Query gi|254780487|ref|YP_003064900.1| dithiobiotin synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 217
No_of_seqs 119 out of 2137
Neff 8.3
Searched_HMMs 39220
Date Sun May 29 17:18:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780487.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00090 bioD dithiobiotin syn 100.0 0 0 317.6 21.7 204 4-211 1-222 (223)
2 PRK12374 putative dithiobiotin 100.0 0 0 309.5 18.8 205 1-209 1-222 (231)
3 COG0132 BioD Dethiobiotin synt 100.0 1.4E-45 0 306.8 18.9 192 1-192 1-210 (223)
4 TIGR00347 bioD dethiobiotin sy 100.0 7.9E-39 2E-43 262.7 13.0 155 6-160 1-187 (187)
5 cd03109 DTBS Dethiobiotin synt 100.0 3.1E-33 8E-38 227.6 12.8 124 5-184 1-134 (134)
6 PRK01077 cobyrinic acid a,c-di 100.0 2.3E-31 6E-36 215.9 18.9 196 1-213 1-228 (451)
7 COG1797 CobB Cobyrinic acid a, 100.0 5E-31 1.3E-35 213.8 19.2 196 3-213 1-226 (451)
8 TIGR00379 cobB cobyrinic acid 100.0 5.6E-31 1.4E-35 213.5 15.5 196 4-214 1-233 (464)
9 PRK13896 cobyrinic acid a,c-di 100.0 6.1E-30 1.6E-34 207.0 20.3 193 1-213 1-218 (432)
10 TIGR00313 cobQ cobyric acid sy 100.0 7.5E-31 1.9E-35 212.7 14.6 185 5-189 1-227 (502)
11 PRK00784 cobyric acid synthase 100.0 2.1E-29 5.3E-34 203.7 17.3 190 1-190 2-232 (492)
12 PRK05632 phosphate acetyltrans 100.0 1.3E-26 3.3E-31 186.2 16.8 201 2-205 1-230 (702)
13 COG1492 CobQ Cobyric acid synt 99.9 1.6E-22 4.1E-27 160.5 10.7 189 1-190 1-231 (486)
14 COG0857 Pta BioD-like N-termin 99.8 1.4E-17 3.7E-22 129.5 11.9 192 1-193 1-210 (354)
15 PRK06278 cobyrinic acid a,c-di 99.6 3.4E-15 8.7E-20 114.6 9.8 165 2-182 244-422 (482)
16 pfam01656 CbiA CobQ/CobB/MinD/ 99.4 6.1E-12 1.6E-16 94.2 10.6 179 5-190 1-211 (212)
17 TIGR01969 minD_arch cell divis 99.3 6.2E-12 1.6E-16 94.2 8.0 176 4-190 2-202 (258)
18 CHL00175 minD septum-site dete 99.1 7.8E-10 2E-14 81.1 11.0 181 1-189 12-220 (279)
19 PRK13233 nifH nitrogenase redu 99.1 3.8E-09 9.8E-14 76.7 13.4 181 1-189 1-217 (275)
20 cd02117 NifH_like This family 99.1 1.9E-09 4.8E-14 78.6 11.4 174 3-186 1-212 (212)
21 cd03110 Fer4_NifH_child This p 99.1 2.2E-09 5.5E-14 78.3 11.1 160 4-184 1-179 (179)
22 PRK13185 chlL protochlorophyll 99.1 1.6E-09 4.1E-14 79.1 10.1 178 1-189 1-211 (269)
23 cd02032 Bchl_like This family 99.0 3.3E-09 8.4E-14 77.1 10.7 175 4-189 2-209 (267)
24 PRK13231 nitrogenase reductase 99.0 8.6E-09 2.2E-13 74.5 12.4 178 1-189 1-208 (264)
25 cd02037 MRP-like MRP (Multiple 99.0 8E-08 2E-12 68.4 15.0 153 5-186 2-168 (169)
26 TIGR01007 eps_fam capsular exo 98.9 1.1E-08 2.8E-13 73.9 9.8 156 3-164 20-195 (207)
27 cd02036 MinD Bacterial cell di 98.9 1.9E-08 4.9E-13 72.3 10.6 146 5-187 2-154 (179)
28 PRK13235 nifH nitrogenase redu 98.9 4.4E-08 1.1E-12 70.1 12.4 180 1-189 1-216 (274)
29 PRK13232 nifH nitrogenase redu 98.9 4.5E-08 1.2E-12 70.0 12.2 182 3-189 2-214 (273)
30 PRK11670 putative ATPase; Prov 98.9 1.8E-08 4.7E-13 72.4 10.2 174 2-188 107-318 (369)
31 PRK09841 cryptic autophosphory 98.9 1.3E-07 3.3E-12 67.2 14.3 157 2-164 531-705 (726)
32 PRK13234 nifH nitrogenase redu 98.9 2.8E-07 7.1E-12 65.0 15.1 175 3-187 5-216 (293)
33 PRK11519 tyrosine kinase; Prov 98.8 2.7E-07 7E-12 65.1 13.9 153 3-163 527-699 (720)
34 CHL00072 chlL photochlorophyll 98.8 8.9E-08 2.3E-12 68.1 10.9 175 4-189 2-209 (271)
35 COG0541 Ffh Signal recognition 98.8 2.1E-06 5.3E-11 59.5 17.1 177 4-195 102-290 (451)
36 TIGR03029 EpsG chain length de 98.8 2.6E-07 6.5E-12 65.3 12.3 152 3-161 104-274 (274)
37 COG0455 flhG Antiactivator of 98.8 2.1E-07 5.5E-12 65.7 11.9 180 1-187 1-206 (262)
38 PRK00771 signal recognition pa 98.8 1.4E-06 3.6E-11 60.6 16.1 176 4-195 99-285 (433)
39 PRK13236 nitrogenase reductase 98.8 6.4E-07 1.6E-11 62.8 14.2 176 3-188 7-219 (295)
40 COG0489 Mrp ATPases involved i 98.8 2.8E-07 7.1E-12 65.1 12.3 174 3-187 58-259 (265)
41 PRK10818 cell division inhibit 98.7 1.1E-07 2.8E-12 67.5 9.8 181 1-189 1-217 (270)
42 TIGR00959 ffh signal recogniti 98.7 1.2E-06 3E-11 61.1 14.8 195 4-214 104-330 (439)
43 TIGR01968 minD_bact septum sit 98.7 1.2E-07 3E-12 67.4 9.3 179 2-189 1-216 (272)
44 PRK10867 signal recognition pa 98.7 4.9E-06 1.2E-10 57.2 17.6 196 4-213 102-322 (453)
45 TIGR01281 DPOR_bchL light-inde 98.7 1.4E-07 3.6E-12 66.9 9.5 181 4-193 2-219 (275)
46 pfam07755 DUF1611 Protein of u 98.7 1.3E-06 3.2E-11 60.9 13.6 162 2-186 113-295 (302)
47 PRK13230 nitrogenase reductase 98.7 3.9E-07 1E-11 64.1 10.8 180 1-189 1-227 (292)
48 cd02040 NifH NifH gene encodes 98.7 2.3E-06 6E-11 59.2 14.3 183 1-189 1-215 (270)
49 cd00550 ArsA_ATPase Oxyanion-t 98.6 2.8E-06 7.1E-11 58.8 14.6 178 3-187 1-240 (254)
50 COG2894 MinD Septum formation 98.6 1.4E-07 3.5E-12 67.0 6.3 176 1-188 1-215 (272)
51 pfam00142 Fer4_NifH 4Fe-4S iro 98.6 2.1E-06 5.4E-11 59.5 12.3 181 4-189 2-214 (269)
52 cd02033 BchX Chlorophyllide re 98.6 9.7E-07 2.5E-11 61.6 10.4 181 3-193 32-248 (329)
53 COG1149 MinD superfamily P-loo 98.5 1.5E-06 3.8E-11 60.5 10.4 92 89-189 159-252 (284)
54 PRK10416 cell division protein 98.5 1.9E-05 4.8E-10 53.6 15.8 169 4-190 297-483 (499)
55 TIGR03018 pepcterm_TyrKin exop 98.5 5.3E-06 1.4E-10 57.0 12.7 149 3-160 36-207 (207)
56 TIGR02016 BchX chlorophyllide 98.5 6.5E-06 1.7E-10 56.5 12.5 181 4-190 2-222 (355)
57 COG3367 Uncharacterized conser 98.4 6.7E-06 1.7E-10 56.4 11.5 161 2-185 148-326 (339)
58 pfam02374 ArsA_ATPase Anion-tr 98.4 6.8E-05 1.7E-09 50.1 16.2 74 124-198 207-299 (304)
59 PRK06731 flhF flagellar biosyn 98.4 8.1E-05 2.1E-09 49.6 16.5 174 4-197 77-265 (270)
60 cd02035 ArsA ArsA ATPase funct 98.4 7.3E-06 1.9E-10 56.1 10.8 71 91-164 111-182 (217)
61 TIGR03371 cellulose_yhjQ cellu 98.4 8.5E-06 2.2E-10 55.8 11.0 179 1-189 1-211 (246)
62 cd02038 FleN-like FleN is a me 98.3 6.1E-06 1.6E-10 56.6 9.9 127 5-184 2-139 (139)
63 COG3640 CooC CO dehydrogenase 98.3 4.3E-05 1.1E-09 51.4 14.1 90 93-189 133-223 (255)
64 KOG3022 consensus 98.3 1.2E-05 3E-10 54.9 10.5 181 3-187 48-259 (300)
65 COG1348 NifH Nitrogenase subun 98.2 0.00019 4.7E-09 47.3 14.7 177 3-189 2-216 (278)
66 KOG0780 consensus 98.0 9.4E-05 2.4E-09 49.2 10.4 175 4-190 103-283 (483)
67 cd03115 SRP The signal recogni 98.0 0.00051 1.3E-08 44.6 13.8 160 4-180 2-170 (173)
68 TIGR01425 SRP54_euk signal rec 98.0 4.9E-05 1.2E-09 51.0 8.3 170 4-189 123-302 (453)
69 PRK12726 flagellar biosynthesi 98.0 0.00099 2.5E-08 42.8 14.8 158 3-180 207-373 (407)
70 PHA02518 ParA-like protein; Pr 97.9 0.00027 6.9E-09 46.3 11.3 158 3-185 1-171 (211)
71 pfam00448 SRP54 SRP54-type pro 97.9 0.00083 2.1E-08 43.3 13.7 159 4-180 3-171 (196)
72 COG2403 Predicted GTPase [Gene 97.9 3.4E-05 8.6E-10 52.0 5.9 96 4-110 128-241 (449)
73 TIGR00064 ftsY signal recognit 97.9 0.00022 5.5E-09 46.9 9.9 172 4-189 84-271 (284)
74 pfam06564 YhjQ YhjQ protein. T 97.9 0.00016 4E-09 47.8 8.9 175 1-189 1-205 (244)
75 COG0552 FtsY Signal recognitio 97.8 0.00028 7.1E-09 46.2 10.0 171 4-191 141-328 (340)
76 cd01983 Fer4_NifH The Fer4_Nif 97.8 9.2E-05 2.3E-09 49.3 7.4 96 4-160 1-99 (99)
77 PRK12723 flagellar biosynthesi 97.7 0.003 7.5E-08 39.8 13.2 172 4-198 176-367 (388)
78 TIGR01287 nifH nitrogenase iro 97.6 0.0016 4.1E-08 41.5 11.0 176 3-189 1-217 (278)
79 PRK05703 flhF flagellar biosyn 97.5 0.00059 1.5E-08 44.2 8.1 157 3-180 211-376 (412)
80 pfam07015 VirC1 VirC1 protein. 97.5 0.0027 6.8E-08 40.1 11.4 139 1-164 1-152 (231)
81 PRK13849 putative crown gall t 97.5 0.004 1E-07 39.0 12.0 156 1-180 1-172 (231)
82 TIGR00750 lao LAO/AO transport 97.5 0.00057 1.4E-08 44.3 7.6 119 3-131 39-167 (333)
83 PRK10751 molybdopterin-guanine 97.5 0.00053 1.3E-08 44.5 7.1 157 1-204 1-167 (170)
84 cd03116 MobB Molybdenum is an 97.5 0.00049 1.3E-08 44.7 6.9 126 3-162 2-136 (159)
85 PRK10037 cell division protein 97.4 0.0046 1.2E-07 38.6 11.3 32 1-33 1-32 (250)
86 TIGR00176 mobB molybdopterin-g 97.4 0.00031 8E-09 45.9 4.9 93 5-103 2-106 (165)
87 COG0003 ArsA Predicted ATPase 97.4 0.0076 1.9E-07 37.3 11.8 42 123-164 207-248 (322)
88 COG1419 FlhF Flagellar GTP-bin 97.3 0.0037 9.3E-08 39.2 10.1 156 4-180 205-369 (407)
89 PRK12724 flagellar biosynthesi 97.3 0.005 1.3E-07 38.4 10.7 182 4-211 225-424 (432)
90 PRK06995 flhF flagellar biosyn 97.2 0.002 5E-08 40.9 7.8 154 5-180 179-342 (404)
91 COG1763 MobB Molybdopterin-gua 97.1 0.001 2.7E-08 42.7 4.9 94 1-103 1-102 (161)
92 COG1192 Soj ATPases involved i 97.0 0.0043 1.1E-07 38.8 7.9 35 1-35 1-36 (259)
93 COG1618 Predicted nucleotide k 97.0 0.0016 4E-08 41.5 5.6 32 1-33 4-35 (179)
94 PRK11889 flhF flagellar biosyn 96.9 0.013 3.2E-07 35.9 9.4 156 5-180 244-408 (436)
95 cd02042 ParA ParA and ParB of 96.9 0.0038 9.6E-08 39.2 6.6 97 5-160 2-104 (104)
96 pfam09140 MipZ ATPase MipZ. Mi 96.9 0.0057 1.5E-07 38.0 7.4 97 5-105 3-110 (261)
97 PRK05380 pyrG CTP synthetase; 96.7 0.052 1.3E-06 32.0 14.3 181 1-185 1-237 (534)
98 PRK13886 conjugal transfer pro 96.6 0.059 1.5E-06 31.7 12.3 147 1-161 1-154 (241)
99 PRK04220 2-phosphoglycerate ki 96.6 0.0058 1.5E-07 38.0 5.5 24 4-28 94-117 (306)
100 TIGR03499 FlhF flagellar biosy 96.4 0.0049 1.3E-07 38.4 4.5 72 126-203 197-272 (282)
101 COG0378 HypB Ni2+-binding GTPa 96.4 0.012 3E-07 36.1 6.3 99 4-112 15-115 (202)
102 COG0572 Udk Uridine kinase [Nu 96.4 0.028 7.2E-07 33.7 8.2 144 5-172 11-177 (218)
103 PRK12727 flagellar biosynthesi 96.4 0.017 4.4E-07 35.0 6.9 157 5-181 351-514 (557)
104 pfam00485 PRK Phosphoribulokin 96.3 0.024 6.1E-07 34.1 7.5 119 5-132 2-139 (196)
105 cd03114 ArgK-like The function 96.1 0.099 2.5E-06 30.3 9.8 114 5-135 2-125 (148)
106 cd02028 UMPK_like Uridine mono 96.1 0.015 3.9E-07 35.3 5.4 30 5-35 2-31 (179)
107 KOG2749 consensus 96.0 0.027 7E-07 33.8 6.4 129 2-133 103-249 (415)
108 TIGR00455 apsK adenylylsulfate 95.9 0.0035 8.9E-08 39.4 1.7 31 4-35 21-51 (187)
109 PRK00091 miaA tRNA delta(2)-is 95.9 0.0065 1.7E-07 37.7 2.9 25 3-28 5-29 (304)
110 COG4108 PrfC Peptide chain rel 95.9 0.078 2E-06 30.9 8.5 142 5-177 14-163 (528)
111 cd03111 CpaE_like This protein 95.9 0.057 1.5E-06 31.8 7.7 101 5-161 2-106 (106)
112 COG1703 ArgK Putative periplas 95.9 0.14 3.6E-06 29.3 16.6 116 4-136 53-178 (323)
113 TIGR01087 murD UDP-N-acetylmur 95.8 0.012 3.1E-07 36.0 3.9 35 2-39 110-144 (476)
114 PRK12338 hypothetical protein; 95.8 0.037 9.5E-07 32.9 6.3 28 1-29 1-30 (320)
115 PRK04040 adenylate kinase; Pro 95.8 0.16 4E-06 29.0 9.5 118 1-135 1-122 (189)
116 TIGR00763 lon ATP-dependent pr 95.7 0.024 6.2E-07 34.1 5.2 37 4-42 452-488 (941)
117 PRK09825 idnK D-gluconate kina 95.6 0.025 6.3E-07 34.1 4.9 59 1-64 1-60 (176)
118 cd02026 PRK Phosphoribulokinas 95.6 0.087 2.2E-06 30.6 7.7 115 5-133 2-127 (273)
119 TIGR01085 murE UDP-N-acetylmur 95.6 0.01 2.5E-07 36.5 2.8 27 4-33 90-116 (494)
120 TIGR02173 cyt_kin_arch cytidyl 95.6 0.015 3.9E-07 35.3 3.8 101 4-131 2-108 (173)
121 COG4028 Predicted P-loop ATPas 95.6 0.0089 2.3E-07 36.8 2.5 60 4-64 2-78 (271)
122 PRK02472 murD UDP-N-acetylmura 95.4 0.033 8.3E-07 33.3 5.1 34 3-39 113-146 (450)
123 COG1341 Predicted GTPase or GT 95.4 0.051 1.3E-06 32.1 6.0 126 4-131 75-208 (398)
124 TIGR01420 pilT_fam twitching m 95.4 0.013 3.4E-07 35.7 3.1 29 4-33 129-157 (350)
125 PRK09270 frcK putative fructos 95.4 0.045 1.1E-06 32.4 5.7 117 5-131 37-172 (230)
126 PTZ00301 uridine kinase; Provi 95.4 0.036 9.1E-07 33.0 5.2 164 1-187 1-190 (210)
127 PRK01710 murD UDP-N-acetylmura 95.4 0.078 2E-06 30.9 6.8 34 3-39 118-151 (458)
128 cd02023 UMPK Uridine monophosp 95.3 0.044 1.1E-06 32.5 5.4 24 5-29 2-25 (198)
129 PRK03839 putative kinase; Prov 95.3 0.02 5.2E-07 34.5 3.6 24 3-27 1-24 (180)
130 cd01121 Sms Sms (bacterial rad 95.2 0.24 6.1E-06 27.9 11.2 145 4-163 83-250 (372)
131 PRK02705 murD UDP-N-acetylmura 95.2 0.12 2.9E-06 29.8 7.2 34 3-39 110-143 (459)
132 COG2019 AdkA Archaeal adenylat 95.2 0.23 5.9E-06 27.9 8.7 117 1-135 1-121 (189)
133 PRK07429 phosphoribulokinase; 95.1 0.15 3.7E-06 29.2 7.6 117 1-131 4-134 (331)
134 cd02025 PanK Pantothenate kina 95.1 0.046 1.2E-06 32.4 4.9 117 5-130 2-137 (220)
135 PRK04663 murD UDP-N-acetylmura 95.0 0.098 2.5E-06 30.3 6.5 34 3-39 109-142 (438)
136 PRK04308 murD UDP-N-acetylmura 95.0 0.032 8.2E-07 33.3 3.9 34 3-39 111-144 (445)
137 PRK13768 GTPase; Provisional 95.0 0.29 7.3E-06 27.4 10.8 146 1-161 1-171 (253)
138 pfam03308 ArgK ArgK protein. T 94.9 0.3 7.5E-06 27.3 18.0 113 3-132 30-153 (267)
139 PRK02006 murD UDP-N-acetylmura 94.9 0.19 4.8E-06 28.5 7.7 34 3-39 123-156 (501)
140 PRK11823 DNA repair protein Ra 94.8 0.31 7.8E-06 27.2 11.4 144 4-163 91-257 (454)
141 PRK03369 murD UDP-N-acetylmura 94.8 0.039 1E-06 32.8 4.0 34 3-39 118-151 (487)
142 PRK00141 murD UDP-N-acetylmura 94.8 0.041 1E-06 32.7 4.0 32 5-39 126-157 (476)
