~~~   24 (201)
T COG0237           1 MMLIIGLTGG-IGSGKSTVAKILAE   24 (201)
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHH
T ss_conf             9649999578-87788999999997


No 463
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=73.35  E-value=6.7  Score=18.78  Aligned_cols=135  Identities=19%  Similarity=0.162  Sum_probs=67.5

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf             99983589874799999999998404861201388738068999998557873114430014510347889998502350
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIID   84 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   84 (217)
                      +.+.| +.|+||++..--|+.          ++|.-+..--...+..+....    ...+.|.-.....-..+..+.+++
T Consensus        10 l~~iG-HVD~GKSTl~GrLly----------~~G~id~~tmeK~~~ea~~~g----K~sf~fawvlD~tkeERerGvTi~   74 (428)
T COG5256          10 LVFIG-HVDAGKSTLVGRLLY----------DLGEIDKRTMEKLEKEAKELG----KESFKFAWVLDKTKEERERGVTID   74 (428)
T ss_pred             EEEEC-CCCCCCHHHHHHHHH----------HHCCCCHHHHHHHHHHHHHCC----CCCEEEEEEECCCHHHHHCCEEEE
T ss_conf             99983-787870344556577----------737979899999999998619----771689998538866786666899


Q ss_pred             HHHHHHHH-HCCEEEEECCCC-CCC-CCCCCCCHHHHHHHHCCCEEEEECCCCC-------HHHHHHHHHHHHHHCCCEE
Q ss_conf             78864223-288799922765-556-6767530899999747944897057765-------0457999999998479907
Q gi|254780487|r   85 PATINPPD-INDSIIIEGIGG-LLV-PLTTEYLFIDLIERWQFPIILCARTSLG-------TINHSLLSLETLRNRNINI  154 (217)
Q Consensus        85 ~~~~~~~~-~~D~viIEGagg-~~~-~~~~~~~~~dla~~l~~~vILV~~~~~g-------~i~~~~l~~~~~~~~g~~i  154 (217)
                      .++..... .+.+.|+...|. .++ ....+.+.||       -.|||++++.+       .-.++.-.+-.++..|++-
T Consensus        75 ~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD-------~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~  147 (428)
T COG5256          75 VAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQAD-------VAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQ  147 (428)
T ss_pred             EEEEEEECCCCEEEEEECCCHHHHHHHHHCCHHHCC-------EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf             777886437705899607846778987631331336-------7999998889831014365875167899998569756


Q ss_pred             EEEEECC
Q ss_conf             9999769
Q gi|254780487|r  155 IGIAFIG  161 (217)
Q Consensus       155 ~GiIlN~  161 (217)
                      .-|.+|+
T Consensus       148 lIVavNK  154 (428)
T COG5256         148 LIVAVNK  154 (428)
T ss_pred             EEEEEEC
T ss_conf             9999971


No 464
>PRK09354 recA recombinase A; Provisional
Probab=73.23  E-value=6.7  Score=18.78  Aligned_cols=90  Identities=17%  Similarity=0.177  Sum_probs=44.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII   83 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (217)
                      -+-|.|. ..+|||++++..++..+..+-.++--.....-|+.+...+ +.+...     +...+|.+-..+     ..+
T Consensus        62 ivEi~G~-esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald~~~a~~l-GVd~d~-----llv~qpd~~Eqa-----l~i  129 (350)
T PRK09354         62 IVEIYGP-ESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKL-GVDIDN-----LLVSQPDTGEQA-----LEI  129 (350)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHC-CCCHHH-----EEEECCCHHHHH-----HHH
T ss_conf             8999889-8777999999999999975994799960002798899984-977157-----178568679999-----999


Q ss_pred             HHHHHHHHHHCCEEEEECCCCCC
Q ss_conf             07886422328879992276555
Q gi|254780487|r   84 DPATINPPDINDSIIIEGIGGLL  106 (217)
Q Consensus        84 ~~~~~~~~~~~D~viIEGagg~~  106 (217)
                      ...+.+ +..-|+++|...+.+.