143 PRK05480 uridine kinase; Provi 94.8 0.043 1.1E-06 32.5 4.1 28 1-29 3-32 (209)
144 TIGR01005 eps_transp_fam exopo 94.8 0.32 8.2E-06 27.1 9.6 154 4-167 563-742 (778)
145 PRK05632 phosphate acetyltrans 94.7 0.33 8.5E-06 26.9 10.1 103 107-212 212-367 (702)
146 PRK13695 putative NTPase; Prov 94.7 0.048 1.2E-06 32.2 4.1 28 1-29 2-29 (174)
147 PRK05800 cobU adenosylcobinami 94.7 0.23 6E-06 27.9 7.7 130 2-148 1-142 (170)
148 TIGR00073 hypB hydrogenase acc 94.7 0.091 2.3E-06 30.5 5.5 108 11-133 42-151 (225)
149 PRK01438 murD UDP-N-acetylmura 94.6 0.041 1E-06 32.7 3.6 32 5-39 125-156 (481)
150 TIGR00235 udk uridine kinase; 94.6 0.032 8.1E-07 33.4 3.0 159 5-186 13-201 (220)
151 COG0771 MurD UDP-N-acetylmuram 94.5 0.086 2.2E-06 30.6 5.1 35 2-39 110-144 (448)
152 PRK08006 replicative DNA helic 94.5 0.37 9.5E-06 26.7 9.8 25 3-27 224-248 (471)
153 PRK03806 murD UDP-N-acetylmura 94.5 0.21 5.2E-06 28.3 7.0 34 3-39 106-139 (438)
154 pfam06414 Zeta_toxin Zeta toxi 94.4 0.24 6E-06 27.9 7.2 32 3-35 13-44 (191)
155 COG1936 Predicted nucleotide k 94.4 0.033 8.4E-07 33.3 2.8 21 3-24 1-21 (180)
156 PRK06835 DNA replication prote 94.4 0.39 9.9E-06 26.5 8.5 111 3-141 184-297 (330)
157 PRK10463 hydrogenase nickel in 94.4 0.13 3.3E-06 29.5 5.8 92 10-113 111-204 (290)
158 TIGR01313 therm_gnt_kin carboh 94.4 0.077 2E-06 30.9 4.6 60 5-65 1-61 (175)
159 PRK03731 aroL shikimate kinase 94.3 0.047 1.2E-06 32.3 3.4 31 1-32 1-31 (172)
160 PRK01368 murD UDP-N-acetylmura 94.3 0.056 1.4E-06 31.8 3.8 34 3-39 105-138 (450)
161 PRK08233 hypothetical protein; 94.3 0.24 6.1E-06 27.9 7.0 24 4-28 5-28 (182)
162 pfam03029 ATP_bind_1 Conserved 94.3 0.42 1.1E-05 26.3 9.0 144 7-162 1-164 (234)
163 PRK13869 plasmid-partitioning 94.2 0.36 9.1E-06 26.8 7.7 32 3-34 122-153 (405)
164 PRK08118 topology modulation p 94.1 0.062 1.6E-06 31.5 3.7 27 1-29 1-27 (167)
165 PRK08840 replicative DNA helic 94.1 0.44 1.1E-05 26.2 9.4 33 4-36 218-250 (464)
166 pfam03205 MobB Molybdopterin g 94.1 0.075 1.9E-06 31.0 4.1 31 4-35 2-32 (122)
167 COG1072 CoaA Panthothenate kin 94.1 0.15 3.8E-06 29.2 5.6 30 4-34 84-113 (283)
168 PRK00421 murC UDP-N-acetylmura 94.1 0.052 1.3E-06 32.0 3.2 29 3-34 109-137 (459)
169 PRK01390 murD UDP-N-acetylmura 94.0 0.084 2.1E-06 30.7 4.2 33 3-38 115-147 (457)
170 PRK08694 consensus 94.0 0.41 1.1E-05 26.4 7.8 33 4-36 219-251 (468)
171 PRK04690 murD UDP-N-acetylmura 94.0 0.088 2.2E-06 30.6 4.2 34 3-39 116-149 (468)
172 COG0324 MiaA tRNA delta(2)-iso 93.9 0.34 8.7E-06 26.9 7.2 27 2-29 3-29 (308)
173 TIGR01082 murC UDP-N-acetylmur 93.8 0.067 1.7E-06 31.3 3.3 29 3-34 109-137 (491)
174 PRK00889 adenylylsulfate kinas 93.8 0.11 2.8E-06 30.0 4.4 34 1-35 1-36 (175)
175 TIGR03600 phage_DnaB phage rep 93.7 0.53 1.4E-05 25.7 8.7 23 4-26 195-217 (421)
176 PRK09361 radB DNA repair and r 93.7 0.54 1.4E-05 25.6 11.6 120 4-131 25-159 (224)
177 cd02034 CooC The accessory pro 93.6 0.089 2.3E-06 30.6 3.7 31 4-36 1-31 (116)
178 pfam02283 CobU Cobinamide kina 93.6 0.17 4.3E-06 28.8 5.1 129 5-151 1-142 (166)
179 PRK07263 consensus 93.6 0.56 1.4E-05 25.5 7.9 24 4-27 204-227 (453)
180 PRK00683 murD UDP-N-acetylmura 93.5 0.07 1.8E-06 31.2 3.0 34 3-39 103-136 (418)
181 PRK03803 murD UDP-N-acetylmura 93.5 0.1 2.6E-06 30.2 3.8 34 3-39 110-143 (448)
182 PRK12339 2-phosphoglycerate ki 93.4 0.35 9E-06 26.8 6.5 27 1-28 1-28 (197)
183 PRK06761 hypothetical protein; 93.3 0.11 2.9E-06 29.9 3.8 31 1-32 1-31 (281)
184 TIGR02759 TraD_Ftype type IV c 93.3 0.1 2.6E-06 30.2 3.5 32 3-35 209-240 (613)
185 cd01122 GP4d_helicase GP4d_hel 93.3 0.63 1.6E-05 25.2 9.4 30 4-33 31-61 (271)
186 cd01884 EF_Tu EF-Tu subfamily. 93.3 0.62 1.6E-05 25.3 7.6 64 93-163 64-129 (195)
187 PRK06217 hypothetical protein; 93.2 0.1 2.6E-06 30.2 3.5 27 3-30 2-28 (185)
188 KOG2004 consensus 93.2 0.33 8.5E-06 27.0 6.1 30 3-33 439-468 (906)
189 PRK06904 replicative DNA helic 93.1 0.67 1.7E-05 25.1 10.0 33 4-36 222-254 (472)
190 cd01124 KaiC KaiC is a circadi 93.1 0.61 1.6E-05 25.3 7.3 124 5-132 2-139 (187)
191 PRK08116 hypothetical protein; 93.0 0.68 1.7E-05 25.0 8.1 110 3-139 109-221 (262)
192 TIGR01448 recD_rel helicase, R 93.0 0.48 1.2E-05 26.0 6.7 25 3-27 365-389 (769)
193 PRK05541 adenylylsulfate kinas 93.0 0.14 3.5E-06 29.3 3.9 31 4-35 9-39 (176)
194 pfam10609 ParA ParA/MinD ATPas 93.0 0.52 1.3E-05 25.7 6.9 61 95-161 2-63 (81)
195 cd01394 radB RadB. The archaea 93.0 0.7 1.8E-05 24.9 10.0 119 5-131 22-156 (218)
196 PRK13700 conjugal transfer pro 92.8 0.17 4.2E-06 28.9 4.1 32 3-35 186-217 (732)
197 PRK11545 gntK gluconate kinase 92.8 0.2 5.2E-06 28.3 4.5 56 4-64 10-65 (177)
198 PRK05748 replicative DNA helic 92.7 0.76 1.9E-05 24.7 9.0 24 4-27 204-227 (448)
199 pfam03266 DUF265 Protein of un 92.7 0.15 3.9E-06 29.1 3.8 28 4-32 1-28 (168)
200 COG2805 PilT Tfp pilus assembl 92.6 0.32 8.3E-06 27.0 5.3 32 4-36 127-158 (353)
201 COG1102 Cmk Cytidylate kinase 92.5 0.36 9.2E-06 26.7 5.6 99 4-126 2-101 (179)
202 PRK09183 transposase/IS protei 92.5 0.16 4.2E-06 28.9 3.8 132 4-164 103-241 (258)
203 pfam08245 Mur_ligase_M Mur lig 92.5 0.81 2.1E-05 24.5 11.9 29 7-38 1-29 (188)
204 TIGR02397 dnaX_nterm DNA polym 92.4 0.11 2.8E-06 30.0 2.8 27 3-30 37-63 (363)
205 PRK07261 topology modulation p 92.4 0.16 4.1E-06 29.0 3.5 26 3-29 1-26 (171)
206 PRK09165 replicative DNA helic 92.3 0.59 1.5E-05 25.4 6.4 22 4-25 206-227 (484)
207 COG0773 MurC UDP-N-acetylmuram 92.3 0.14 3.6E-06 29.3 3.2 29 3-34 108-136 (459)
208 COG0529 CysC Adenylylsulfate k 92.2 0.24 6.2E-06 27.8 4.4 30 4-34 25-54 (197)
209 TIGR00174 miaA tRNA delta(2)-i 92.1 0.12 3E-06 29.8 2.6 26 4-30 1-26 (307)
210 PRK09435 arginine/ornithine tr 92.0 0.91 2.3E-05 24.2 18.3 113 3-132 50-173 (325)
211 TIGR02768 TraA_Ti Ti-type conj 92.0 0.69 1.8E-05 25.0 6.5 107 7-138 435-545 (888)
212 TIGR02928 TIGR02928 orc1/cdc6 92.0 0.18 4.5E-06 28.7 3.4 26 3-29 44-69 (383)
213 cd00984 DnaB_C DnaB helicase C 91.9 0.94 2.4E-05 24.1 9.3 30 4-33 14-44 (242)
214 PRK03846 adenylylsulfate kinas 91.9 0.26 6.7E-06 27.6 4.2 32 3-35 25-56 (198)
215 TIGR00503 prfC peptide chain r 91.9 0.5 1.3E-05 25.8 5.6 124 4-158 12-139 (530)
216 PRK10846 bifunctional folylpol 91.9 0.95 2.4E-05 24.1 7.0 28 3-33 50-77 (416)
217 pfam06418 CTP_synth_N CTP synt 91.8 0.97 2.5E-05 24.1 14.1 182 2-185 1-237 (275)
218 cd02029 PRK_like Phosphoribulo 91.8 0.97 2.5E-05 24.1 8.3 31 5-36 2-32 (277)
219 pfam01695 IstB IstB-like ATP b 91.8 0.25 6.3E-06 27.8 3.9 29 4-33 49-77 (178)
220 TIGR03007 pepcterm_ChnLen poly 91.7 0.38 9.7E-06 26.6 4.9 27 166-192 455-481 (510)
221 pfam01583 APS_kinase Adenylyls 91.7 0.25 6.4E-06 27.7 3.9 31 4-35 4-34 (157)
222 PRK06526 transposase; Provisio 91.7 0.23 5.9E-06 27.9 3.8 131 4-164 100-236 (254)
223 cd02021 GntK Gluconate kinase 91.7 0.29 7.4E-06 27.3 4.3 27 5-32 2-28 (150)
224 COG0125 Tmk Thymidylate kinase 91.7 0.99 2.5E-05 24.0 9.0 52 2-54 3-55 (208)
225 PRK08082 consensus 91.6 1 2.6E-05 23.9 9.9 24 4-27 204-227 (453)
226 PRK08760 replicative DNA helic 91.6 1 2.6E-05 23.9 8.9 32 4-35 230-261 (476)
227 PRK07952 DNA replication prote 91.5 1 2.7E-05 23.8 8.8 110 4-141 98-210 (242)
228 COG2074 2-phosphoglycerate kin 91.5 0.85 2.2E-05 24.4 6.5 25 4-28 90-114 (299)
229 KOG0781 consensus 91.5 1.1 2.7E-05 23.8 10.3 168 5-182 381-564 (587)
230 COG0504 PyrG CTP synthase (UTP 91.4 1.1 2.7E-05 23.8 13.6 179 3-185 2-237 (533)
231 cd04166 CysN_ATPS CysN_ATPS su 91.4 1.1 2.7E-05 23.8 11.2 136 4-161 1-139 (208)
232 cd02027 APSK Adenosine 5'-phos 91.3 0.29 7.4E-06 27.3 3.9 30 5-35 2-31 (149)
233 COG1066 Sms Predicted ATP-depe 91.2 1.1 2.8E-05 23.7 11.2 117 4-137 95-225 (456)
234 cd00544 CobU Adenosylcobinamid 91.1 0.82 2.1E-05 24.5 6.1 128 5-151 2-145 (169)
235 PRK00726 murG N-acetylglucosam 91.1 1.1 2.9E-05 23.6 8.1 32 1-34 1-32 (359)
236 smart00382 AAA ATPases associa 91.1 0.78 2E-05 24.7 5.9 29 2-31 2-30 (148)
237 PRK08181 transposase; Validate 91.0 0.31 7.8E-06 27.2 3.8 140 4-174 108-253 (269)
238 PRK08770 DNA polymerase III su 90.8 0.25 6.4E-06 27.7 3.2 26 3-29 39-64 (663)
239 KOG3347 consensus 90.8 0.21 5.3E-06 28.2 2.8 28 3-31 8-35 (176)
240 KOG3354 consensus 90.7 0.53 1.4E-05 25.7 4.8 57 4-65 14-70 (191)
241 PRK06872 DNA polymerase III su 90.7 0.26 6.6E-06 27.7 3.2 26 3-29 39-64 (696)
242 cd03113 CTGs CTP synthetase (C 90.7 1.3 3.2E-05 23.4 14.1 176 3-185 1-237 (255)
243 TIGR02533 type_II_gspE general 90.6 0.2 5.1E-06 28.4 2.5 21 4-28 247-267 (495)
244 PRK06482 short chain dehydroge 90.6 0.1 2.6E-06 30.1 1.0 29 1-29 1-29 (276)
245 PRK09302 circadian clock prote 90.5 1.3 3.3E-05 23.3 7.0 20 4-24 26-45 (501)
246 PRK05648 DNA polymerase III su 90.5 0.27 6.9E-06 27.5 3.1 26 3-29 39-64 (705)
247 PTZ00141 elongation factor 1 a 90.4 1.2 3.1E-05 23.5 6.4 136 4-161 9-154 (443)
248 PRK05124 cysN sulfate adenylyl 90.3 1.4 3.4E-05 23.1 7.2 138 4-161 29-169 (475)
249 PRK06645 DNA polymerase III su 90.2 0.36 9.2E-06 26.7 3.5 27 2-29 43-69 (507)
250 PRK09111 DNA polymerase III su 90.2 0.35 8.9E-06 26.8 3.5 28 2-30 45-72 (600)
251 PRK12323 DNA polymerase III su 90.1 0.32 8.1E-06 27.1 3.2 26 3-29 39-64 (721)
252 COG1484 DnaC DNA replication p 90.1 0.46 1.2E-05 26.1 4.0 29 3-32 106-134 (254)
253 PRK08017 short chain dehydroge 90.0 0.82 2.1E-05 24.5 5.3 33 1-38 1-33 (256)
254 cd04170 EF-G_bact Elongation f 90.0 1.4 3.6E-05 23.0 12.4 80 92-179 62-148 (268)
255 PRK08939 primosomal protein Dn 90.0 0.46 1.2E-05 26.1 4.0 28 3-31 158-185 (306)
256 PRK05537 bifunctional sulfate 90.0 0.39 9.9E-06 26.5 3.6 11 13-23 402-412 (568)
257 PRK07667 uridine kinase; Provi 90.0 0.32 8.2E-06 27.1 3.1 27 5-32 17-43 (190)
258 PRK07994 DNA polymerase III su 89.9 0.36 9.2E-06 26.8 3.3 26 3-29 39-64 (643)
259 PRK08691 DNA polymerase III su 89.8 0.37 9.5E-06 26.6 3.4 27 2-29 38-64 (704)
260 PRK00131 aroK shikimate kinase 89.8 0.44 1.1E-05 26.2 3.7 29 3-32 5-33 (175)
261 KOG2825 consensus 89.8 0.29 7.3E-06 27.4 2.8 25 3-28 20-44 (323)
262 PRK07004 replicative DNA helic 89.6 1.5 3.9E-05 22.8 10.1 24 4-27 214-237 (460)
263 TIGR00483 EF-1_alpha translati 89.4 0.85 2.2E-05 24.4 5.0 126 11-161 15-154 (445)
264 PRK10078 ribose 1,5-bisphospho 89.4 0.43 1.1E-05 26.3 3.4 25 1-26 1-25 (184)
265 PRK00023 cmk cytidylate kinase 89.4 0.36 9.2E-06 26.7 3.0 30 1-31 1-32 (225)
266 cd00009 AAA The AAA+ (ATPases 89.3 0.43 1.1E-05 26.3 3.3 27 3-30 20-46 (151)
267 PRK05636 replicative DNA helic 89.3 1.6 4.1E-05 22.6 9.5 24 4-27 268-291 (507)
268 cd04168 TetM_like Tet(M)-like 89.3 1.6 4.2E-05 22.6 12.1 61 92-161 62-125 (237)
269 PRK07524 hypothetical protein; 89.1 1.6 4.1E-05 22.7 6.2 60 123-185 425-484 (534)
270 PRK07003 DNA polymerase III su 89.1 0.46 1.2E-05 26.1 3.4 26 3-29 39-64 (816)
271 TIGR02782 TrbB_P P-type conjug 89.0 0.39 9.9E-06 26.6 3.0 23 5-28 142-164 (315)
272 PRK06762 hypothetical protein; 89.0 0.54 1.4E-05 25.7 3.7 27 1-28 1-27 (166)
273 cd02024 NRK1 Nicotinamide ribo 88.9 0.47 1.2E-05 26.0 3.3 31 5-36 2-39 (187)
274 TIGR02525 plasmid_TraJ plasmid 88.8 0.36 9.2E-06 26.7 2.7 23 6-29 153-175 (374)
275 PRK13900 type IV secretion sys 88.8 0.37 9.5E-06 26.7 2.8 19 5-24 163-181 (332)
276 TIGR02788 VirB11 P-type DNA tr 88.8 0.44 1.1E-05 26.2 3.1 25 2-27 158-182 (328)
277 PRK05993 short chain dehydroge 88.7 0.82 2.1E-05 24.5 4.5 33 1-38 3-35 (277)
278 COG0703 AroK Shikimate kinase 88.7 0.52 1.3E-05 25.7 3.5 42 1-52 1-42 (172)
279 PRK12735 elongation factor Tu; 88.6 1.8 4.6E-05 22.4 7.9 121 6-161 15-137 (396)
280 PRK03815 murD UDP-N-acetylmura 88.5 0.6 1.5E-05 25.4 3.6 27 2-31 89-115 (401)
281 COG0305 DnaB Replicative DNA h 88.4 1.9 4.8E-05 22.3 8.4 50 4-53 197-246 (435)
282 PRK08853 DNA polymerase III su 88.3 0.51 1.3E-05 25.8 3.2 26 3-29 39-64 (717)
283 cd01130 VirB11-like_ATPase Typ 88.2 0.51 1.3E-05 25.8 3.2 26 2-28 25-50 (186)
284 PRK07414 cob(I)yrinic acid a,c 88.2 1.9 4.9E-05 22.2 6.7 126 3-133 21-158 (178)
285 pfam00437 GSPII_E Type II/IV s 88.2 0.59 1.5E-05 25.4 3.5 22 5-27 142-163 (283)
286 PRK06921 hypothetical protein; 88.1 0.67 1.7E-05 25.0 3.7 28 4-32 118-146 (265)
287 PRK13949 shikimate kinase; Pro 88.1 0.59 1.5E-05 25.4 3.4 30 1-32 1-30 (169)
288 PRK13947 shikimate kinase; Pro 88.1 0.59 1.5E-05 25.4 3.4 30 1-32 1-30 (171)
289 COG2109 BtuR ATP:corrinoid ade 88.0 1.8 4.5E-05 22.4 5.8 129 2-137 27-169 (198)
290 PRK05506 bifunctional sulfate 88.0 2 5.1E-05 22.1 7.0 161 4-185 9-184 (613)
291 KOG0635 consensus 88.0 0.55 1.4E-05 25.6 3.2 27 4-31 33-59 (207)
292 PRK05057 aroK shikimate kinase 87.9 0.65 1.7E-05 25.1 3.5 42 2-54 4-45 (172)
293 PRK00741 prfC peptide chain re 87.9 2 5.1E-05 22.1 10.3 20 5-25 13-32 (526)