T Consensus       130 ~e~Lvr-sg~vd~IVvDSVaAL~  151 (350)
T PRK09354        130 ADALVR-SGAVDLIVVDSVAALV  151 (350)
T ss_pred             HHHHHH-CCCCCEEEEECCCCCC
T ss_conf             999985-4884189982533457


No 465
>TIGR00888 guaA_Nterm GMP synthase, N-terminal domain; InterPro: IPR004739   The N-terminal region of GMP synthase 6.3.5.2 from EC is recognised by this signature. GMP synthase catalyzes the synthesis of GMP from XMP , .  ATP + xanthosine 5'-phosphate + L-glutamine + H(2)O = AMP + diphosphate + GMP + L-glutamate ; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006177 GMP biosynthetic process.
Probab=73.20  E-value=5.2  Score=19.47  Aligned_cols=37  Identities=32%  Similarity=0.583  Sum_probs=19.4

Q ss_pred             HHHHHHHCCCEEEEEEECCCC-------CCCHHHHHHHHCCCCEEEE
Q ss_conf             999998479907999976977-------8005999998619989999
Q gi|254780487|r  143 SLETLRNRNINIIGIAFIGDS-------MPKVEETIVKIGRIPHLGR  182 (217)
Q Consensus       143 ~~~~~~~~g~~i~GiIlN~~~-------~~~~~~~le~~~~ipvLG~  182 (217)
                      +++.++..  +-+||||.+-+       .++..+.+-+ .|+||||+
T Consensus        33 ~~eeI~~~--~P~GiILSGGP~sv~~~n~~~~~~~if~-LgVPvLGI   76 (195)
T TIGR00888        33 PLEEIKEK--NPKGIILSGGPASVYAENAPEADEKIFE-LGVPVLGI   76 (195)
T ss_pred             CHHHHHHC--CCCEEEEECCCCCCCCCCCHHHHHHHHH-CCCCEEEE
T ss_conf             77998612--9867997278876467885022488862-79968876


No 466
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=73.20  E-value=3.8  Score=20.34  Aligned_cols=29  Identities=28%  Similarity=0.381  Sum_probs=21.8

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             329998358987479999999999840486
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      +-||.=|+ |.+|||+++..|-..+..-|+
T Consensus         2 ~II~LNG~-SSsGKSsiAraLQ~~l~~p~~   30 (174)
T pfam07931         2 RIILLNGG-SSSGKSSIARALQDILDGPWL   30 (174)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHCCCCEE
T ss_conf             19997489-988879999999984747467


No 467
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain.  They export degradative enzymes by using a type I protein secretion system and  lack an N-terminal signal peptide, but contain a C-terminal secretion signal.  The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP).  For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli.  The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior.  HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels.  The spectrum of transport substra
Probab=73.16  E-value=6.8  Score=18.75  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             32999835898747999999999984
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      +.+.|.|. +|+|||+..-.|+..++
T Consensus        29 ~~vaIvG~-sGsGKSTLl~ll~gl~~   53 (173)
T cd03246          29 ESLAIIGP-SGSGKSTLARLILGLLR   53 (173)
T ss_pred             CEEEEECC-CCCHHHHHHHHHHCCCC
T ss_conf             99999999-99809999999966666


No 468
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=73.10  E-value=6.8  Score=18.74  Aligned_cols=28  Identities=29%  Similarity=0.274  Sum_probs=21.7

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             2999835898747999999999984048612
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWKP   34 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP   34 (217)
                      -|=||||.   |||+++-.+.+.|+..+.|.
T Consensus       102 vIgITGTn---GKTTt~~~l~~iL~~~g~~~  129 (481)
T PRK00139        102 LIGVTGTN---GKTTTAYLIAQILRLLGKKA  129 (481)
T ss_pred             EEEEECCC---CCHHHHHHHHHHHHHCCCCC
T ss_conf             89995899---84349999999998749863


No 469
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=73.07  E-value=4.7  Score=19.77  Aligned_cols=24  Identities=38%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             3299983589874799999999998
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      +.|+|.|. ||+|||..+--+++.|
T Consensus        95 QsIiiSGE-SGaGKTe~~K~il~yL  118 (692)
T cd01385          95 QCIVISGE-SGSGKTESTNFLIHHL  118 (692)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHH
T ss_conf             28999648-9898789999999999


No 470
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=73.06  E-value=6.8  Score=18.74  Aligned_cols=28  Identities=29%  Similarity=0.338  Sum_probs=20.3

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             99983589874799999999998404861
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      +.|.|- +|+|||+.++-+++.....+.+
T Consensus         2 ~li~g~-~g~GKttl~~~~~~~~~~~~~~   29 (165)
T cd01120           2 ILVFGP-TGSGKTTLALQLALNIATKGGK   29 (165)
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHCCCE
T ss_conf             899989-9998999999999998763997


No 471
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=73.04  E-value=4.7  Score=19.73  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=23.8

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             98329998358987479999999999840
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      |+-+|+.+|. .|+|||.++..+++++..
T Consensus        38 ~~HAyLF~Gp-~G~Gk~~~A~~~A~~l~C   65 (395)
T PRK07940         38 MTHAWLFTGP-PGSGRSNAARAFAAALQC   65 (395)
T ss_pred             CCEEEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf             6603763689-987889999999999669


No 472
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=73.03  E-value=6.8  Score=18.74  Aligned_cols=39  Identities=13%  Similarity=0.229  Sum_probs=20.4

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             94489705776504579999999984799079999769778
Q gi|254780487|r  124 FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSM  164 (217)
Q Consensus       124 ~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~  164 (217)
                      -+||.+++  .|+..-+...++.+.+.++++.-||+|+...
T Consensus       440 ~~Vv~i~G--DG~f~m~~qEL~Tavr~~lpv~ivV~NN~~y  478 (574)
T PRK06882        440 GTVVCVTG--DGSIQMNIQELSTAKQYDIPVVIVSLNNRFL  478 (574)
T ss_pred             CCEEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             85899988--2798655999999999689958999979854


No 473
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=72.95  E-value=3.8  Score=20.32  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=19.3

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             999835898747999999999984
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      +++.|- +|+|||.++-.+++.+.
T Consensus         2 vll~Gp-~G~GKT~la~~la~~l~   24 (139)
T pfam07728         2 VLLVGP-PGTGKSELAERLAAALS   24 (139)
T ss_pred             EEEECC-CCCHHHHHHHHHHHHCC
T ss_conf             899989-97569999999999807


No 474
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.81  E-value=2.6  Score=21.39  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=17.4

Q ss_pred             CCCCCHHHHHHHHH-HHHHCCCCC
Q ss_conf             89874799999999-998404861
Q gi|254780487|r   11 DTSVGKTIFASALV-HALNAYYWK   33 (217)
Q Consensus        11 ~t~vGKT~vs~~L~-~~l~~~~~K   33 (217)
                      .||+|||.|.+||+ ..++.+|.+
T Consensus         5 atgsgkt~~ma~lil~~y~kgyr~   28 (812)
T COG3421           5 ATGSGKTLVMAGLILECYKKGYRN   28 (812)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCHHH
T ss_conf             358870059999999999734041


No 475
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=72.79  E-value=3.7  Score=20.44  Aligned_cols=22  Identities=36%  Similarity=0.720  Sum_probs=17.5

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             983299983589874799999999
Q gi|254780487|r    1 MKLRLVIVGTDTSVGKTIFASALV   24 (217)
Q Consensus         1 M~~~i~I~GT~t~vGKT~vs~~L~   24 (217)
                      |+ ++.|.|- +|||||+..-.|+
T Consensus         1 Mk-kVaivGr-pNvGKSTLlN~L~   22 (143)
T pfam10662         1 MK-KIMLIGR-SGCGKTTLTQALN   22 (143)
T ss_pred             CC-EEEEECC-CCCCHHHHHHHHC
T ss_conf             97-5999899-9999999999975


No 476
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=72.65  E-value=3.3  Score=20.70  Aligned_cols=29  Identities=28%  Similarity=0.422  Sum_probs=22.0

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             329998358987479999999999840486
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNAYYW   32 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~   32 (217)
                      .+++|.|.+ ++|||+....|.+..-...+
T Consensus         6 ~kivv~G~~-g~GKTtl~~~l~~~~~~~~~   34 (219)
T COG1100           6 FKIVVLGDG-GVGKTTLLNRLVGDEFPEGY   34 (219)
T ss_pred             EEEEEECCC-CCCHHHHHHHHHCCCCCCCC
T ss_conf             799999999-99889999999647676556


No 477
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462    The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=72.61  E-value=2.2  Score=21.79  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=17.1

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             99835898747999999999984
Q gi|254780487|r    6 VIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         6 ~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      =..|- +|.|||+++..+++.++
T Consensus        25 Hl~GP-aG~GKT~LA~hvA~~r~   46 (265)
T TIGR02640        25 HLRGP-AGTGKTTLAMHVARKRD   46 (265)
T ss_pred             EEECC-CCCCHHHHHHHHHHHCC
T ss_conf             74478-88556899999997368


No 478
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=72.56  E-value=7  Score=18.67  Aligned_cols=167  Identities=13%  Similarity=0.069  Sum_probs=74.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH--CCC-CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             32999835898747999999999984--048-612013887380689999985578731144300145103478899985
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALN--AYY-WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEID   79 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~--~~~-~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (217)
                      .-+||+|- .|.|||.|.+-|+..+.  ..+ ..-+.+|.....  ..++............  ..+..+.+. ..    