294 TIGR02237 recomb_radB DNA repa 87.9 1.6 4.1E-05 22.7 5.5 132 7-161 17-157 (223)
295 cd01886 EF-G Elongation factor 87.8 2 5.2E-05 22.0 11.5 20 7-27 4-23 (270)
296 pfam07724 AAA_2 AAA domain (Cd 87.8 1.9 4.9E-05 22.2 5.9 50 4-54 5-54 (168)
297 pfam02492 cobW CobW/HypB/UreG, 87.7 2.1 5.3E-05 22.0 10.2 110 5-132 3-119 (174)
298 pfam02572 CobA_CobO_BtuR ATP:c 87.7 2.1 5.3E-05 22.0 7.9 130 2-135 2-141 (172)
299 pfam01745 IPT Isopentenyl tran 87.7 1.1 2.9E-05 23.6 4.6 41 4-45 3-51 (232)
300 TIGR03453 partition_RepA plasm 87.6 0.81 2.1E-05 24.6 3.9 32 3-34 105-136 (387)
301 PRK06321 replicative DNA helic 87.6 2.1 5.4E-05 21.9 9.8 33 4-36 227-259 (472)
302 TIGR02068 cya_phycin_syn cyano 87.5 0.47 1.2E-05 26.0 2.6 26 5-33 491-516 (876)
303 pfam01935 DUF87 Domain of unkn 87.5 0.6 1.5E-05 25.4 3.1 25 2-27 23-47 (218)
304 TIGR02982 heterocyst_DevA ABC 87.4 0.53 1.3E-05 25.7 2.8 22 5-28 34-55 (220)
305 PRK12736 elongation factor Tu; 87.3 2.2 5.5E-05 21.9 7.3 119 7-161 16-137 (394)
306 PRK05858 hypothetical protein; 87.1 2.2 5.7E-05 21.8 6.7 55 123-179 426-480 (543)
307 cd01131 PilT Pilus retraction 87.1 0.88 2.2E-05 24.3 3.8 27 4-31 3-29 (198)
308 PRK11929 putative bifunctional 87.1 2.2 5.7E-05 21.8 7.6 27 4-33 113-139 (953)
309 cd01127 TrwB Bacterial conjuga 87.0 0.94 2.4E-05 24.1 3.9 26 2-28 42-67 (410)
310 PRK13833 conjugal transfer pro 87.0 0.72 1.8E-05 24.9 3.3 24 3-27 145-168 (323)
311 TIGR00041 DTMP_kinase thymidyl 86.9 1.3 3.4E-05 23.2 4.7 47 4-51 4-52 (211)
312 cd00561 CobA_CobO_BtuR ATP:cor 86.6 2.4 6E-05 21.6 6.3 126 4-133 3-138 (159)
313 PRK12317 elongation factor 1-a 86.6 2.4 6.1E-05 21.6 7.4 136 4-161 9-149 (426)
314 PRK02496 adk adenylate kinase; 86.6 0.92 2.3E-05 24.2 3.7 33 1-38 1-33 (185)
315 cd01890 LepA LepA subfamily. 86.4 2.5 6.2E-05 21.5 11.3 96 94-198 67-169 (179)
316 cd01428 ADK Adenylate kinase ( 86.2 0.87 2.2E-05 24.4 3.4 31 4-38 1-31 (194)
317 PRK06483 short chain dehydroge 86.1 2.5 6.3E-05 21.5 5.7 33 1-38 1-33 (236)
318 PRK07133 DNA polymerase III su 86.0 0.93 2.4E-05 24.2 3.5 27 2-29 40-66 (718)
319 pfam00009 GTP_EFTU Elongation 85.9 2.6 6.6E-05 21.4 12.7 63 92-162 65-129 (185)
320 PRK13894 conjugal transfer ATP 85.8 0.86 2.2E-05 24.4 3.2 24 3-27 150-173 (320)
321 PRK05201 hslU ATP-dependent pr 85.8 0.91 2.3E-05 24.2 3.3 36 1-37 49-84 (442)
322 PRK09291 short chain dehydroge 85.7 0.38 9.6E-06 26.6 1.3 33 1-38 1-33 (257)
323 PRK05563 DNA polymerase III su 85.7 0.91 2.3E-05 24.2 3.3 27 2-29 38-64 (541)
324 COG0563 Adk Adenylate kinase a 85.6 0.92 2.4E-05 24.2 3.3 24 3-27 1-24 (178)
325 KOG3308 consensus 85.6 1.7 4.3E-05 22.5 4.6 35 1-36 1-44 (225)
326 PRK13973 thymidylate kinase; P 85.5 2.7 6.9E-05 21.3 6.0 51 1-52 1-53 (216)
327 COG1160 Predicted GTPases [Gen 85.5 2.7 6.9E-05 21.2 7.0 69 93-162 225-299 (444)
328 cd01883 EF1_alpha Eukaryotic e 85.3 2.8 7E-05 21.2 6.3 134 6-161 3-146 (219)
329 PRK10787 DNA-binding ATP-depen 85.3 1.3 3.3E-05 23.3 3.9 29 4-33 351-379 (784)
330 COG4963 CpaE Flp pilus assembl 85.1 2.8 7.2E-05 21.2 9.7 178 4-189 106-310 (366)
331 PHA02519 plasmid partition pro 85.0 1.4 3.5E-05 23.1 3.9 30 4-33 108-137 (387)
332 PRK04195 replication factor C 84.9 1.1 2.9E-05 23.6 3.5 25 3-28 41-65 (403)
333 PRK13705 plasmid-partitioning 84.6 1.5 3.8E-05 22.9 4.0 30 4-33 108-137 (388)
334 PRK11160 cysteine/glutathione 84.5 3 7.7E-05 21.0 6.0 25 3-28 368-392 (575)
335 TIGR01081 mpl UDP-N-acetylmura 84.4 1 2.7E-05 23.8 3.1 27 5-34 106-132 (459)
336 PRK13506 formate--tetrahydrofo 84.3 0.6 1.5E-05 25.3 1.8 33 3-35 55-90 (577)
337 PTZ00336 elongation factor 1-a 84.1 3.1 8E-05 20.9 8.5 137 4-161 9-154 (449)
338 PRK12337 2-phosphoglycerate ki 84.1 1.1 2.7E-05 23.8 3.1 24 4-28 264-287 (492)
339 PRK06696 uridine kinase; Valid 84.0 1.5 3.9E-05 22.8 3.8 28 4-32 28-55 (227)
340 CHL00071 tufA elongation facto 83.9 3.2 8.1E-05 20.8 6.4 119 7-161 16-137 (409)
341 pfam03796 DnaB_C DnaB-like hel 83.9 3.2 8.1E-05 20.8 9.9 24 4-27 20-43 (186)
342 TIGR00618 sbcc exonuclease Sbc 83.8 1.2 3.1E-05 23.4 3.3 29 4-36 32-60 (1063)
343 cd00477 FTHFS Formyltetrahydro 83.7 0.62 1.6E-05 25.2 1.7 33 3-35 39-74 (524)
344 PRK06647 DNA polymerase III su 83.6 1.4 3.6E-05 23.0 3.5 27 2-29 38-64 (560)
345 pfam02702 KdpD Osmosensitive K 83.6 3.3 8.4E-05 20.7 12.2 34 4-39 7-40 (211)
346 PRK11448 hsdR type I restricti 83.5 1.6 4.1E-05 22.7 3.7 30 3-34 438-468 (1126)
347 PRK13826 Dtr system oriT relax 83.4 3.3 8.5E-05 20.7 7.6 113 7-141 402-515 (1102)
348 COG3944 Capsular polysaccharid 83.4 0.91 2.3E-05 24.2 2.5 24 166-189 202-225 (226)
349 KOG1384 consensus 83.4 1.3 3.4E-05 23.2 3.3 25 3-28 8-32 (348)
350 PRK13505 formate--tetrahydrofo 83.4 0.67 1.7E-05 25.1 1.8 33 3-35 55-90 (556)
351 PRK13946 shikimate kinase; Pro 83.3 1.4 3.5E-05 23.1 3.3 31 1-32 18-49 (195)
352 PRK10246 exonuclease subunit S 83.3 1.4 3.5E-05 23.1 3.4 23 4-27 32-54 (1047)
353 PRK05595 replicative DNA helic 83.3 3.4 8.6E-05 20.7 10.8 22 4-25 202-223 (444)
354 PRK00440 rfc replication facto 83.2 1.4 3.6E-05 23.0 3.4 25 4-29 39-63 (318)
355 PRK06305 DNA polymerase III su 83.2 1.4 3.6E-05 23.0 3.4 27 3-30 40-66 (462)
356 TIGR02673 FtsE cell division A 83.2 1 2.6E-05 23.9 2.7 23 5-28 31-53 (215)
357 PRK11174 cysteine/glutathione 83.1 3.4 8.8E-05 20.6 9.1 117 3-135 377-515 (588)
358 cd01672 TMPK Thymidine monopho 83.0 3.5 8.9E-05 20.6 8.6 47 5-52 3-50 (200)
359 PRK07024 short chain dehydroge 82.9 0.49 1.2E-05 25.9 0.9 33 1-38 1-33 (256)
360 TIGR01967 DEAH_box_HrpA ATP-de 82.9 0.47 1.2E-05 26.0 0.8 23 4-27 86-112 (1320)
361 pfam01268 FTHFS Formate--tetra 82.8 0.6 1.5E-05 25.3 1.4 33 3-35 55-90 (555)
362 pfam06068 TIP49 TIP49 C-termin 82.7 1.7 4.3E-05 22.5 3.6 35 1-36 48-84 (395)
363 PRK08533 flagellar accessory p 82.5 3.6 9.2E-05 20.5 6.5 105 4-111 26-135 (230)
364 COG3265 GntK Gluconate kinase 82.5 1.9 5E-05 22.2 3.8 50 12-65 4-53 (161)
365 PRK12377 putative replication 82.4 3.6 9.3E-05 20.4 8.9 103 11-141 109-214 (248)
366 COG1220 HslU ATP-dependent pro 82.4 1.6 4.2E-05 22.6 3.4 36 1-37 49-84 (444)
367 PRK13975 thymidylate kinase; P 82.3 1.6 4.2E-05 22.6 3.4 30 1-31 1-30 (198)
368 TIGR01069 mutS2 MutS2 family p 82.3 1.9 4.8E-05 22.3 3.7 29 3-32 342-372 (834)
369 PRK13507 formate--tetrahydrofo 82.3 0.73 1.9E-05 24.8 1.6 33 3-35 64-99 (587)
370 COG0466 Lon ATP-dependent Lon 82.2 1.9 4.8E-05 22.3 3.7 36 4-41 352-387 (782)
371 TIGR02868 CydC ABC transporter 81.9 1.4 3.6E-05 23.0 3.0 26 2-28 387-412 (566)
372 pfam04227 Indigoidine_A Indigo 81.8 3.8 9.7E-05 20.3 6.9 110 95-205 112-245 (293)
373 PRK13889 conjugal transfer rel 81.8 3.8 9.8E-05 20.3 8.8 113 7-141 367-480 (992)
374 PRK06749 replicative DNA helic 81.6 3.9 9.9E-05 20.3 10.3 28 4-31 187-214 (428)
375 pfam04851 ResIII Type III rest 81.6 2.3 6E-05 21.7 4.0 28 4-33 21-48 (103)
376 TIGR02538 type_IV_pilB type IV 81.4 0.81 2.1E-05 24.5 1.6 14 5-19 329-342 (577)
377 PRK13764 ATPase; Provisional 81.3 2.4 6.2E-05 21.5 4.0 28 3-31 260-287 (605)
378 TIGR02528 EutP ethanolamine ut 81.2 0.96 2.5E-05 24.1 1.9 117 3-152 1-121 (144)
379 TIGR03420 DnaA_homol_Hda DnaA 81.1 2.7 6.8E-05 21.3 4.2 30 3-33 39-68 (226)
380 PRK08451 DNA polymerase III su 80.8 2.2 5.6E-05 21.8 3.6 27 2-29 36-62 (523)
381 PRK08506 replicative DNA helic 80.7 4.2 0.00011 20.1 9.8 24 4-27 194-217 (473)
382 cd01129 PulE-GspE PulE/GspE Th 80.6 2.2 5.5E-05 21.9 3.6 29 4-33 82-110 (264)
383 PRK05896 DNA polymerase III su 80.4 2.3 5.8E-05 21.7 3.6 27 2-29 38-64 (613)
384 TIGR03346 chaperone_ClpB ATP-d 80.4 4.3 0.00011 20.0 5.2 21 5-27 198-218 (852)
385 PRK00081 coaE dephospho-CoA ki 80.0 1.9 4.8E-05 22.2 3.1 23 1-24 1-23 (199)
386 COG1435 Tdk Thymidine kinase [ 80.0 2.3 5.8E-05 21.7 3.5 110 1-130 3-117 (201)
387 PRK00411 cdc6 cell division co 79.7 2.6 6.6E-05 21.4 3.7 27 3-30 56-82 (394)
388 PRK12402 replication factor C 79.7 2.2 5.6E-05 21.9 3.3 26 4-30 38-63 (337)
389 COG1855 ATPase (PilT family) [ 79.5 2.5 6.3E-05 21.5 3.5 28 3-31 264-291 (604)
390 TIGR00390 hslU heat shock prot 79.4 2.2 5.5E-05 21.9 3.2 32 1-33 46-77 (463)
391 COG1125 OpuBA ABC-type proline 79.4 4.6 0.00012 19.8 6.0 45 88-132 148-195 (309)
392 pfam03215 Rad17 Rad17 cell cyc 79.3 4.6 0.00012 19.8 10.6 33 4-37 47-82 (490)
393 TIGR00150 TIGR00150 conserved 79.2 1.9 4.9E-05 22.2 2.9 28 3-30 28-55 (147)
394 PRK13721 conjugal transfer ATP 79.1 2.8 7.2E-05 21.1 3.7 23 5-28 477-499 (864)
395 cd01891 TypA_BipA TypA (tyrosi 78.9 4.8 0.00012 19.7 8.1 64 93-162 64-127 (194)
396 TIGR01271 CFTR_protein cystic 78.9 3.2 8.3E-05 20.8 4.0 121 3-131 1287-1420(1534)
397 PRK10263 DNA translocase FtsK; 78.8 1.9 4.8E-05 22.2 2.8 22 4-26 1012-1033(1355)
398 cd03247 ABCC_cytochrome_bd The 78.7 4.8 0.00012 19.7 6.0 25 3-28 29-53 (178)
399 TIGR00631 uvrb excinuclease AB 78.7 1.3 3.3E-05 23.3 1.9 134 9-159 36-197 (667)
400 TIGR02639 ClpA ATP-dependent C 78.7 2.3 5.7E-05 21.8 3.1 20 4-25 232-251 (774)
401 CHL00099 ilvB acetohydroxyacid 78.6 4.9 0.00012 19.7 5.5 22 6-27 77-98 (588)
402 COG2804 PulE Type II secretory 78.6 2.8 7.3E-05 21.1 3.6 29 4-33 260-288 (500)
403 TIGR03345 VI_ClpV1 type VI sec 78.6 2.7 6.9E-05 21.2 3.5 15 12-26 217-231 (852)
404 PRK00698 tmk thymidylate kinas 78.5 4.9 0.00012 19.6 8.3 51 1-52 1-53 (204)
405 PRK08263 short chain dehydroge 78.4 0.89 2.3E-05 24.3 1.0 33 1-38 2-34 (275)
406 pfam01580 FtsK_SpoIIIE FtsK/Sp 78.3 2.2 5.6E-05 21.8 3.0 24 4-28 40-63 (202)
407 cd00881 GTP_translation_factor 78.3 5 0.00013 19.6 9.7 62 93-162 61-124 (189)
408 PRK00049 elongation factor Tu; 78.3 5 0.00013 19.6 8.4 120 7-161 16-138 (397)
409 PRK10436 hypothetical protein; 78.1 3.5 8.9E-05 20.6 4.0 29 4-33 217-245 (461)
410 TIGR01421 gluta_reduc_1 glutat 78.1 1.7 4.3E-05 22.5 2.4 40 87-132 174-213 (475)
411 PRK08266 hypothetical protein; 78.1 5.1 0.00013 19.6 6.3 42 123-166 417-458 (531)
412 PRK08903 hypothetical protein; 78.1 3.5 9E-05 20.5 4.0 29 4-33 44-72 (227)
413 cd00464 SK Shikimate kinase (S 78.0 2.5 6.4E-05 21.5 3.2 27 5-32 2-28 (154)
414 PRK13948 shikimate kinase; Pro 78.0 2.7 6.9E-05 21.3 3.4 28 4-32 12-39 (182)
415 PRK12824 acetoacetyl-CoA reduc 77.9 5.1 0.00013 19.5 7.0 33 1-38 1-33 (245)
416 cd03228 ABCC_MRP_Like The MRP 77.6 5.2 0.00013 19.5 6.5 25 3-28 29-53 (171)
417 cd01393 recA_like RecA is a b 77.2 5.3 0.00014 19.4 7.8 24 5-29 22-45 (226)
418 PRK06067 flagellar accessory p 77.2 4 0.0001 20.2 4.0 30 3-33 33-62 (241)
419 TIGR01826 CofD_related conserv 77.1 2.6 6.7E-05 21.3 3.1 70 90-160 187-265 (331)
420 pfam00006 ATP-synt_ab ATP synt 77.1 5.4 0.00014 19.4 8.6 113 2-130 15-130 (213)
421 cd03785 GT1_MurG MurG is an N- 77.1 5.4 0.00014 19.4 7.1 29 4-33 1-29 (350)
422 PRK00625 shikimate kinase; Pro 76.9 3.1 7.9E-05 20.9 3.4 40 3-52 1-40 (173)
423 pfam00004 AAA ATPase family as 76.8 2.6 6.6E-05 21.4 3.0 26 6-32 2-27 (131)
424 KOG0460 consensus 76.5 3.9 0.0001 20.2 3.9 21 11-31 62-82 (449)
425 PRK08099 nicotinamide-nucleoti 76.4 3.7 9.5E-05 20.4 3.7 29 2-31 231-259 (411)
426 PRK10865 protein disaggregatio 76.4 3.4 8.7E-05 20.6 3.5 20 7-27 204-223 (857)
427 TIGR00382 clpX ATP-dependent C 76.3 1.7 4.3E-05 22.6 1.9 182 5-199 155-367 (452)
428 PRK05986 cob(I)yrinic acid a,c 76.3 5.7 0.00014 19.2 5.5 123 4-135 23-159 (190)
429 PRK04132 replication factor C 76.2 2.3 5.8E-05 21.7 2.6 23 4-27 48-70 (863)
430 COG3911 Predicted ATPase [Gene 76.2 2.8 7.2E-05 21.1 3.1 26 4-33 10-35 (183)
431 PRK07471 DNA polymerase III su 76.1 3.7 9.5E-05 20.4 3.6 28 1-29 38-65 (363)
432 PRK11034 clpA ATP-dependent Cl 76.1 3.6 9.1E-05 20.5 3.5 14 12-25 216-229 (758)
433 PRK06674 DNA polymerase III su 76.1 3.2 8.3E-05 20.8 3.3 27 2-29 38-64 (563)
434 cd01885 EF2 EF2 (for archaea a 76.0 5.3 0.00014 19.4 4.4 61 94-162 73-135 (222)
435 TIGR01193 bacteriocin_ABC ABC- 75.9 5.8 0.00015 19.2 8.3 144 2-160 500-667 (710)
436 COG1474 CDC6 Cdc6-related prot 75.9 3.7 9.5E-05 20.4 3.6 27 4-31 44-70 (366)
437 pfam05729 NACHT NACHT domain. 75.8 4.1 0.0001 20.1 3.8 27 3-30 1-27 (165)
438 pfam06745 KaiC KaiC. This fami 75.7 5.9 0.00015 19.2 8.8 129 3-133 20-165 (231)
439 TIGR01935 NOT-MenG RraA family 75.7 3.5 8.8E-05 20.6 3.4 69 114-186 48-119 (155)
440 CHL00095 clpC Clp protease ATP 75.6 3.7 9.4E-05 20.4 3.5 15 12-26 209-223 (823)
441 cd02020 CMPK Cytidine monophos 75.6 3 7.5E-05 21.0 3.0 36 5-44 2-37 (147)
442 pfam00308 Bac_DnaA Bacterial d 75.6 3.8 9.8E-05 20.3 3.6 26 4-30 36-61 (219)
443 smart00072 GuKc Guanylate kina 75.4 3.5 8.9E-05 20.6 3.4 32 3-35 3-34 (184)
444 PRK10522 multidrug transporter 75.3 2.7 6.9E-05 21.2 2.8 25 3-28 350-374 (547)
445 COG1428 Deoxynucleoside kinase 75.3 3.4 8.8E-05 20.6 3.3 27 3-30 5-31 (216)