T Consensus         2 ~v~~V~G~-pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~--~~l~~~l~~~~~~~~~--~~~~~~~~f-i~----   71 (348)
T pfam09848         2 AVFLVTGG-PGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLV--LVLYEALAGDLKVRKK--KLFRKPTSF-IN----   71 (348)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHH--HHHHHHHHHHCCHHHC--CCCCCCHHH-HC----
T ss_conf             79999777-99389999999999986440268208995786699--9999998604120010--200072523-16----


Q ss_pred             HCCCHHHHHHHHHHCCEEEEECCCCCCCC------CCCCCCHHHHHHHHCCCEEEEECCC---CCHHHHHHHHHHHHHHC
Q ss_conf             02350788642232887999227655566------7675308999997479448970577---65045799999999847
Q gi|254780487|r   80 GVIIDPATINPPDINDSIIIEGIGGLLVP------LTTEYLFIDLIERWQFPIILCARTS---LGTINHSLLSLETLRNR  150 (217)
Q Consensus        80 ~~~i~~~~~~~~~~~D~viIEGagg~~~~------~~~~~~~~dla~~l~~~vILV~~~~---~g~i~~~~l~~~~~~~~  150 (217)
                            ........+|++|+.-|-=+..-      .....-..++.+..+..|.++.+.+   .+.+...-.-.+.+...
T Consensus        72 ------~~~~~~~~~dvvivDEAhRl~~k~~~~~~~~~~~ql~~i~~~a~v~V~~~D~~Q~i~~~e~g~~~~l~~~~~~~  145 (348)
T pfam09848        72 ------NLHKAPPHEDVVIVDEAHRLWTKSDLYFNFSGPNQLDEIMKRAKVVVFFIDEGQEINTGEIGTIEELKKIAAKW  145 (348)
T ss_pred             ------CCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCEECCCCCCCHHHHHHHHHHC
T ss_conf             ------52357986778998317866543365567785799999997528599998798488111376899999999868


Q ss_pred             CCEEEEEEEC-C---CCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf             9907999976-9---778005999998619989999478
Q gi|254780487|r  151 NINIIGIAFI-G---DSMPKVEETIVKIGRIPHLGRLPK  185 (217)
Q Consensus       151 g~~i~GiIlN-~---~~~~~~~~~le~~~~ipvLG~iP~  185 (217)
                      +..+.-+-|. +   ...+...+|+..+.+.......|.
T Consensus       146 ~~~~~~~~L~~qfR~~~s~~~~~wv~~lL~~~~~~~~~~  184 (348)
T pfam09848       146 PAEIYELHLSSQFRSGGSDDYLAWVDALLDNRDIAAKPL  184 (348)
T ss_pred             CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             970479865501045786799999999854776667654


No 479
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=72.46  E-value=5.4  Score=19.39  Aligned_cols=25  Identities=32%  Similarity=0.393  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHH-HHHHC
Q ss_conf             299983589874799999999-99840
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALV-HALNA   29 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~-~~l~~   29 (217)
                      -+++.|. .|+|||++++..+ +.++.