446 pfam02223 Thymidylate_kin Thym 75.2 3.5 8.8E-05 20.6 3.3 43 9-52 3-46 (186)
447 PRK07764 DNA polymerase III su 75.1 3.4 8.7E-05 20.6 3.2 26 3-29 38-63 (775)
448 pfam07726 AAA_3 ATPase family 75.0 3.5 8.8E-05 20.6 3.2 28 5-33 2-29 (131)
449 COG0542 clpA ATP-binding subun 74.9 3.7 9.5E-05 20.4 3.4 21 6-27 525-545 (786)
450 cd01918 HprK_C HprK/P, the bif 74.8 3.8 9.6E-05 20.4 3.4 24 2-26 14-37 (149)
451 TIGR02524 dot_icm_DotB Dot/Icm 74.4 3.6 9.2E-05 20.5 3.2 24 4-28 136-159 (358)
452 PRK05642 DNA replication initi 74.3 5.5 0.00014 19.3 4.1 28 3-31 46-73 (234)
453 TIGR03263 guanyl_kin guanylate 74.2 3.9 0.0001 20.2 3.4 24 3-27 2-25 (180)
454 KOG1610 consensus 74.0 6.5 0.00017 18.9 7.9 127 2-150 29-156 (322)
455 COG4088 Predicted nucleotide k 74.0 4.1 0.0001 20.1 3.4 29 4-33 3-31 (261)
456 cd00227 CPT Chloramphenicol (C 73.9 3.5 9E-05 20.5 3.1 30 2-32 2-31 (175)
457 pfam00625 Guanylate_kin Guanyl 73.8 4 0.0001 20.2 3.3 28 3-31 2-29 (182)
458 pfam06431 Polyoma_lg_T_C Polyo 73.8 3.7 9.3E-05 20.4 3.1 26 2-27 154-179 (417)
459 PRK06893 DNA replication initi 73.6 5.2 0.00013 19.5 3.9 27 4-31 41-67 (229)
460 PRK08727 hypothetical protein; 73.6 5.5 0.00014 19.3 4.0 28 4-32 43-70 (233)
461 PRK05342 clpX ATP-dependent pr 73.5 4.1 0.0001 20.1 3.3 30 4-34 111-140 (411)
462 COG0237 CoaE Dephospho-CoA kin 73.5 4.2 0.00011 20.0 3.4 24 1-25 1-24 (201)
463 COG5256 TEF1 Translation elong 73.4 6.7 0.00017 18.8 6.2 135 5-161 10-154 (428)
464 PRK09354 recA recombinase A; P 73.2 6.7 0.00017 18.8 4.4 90 4-106 62-151 (350)
465 TIGR00888 guaA_Nterm GMP synth 73.2 5.2 0.00013 19.5 3.8 37 143-182 33-76 (195)
466 pfam07931 CPT Chloramphenicol 73.2 3.8 9.7E-05 20.3 3.1 29 3-32 2-30 (174)
467 cd03246 ABCC_Protease_Secretio 73.2 6.8 0.00017 18.8 6.0 25 3-28 29-53 (173)
468 PRK00139 murE UDP-N-acetylmura 73.1 6.8 0.00017 18.7 6.6 28 4-34 102-129 (481)
469 cd01385 MYSc_type_IX Myosin mo 73.1 4.7 0.00012 19.8 3.5 24 3-27 95-118 (692)
470 cd01120 RecA-like_NTPases RecA 73.1 6.8 0.00017 18.7 8.1 28 5-33 2-29 (165)
471 PRK07940 DNA polymerase III su 73.0 4.7 0.00012 19.7 3.6 28 1-29 38-65 (395)
472 PRK06882 acetolactate synthase 73.0 6.8 0.00017 18.7 4.7 39 124-164 440-478 (574)
473 pfam07728 AAA_5 AAA domain (dy 72.9 3.8 9.7E-05 20.3 3.1 23 5-28 2-24 (139)
474 COG3421 Uncharacterized protei 72.8 2.6 6.6E-05 21.4 2.2 23 11-33 5-28 (812)
475 pfam10662 PduV-EutP Ethanolami 72.8 3.7 9.3E-05 20.4 2.9 22 1-24 1-22 (143)
476 COG1100 GTPase SAR1 and relate 72.7 3.3 8.5E-05 20.7 2.7 29 3-32 6-34 (219)
477 TIGR02640 gas_vesic_GvpN gas v 72.6 2.2 5.7E-05 21.8 1.8 22 6-28 25-46 (265)
478 pfam09848 DUF2075 Uncharacteri 72.6 7 0.00018 18.7 14.8 167 3-185 2-184 (348)
479 pfam02562 PhoH PhoH-like prote 72.5 5.4 0.00014 19.4 3.7 25 4-29 21-46 (205)
480 pfam08303 tRNA_lig_kinase tRNA 72.3 2.7 6.9E-05 21.3 2.2 18 11-28 7-24 (169)
481 COG1224 TIP49 DNA helicase TIP 72.3 5.2 0.00013 19.5 3.6 33 3-36 66-99 (450)
482 pfam06309 Torsin Torsin. This 72.2 3.3 8.5E-05 20.7 2.6 23 11-33 61-83 (127)
483 pfam05707 Zot Zonular occluden 72.1 5.8 0.00015 19.2 3.8 107 3-132 1-115 (183)
484 COG0630 VirB11 Type IV secreto 72.1 4.2 0.00011 20.1 3.1 14 90-103 140-153 (312)
485 cd03249 ABC_MTABC3_MDL1_MDL2 M 72.1 3.5 8.9E-05 20.6 2.7 25 3-28 30-54 (238)
486 cd03251 ABCC_MsbA MsbA is an e 72.0 3.1 7.9E-05 20.9 2.4 25 3-28 29-53 (234)
487 PRK00300 gmk guanylate kinase; 71.8 4.1 0.0001 20.1 3.0 27 4-31 9-35 (208)
488 cd01377 MYSc_type_II Myosin mo 71.7 5.4 0.00014 19.4 3.6 24 3-27 92-115 (693)
489 PRK06456 acetolactate synthase 71.5 7.2 0.00018 18.6 4.2 18 10-27 74-91 (572)
490 PRK13342 recombination factor 71.5 4.8 0.00012 19.7 3.3 29 4-33 39-67 (417)
491 PRK08084 DNA replication initi 71.4 6.6 0.00017 18.8 4.0 27 4-31 47-73 (235)
492 TIGR01074 rep ATP-dependent DN 71.4 3.6 9.2E-05 20.5 2.6 28 5-34 20-48 (677)
493 TIGR02770 nickel_nikD nickel i 71.4 2.6 6.5E-05 21.4 1.9 23 5-28 15-37 (239)
494 PRK13951 bifunctional shikimat 71.3 5.1 0.00013 19.5 3.4 26 3-29 1-26 (488)
495 PRK07270 DNA polymerase III su 71.3 4.9 0.00012 19.7 3.3 27 2-29 37-63 (557)
496 pfam00931 NB-ARC NB-ARC domain 71.2 4.1 0.0001 20.1 2.9 25 3-28 20-44 (285)
497 PRK06179 short chain dehydroge 71.2 7.5 0.00019 18.5 5.6 33 1-38 1-35 (270)
498 cd03277 ABC_SMC5_euk Eukaryoti 71.2 4.4 0.00011 19.9 3.0 22 5-27 26-47 (213)
499 PRK00652 lpxK tetraacyldisacch 71.1 3.7 9.3E-05 20.4 2.6 25 11-35 59-83 (334)
500 cd01123 Rad51_DMC1_radA Rad51_ 70.9 7.7 0.0002 18.4 7.7 122 7-129 24-166 (235)
No 1
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=100.00 E-value=0 Score=317.60 Aligned_cols=204 Identities=35% Similarity=0.584 Sum_probs=182.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH-----HCCCCCCEECCCC---CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 299983589874799999999998-----4048612013887---38068999998557873114430014510347889
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHAL-----NAYYWKPIQSGMY---EETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLA 75 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l-----~~~~~KPv~~G~~---~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (217)
.|||+||+||||||++|++||++| +++|||||++|+. .++|+.+++..++...+...++|+.|..|.|||.+
T Consensus 1 ~ifI~GT~T~vGKT~vt~~L~~~l~~~G~~v~~~KPv~tG~~~~~~~~Da~~~~~~~~~~~~~~~~~p~~~~~p~sP~~a 80 (223)
T PRK00090 1 VLFVTGTDTGVGKTVVTAALAQALREQGYRVAGYKPVQSGCDGGLRNGDALALQRLSGLPLDYELVNPYRFEEPLSPHLA 80 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHH
T ss_conf 98998689997699999999999997899489975120489889972799999998089998676054025889898999
Q ss_pred HHHHHCCCHH-----HHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 9985023507-----88642232887999227655566767530899999747944897057765045799999999847
Q gi|254780487|r 76 AEIDGVIIDP-----ATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNR 150 (217)
Q Consensus 76 ~~~~~~~i~~-----~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~ 150 (217)
++.++..++. .+.++++.+|++||||+||+++|...+.+++|+|+.+++|||||++.++|++||+++++++++++
T Consensus 81 a~~~g~~i~~~~i~~~~~~l~~~~d~vlvEGaGGl~~Pl~~~~~~~Dla~~l~~pvILV~~~~lG~inhtllt~eal~~~ 160 (223)
T PRK00090 81 ARLEGVTIDLEKISAALRELAQQADLVLVEGAGGLLVPLTDDLTLADLAAQLQLPVILVVGVKLGCINHTLLTLEAIRAR 160 (223)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 99909846899999999999831898999468865567567878899999968898999769888099999989999968
Q ss_pred CCEEEEEEECCCCCC-----CHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 990799997697780-----0599999861998999947888888879999999713399999999
Q gi|254780487|r 151 NINIIGIAFIGDSMP-----KVEETIVKIGRIPHLGRLPKIDPIDPDVLHQKFQEHFTQSLLQKYF 211 (217)
Q Consensus 151 g~~i~GiIlN~~~~~-----~~~~~le~~~~ipvLG~iP~~~~~~~~~l~~~~~~~~~~~~l~~~~ 211 (217)
|++++|||+|+.... ++.++|++.+|+|+||+|||+++++++++ .++++.+.+.+.+
T Consensus 161 gl~v~GvI~N~~~~~~~~~~~~~~~l~~~~gvPvLG~iP~~~~~~~~~~----~~~~~~~~~~~~~ 222 (223)
T PRK00090 161 GLPLAGWVANGVPPEGLRHAENLATLAELLPAPLLGRLPYLAELSPEAA----AAYLDLDKLAELL 222 (223)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH----HHHHCHHHHHHHH
T ss_conf 9948999996858836677768999998549988997589999895899----9873999999864
No 2
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=100.00 E-value=0 Score=309.47 Aligned_cols=205 Identities=25% Similarity=0.360 Sum_probs=171.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCC-----CCCCEECCCCC------CCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 983299983589874799999999998404-----86120138873------8068999998557873114430014510
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAY-----YWKPIQSGMYE------ETDSKTIHRIGRIPKSHIIPEKWKLRTP 69 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~-----~~KPv~~G~~~------~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (217)
|.|+||||||+||||||+||++|+++++.. +||||++|+.. +.|+..++.......++..++|+.+...
T Consensus 1 Mmk~~FITGTDTdVGKT~vsaaL~~~l~~~G~~v~~~KPVasG~~~~~~g~~~~Da~~l~~~~~~~~~~~~vnP~~~~~~ 80 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQALASQGKSVAGYKPVAKGSKETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEE 80 (231)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCC
T ss_conf 99647998789995399999999999997899488885688399668998724789999987378999887197668866
Q ss_pred HHHHHH-HHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 347889-9985023507886422328879992276555667675308999997479448970577650457999999998
Q gi|254780487|r 70 ASPHLA-AEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLR 148 (217)
Q Consensus 70 ~~~~~~-~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~ 148 (217)
.++... ...+...+...+.++.+.+|++||||+||+++|+..+.+++|+++.+++|||||++.++||+||+++|+++++
T Consensus 81 ~aa~~~~~~id~~~i~~~~~~l~~~~d~vlVEGAGG~~vPl~~~~~~~Dl~~~l~lPVILV~~~~LG~INHtLLT~eal~ 160 (231)
T PRK12374 81 ESSVAHSCPINYTLISNGLANLTDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIA 160 (231)
T ss_pred CCCHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCEEECCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 57744548578999999999988557979997798621304765149999998399999998898684889999999999
Q ss_pred HCCCEEEEEEECCCCC-----CCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4799079999769778-----005999998619989999478888888799999997133999999
Q gi|254780487|r 149 NRNINIIGIAFIGDSM-----PKVEETIVKIGRIPHLGRLPKIDPIDPDVLHQKFQEHFTQSLLQK 209 (217)
Q Consensus 149 ~~g~~i~GiIlN~~~~-----~~~~~~le~~~~ipvLG~iP~~~~~~~~~l~~~~~~~~~~~~l~~ 209 (217)
++|++++|||+|+... ..+.++|++.++.|+||+|||+++.++..+++ +++.+.|.+
T Consensus 161 ~~gl~l~G~I~N~~~p~~~~~~e~i~~L~~~~~~P~LG~iP~l~~~~~~~~~~----~l~~~~l~~ 222 (231)
T PRK12374 161 NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQ----YIRLAMLRS 222 (231)
T ss_pred HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH----HCCHHHHHH
T ss_conf 78995799999836797046788999999855999788689999989899997----538898887
No 3
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-45 Score=306.78 Aligned_cols=192 Identities=38% Similarity=0.596 Sum_probs=172.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHH-----HCCCCCCEECCCCCC---CHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 983299983589874799999999998-----404861201388738---068999998557873114430014510347
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHAL-----NAYYWKPIQSGMYEE---TDSKTIHRIGRIPKSHIIPEKWKLRTPASP 72 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l-----~~~~~KPv~~G~~~~---~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (217)
|.|+|||+||+||||||++|++|++++ ++.||||||||..+. +|...+++.++...++..++||+|..|.||
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~P~sP 80 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETAENSDALVLQRLSGLDLSYELINPYRFKEPLSP 80 (223)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCC
T ss_conf 97369998279996499999999999996897059877522178778997459999985199866335433530788884
Q ss_pred HHHHHHHHCCCHHHH-----HHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 889998502350788-----642232887999227655566767530899999747944897057765045799999999
Q gi|254780487|r 73 HLAAEIDGVIIDPAT-----INPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETL 147 (217)
Q Consensus 73 ~~~~~~~~~~i~~~~-----~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~ 147 (217)
|++++.|+..++.+. .++.+.+|++||||+||+++|+..+.+.+|+++.|++|||||++.++|||||++|+++++
T Consensus 81 hlAa~~eg~~I~~~~l~~~l~~l~~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtlLt~eal 160 (223)
T COG0132 81 HLAAELEGRTIDLEKLSQGLRQLLKKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVEAL 160 (223)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 77787648935699998788854054678999678733332578652999999809999999667757787999999999
Q ss_pred HHCCCEEEEEEECCCCCCCH-----HHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf 84799079999769778005-----9999986199899994788888887
Q gi|254780487|r 148 RNRNINIIGIAFIGDSMPKV-----EETIVKIGRIPHLGRLPKIDPIDPD 192 (217)
Q Consensus 148 ~~~g~~i~GiIlN~~~~~~~-----~~~le~~~~ipvLG~iP~~~~~~~~ 192 (217)
+++|++++|||+|+...... ..++++.+++|++|.+||.++...+
T Consensus 161 ~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~~~p~~g~~p~~~~~~~~ 210 (223)
T COG0132 161 RARGLPLAGWVANGINPELDHYAEINATLLKRIGAPLLGIIPYLPESEEE 210 (223)
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf 97799878999726788555788889999974289743405577663201
No 4
>TIGR00347 bioD dethiobiotin synthase; InterPro: IPR004472 The enzyme is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP and requires magnesium as a co-factor. The Thr residue at position seven of the seed alignment is necessary for the binding of ATP.; GO: 0004141 dethiobiotin synthase activity, 0005524 ATP binding, 0009102 biotin biosynthetic process.