T Consensus        21 iv~~~Gp-AGtGKT~la~~~al~~l~~   46 (205)
T pfam02562        21 IVFGIGP-AGTGKTYLAVAAAVDALKD   46 (205)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHH
T ss_conf             0799899-9860999999999999971


No 480
>pfam08303 tRNA_lig_kinase tRNA ligase kinase domain. This domain is found in fungal tRNA ligases and has kinase activity. tRNA ligases are enzymes required for the splicing of precursor tRNA molecules containing introns.
Probab=72.34  E-value=2.7  Score=21.27  Aligned_cols=18  Identities=22%  Similarity=0.263  Sum_probs=15.6

Q ss_pred             CCCCCHHHHHHHHHHHHH
Q ss_conf             898747999999999984
Q gi|254780487|r   11 DTSVGKTIFASALVHALN   28 (217)
Q Consensus        11 ~t~vGKT~vs~~L~~~l~   28 (217)
                      .-|+|||+|+++|.+.+-
T Consensus         7 tIGCGKTTv~~aL~~LFg   24 (169)
T pfam08303         7 TIGCGKTTVSLTLNNLFP   24 (169)
T ss_pred             CCCCCHHHHHHHHHHHCC
T ss_conf             688559999999999778


No 481
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=72.26  E-value=5.2  Score=19.51  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=25.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEE
Q ss_conf             32999835898747999999999984-04861201
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALN-AYYWKPIQ   36 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~-~~~~KPv~   36 (217)
                      +.++++|- ++.|||.++.|++|-|- -..|-++.
T Consensus        66 rgiLi~Gp-pgTGKTAlA~gIa~eLG~dvPF~~is   99 (450)
T COG1224          66 RGILIVGP-PGTGKTALAMGIARELGEDVPFVAIS   99 (450)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHCCCCCCEEEC
T ss_conf             17999789-99768899999999858999821501


No 482
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=72.19  E-value=3.3  Score=20.68  Aligned_cols=23  Identities=22%  Similarity=0.163  Sum_probs=17.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             89874799999999998404861
Q gi|254780487|r   11 DTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus        11 ~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      .||+|||+|+-.|++.+=..|++
T Consensus        61 ~tGtGKn~vs~liA~~Ly~~G~~   83 (127)
T pfam06309        61 WTGTGKNFVAEIIADNLYRDGLR   83 (127)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99987989999999998754347


No 483
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=72.11  E-value=5.8  Score=19.18  Aligned_cols=107  Identities=13%  Similarity=0.112  Sum_probs=50.3

Q ss_pred             CEEEEECCCCCCCHHHHHHH--HHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             32999835898747999999--9999840486120138873806899999855787311443001451034788999850
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASA--LVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG   80 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~--L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (217)
                      +-++|+|. .|+|||.-+..  +..+++.+  .||-+..+ .-+-..+........      +.....         .+.
T Consensus         1 MI~litG~-pGsGKS~~aV~~~i~~al~~G--R~V~tNI~-gL~~~~~~~~~~~~~------~~~~~~---------~~~   61 (183)
T pfam05707         1 MIYLITGK-PGSGKTLEAVSYHILPALKKG--RKVITNID-GLNLERFPKVFGEDV------RERLED---------IGY   61 (183)
T ss_pred             CEEEEECC-CCCCCCHHHHHHHHHHHHHCC--CEEEECCC-CCCCHHCCCCCCCCC------CCCCCC---------CCC
T ss_conf             97999359-999622999999999998789--98998786-535221012234445------432000---------012


Q ss_pred             CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC------HHHHHHHHCCCEEEEECC
Q ss_conf             2350788642232887999227655566767530------899999747944897057
Q gi|254780487|r   81 VIIDPATINPPDINDSIIIEGIGGLLVPLTTEYL------FIDLIERWQFPIILCART  132 (217)
Q Consensus        81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~------~~dla~~l~~~vILV~~~  132 (217)
                          ...+.......+++|.-+.-++.+-..+..      .....+..+.+++|++-.