Probab=100.00 E-value=7.9e-39 Score=262.70 Aligned_cols=155 Identities=39% Similarity=0.638 Sum_probs=144.9
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH-----CCCCCCEECCCC---CC---CHHHHHHHHHCCCCCCC---CCCCCCCCCCHH
Q ss_conf 99835898747999999999984-----048612013887---38---06899999855787311---443001451034
Q gi|254780487|r 6 VIVGTDTSVGKTIFASALVHALN-----AYYWKPIQSGMY---EE---TDSKTIHRIGRIPKSHI---IPEKWKLRTPAS 71 (217)
Q Consensus 6 ~I~GT~t~vGKT~vs~~L~~~l~-----~~~~KPv~~G~~---~~---~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 71 (217)
||||||||||||++|.+|++.++ ++++|||+||.. ++ +|+..++.+.....+.+ .++|+.|..|.|
T Consensus 1 FvTGtDT~VGKT~~ss~La~~lk~~G~~~g~~Kpv~tG~~~~~~dL~~~D~~~L~~~~~~~~~~~~Pi~~~P~~F~~Pls 80 (187)
T TIGR00347 1 FVTGTDTGVGKTVVSSALAKKLKKAGYSVGYYKPVQTGIEETAEDLRNEDTELLQNISGTALDLDGPIEVNPYAFALPLS 80 (187)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 91022458617899899999999759852511200015766776310567999987654432138984426632056886
Q ss_pred HHHHHHHHHCCCHH---------HHHHHHHHCCEEEEECCCCCCCCCC-CCCCHHHHHHHH------CCCEEEEECCCCC
Q ss_conf 78899985023507---------8864223288799922765556676-753089999974------7944897057765
Q gi|254780487|r 72 PHLAAEIDGVIIDP---------ATINPPDINDSIIIEGIGGLLVPLT-TEYLFIDLIERW------QFPIILCARTSLG 135 (217)
Q Consensus 72 ~~~~~~~~~~~i~~---------~~~~~~~~~D~viIEGagg~~~~~~-~~~~~~dla~~l------~~~vILV~~~~~g 135 (217)
||.+++.|++.++. +|.++.+++|++|||||||+++|.. .+.+.+|+++.+ ++|+|||++.++|
T Consensus 81 P~~A~~~Eg~~i~~~~~~~~~~naye~l~~~~d~~lVEGAGG~~vP~~r~~~t~~D~i~~~ietsGh~L~~ilV~r~~LG 160 (187)
T TIGR00347 81 PHIAAKQEGRPIDLEELSKHLRNAYEELEEKYDFVLVEGAGGLCVPITREEYTVADLIKLLIETSGHQLPVILVVRVKLG 160 (187)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 25888617783268889878878999999717917998336242666612457999999998505882027987468646
Q ss_pred HHHHHHHHHHHHHHCCCE--EEEEEEC
Q ss_conf 045799999999847990--7999976
Q gi|254780487|r 136 TINHSLLSLETLRNRNIN--IIGIAFI 160 (217)
Q Consensus 136 ~i~~~~l~~~~~~~~g~~--i~GiIlN 160 (217)
+||||+|+++++++.|++ ++|||+|
T Consensus 161 tiNHt~Lt~~~~~~~Gl~shl~G~i~N 187 (187)
T TIGR00347 161 TINHTLLTVEAARQTGLKSHLAGVILN 187 (187)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 067999999999977994443545619
No 5
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=100.00 E-value=3.1e-33 Score=227.62 Aligned_cols=124 Identities=35% Similarity=0.540 Sum_probs=113.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHC-----CCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9998358987479999999999840-----48612013887380689999985578731144300145103478899985
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNA-----YYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEID 79 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~-----~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (217)
+++.||+||||||++|++|+|+++. .+|||+++
T Consensus 1 ~~~~GTdT~VGKT~vt~~l~~~l~~~G~~v~~~KPv~t------------------------------------------ 38 (134)
T cd03109 1 IMGFGTGTDIGKTVATAILARALKEKGYRVAPLKPVQT------------------------------------------ 38 (134)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHC------------------------------------------
T ss_conf 95752788876899999999999977991778756672------------------------------------------
Q ss_pred HCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 02350788642232887999227655566767530899999747944897057765045799999999847990799997
Q gi|254780487|r 80 GVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAF 159 (217)
Q Consensus 80 ~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIl 159 (217)
+|+++|||+||+++|+..+.+++|+++.+++|+|||++.++|++||+++++++++++|++++|+|+
T Consensus 39 --------------~D~vlVEGaGG~~vPl~~~~~~~Dl~~~l~~pvIlV~~~~LG~INhtlLt~eal~~~gi~v~G~i~ 104 (134)
T cd03109 39 --------------YDFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLG 104 (134)
T ss_pred --------------CCEEEEECCCCEEECCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf --------------798999889774600389862999999709998999778878589999999999987992889999
Q ss_pred CCCCC-----CCHHHHHHHHCCCCEEEEEC
Q ss_conf 69778-----00599999861998999947
Q gi|254780487|r 160 IGDSM-----PKVEETIVKIGRIPHLGRLP 184 (217)
Q Consensus 160 N~~~~-----~~~~~~le~~~~ipvLG~iP 184 (217)
|+... .++.++|++++++|+||++|
T Consensus 105 N~~~~~~~~~~~N~~~I~~~t~vPvLG~vP 134 (134)
T cd03109 105 NVIVEKEGLATLNVETIERLTGIPVLGIVP 134 (134)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 467997106787599999974999778288
No 6
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=100.00 E-value=2.3e-31 Score=215.89 Aligned_cols=196 Identities=19% Similarity=0.233 Sum_probs=144.2
Q ss_pred CC-CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC--CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 98-3299983589874799999999998404861--20138873806899999855787311443001451034788999
Q gi|254780487|r 1 MK-LRLVIVGTDTSVGKTIFASALVHALNAYYWK--PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAE 77 (217)
Q Consensus 1 M~-~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K--Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (217)
|+ ++|+|+||+||+|||++|+||||+|+++|+| ||++| +++.|+.++....+.... ...++....
T Consensus 1 m~~p~lmI~gt~S~~GKT~vt~gL~r~l~~rG~~VapFK~G-PDyIdp~~~~~a~g~~~~--nLD~~l~~~--------- 68 (451)
T PRK01077 1 MRMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG-PDYIDPAFHAAATGRPSR--NLDSWMMGE--------- 68 (451)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHHHCCCCC--CCCHHHCCH---------
T ss_conf 99887999868999978999999999999687945753578-576298999999789753--588344899---------
Q ss_pred HHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCC---CCCHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHHCCC
Q ss_conf 8502350788642232887999227655566767---53089999974794489705776--504579999999984799
Q gi|254780487|r 78 IDGVIIDPATINPPDINDSIIIEGIGGLLVPLTT---EYLFIDLIERWQFPIILCARTSL--GTINHSLLSLETLRNRNI 152 (217)
Q Consensus 78 ~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~---~~~~~dla~~l~~~vILV~~~~~--g~i~~~~l~~~~~~~~g~ 152 (217)
..+...+.+.++++|++||||++|++++... ..+.+++|+.+++|||||++++. +++...+.+...+. ...
T Consensus 69 ---~~v~~~~~~~~~~~D~~viEG~mGlyDG~~~~~~~gS~aeiA~~l~~PViLViD~~~~~~s~aa~v~G~~~~~-~~~ 144 (451)
T PRK01077 69 ---DLVRALFARAAGGADIAVIEGVMGLFDGAGGDPDKGSTADIARLLGAPVVLVVDASGMAQSAAALVLGFARFD-PDL 144 (451)
T ss_pred ---HHHHHHHHHHCCCCCEEEEEECHHCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHC-CCC
T ss_conf ---9999999975466888998501011345456777777899998709988999846620899999999999759-778
Q ss_pred EEEEEEECCCCCCCHHHH----HHHHCCCCEEEEECCCCCCCHHH--------------------HHHHHHHHHHHHHHH
Q ss_conf 079999769778005999----99861998999947888888879--------------------999999713399999
Q gi|254780487|r 153 NIIGIAFIGDSMPKVEET----IVKIGRIPHLGRLPKIDPIDPDV--------------------LHQKFQEHFTQSLLQ 208 (217)
Q Consensus 153 ~i~GiIlN~~~~~~~~~~----le~~~~ipvLG~iP~~~~~~~~~--------------------l~~~~~~~~~~~~l~ 208 (217)
+|+|+|+|+...+.+.+. +|+ +|+||||+||+.+++..++ +.+..+++++...+.
T Consensus 145 ~I~GvIlNk~~g~~h~~ll~~~ie~-~gvpvlG~lP~~~~l~lpeRHLGLv~~~E~~~~~~~~~~~~~~~~~~id~~~l~ 223 (451)
T PRK01077 145 NIAGVILNRVGSERHYQLLREALEE-LGLPVLGALPRDAALALPERHLGLVQASEIADLEARLDALADLVEAHVDLDALL 223 (451)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 7748996247876689999999986-399579861576334564212577670456668999999999998617999999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780487|r 209 KYFYE 213 (217)
Q Consensus 209 ~~~~~ 213 (217)
+.++.
T Consensus 224 ~i~~~ 228 (451)
T PRK01077 224 ALARA 228 (451)
T ss_pred HHHHC
T ss_conf 98504
No 7
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=100.00 E-value=5e-31 Score=213.79 Aligned_cols=196 Identities=20% Similarity=0.235 Sum_probs=153.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCC--CCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 329998358987479999999999840486--120138873806899999855787311443001451034788999850
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYW--KPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG 80 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~--KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
++++|+||+|++|||+||+||+++|+.+++ +|+++| |++.|+.++..+.+.....- .+|....
T Consensus 1 ~~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvG-PDYIDP~~H~~atG~~srNL--D~~mm~~------------ 65 (451)
T COG1797 1 PAVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVG-PDYIDPGYHTAATGRPSRNL--DSWMMGE------------ 65 (451)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCC--CHHHCCH------------
T ss_conf 93599548888858999999999998668721665568-78638135667638856777--6544699------------
Q ss_pred CCCHHHHHHHHHHCCEEEEECCCCCCCCCC---CCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEE
Q ss_conf 235078864223288799922765556676---7530899999747944897057765045799999999847-990799
Q gi|254780487|r 81 VIIDPATINPPDINDSIIIEGIGGLLVPLT---TEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNR-NINIIG 156 (217)
Q Consensus 81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~---~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~-g~~i~G 156 (217)
..+...|.+..++.|+.||||++|++++.. ...|.+++|+.|++|||||.+++..+-+.+.....+...+ +++|+|
T Consensus 66 ~~v~~~f~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaG 145 (451)
T COG1797 66 EGVRALFARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAG 145 (451)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 89999999862789879996123023688777677779999998599989999575225789999988986199882578
Q ss_pred EEECCCCCCCHHH----HHHHHCCCCEEEEECCCCCCCHH--------------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9976977800599----99986199899994788888887--------------------99999997133999999999
Q gi|254780487|r 157 IAFIGDSMPKVEE----TIVKIGRIPHLGRLPKIDPIDPD--------------------VLHQKFQEHFTQSLLQKYFY 212 (217)
Q Consensus 157 iIlN~~~~~~~~~----~le~~~~ipvLG~iP~~~~~~~~--------------------~l~~~~~~~~~~~~l~~~~~ 212 (217)
||+|+...+++.+ .+|+.+++||||+||+.+++.-+ .+++..++++|...+.+.++
T Consensus 146 VIlNrVgserH~~llr~Ale~~~gv~vlG~lpr~~~l~lp~RHLGLV~a~E~~~~~~~~~~~a~~v~~~vDld~l~~ia~ 225 (451)
T COG1797 146 VILNRVGSERHYELLRDALEEYTGVPVLGYLPRDDDLELPSRHLGLVPASERLELEAKLEALAEVVEKHVDLDALLEIAS 225 (451)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99724777889999998755327985798742785567854132653430344489999999999986078988999874
Q ss_pred H
Q ss_conf 8
Q gi|254780487|r 213 E 213 (217)
Q Consensus 213 ~ 213 (217)
+
T Consensus 226 ~ 226 (451)
T COG1797 226 S 226 (451)
T ss_pred C
T ss_conf 3
No 8
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=99.97 E-value=5.6e-31 Score=213.50 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=153.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC--CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2999835898747999999999984048--61201388738068999998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYY--WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~--~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
|+.||||+|.||||+||+||+++|..++ .+|++.| |++.|+.++..+.+..+...+. |.... .
T Consensus 1 rVviAGt~S~vGKT~I~~g~m~~L~~~~~~VQ~fKVG-PDYIDP~fH~~aTGr~sRNLDs----F~~~~----------~ 65 (464)
T TIGR00379 1 RVVIAGTSSKVGKTTISTGIMKALSRRKLEVQPFKVG-PDYIDPSFHTLATGRKSRNLDS----FFMSE----------A 65 (464)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEC-CCCCCCCCCCCCCCCCCCCCCH----HHHHH----------H
T ss_conf 9788305687547899999999986186324654425-8743788454114786667685----33028----------9
Q ss_pred CCHHHHHHHHHHC--CEEEEECCCCCCCCC-----CCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH-HCCCE
Q ss_conf 3507886422328--879992276555667-----675308999997479448970577650457999999998-47990
Q gi|254780487|r 82 IIDPATINPPDIN--DSIIIEGIGGLLVPL-----TTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLR-NRNIN 153 (217)
Q Consensus 82 ~i~~~~~~~~~~~--D~viIEGagg~~~~~-----~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~-~~g~~ 153 (217)
.|...|.+..++. |+.||||..|+|+++ ....|+|++||.|++|||||++++.=+-+.+..-..+.. +++++
T Consensus 66 ~i~~~F~~~~~~~Gs~~s~IEGv~GLYdg~Py~a~~d~gStA~vAk~L~~PvvLv~n~~~L~~saaAiv~Gy~~fdp~V~ 145 (464)
T TIGR00379 66 QIKELFIRHSKGAGSDVSIIEGVRGLYDGIPYSAISDKGSTASVAKALDAPVVLVVNAKRLSRSAAAIVLGYRSFDPDVK 145 (464)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 99999998613478965797274134367688776877518899998659889999564033578677641343089831
Q ss_pred EEEEEECCCCCCCHH----HHHHHHC-CCCEEEEECCCCCCCHH----------------------HHHHHHHHHHHHHH
Q ss_conf 799997697780059----9999861-99899994788888887----------------------99999997133999
Q gi|254780487|r 154 IIGIAFIGDSMPKVE----ETIVKIG-RIPHLGRLPKIDPIDPD----------------------VLHQKFQEHFTQSL 206 (217)
Q Consensus 154 i~GiIlN~~~~~~~~----~~le~~~-~ipvLG~iP~~~~~~~~----------------------~l~~~~~~~~~~~~ 206 (217)
|+|||||++..++|. ..+|+++ ||+|||+|||..++.-| .+++..++|+|..+
T Consensus 146 l~GVILN~V~~~rH~~k~k~A~e~L~Pgi~vlG~~pR~~~l~~p~RHLGLVpa~E~l~~~~~~~~~~la~~~e~~lD~~k 225 (464)
T TIGR00379 146 LKGVILNRVGSERHLEKLKTAVEKLAPGIEVLGVIPRKEDLKVPDRHLGLVPAVERLDEIIQQILDWLAEVVEKYLDLDK 225 (464)
T ss_pred EEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 78788731077446899999988636894588777367532147754653166135317899999999999997449779
Q ss_pred HHHHHHHH
Q ss_conf 99999985
Q gi|254780487|r 207 LQKYFYES 214 (217)
Q Consensus 207 l~~~~~~~ 214 (217)
|.+.+++.
T Consensus 226 l~~i~~~~ 233 (464)
T TIGR00379 226 LLEIAEKA 233 (464)
T ss_pred HHHHHCCC
T ss_conf 88874067
No 9
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.97 E-value=6.1e-30 Score=207.00 Aligned_cols=193 Identities=18% Similarity=0.237 Sum_probs=142.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC--CCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98329998358987479999999999840486--1201388738068999998557873114430014510347889998
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYW--KPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEI 78 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~--KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
|+ .|+|+||+||+|||+||+||+++|+++|+ +|+++| |++.|+.++..+++.....-+ +|.....
T Consensus 1 Mk-gilIAa~~SgsGKTtvt~gL~~aL~~rG~~Vq~FK~G-PDYIDP~~h~~a~G~~~~NLD--~~m~~~~--------- 67 (432)
T PRK13896 1 MD-GVVLAGTSSGVGKTVATLAVLQALADAGYDVQPAKAG-PDFIDPSHHEAVVDTPSRSLD--PWLSGED--------- 67 (432)
T ss_pred CC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHHHCCCCCCCC--HHHCCHH---------
T ss_conf 96-2899778999989999999999999784963766668-475198999999689844689--1018989---------
Q ss_pred HHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH--HHH---CCCE
Q ss_conf 50235078864223288799922765556676753089999974794489705776504579999999--984---7990
Q gi|254780487|r 79 DGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLET--LRN---RNIN 153 (217)
Q Consensus 79 ~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~--~~~---~g~~ 153 (217)
.+...+. ....|+.||||++|++++ ...+++++|+.|++|||||++++..+-+.+.+...+ +.. ++++
T Consensus 68 ---~v~~~~~--~~~aDiaviEGvMGLyDG--~~~Sta~lA~~l~~PVvLVvd~~~~~~s~aA~v~G~~~f~~~~~~d~~ 140 (432)
T PRK13896 68 ---GMRRTYW--RGTGDVCVVEGMMGLYDG--TVASTAAVAEELDLPVVLVVDAKAGMESVAATALGFQAYADRAGVDID 140 (432)
T ss_pred ---HHHHHHH--HCCCCEEEEEECCCCCCC--CCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf ---9999997--279986999612324578--877589999984999899993320188899999999972412476524
Q ss_pred EEEEEECCCCCCCHHHHHHHHC--CCCEEEEECCCCCCCHHH----------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999976977800599999861--998999947888888879----------------99999971339999999998
Q gi|254780487|r 154 IIGIAFIGDSMPKVEETIVKIG--RIPHLGRLPKIDPIDPDV----------------LHQKFQEHFTQSLLQKYFYE 213 (217)
Q Consensus 154 i~GiIlN~~~~~~~~~~le~~~--~ipvLG~iP~~~~~~~~~----------------l~~~~~~~~~~~~l~~~~~~ 213 (217)
|+|||+|+...+.+++.+++.. ++||||+||+.+++..++ ..+...+++|...+.+.+++
T Consensus 141 iaGVIlN~v~s~rh~~~l~~al~~~i~vlG~lPr~~~l~lp~RHLGL~~~~E~~~~~~~~~~~~~~vDl~~ll~~a~~ 218 (432)
T PRK13896 141 VAGVLAQRAHGGRHADGIRDALPDELTYFGRVPPRSDLEIPDRHLGLHMGSEAPIDDDALDAAAAHIDIERIVDVARA 218 (432)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf 766884267758899999999870894898842477789841025987333442389999999864789999987508
No 10
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=99.97 E-value=7.5e-31 Score=212.73 Aligned_cols=185 Identities=20% Similarity=0.196 Sum_probs=146.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCC--CEECCC-----------CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH-
Q ss_conf 99983589874799999999998404861--201388-----------7380689999985578731144300145103-
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWK--PIQSGM-----------YEETDSKTIHRIGRIPKSHIIPEKWKLRTPA- 70 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~K--Pv~~G~-----------~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~- 70 (217)
|+|.||.|++|||++|+||||-|+++||| ||+++. .+-.=|+..|.++..-.|...+||..+.+.-
T Consensus 1 iMV~GTsS~AGKs~l~AaLCRiL~rrGy~VAPFKsQNMSLNSfvt~~~~EiA~AQ~~QA~AAGieP~~~mNPvLLKPkgd 80 (502)
T TIGR00313 1 IMVVGTSSSAGKSLLTAALCRILARRGYRVAPFKSQNMSLNSFVTAEGGEIAIAQALQALAAGIEPSVHMNPVLLKPKGD 80 (502)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 95420115402899999999998527881278501101013331137875513768999863878862348710167888
Q ss_pred -----------------HHHHHH--HHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCC--CCCCHHHHHHHHCCCEEEE
Q ss_conf -----------------478899--9850235078864223288799922765556676--7530899999747944897
Q gi|254780487|r 71 -----------------SPHLAA--EIDGVIIDPATINPPDINDSIIIEGIGGLLVPLT--TEYLFIDLIERWQFPIILC 129 (217)
Q Consensus 71 -----------------~~~~~~--~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~--~~~~~~dla~~l~~~vILV 129 (217)
..+... ..-.+.|..++..+.++||+||||||||.++-.. .|+.|.++|+.++|.+|||
T Consensus 81 f~SQviv~G~a~g~~~~~~Y~~~~~d~~~~~i~eSle~L~~~Yd~vv~EGAGS~AEINL~~rDLaN~~iA~~~~A~~iLv 160 (502)
T TIGR00313 81 FTSQVIVHGRAVGDMNAQEYYKNKVDFLLKAIKESLEILAEEYDLVVIEGAGSPAEINLKERDLANMRIAELADADVILV 160 (502)
T ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEE
T ss_conf 46678984112466761567779999999999999987520288899826887100053315722478986439767999
Q ss_pred ECCCCCHHHHH-HHHHHHHHHC-CCEEEEEEECCCCC-----CCHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 05776504579-9999999847-99079999769778-----0059999986199899994788888
Q gi|254780487|r 130 ARTSLGTINHS-LLSLETLRNR-NINIIGIAFIGDSM-----PKVEETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 130 ~~~~~g~i~~~-~l~~~~~~~~-g~~i~GiIlN~~~~-----~~~~~~le~~~~ipvLG~iP~~~~~ 189 (217)
+|++.|++.+. +-|+..+..+ ...|||||+|+... ....++||++|||||||+|||.+.+
T Consensus 161 ADIDRGGVFAsi~GTl~LL~~~~r~liKG~vINkfRG~~~vL~~GI~~lEelTGiPVLGv~PY~~~l 227 (502)
T TIGR00313 161 ADIDRGGVFASIYGTLKLLPEEERKLIKGIVINKFRGNVDVLESGIEKLEELTGIPVLGVLPYDENL 227 (502)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCCCEECEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 7507774324337466618834575003068835468724434456899885484234465012577
No 11
>PRK00784 cobyric acid synthase; Provisional
Probab=99.97 E-value=2.1e-29 Score=203.67 Aligned_cols=190 Identities=18% Similarity=0.159 Sum_probs=143.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC--CEECCC-----------CCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 983299983589874799999999998404861--201388-----------7380689999985578731144300145
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWK--PIQSGM-----------YEETDSKTIHRIGRIPKSHIIPEKWKLR 67 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K--Pv~~G~-----------~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 67 (217)
|+|+|+|.||+||||||++++||||.|++.|+| ||+++. .+-.-++.+|.......+...+||..+.
T Consensus 2 ~~k~lMv~GT~S~vGKS~l~aaLCRi~~~~G~~VaPFKaQNMslNs~vt~dG~EigrAQ~~QA~Aag~~p~v~MNPILLK 81 (492)
T PRK00784 2 MAKALMVQGTTSDAGKSTLVAGLCRILARRGLRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVLLK 81 (492)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEECCCCCEEHHHHHHHHHHCCCCCCCCCCCEEEC
T ss_conf 86305888678887799999999999995898557857022466517889998336999999998699997676887763
Q ss_pred CCH------------------HH-HHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCC--CCCHHHHHHHHCCCE
Q ss_conf 103------------------47-889998502350788642232887999227655566767--530899999747944
Q gi|254780487|r 68 TPA------------------SP-HLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTT--EYLFIDLIERWQFPI 126 (217)
Q Consensus 68 ~~~------------------~~-~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~--~~~~~dla~~l~~~v 126 (217)
+.- .. +.........+..++.++.++||++|+||||++.+.... +..|..+|+.+++||
T Consensus 82 P~gd~~SQVIv~Gk~~g~~~a~~Y~~~~~~~~~~v~~a~~~L~~~~d~iV~EGAGSpaEiNL~~~Di~Nm~~A~~~~apv 161 (492)
T PRK00784 82 PQSDTGSQVIVQGKVVGNMDARDYHDYKPRLLEAVLESLDRLAAEYDLVVVEGAGSPAEINLRDRDIANMGFAEAADAPV 161 (492)
T ss_pred CCCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 18998867999997875313999998699999999999999886588999935898200265220024289998659988
Q ss_pred EEEECCCCCHHHHHH-HHHHHHHHC-CCEEEEEEECCCCC-----CCHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 897057765045799-999999847-99079999769778-----00599999861998999947888888
Q gi|254780487|r 127 ILCARTSLGTINHSL-LSLETLRNR-NINIIGIAFIGDSM-----PKVEETIVKIGRIPHLGRLPKIDPID 190 (217)
Q Consensus 127 ILV~~~~~g~i~~~~-l~~~~~~~~-g~~i~GiIlN~~~~-----~~~~~~le~~~~ipvLG~iP~~~~~~ 190 (217)
|||+|++.|++...+ -|++.+... ...|+|+|+|+... ....+++|+.||+||||+|||++++.
T Consensus 162 iLV~DIdRGGvfAsl~GT~~lL~~~eR~li~G~IiNKFRGD~~ll~pG~~~le~~tg~PvlGviP~~~~l~ 232 (492)
T PRK00784 162 ILVADIDRGGVFASLVGTLALLSPEERARVKGFVINKFRGDISLLEPGLDWLEELTGIPVLGVLPYLDDLR 232 (492)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCHHHHHHEEEEEEEEECCCHHHHCCHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 99997567642687763887599988711589999764587466355999999986898068614656799
No 12
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=99.95 E-value=1.3e-26 Score=186.16 Aligned_cols=201 Identities=16% Similarity=0.133 Sum_probs=141.8
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH-----HCCCCCCEECC---CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 83299983589874799999999998-----40486120138---87380689999985578731144300145103478
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHAL-----NAYYWKPIQSG---MYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPH 73 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l-----~~~~~KPv~~G---~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (217)
+|+|||++|+.++|||+|++||+++| |++|||||... ...|.|..+++..++...+ .+.++.+......+
T Consensus 1 arsIyIa~te~~sGKTsVaLGL~~aL~r~g~KVGfFKPI~q~~~~~~~D~~i~Li~~~~~L~~~--~~i~~s~a~~ll~~ 78 (702)
T PRK05632 1 SRTIYLAPTGTGVGLTSVSLGLVRALERKGVKVGFFKPIAQPRPDDGPDRSTELLRARLGLPYE--EPLSLSYAEELLAS 78 (702)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCC--CCCCHHHHHHHHHC
T ss_conf 9369996279998799999999999983688479983355478889976079999985598953--36078899999868
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHH----HHHHHHHHHH-
Q ss_conf 89998502350788642232887999227655566767530899999747944897057765045----7999999998-
Q gi|254780487|r 74 LAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTIN----HSLLSLETLR- 148 (217)
Q Consensus 74 ~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~----~~~l~~~~~~- 148 (217)
.........+-..|..+.+++|++||||........+....|+++|+.|++|||||++.+..+.. ...++.+.+.
T Consensus 79 g~~D~LlE~IV~~y~~l~~~~DvVLVEGs~~~~~~~~~~~lNa~IAknLgA~VILV~~~~~~s~~el~d~i~ia~~~f~~ 158 (702)
T PRK05632 79 GQLDVLLEEIVARYHALAKDCDVVLVEGLVPTRKHPFALSLNAEIAKNLGAEVILVSSGGNDTPEELAERIELAARSFGG 158 (702)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99899999999999997538998999488878898604433599999769988999638999999999999999998523
Q ss_pred HCCCEEEEEEECCCCCCCHH-------HHHH---------HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 47990799997697780059-------9999---------861998999947888888879999999713399
Q gi|254780487|r 149 NRNINIIGIAFIGDSMPKVE-------ETIV---------KIGRIPHLGRLPKIDPIDPDVLHQKFQEHFTQS 205 (217)
Q Consensus 149 ~~g~~i~GiIlN~~~~~~~~-------~~le---------~~~~ipvLG~iP~~~~~~~~~l~~~~~~~~~~~ 205 (217)
.+|.++.|+|+|+...+... +.+. +..++|+||+|||.+.+..+++.++. +++..+
T Consensus 159 ~k~~~vlGvIiNrv~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~lLGvIP~~p~L~aPrV~DIa-~~L~A~ 230 (702)
T PRK05632 159 AKNANILGVIINKVNADEQGRTRPDLSEIFDDSSKAAQLFASSPLPLLGVVPWSPDLIAPRVIDIA-KHLGAT 230 (702)
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHH-HHHCCE
T ss_conf 069978999984798235556678899864433332113322798769984796002788299999-983989
No 13
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=99.88 E-value=1.6e-22 Score=160.49 Aligned_cols=189 Identities=18% Similarity=0.182 Sum_probs=140.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC--CEEC-----------CCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 983299983589874799999999998404861--2013-----------887380689999985578731144300145
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWK--PIQS-----------GMYEETDSKTIHRIGRIPKSHIIPEKWKLR 67 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K--Pv~~-----------G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 67 (217)
|+ .|+|.||.|++|||++++||||.+.+++++ ||++ +..+-.-++.+|.......+...++|+.+.
T Consensus 1 ~~-~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLLK 79 (486)
T COG1492 1 MK-AIMVQGTTSDAGKSFLVAGLCRILARRGYRVAPFKSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLLK 79 (486)
T ss_pred CC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEECCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf 98-53787214776546752453488873577547870654346607877996875506678987399874342877870
Q ss_pred CCH------------------HH-H-HHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCC--CCCHHHHHHHHCCC
Q ss_conf 103------------------47-8-89998502350788642232887999227655566767--53089999974794
Q gi|254780487|r 68 TPA------------------SP-H-LAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTT--EYLFIDLIERWQFP 125 (217)
Q Consensus 68 ~~~------------------~~-~-~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~--~~~~~dla~~l~~~ 125 (217)
+.- .+ + .........+..++.++.+.+|++++||+|+....... +..|..+|+..++|
T Consensus 80 P~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dap 159 (486)
T COG1492 80 PCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLDREYDVVVIEGAGSPAEINLRDRDIANMGVAEIADAP 159 (486)
T ss_pred ECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCEEEEHHCCCC
T ss_conf 35888447999463446657178899988999999999998754105589996379823227663661100220233898
Q ss_pred EEEEECCCCCHHHHHH-HHHHHHH-HCCCEEEEEEECCCCC-----CCHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 4897057765045799-9999998-4799079999769778-----00599999861998999947888888
Q gi|254780487|r 126 IILCARTSLGTINHSL-LSLETLR-NRNINIIGIAFIGDSM-----PKVEETIVKIGRIPHLGRLPKIDPID 190 (217)
Q Consensus 126 vILV~~~~~g~i~~~~-l~~~~~~-~~g~~i~GiIlN~~~~-----~~~~~~le~~~~ipvLG~iP~~~~~~ 190 (217)
||||++++.|++++.+ -|++.+. ...-.|+|+|+|+... ....++||+.||+|+||++||++..-
T Consensus 160 vILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~tg~~vlGv~P~~~~~~ 231 (486)
T COG1492 160 VILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELTGVPVLGVLPYLKDAL 231 (486)
T ss_pred EEEEEEECCCCEEEEEEEHHEECCHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCC
T ss_conf 899995115645417302122368767600147999631798788745999999861974675652555455
No 14
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=129.49 Aligned_cols=192 Identities=19% Similarity=0.173 Sum_probs=125.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHH-----HCCCCCCEE--CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 983299983589874799999999998-----404861201--3887380689999985578731144300145103478
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHAL-----NAYYWKPIQ--SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPH 73 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l-----~~~~~KPv~--~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (217)
|++.+|+..|++++|||.|++||+|++ +++|||||. +|...+.....+............+.+..+.......
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~kPI~~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~~~ae~L~~~ 80 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFKPIGTRTGKDADDLTEEDIRATSSSLTYAEPLVLSFAEVLLST 80 (354)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC
T ss_conf 96149984268886288999999999997073269984045556776520689999876520566753000068887415
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHH----HHHHHHHHHHHH
Q ss_conf 8999850235078864223288799922765556676753089999974794489705776504----579999999984
Q gi|254780487|r 74 LAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTI----NHSLLSLETLRN 149 (217)
Q Consensus 74 ~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i----~~~~l~~~~~~~ 149 (217)
.....-...+...|..+.+.+|++++||--..+...+....|..+|+.|++++++|++...-+. ++......++..
T Consensus 81 ~~~d~l~e~i~~~y~e~~~~~~~vv~~g~~~~~~~~~~~~ln~~iA~~Lna~~vlva~~~~~~~~~~~~~i~~~~~~~~~ 160 (354)
T COG0857 81 GQDDVLLEEILANYAELAKDADVVVVEGDVPTREGPYALDLNYEIAKNLNAAAVLVARALLVTPYELKSRVELALAAFGA 160 (354)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 64167999999999987236766884253001335764101479885068115431141337766656699999988605
Q ss_pred CCCEEEEEEECCCCCCCHH-------HHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf 7990799997697780059-------9999861998999947888888879
Q gi|254780487|r 150 RNINIIGIAFIGDSMPKVE-------ETIVKIGRIPHLGRLPKIDPIDPDV 193 (217)
Q Consensus 150 ~g~~i~GiIlN~~~~~~~~-------~~le~~~~ipvLG~iP~~~~~~~~~ 193 (217)
.+-++.|||+|+.+..... +.+++ .++.++|.+|...-+....
T Consensus 161 ~~~~l~gVv~N~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~ll~~~~ 210 (354)
T COG0857 161 AGNNLAGVVINNAPVDEAGRTEDLLAEFLES-SGIAVVGVLPPNRLLRSSP 210 (354)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHHCCCC
T ss_conf 6883589996578755523244689987630-2543224478778753785
No 15
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.62 E-value=3.4e-15 Score=114.62 Aligned_cols=165 Identities=21% Similarity=0.308 Sum_probs=106.5
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH--H
Q ss_conf 83299983589874799999999998404861201388738068999998557873114430014510347889998--5
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEI--D 79 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 79 (217)
++.|++.||+|++|||+++.+|+.+|+...|- ...| +|+..+ .|..|..+.+...+..-+. .
T Consensus 244 kkgiiLl~TgS~SGKTFl~T~i~~kL~~kvfv-~KiG----pDvRDI-----------VPsLYllrE~M~ky~SIkI~~r 307 (482)
T PRK06278 244 KKGIILLATGSESGKTFLSTSIVSKLRGKTFV-SKIG----PDVRDI-----------VPSLYLLREPMEKYSSIKISDR 307 (482)
T ss_pred CCEEEEEECCCCCCCEEHHHHHHHHHCCCEEE-EECC----CCHHHC-----------CHHHHHCCCHHHHCCCEEECCC
T ss_conf 96599984378777431167788875064899-8608----866652-----------5246310421220461685467
Q ss_pred HCCCHHHH-HH-HHHHCCEEEEECCCCCCCCCCC---CCCHHHHHHHHCCCEEEEECCCCCHHHHHH----HHHHHHHHC
Q ss_conf 02350788-64-2232887999227655566767---530899999747944897057765045799----999999847
Q gi|254780487|r 80 GVIIDPAT-IN-PPDINDSIIIEGIGGLLVPLTT---EYLFIDLIERWQFPIILCARTSLGTINHSL----LSLETLRNR 150 (217)
Q Consensus 80 ~~~i~~~~-~~-~~~~~D~viIEGagg~~~~~~~---~~~~~dla~~l~~~vILV~~~~~g~i~~~~----l~~~~~~~~ 150 (217)
++.--..+ .. ..++||++||||+||.+.+... .++.+++|+.++.||++|++|..+++..+. .-+..++..
T Consensus 308 GW~~~~efle~vk~sdYd~~iiEGVMgafTg~Ln~k~~YS~aeIak~lg~PvyivS~cnksGIEgAfve~~ay~slLk~~ 387 (482)
T PRK06278 308 GWMEPSEFLEFVKNSDYDNYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSKGGIEGAFVELMAYYSLLKEM 387 (482)
T ss_pred CCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 87689999999734798789985047888887505788768999985599889994255566047899999999999866
Q ss_pred CCEEEEEEECCCCCCCHHHHHH---HHCCCCEEEE
Q ss_conf 9907999976977800599999---8619989999
Q gi|254780487|r 151 NINIIGIAFIGDSMPKVEETIV---KIGRIPHLGR 182 (217)
Q Consensus 151 g~~i~GiIlN~~~~~~~~~~le---~~~~ipvLG~ 182 (217)
|+++.|+|+|+.-....-+-+. +..++.++|+
T Consensus 388 Gv~v~giILNKvYn~~ifekvk~~~~~~~i~~~~V 422 (482)
T PRK06278 388 GVNVAGIILNKVYNMEIFEKVKKIASNLNINVIGV 422 (482)
T ss_pred CCCEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 97358899741125889999999998659529861
No 16
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=99.38 E-value=6.1e-12 Score=94.22 Aligned_cols=179 Identities=17% Similarity=0.144 Sum_probs=99.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCC-CHHHHH----------------------HHHHCCCCCCCCC
Q ss_conf 99983589874799999999998404861201388738-068999----------------------9985578731144
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEE-TDSKTI----------------------HRIGRIPKSHIIP 61 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~-~D~~~~----------------------~~~~~~~~~~~~~ 61 (217)
|.|++...|||||++|+.|+++|...++|-..-..... .+...+ .............
T Consensus 1 Iav~s~KGGVGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T pfam01656 1 IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRNL 80 (212)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCCC
T ss_conf 98976899806999999999999978997899838999962588658764344444410101121002456422245555
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 30014510347889998502350788642232887999227655566767530899999747944897057765045799
Q gi|254780487|r 62 EKWKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSL 141 (217)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~ 141 (217)
.+..+.......................+...+|++||++.+|+... .......-+ -+|+|+....-++..+.