T Consensus        62 ----~~~w~~~p~g~liViDE~~~~~~~r~~~~~~~~~i~~l~~HRH~G~DiiliTQ~  115 (183)
T pfam05707        62 ----MDPWRTYPKGALLVIDEAQTWFPSRRGGDKVPPVLDAFSTHRHLGWDIILITQN  115 (183)
T ss_pred             ----CHHHCCCCCCCEEEEECCHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECC
T ss_conf             ----223314999879999897655488777888838999999807788208999189


No 484
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=72.08  E-value=4.2  Score=20.07  Aligned_cols=14  Identities=21%  Similarity=0.152  Sum_probs=6.6

Q ss_pred             HHHHCCEEEEECCC
Q ss_conf             22328879992276
Q gi|254780487|r   90 PPDINDSIIIEGIG  103 (217)
Q Consensus        90 ~~~~~D~viIEGag  103 (217)
                      +....++++++|.+
T Consensus       140 ie~~~siii~G~t~  153 (312)
T COG0630         140 IEARKSIIICGGTA  153 (312)
T ss_pred             HHCCCCEEEECCCC
T ss_conf             97699499988888


No 485
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1.  In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD.  MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=72.06  E-value=3.5  Score=20.55  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             32999835898747999999999984
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      +.+-|.|. ||+|||++.-.|++.++
T Consensus        30 ~~iaIvG~-sGsGKSTLl~ll~gl~~   54 (238)
T cd03249          30 KTVALVGS-SGCGKSTVVSLLERFYD   54 (238)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHCCC
T ss_conf             99999999-99989999999823861


No 486
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.04  E-value=3.1  Score=20.88  Aligned_cols=25  Identities=16%  Similarity=0.357  Sum_probs=19.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             32999835898747999999999984
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      +.+.|+|. ||+|||++.-.|++.++
T Consensus        29 e~i~IvG~-sGsGKSTLl~ll~gl~~   53 (234)
T cd03251          29 ETVALVGP-SGSGKSTLVNLIPRFYD   53 (234)
T ss_pred             CEEEEECC-CCCHHHHHHHHHHCCCC
T ss_conf             99999989-99829999999966766


No 487
>PRK00300 gmk guanylate kinase; Provisional
Probab=71.85  E-value=4.1  Score=20.13  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             2999835898747999999999984048
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      -|.|+|- ||||||++.-.|++.....+
T Consensus         9 livisGP-SG~GK~tl~~~L~~~~p~~~   35 (208)
T PRK00300          9 LIVLSAP-SGAGKSTLVRALLERDPNDL   35 (208)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHCCCCE
T ss_conf             8999999-98899999999997299868


No 488
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=71.65  E-value=5.4  Score=19.39  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             3299983589874799999999998
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      +.|.|.|. ||+|||..+=-+++.|
T Consensus        92 QsIiiSGE-SGAGKTes~K~il~yL  115 (693)
T cd01377          92 QSILITGE-SGAGKTENTKKVIQYL  115 (693)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHH
T ss_conf             06999688-9888899999999999


No 489
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=71.51  E-value=7.2  Score=18.60  Aligned_cols=18  Identities=22%  Similarity=0.346  Sum_probs=10.2

Q ss_pred             CCCCCCHHHHHHHHHHHH
Q ss_conf             589874799999999998
Q gi|254780487|r   10 TDTSVGKTIFASALVHAL   27 (217)
Q Consensus        10 T~t~vGKT~vs~~L~~~l   27 (217)
                      +.+|.|-|-...||+.|+
T Consensus        74 ~t~GPG~~N~~~gl~~A~   91 (572)
T PRK06456         74 ATSGPGVTNLVTGLITAY   91 (572)
T ss_pred             ECCCHHHHHHHHHHHHHH
T ss_conf             803636999999999999


No 490
>PRK13342 recombination factor protein RarA; Reviewed
Probab=71.47  E-value=4.8  Score=19.70  Aligned_cols=29  Identities=24%  Similarity=0.382  Sum_probs=22.5

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             299983589874799999999998404861
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYYWK   33 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K   33 (217)
                      +++..|. +|+|||+++-.|++.++..++.