T Consensus 81 ~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~D~viiD~pp~~~~~------~~~al~~ad-~vivv~~p~~~sl~~~~ 153 (212)
T pfam01656 81 DPLLLIPSNLSLANFESELILEGGEEGLIKLAYDYVIIDGAPGLGEL------TANALVAAD-ILVVPIEPEGVAVLGAQ 153 (212)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH------HHHHHHCCC-EEEEEECCCHHHHHHHH
T ss_conf 87465335015667777779999998766604998999479975599------999998399-89999489769999999
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCC--C----HHHHHHHHCCCCEE---EEECCCCCCC
Q ss_conf 999999847990799997697780--0----59999986199899---9947888888
Q gi|254780487|r 142 LSLETLRNRNINIIGIAFIGDSMP--K----VEETIVKIGRIPHL---GRLPKIDPID 190 (217)
Q Consensus 142 l~~~~~~~~g~~i~GiIlN~~~~~--~----~~~~le~~~~ipvL---G~iP~~~~~~ 190 (217)
..++.+++.++++.|+|+|+.... . ..+.+++.+++|++ |+||+...+.
T Consensus 154 ~l~~~~~~l~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~d~~v~ 211 (212)
T pfam01656 154 RLLELVERLGLKILGVVLNKVDRGDERHLDKEIEALERKTGIPVLLLLGVIPRDLALS 211 (212)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 9999999859962299991488998366307899999997899751404116877668
No 17
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=99.32 E-value=6.2e-12 Score=94.18 Aligned_cols=176 Identities=19% Similarity=0.171 Sum_probs=113.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHH--HHHHHHHCCCC---CCCC---------------CCC
Q ss_conf 299983589874799999999998404861201388738068--99999855787---3114---------------430
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDS--KTIHRIGRIPK---SHII---------------PEK 63 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~--~~~~~~~~~~~---~~~~---------------~~~ 63 (217)
.|-|+.=.-|+||||||+-|.=||-.-|-|=+. -|.|- -.+.-+++++. +..+ +..
T Consensus 2 ~I~iASGKGGtGKTT~tANLgVALA~~Gk~V~~----~DADI~MANL~LiLgmE~~~VTLhDVLAGeA~i~DAIY~gp~G 77 (258)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLV----LDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPEG 77 (258)
T ss_pred EEEEEECCCCCCHHHEEEHHHHHHHHCCCEEEE----EECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 889997788986140000077889860976899----9467667768988446888967522134456100110028898
Q ss_pred --CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf --014510347889998502350788642232887999227655566767530899999747944897057765045799
Q gi|254780487|r 64 --WKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSL 141 (217)
Q Consensus 64 --~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~ 141 (217)
+......|-....+=.-++.......+.+.+|++||.-.-|+.-....-.+-+| ..+||++..-.||.+++
T Consensus 78 nV~V~PagvSLEg~rKA~~~~L~dV~~~i~~~~D~lLIDAPAGL~~~a~~Al~~a~-------elLLVvNPEi~SItDaL 150 (258)
T TIGR01969 78 NVKVIPAGVSLEGLRKADPDKLEDVLKEIIDDTDFLLIDAPAGLERDAVTALAAAD-------ELLLVVNPEISSITDAL 150 (258)
T ss_pred CEEEECCCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCC-------CCEEEECCCHHHHHHHH
T ss_conf 44785061221000126833328999987204377887478983378999998618-------66486676544677788
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCC---HHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 9999998479907999976977800---599999861998999947888888
Q gi|254780487|r 142 LSLETLRNRNINIIGIAFIGDSMPK---VEETIVKIGRIPHLGRLPKIDPID 190 (217)
Q Consensus 142 l~~~~~~~~g~~i~GiIlN~~~~~~---~~~~le~~~~ipvLG~iP~~~~~~ 190 (217)
-+...+++.|.++.|+|+|+...+. .++.+|.....||||+||..++..
T Consensus 151 K~k~va~~lGt~ilG~vlNRv~~~~tel~~~eiE~iLevPVl~~vPEDP~VR 202 (258)
T TIGR01969 151 KVKIVAEKLGTAILGVVLNRVTRDKTELGREEIEAILEVPVLGVVPEDPEVR 202 (258)
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 9999987608832468996023666637888999884797389856984344
No 18
>CHL00175 minD septum-site determining protein; Validated
Probab=99.14 E-value=7.8e-10 Score=81.05 Aligned_cols=181 Identities=17% Similarity=0.098 Sum_probs=103.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE-------------CCCCCCCHHHHHHHHHCCCCCCCC--CCC--
Q ss_conf 983299983589874799999999998404861201-------------388738068999998557873114--430--
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ-------------SGMYEETDSKTIHRIGRIPKSHII--PEK-- 63 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~-------------~G~~~~~D~~~~~~~~~~~~~~~~--~~~-- 63 (217)
|+|-|-|+.-.-|||||++|.-|+.+|...|+|=.- -|.... ......+.......... +..
T Consensus 12 m~kiIaV~s~KGGVGKTT~a~NLa~aLA~~G~kVlliD~D~~~~n~~~~lg~~~~-~~~~~~~vl~g~~~l~~~~i~~~~ 90 (279)
T CHL00175 12 MTRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENR-VVYTAMEVLEGECRLDQALIRDKR 90 (279)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC-CCCCHHHHCCCCCCCCCCEEECCC
T ss_conf 8869999748998448999999999999789988999578999987532686666-667476640787664301342577
Q ss_pred --CCCCCCHHHH-HHHHHHHCCCHHHHHH-HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf --0145103478-8999850235078864-22328879992276555667675308999997479448970577650457
Q gi|254780487|r 64 --WKLRTPASPH-LAAEIDGVIIDPATIN-PPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINH 139 (217)
Q Consensus 64 --~~~~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~ 139 (217)
....-+.+.. ................ ...+||++||+...|+.. .........+ .+|+|+....-++..
T Consensus 91 ~~~l~ll~~~~~~~~~~~~~~~~~~ll~~l~~~~yDyiiID~ppgl~~------~~~~al~aad-~viIvttpe~~al~d 163 (279)
T CHL00175 91 WPNLSLLPISKNRQRYNVTRKNMNMLVDSLKERNYDYILIDCPAGIDV------GFINAIAPAK-EAIVVTTPEITAIRD 163 (279)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH------HHHHHHHHCC-EEEEECCCCHHHHHH
T ss_conf 787799978970544574199999999999727999999818998889------9999999789-069978997899999
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCC-------HHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 999999998479907999976977800-------59999986199899994788888
Q gi|254780487|r 140 SLLSLETLRNRNINIIGIAFIGDSMPK-------VEETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 140 ~~l~~~~~~~~g~~i~GiIlN~~~~~~-------~~~~le~~~~ipvLG~iP~~~~~ 189 (217)
+.-.++.++..+++..++|.|+..... ..+.+++..++|+||.||+.+.+
T Consensus 164 a~~~i~~~~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~~~~~l~v~~lg~IP~D~~v 220 (279)
T CHL00175 164 ADRVAGLLEANGIYNIKLLVNRVRPDMIKANDMMSVRDVQEMLGIPLLGAIPEDENV 220 (279)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCHHH
T ss_conf 999999999759986213533564554354553449999997199346576787789
No 19
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.11 E-value=3.8e-09 Score=76.70 Aligned_cols=181 Identities=13% Similarity=0.047 Sum_probs=101.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHC-CCCCCEECCCCCCCHHHHHHH----------HHC----CCCCCCCCCCCC
Q ss_conf 98329998358987479999999999840-486120138873806899999----------855----787311443001
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNA-YYWKPIQSGMYEETDSKTIHR----------IGR----IPKSHIIPEKWK 65 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~-~~~KPv~~G~~~~~D~~~~~~----------~~~----~~~~~~~~~~~~ 65 (217)
|+|+|-|.| ..|+|||++|.-|..+|.. .+.|-.+-|+++-.|...... ... .......+...-
T Consensus 1 m~~~iaiyG-KGGIGKSTTt~NLaaALA~l~GkrVl~IgcDPk~dST~~l~g~~~~~tv~d~l~~~~~~~~~~e~ii~~g 79 (275)
T PRK13233 1 MTRKIAIYG-KGGIGKSTTTQNTAAAMAHFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTG 79 (275)
T ss_pred CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHCC
T ss_conf 973899989-9854465459999999996479889997978876136776089878839999986288755388887537
Q ss_pred CCCCH-----HHHHHHHHHHCCCH------HHHHHHHHHCCEEEEECCCCCCCCCCCC---CCHHHHHHHHCCCEEEEEC
Q ss_conf 45103-----47889998502350------7886422328879992276555667675---3089999974794489705
Q gi|254780487|r 66 LRTPA-----SPHLAAEIDGVIID------PATINPPDINDSIIIEGIGGLLVPLTTE---YLFIDLIERWQFPIILCAR 131 (217)
Q Consensus 66 ~~~~~-----~~~~~~~~~~~~i~------~~~~~~~~~~D~viIEGagg~~~~~~~~---~~~~dla~~l~~~vILV~~ 131 (217)
+.... .|.-.....+..+- ..+.....++|++++.-.|.+.++...- ...+| .|++|+.
T Consensus 80 ~~gv~cVEaGgp~pG~gcagrgii~~~~lle~~~~~~~~~D~Vl~DvLGdVvcGgFa~Pir~~~Ad-------eV~IVts 152 (275)
T PRK13233 80 FKGIRCVESGGPEPGVGCAGRGVITAITLMEEHGAYEDDLDFVFFDVLGDVVCGGFAMPIRDGKAQ-------EVYIVAS 152 (275)
T ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-------EEEEEEC
T ss_conf 898579868999866655763123588889980974346888998415611055510343136688-------8999946
Q ss_pred CCCCHHHHH---HHHHHH-HHHCCCEEEEEEECCCCCCCHHH---HHHHHCCCCEEEEECCCCCC
Q ss_conf 776504579---999999-98479907999976977800599---99986199899994788888
Q gi|254780487|r 132 TSLGTINHS---LLSLET-LRNRNINIIGIAFIGDSMPKVEE---TIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 132 ~~~g~i~~~---~l~~~~-~~~~g~~i~GiIlN~~~~~~~~~---~le~~~~ipvLG~iP~~~~~ 189 (217)
+...++..+ .-++.. ..+.+.++.|+|+|+...+...+ .+.+..+.++++.||+...+
T Consensus 153 ~E~msL~aannI~~~l~~~~~~~~~~l~Gii~N~r~~~~e~~~v~~fa~~ig~~vi~~IPr~~~V 217 (275)
T PRK13233 153 GEMMALYAANNICKGLVKYAEQSGVRLGGIICNSRNVDGELELLEEFTDAIGTQLIHFVPRDNIV 217 (275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHHH
T ss_conf 83799999999999999985058963899997178886079999999998599579977897788
No 20
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.10 E-value=1.9e-09 Score=78.64 Aligned_cols=174 Identities=15% Similarity=0.124 Sum_probs=95.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHH----------HHHHH-----CCCCCCCCCCCCCCC
Q ss_conf 329998358987479999999999840486120138873806899----------99985-----578731144300145
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKT----------IHRIG-----RIPKSHIIPEKWKLR 67 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~----------~~~~~-----~~~~~~~~~~~~~~~ 67 (217)
|+|-|.|- -|||||++|+-|+.+|...|.|=.+-++....|... +.... ........+-..-+.
T Consensus 1 ~~iaiyGK-GGVGKTTts~NLaaaLA~~G~rVl~iD~Dp~~~st~~L~g~~~~~~i~~~~~~~~~~~~~~~~~ii~~g~~ 79 (212)
T cd02117 1 RQIAIYGK-GGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFG 79 (212)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf 95999889-83568778999999999869969999038998733031199778719999875278664456678996688
Q ss_pred ----CCH-HHHHHHHHHHCC------CHHHHHHHHHHCCEEEEECCC-----CCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf ----103-478899985023------507886422328879992276-----5556676753089999974794489705
Q gi|254780487|r 68 ----TPA-SPHLAAEIDGVI------IDPATINPPDINDSIIIEGIG-----GLLVPLTTEYLFIDLIERWQFPIILCAR 131 (217)
Q Consensus 68 ----~~~-~~~~~~~~~~~~------i~~~~~~~~~~~D~viIEGag-----g~~~~~~~~~~~~dla~~l~~~vILV~~ 131 (217)
-+. .|.......+.. ..........++|++|+.-.| |+..|+.. ..+| .|++|+.
T Consensus 80 gv~~veaggp~~g~~~ag~~i~~~~~ll~~~~~~~~~~D~IliD~lGdvv~~gf~~pi~~--~~Ad-------~vlIvtt 150 (212)
T cd02117 80 GVKCVESGGPEPGVGCAGRGVITAVNLLEKEGFAEDDLDVVLYDVLGDVVCGGFAMPIRE--GKAD-------EIYIVTS 150 (212)
T ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCCC--CCCC-------EEEEECC
T ss_conf 708998899776765454117889999997410025799999965885403563343211--6688-------8999806
Q ss_pred CCCCHH---HHHHHHHHHHHHC-CCEEEEEEECCCCCCCHHHH---HHHHCCCCEEEEECCC
Q ss_conf 776504---5799999999847-99079999769778005999---9986199899994788
Q gi|254780487|r 132 TSLGTI---NHSLLSLETLRNR-NINIIGIAFIGDSMPKVEET---IVKIGRIPHLGRLPKI 186 (217)
Q Consensus 132 ~~~g~i---~~~~l~~~~~~~~-g~~i~GiIlN~~~~~~~~~~---le~~~~ipvLG~iP~~ 186 (217)
+.--++ ++.+-+++.++++ ++++.|+|.|+...+...+. +.+..++|+++.||+.
T Consensus 151 ~E~~Al~~a~~l~k~I~~~~~~~n~~l~GiI~N~~~~~~~~~~i~~f~~~~g~~vl~~IP~d 212 (212)
T cd02117 151 GEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 93578898899999999997367981489998467888649999999998399189974899
No 21
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.08 E-value=2.2e-09 Score=78.26 Aligned_cols=160 Identities=19% Similarity=0.277 Sum_probs=88.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH--HHHHHHCCCCCCCC-----CCCCCCCCCHH-----
Q ss_conf 2999835898747999999999984048612013887380689--99998557873114-----43001451034-----
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK--TIHRIGRIPKSHII-----PEKWKLRTPAS----- 71 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~----- 71 (217)
+|-|+.-.-|||||++|+.|+++++.... -|.|.. .+...++....... ..... ..+..
T Consensus 1 kIaV~SgKGGVGKTT~a~nLA~~l~~V~l--------iD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~g 71 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALLKNVVL--------ADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAV-IDPELCISCG 71 (179)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCCEE--------EEECCCCCCHHHHCCCCCCCCEEEEECCCCCE-ECHHHHHHCC
T ss_conf 98999589986099999999997428719--------99418998577771876563212230465335-1506653235
Q ss_pred --HHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf --788999850235078864223288799922765556676753089999974794489705776504579999999984
Q gi|254780487|r 72 --PHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRN 149 (217)
Q Consensus 72 --~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~ 149 (217)
....... ...........++|++||....|+..... ......+ -+|+|+....-++.++.-.++.+++
T Consensus 72 ~~~~~~~~~---~~~~~~~~~~~~~D~viiD~Ppg~~~~~~------~al~~ad-~~iiVttP~~~si~d~~r~i~l~~~ 141 (179)
T cd03110 72 LCGKLVTEV---RKHAKEIAKAEGAELIIIDGPPGIGCPVI------ASLTGAD-AALLVTEPTPSGLHDLERAVELVRH 141 (179)
T ss_pred CHHHHHHHH---HHHHHHHHHCCCCCEEEEECCCCCCHHHH------HHHHCCC-EEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 176889999---99999986443799899818999757899------9997399-4999819947899999999999998
Q ss_pred CCCEEEEEEECCCCCC-C----HHHHHHHHCCCCEEEEEC
Q ss_conf 7990799997697780-0----599999861998999947
Q gi|254780487|r 150 RNINIIGIAFIGDSMP-K----VEETIVKIGRIPHLGRLP 184 (217)
Q Consensus 150 ~g~~i~GiIlN~~~~~-~----~~~~le~~~~ipvLG~iP 184 (217)
.|+++ |+|+|+.... . .++..++ .++|+||.||
T Consensus 142 ~~~~~-gvV~Nr~~~~~~~~~~i~~~~~~-~~vp~LG~iP 179 (179)
T cd03110 142 FGIPV-GVVINKYDLNDEIAEEIEDYCEE-EGIPILGKIP 179 (179)
T ss_pred CCCCE-EEEEECCCCCCCCHHHHHHHHHH-HCCCEEEECC
T ss_conf 29978-99996887887634899999998-0999898387
No 22
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.07 E-value=1.6e-09 Score=79.05 Aligned_cols=178 Identities=16% Similarity=0.190 Sum_probs=104.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCC----CCCHHHHH--
Q ss_conf 983299983589874799999999998404861201388738068999998557873114430014----51034788--
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKL----RTPASPHL-- 74 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-- 74 (217)
|++.|-|.|-+ |+|||++|+-|..+|...|.|-++-|+.+..|..... .+...+ ..+..+.. .....+..
T Consensus 1 ~~~~iaiyGKG-GIGKSTttaNlsaALA~~GkkV~~IgcDPk~DsT~~L--~g~~~~-tild~l~~~~~~~~~~~~ed~~ 76 (269)
T PRK13185 1 MALVLAVYGKG-GIGKSTTSSNLSAALAKLGKKVLQIGCDPKHDSTFTL--TGKLVP-TVIDILEEVDFHSEELRPEDFV 76 (269)
T ss_pred CCEEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHC--CCCCCC-CHHHHHHHCCCCHHHCCHHHHH
T ss_conf 95399997899-5478889999999999769938998189973230112--599878-7899997438760212566776
Q ss_pred -----------------HHHHHHCCCHHHHH-----HHHHHCCEEEEECCCCCCCCCC-CCCCHHHHHHHHCCCEEEEEC
Q ss_conf -----------------99985023507886-----4223288799922765556676-753089999974794489705
Q gi|254780487|r 75 -----------------AAEIDGVIIDPATI-----NPPDINDSIIIEGIGGLLVPLT-TEYLFIDLIERWQFPIILCAR 131 (217)
Q Consensus 75 -----------------~~~~~~~~i~~~~~-----~~~~~~D~viIEGagg~~~~~~-~~~~~~dla~~l~~~vILV~~ 131 (217)
.....+..+..++. .+.+++|+++..-.|++..+.. ....-+| .+++|++
T Consensus 77 ~~G~~gv~cvEaGGP~pG~GCaGrgi~~~~~~L~~~~~~~~~D~Vl~DvlgdVvCGGFa~Pi~~Ad-------~~~IVts 149 (269)
T PRK13185 77 FEGYNGVDCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGGFAAPLQYAD-------YALIVTA 149 (269)
T ss_pred HCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHCCC-------EEEEEEC
T ss_conf 337677056643899998776764318999999872874337879995367433365557510088-------8999925
Q ss_pred CCCCHHHH---HHHHHHHHH-HCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 77650457---999999998-47990799997697780059999986199899994788888
Q gi|254780487|r 132 TSLGTINH---SLLSLETLR-NRNINIIGIAFIGDSMPKVEETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 132 ~~~g~i~~---~~l~~~~~~-~~g~~i~GiIlN~~~~~~~~~~le~~~~ipvLG~iP~~~~~ 189 (217)
....++.. ....++... +.+.++.|+|.|+....+..+.+.+.++.|++|.||+.+.+
T Consensus 150 ~e~~al~aAnnI~~~i~~~a~~~~~rl~GiI~Nr~~~~d~v~~fa~~~g~~vl~~IP~~~~V 211 (269)
T PRK13185 150 NDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSGGTDQIDKFNERVGLRTLAHVPDLDAI 211 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEECCCCHHH
T ss_conf 30878999999999998653015853232576168837799999998699769978997889
No 23
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.04 E-value=3.3e-09 Score=77.10 Aligned_cols=175 Identities=17% Similarity=0.207 Sum_probs=101.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC----CHHHHH-----
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451----034788-----
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRT----PASPHL----- 74 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----- 74 (217)
+|-|.|-+ |+|||++|+-|..+|...|.|-++-|+.+..|..... .+...+ ..+..+.... ...++.