T Consensus        39 s~Il~GP-PG~GKTTlA~iiA~~~~~~f~~   67 (417)
T PRK13342         39 SMILWGP-PGTGKTTLARIIAGATDAEFEA   67 (417)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHCCCEEE
T ss_conf             5998896-9998999999999986898899


No 491
>PRK08084 DNA replication initiation factor; Provisional
Probab=71.38  E-value=6.6  Score=18.83  Aligned_cols=27  Identities=15%  Similarity=0.192  Sum_probs=21.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             2999835898747999999999984048
Q gi|254780487|r    4 RLVIVGTDTSVGKTIFASALVHALNAYY   31 (217)
Q Consensus         4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~   31 (217)
                      .+||.|. +|+|||...-++|+.+...+
T Consensus        47 ~l~l~G~-~G~GKTHLLqA~~~~~~~~~   73 (235)
T PRK08084         47 YIYLWGR-EGAGRSHLLHAACAELSQRG   73 (235)
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHCCC
T ss_conf             6999899-99888999999999997079


No 492
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752    RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process  ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=71.36  E-value=3.6  Score=20.48  Aligned_cols=28  Identities=25%  Similarity=0.404  Sum_probs=19.0

Q ss_pred             EEEECCCCCCCHHHH-HHHHHHHHHCCCCCC
Q ss_conf             999835898747999-999999984048612
Q gi|254780487|r    5 LVIVGTDTSVGKTIF-ASALVHALNAYYWKP   34 (217)
Q Consensus         5 i~I~GT~t~vGKT~v-s~~L~~~l~~~~~KP   34 (217)
                      +.-||.  |||||.| +--+++..+..+|+|
T Consensus        20 LVLAGA--GSGKT~VI~~KIayLi~~cgY~a   48 (677)
T TIGR01074        20 LVLAGA--GSGKTRVITNKIAYLIQNCGYKA   48 (677)
T ss_pred             EEECCC--CCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             465177--77863578889999875158787


No 493
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD; InterPro: IPR014138   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are related families..
Probab=71.35  E-value=2.6  Score=21.41  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=18.2

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             999835898747999999999984
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      +=+.|- ||||||.+|+++..-|-
T Consensus        15 ~aLvG~-SGSGKS~tc~A~Lg~L~   37 (239)
T TIGR02770        15 LALVGE-SGSGKSLTCLAILGLLP   37 (239)
T ss_pred             EEEECC-CCCCHHHHHHHHHCCCC
T ss_conf             888748-78758999999850358


No 494
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=71.32  E-value=5.1  Score=19.54  Aligned_cols=26  Identities=23%  Similarity=0.519  Sum_probs=21.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             329998358987479999999999840
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      ++||..|- +|+|||+|--.|++.|..
T Consensus         1 m~I~LiG~-mGaGKTtvGr~LA~~L~~   26 (488)
T PRK13951          1 MRIFLVGM-MGSGKSTIGKRISEVLDL   26 (488)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf             94999899-999877999999998397


No 495
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=71.31  E-value=4.9  Score=19.66  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=21.8

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             8329998358987479999999999840
Q gi|254780487|r    2 KLRLVIVGTDTSVGKTIFASALVHALNA   29 (217)
Q Consensus         2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~   29 (217)
                      +-+++.+|. .|+|||+++..++++++.
T Consensus        37 ~HAyLF~GP-~GtGKts~ArifAkaLnC   63 (557)
T PRK07270         37 SHAYLFSGP-RGTGKTSAAKIFAKAMNC   63 (557)
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf             404421089-986899999999999579


No 496
>pfam00931 NB-ARC NB-ARC domain.
Probab=71.18  E-value=4.1  Score=20.12  Aligned_cols=25  Identities=32%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             32999835898747999999999984
Q gi|254780487|r    3 LRLVIVGTDTSVGKTIFASALVHALN   28 (217)
Q Consensus         3 ~~i~I~GT~t~vGKT~vs~~L~~~l~   28 (217)
                      +-|-|.|.+ |+|||+++-.+++-.+
T Consensus        20 ~vI~I~G~g-GiGKTtLA~~v~~~~~   44 (285)
T pfam00931        20 GVVGIVGMG-GVGKTTLAKQIYNDDS   44 (285)
T ss_pred             EEEEEECCC-CCCHHHHHHHHHCCHH
T ss_conf             399988999-5639999999971655


No 497
>PRK06179 short chain dehydrogenase; Provisional
Probab=71.18  E-value=7.5  Score=18.47  Aligned_cols=33  Identities=15%  Similarity=0.332  Sum_probs=22.3

Q ss_pred             CC--CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             98--329998358987479999999999840486120138
Q gi|254780487|r    1 MK--LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG   38 (217)
Q Consensus         1 M~--~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G   38 (217)
                      |+  |..+|||.++|+|+.+     ++.|-..|++-+.++
T Consensus         1 M~~~KvalITGassGIG~a~-----A~~la~~G~~V~~~~   35 (270)
T PRK06179          1 MSNKKVALVTGASSGIGRAT-----AEALARAGYRVFGTS   35 (270)
T ss_pred             CCCCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEE
T ss_conf             98995899907246999999-----999998799999996


No 498
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains.  Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins.  The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases.  The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences.  In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=71.16  E-value=4.4  Score=19.93  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=18.9

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             99983589874799999999998
Q gi|254780487|r    5 LVIVGTDTSVGKTIFASALVHAL   27 (217)
Q Consensus         5 i~I~GT~t~vGKT~vs~~L~~~l   27 (217)
                      =||.|.+ |+||+++.++++=+|
T Consensus        26 N~IiGpN-GSGKSsIv~AI~lgL   47 (213)
T cd03277          26 NMIIGPN-GSGKSSIVCAICLGL   47 (213)
T ss_pred             EEEECCC-CCCHHHHHHHHHHHH
T ss_conf             7998899-887899999999881


No 499
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=71.14  E-value=3.7  Score=20.44  Aligned_cols=25  Identities=28%  Similarity=-0.016  Sum_probs=21.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf             8987479999999999840486120
Q gi|254780487|r   11 DTSVGKTIFASALVHALNAYYWKPI   35 (217)
Q Consensus        11 ~t~vGKT~vs~~L~~~l~~~~~KPv   35 (217)
                      -.|.|||-++..|++.|+..|+||.
T Consensus        59 vGGtGKTP~v~~la~~l~~~g~~~~   83 (334)
T PRK00652         59 VGGNGKTPVVIWLAEQLQARGVKVG   83 (334)
T ss_pred             ECCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             7887779999999999997699367


No 500
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=70.89  E-value=7.7  Score=18.43  Aligned_cols=122  Identities=10%  Similarity=0.043  Sum_probs=0.0

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHC------CCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             98358987479999999999840------486120138873806899999855787311443001451034788999850
Q gi|254780487|r    7 IVGTDTSVGKTIFASALVHALNA------YYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG   80 (217)
Q Consensus         7 I~GT~t~vGKT~vs~~L~~~l~~------~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (217)
                      |+|. +|+|||.+++-|+.....      ..-+-+=-.....-++..+.++.........-..-..............+.
T Consensus        24 i~G~-~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~~Rl~qia~~~~~~~~~~l~~i~~~~~~~~~~l~~~  102 (235)
T cd01123          24 IFGE-FGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYNSDHQLQL  102 (235)
T ss_pred             EECC-CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCEEEECCCCHHHHHHH
T ss_conf             9999-998499999999999842475367896299995367758899999999713472454225479637999999999


Q ss_pred             CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCC---------------CCHHHHHHHHCCCEEEE
Q ss_conf             23507886422328879992276555667675---------------30899999747944897
Q gi|254780487|r   81 VIIDPATINPPDINDSIIIEGIGGLLVPLTTE---------------YLFIDLIERWQFPIILC  129 (217)
Q Consensus        81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~---------------~~~~dla~~l~~~vILV  129 (217)
                      ................++|+..-.++.....+               .....+|+..+++|+++
T Consensus       103 l~~l~~~l~~~~~v~LvVIDSia~l~r~e~~~~~~~~~r~~~l~~~~~~L~~lA~~~~~aVvvt  166 (235)
T cd01123         103 LEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVIT  166 (235)
T ss_pred             HHHHHHHHHCCCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             9999998730377239999610455566644886447899999999999999999809799996


Done!