T Consensus 2 kiaiyGKG-GIGKSTttaNl~aaLA~~G~kVl~IgcDpk~Dst~~L--~g~~~~-tvld~l~~~~~~~~~~~~~d~v~~g 77 (267)
T cd02032 2 VLAVYGKG-GIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTL--TGFLIP-TVIDILEEVDFHYEELWPEDVIYEG 77 (267)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH--CCCCCC-CHHHHHHHHCCCHHHCCHHHHHHCC
T ss_conf 79997799-6578778999999999879959997789951556752--698868-3999998608866641477875307
Q ss_pred --------------HHHHHHCCCHHHHH-----HHHHHCCEEEEECCCCCCCC-CCCCCCHHHHHHHHCCCEEEEECCCC
Q ss_conf --------------99985023507886-----42232887999227655566-76753089999974794489705776
Q gi|254780487|r 75 --------------AAEIDGVIIDPATI-----NPPDINDSIIIEGIGGLLVP-LTTEYLFIDLIERWQFPIILCARTSL 134 (217)
Q Consensus 75 --------------~~~~~~~~i~~~~~-----~~~~~~D~viIEGagg~~~~-~~~~~~~~dla~~l~~~vILV~~~~~ 134 (217)
.....+..+...+. .+.+++|++++.-.|++..+ ......-+| .+++|++...
T Consensus 78 ~~gv~cvEaGgP~pg~Gcagrgi~~~~~lL~~l~~~~~~D~Vl~DvlgdVvcgGFa~pi~~Ad-------~~~iVTs~e~ 150 (267)
T cd02032 78 YGGVDCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGGFAAPLNYAD-------YALIVTDNDF 150 (267)
T ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC-------EEEEEECCCH
T ss_conf 678457665899999887764048999999871664347789995366544566567610068-------8999956718
Q ss_pred CHHHHH---HHHHHHHH-HCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 504579---99999998-47990799997697780059999986199899994788888
Q gi|254780487|r 135 GTINHS---LLSLETLR-NRNINIIGIAFIGDSMPKVEETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 135 g~i~~~---~l~~~~~~-~~g~~i~GiIlN~~~~~~~~~~le~~~~ipvLG~iP~~~~~ 189 (217)
.++.++ ...++... ..+.++.|+|.|+....+..+.+.+.+++|++|.||+.+..
T Consensus 151 ~sl~aAn~I~~~i~~~~~~~~~rl~GlI~Nr~~~~~~i~~fa~~lg~~lig~VP~d~~V 209 (267)
T cd02032 151 DSIFAANRIAAAVREKAKTYKVRLAGLIANRTDKTDLIDKFVEAVGMPVLAVLPLIEDI 209 (267)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEECCCCHHH
T ss_conf 78999999999999975337976422787469857899999997299469966993388
No 24
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.03 E-value=8.6e-09 Score=74.52 Aligned_cols=178 Identities=11% Similarity=0.054 Sum_probs=106.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCC-------------CCCCCCCCCC
Q ss_conf 983299983589874799999999998404861201388738068999998557873-------------1144300145
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKS-------------HIIPEKWKLR 67 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~-------------~~~~~~~~~~ 67 (217)
|.++|-|.|-+ |+|||+++.-|..++.. +.|-.+-|+.+..|..... .+...+ ..++...-+.
T Consensus 1 ~m~~iAiyGKG-GIGKSTt~~NlaaalA~-g~rVl~igcDpk~dst~~L--~G~~~ptvl~~l~~~~~~~~~dvv~~g~~ 76 (264)
T PRK13231 1 VLKKIAIYGKG-GIGKSTTVSNMAAAYSS-DNSTLVIGCDPKADTTRTL--VGKRIPTVLDTLKDNRQPELEDIIYEGYN 76 (264)
T ss_pred CCEEEEEECCC-CCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHH--HCCCCCCHHHHHHHCCCCCHHHHEEECCC
T ss_conf 94289997898-54788899999999987-9977998568885024676--19998838898631277776563121789
Q ss_pred C-----CHHHHHHHHHHHCCCHHHH------HHHHHHCCEEEEECCCCCCCCCCCC---CCHHHHHHHHCCCEEEEECCC
Q ss_conf 1-----0347889998502350788------6422328879992276555667675---308999997479448970577
Q gi|254780487|r 68 T-----PASPHLAAEIDGVIIDPAT------INPPDINDSIIIEGIGGLLVPLTTE---YLFIDLIERWQFPIILCARTS 133 (217)
Q Consensus 68 ~-----~~~~~~~~~~~~~~i~~~~------~~~~~~~D~viIEGagg~~~~~~~~---~~~~dla~~l~~~vILV~~~~ 133 (217)
. .-.|.-.....+.-+..++ .....+.|++++.-.|++..+...- ...+| .+++|++..
T Consensus 77 gi~cvesGgpepg~gcagrgi~~~~~lLe~~~~~~~~~D~vl~Dvlgdvvcggfa~Pir~~~Ad-------ev~IVts~e 149 (264)
T PRK13231 77 NTLCVESGGPEPGVGCAGRGVIVAMNLLEKLGVFDNDPDVVIYDVLGDVVCGGFSVPLREDYAD-------EVYIVTSGE 149 (264)
T ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEECCCCCCCCC-------EEEEEECCC
T ss_conf 8499737998877665652176898999872642247987999435872056670455426698-------899994785
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH---HHHHCCCCEEEEECCCCCC
Q ss_conf 6504579999999984799079999769778005999---9986199899994788888
Q gi|254780487|r 134 LGTINHSLLSLETLRNRNINIIGIAFIGDSMPKVEET---IVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 134 ~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~~~~---le~~~~ipvLG~iP~~~~~ 189 (217)
..++..+.-....+++.+.++.|+|.|+.+.+...+. +.+..|.|++|.||+...+
T Consensus 150 ~msLyaAnnI~~~i~~~~~rl~GiI~N~r~~~~e~~iv~~fa~~~g~~vl~~IPr~~~V 208 (264)
T PRK13231 150 YMSLYAANNIAKGIKKLKGKLGGIICNCRNVKNEVEIVSEFASLIGSRIIGIIPRSNLV 208 (264)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 89999999999999995464420896068988779999999997199689966894788
No 25
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=98.96 E-value=8e-08 Score=68.43 Aligned_cols=153 Identities=18% Similarity=0.144 Sum_probs=97.9
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf 99983589874799999999998404861201388738068999998557873114430014510347889998502350
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIID 84 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 84 (217)
|.|+...-|+|||++++.|+.+|...++|-.- -|.|. .+.+ . |..++.+.......+..
T Consensus 2 i~v~s~kggvgkst~~~~la~~l~~~g~~v~~----~d~di------~gps----i--p~~~rGp~~~~~i~q~l----- 60 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGL----LDADI------YGPS----I--PKMWRGPMKMGAIKQFL----- 60 (169)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE----EEEEC------CCCC----C--CEEEECHHHHHHHHHHH-----
T ss_conf 89974999881999999999999987997899----97137------9997----5--50120473899999999-----
Q ss_pred HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 788642232887999227655566767530899999747-9448970577650457999999998479907999976977
Q gi|254780487|r 85 PATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDS 163 (217)
Q Consensus 85 ~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~ 163 (217)
....-.+.|++||.-.-|..+. ...++..+. -.+|+|+....-++.++.-+++++++.++++.|+|.|...
T Consensus 61 --~~~~w~~lDyLIID~PPGtgD~------~lt~~~~~~~d~~IvVTTP~~~s~~Da~r~i~~~~~~~i~i~GvVeNMs~ 132 (169)
T cd02037 61 --TDVDWGELDYLVIDMPPGTGDE------HLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSY 132 (169)
T ss_pred --HHCCCCCCCEEEEECCCCCCHH------HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf --8525466788999689998707------78798750567479994695889999999999999759970799987966
Q ss_pred C--C-----------CHHHHHHHHCCCCEEEEECCC
Q ss_conf 8--0-----------059999986199899994788
Q gi|254780487|r 164 M--P-----------KVEETIVKIGRIPHLGRLPKI 186 (217)
Q Consensus 164 ~--~-----------~~~~~le~~~~ipvLG~iP~~ 186 (217)
. + ...+.+.+..++|+||.||..
T Consensus 133 ~~c~~c~~~~~ifg~~~~~~la~~~~i~~Lg~IP~d 168 (169)
T cd02037 133 FVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLD 168 (169)
T ss_pred CCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCC
T ss_conf 607999973527888449999999599989872899
No 26
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=98.93 E-value=1.1e-08 Score=73.88 Aligned_cols=156 Identities=13% Similarity=0.128 Sum_probs=106.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC----------CEECCCCCCCH-----HHHHHHHHCCCCC----CC-CCC
Q ss_conf 3299983589874799999999998404861----------20138873806-----8999998557873----11-443
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK----------PIQSGMYEETD-----SKTIHRIGRIPKS----HI-IPE 62 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K----------Pv~~G~~~~~D-----~~~~~~~~~~~~~----~~-~~~ 62 (217)
|.|.||.-.++.|||++|+-++.+|-++||| |++.|.....+ ..++.....+... .. .-.
T Consensus 20 K~l~itS~~~~eGKsT~S~NiA~~fAqaGyKTLlIDgD~R~sv~~~~Fk~~n~~~GLtn~L~g~~dl~~~i~~T~isenL 99 (207)
T TIGR01007 20 KVLLITSVKAGEGKSTTSANIAVSFAQAGYKTLLIDGDMRNSVMSGTFKSQNKIKGLTNFLSGNTDLSDAICETNISENL 99 (207)
T ss_pred EEEEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHCCCCCCCC
T ss_conf 58998411058886241078899998568558887546586603678658887656333221454533342026546787
Q ss_pred CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 00145103478899985023507886422328879992276555667675308999997479448970577650457999
Q gi|254780487|r 63 KWKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLL 142 (217)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l 142 (217)
...-..|.+|.-.+.+.......-...+.+.+|++||..+ +..--..|.+...-==.+|||++++.---+..--
T Consensus 100 ~vi~sG~vPPNPt~LL~s~~F~~l~e~~~~~fD~iiiDTP------Pig~V~DAai~a~~~d~~~LV~~A~~~~k~~v~K 173 (207)
T TIGR01007 100 DVITSGPVPPNPTELLQSSNFKTLIETLRKYFDYIIIDTP------PIGTVIDAAIIARAVDASILVTDAGKIKKREVKK 173 (207)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC------CCCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHH
T ss_conf 2751788787754788889999999998716888999518------8666788999998729779887225326467899
Q ss_pred HHHHHHHCCCEEEEEEECCCCC
Q ss_conf 9999984799079999769778
Q gi|254780487|r 143 SLETLRNRNINIIGIAFIGDSM 164 (217)
Q Consensus 143 ~~~~~~~~g~~i~GiIlN~~~~ 164 (217)
+.+.+++-|-+++|||||+...
T Consensus 174 AK~~LEq~G~~~LGvvLNK~d~ 195 (207)
T TIGR01007 174 AKEQLEQAGSKFLGVVLNKVDI 195 (207)
T ss_pred HHHHHHHHCCCEEEEEECCCCC
T ss_conf 9999986178411588888257
No 27
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.91 E-value=1.9e-08 Score=72.30 Aligned_cols=146 Identities=21% Similarity=0.230 Sum_probs=92.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHH--HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9998358987479999999999840486120138873806899--99985578731144300145103478899985023
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKT--IHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI 82 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (217)
|-|+...-|||||++++-|+.+|...++|-..- |.|... +....+... +....
T Consensus 2 Iav~s~KGGVGKTT~a~NLA~aLa~~g~~vllv----D~D~~~~~l~~~~~~~~----------~~~~~----------- 56 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLI----DADLGLRNLDLILGLEN----------RVVYT----------- 56 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE----ECCCCCCCCHHHCCCCC----------CCCCH-----------
T ss_conf 899739998709999999999999779918999----58999998366617655----------66531-----------
Q ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 50788642232887999227655566767530899999747944897057765045799999999847990799997697
Q gi|254780487|r 83 IDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGD 162 (217)
Q Consensus 83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~ 162 (217)
....+ ..|++||....|+.. ........-+ -+++|+....-++..+....+.+++.+.+..|+|+|+.
T Consensus 57 ---~~~vl--~gD~viiD~ppg~~~------~~~~~l~~ad-~vlvv~~p~~~sl~~~~~~~~~~~~~~~~~~~vv~Nr~ 124 (179)
T cd02036 57 ---LHDVL--AGDYILIDSPAGIER------GFITAIAPAD-EALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRV 124 (179)
T ss_pred ---HHCCC--CCCEEEEECCCCCCH------HHHHHHHHCC-CCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf ---31126--699999979999888------9999998468-12563788588999999999999825996469998454
Q ss_pred CCC-----CHHHHHHHHCCCCEEEEECCCC
Q ss_conf 780-----0599999861998999947888
Q gi|254780487|r 163 SMP-----KVEETIVKIGRIPHLGRLPKID 187 (217)
Q Consensus 163 ~~~-----~~~~~le~~~~ipvLG~iP~~~ 187 (217)
... ...+.+++..++|++|.||+..
T Consensus 125 ~~~~~~~~~~~~~~~~~l~~~vlg~IP~d~ 154 (179)
T cd02036 125 RPDMVEGGDMVEDIEEILGVPLLGVIPEDP 154 (179)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCH
T ss_conf 676663677999999855996798877988
No 28
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=98.91 E-value=4.4e-08 Score=70.09 Aligned_cols=180 Identities=13% Similarity=0.065 Sum_probs=101.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHC-------------CCCCCCCCCCCCC-
Q ss_conf 98329998358987479999999999840486120138873806899999855-------------7873114430014-
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGR-------------IPKSHIIPEKWKL- 66 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~-------------~~~~~~~~~~~~~- 66 (217)
|. +|-|-|-+ |||||++|.-|..+|...|.|=.+-|+++-.|......-.. .......+...-+
T Consensus 1 m~-~iaiyGKG-GVGKSTtt~NLaAALA~~GkkVl~IgcDPk~dsT~~L~gg~~~~tvld~l~~~~~~~~ledvi~~g~~ 78 (274)
T PRK13235 1 MR-KVAIYGKG-GIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLQQKTVLDTLREEGEDVELEDIIKEGYG 78 (274)
T ss_pred CC-EEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHEEECCC
T ss_conf 96-79997998-55476789999999997899799989898453667873899899789999862877677894431789
Q ss_pred ----CCCHHHHHHHHHHHCCCHHHHHHH--------HHHCCEEEEECCCCCCCCCCCC---CCHHHHHHHHCCCEEEEEC
Q ss_conf ----510347889998502350788642--------2328879992276555667675---3089999974794489705
Q gi|254780487|r 67 ----RTPASPHLAAEIDGVIIDPATINP--------PDINDSIIIEGIGGLLVPLTTE---YLFIDLIERWQFPIILCAR 131 (217)
Q Consensus 67 ----~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~D~viIEGagg~~~~~~~~---~~~~dla~~l~~~vILV~~ 131 (217)
...-.|.-.....+..+..++..+ ....|++++.-.|.+-.+...- ...+| .|++|+.
T Consensus 79 gi~cveaggp~pg~gcagrgii~~~~~L~~l~~~~~~~~~DyVl~DvLGdvvcggFa~pir~~~A~-------eV~IVts 151 (274)
T PRK13235 79 NTRCTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDGKAE-------EIYIVCS 151 (274)
T ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-------EEEEEEC
T ss_conf 818986899875667576315258999988177543357768998137853124511551006587-------8999916
Q ss_pred CCCCHH---HHHHHHHHHHHH-CCCEEEEEEECCCCCCCHH---HHHHHHCCCCEEEEECCCCCC
Q ss_conf 776504---579999999984-7990799997697780059---999986199899994788888
Q gi|254780487|r 132 TSLGTI---NHSLLSLETLRN-RNINIIGIAFIGDSMPKVE---ETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 132 ~~~g~i---~~~~l~~~~~~~-~g~~i~GiIlN~~~~~~~~---~~le~~~~ipvLG~iP~~~~~ 189 (217)
+.--++ |..+.++..+++ .+.++.|+|+|....+... +.+.+..+.++++.||+...+
T Consensus 152 ~E~~AL~aannI~k~i~~~~~~~~~~l~Gii~N~r~~~~~~~~v~~fa~~~g~~vi~~IPr~~~V 216 (274)
T PRK13235 152 GEMMAMYAANNICKGILKYADAGGVRLGGLICNSRKVDNEREMIEELARKLGTQMIHFVPRDNMV 216 (274)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 83689999999999999997437954889997367787578999999997499369975894588
No 29
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=98.91 E-value=4.5e-08 Score=69.98 Aligned_cols=182 Identities=16% Similarity=0.080 Sum_probs=102.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHH----------HH-C-CC--CCCCCC-C-CCC-
Q ss_conf 329998358987479999999999840486120138873806899999----------85-5-78--731144-3-001-
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHR----------IG-R-IP--KSHIIP-E-KWK- 65 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~----------~~-~-~~--~~~~~~-~-~~~- 65 (217)
|+|-|.|-+ |||||++|.-|..+|...+.|=.+-|+++-.|...... .. . .. .+...+ . .+.
T Consensus 2 ~~iaiyGKG-GVGKSTTt~NLaAALA~~GkkVL~IgcDPk~dsT~~l~gg~~~~tvld~l~~~~~~~~~l~~v~~~g~~g 80 (273)
T PRK13232 2 RQIAIYGKG-GIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFGD 80 (273)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHEEECCCCC
T ss_conf 579997998-6658878999999999779969998978844277788589988879999986185656366615428897
Q ss_pred --CCCCHHHHHHHHHHHCCCH------HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf --4510347889998502350------78864223288799922765556676753089999974794489705776504
Q gi|254780487|r 66 --LRTPASPHLAAEIDGVIID------PATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTI 137 (217)
Q Consensus 66 --~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i 137 (217)
....-.|.......+..+. ..+.....++|+++++-.|++-.+...-- +...+--.|++|+.+..-++
T Consensus 81 v~cve~ggp~~g~gcagrgii~~~~lle~l~~~~~~~Dyvl~Dvlgdvvcggfa~P----~~~~~A~evlIVts~E~~sl 156 (273)
T PRK13232 81 IKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMP----IREGKAKEIYIVASGELMAI 156 (273)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCC----CCCCCCCEEEEEECCCHHHH
T ss_conf 38986899876765453047888889997083214798899941473323653144----20165768999807608889
Q ss_pred ---HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH---HHHHCCCCEEEEECCCCCC
Q ss_conf ---579999999984799079999769778005999---9986199899994788888
Q gi|254780487|r 138 ---NHSLLSLETLRNRNINIIGIAFIGDSMPKVEET---IVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 138 ---~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~~~~---le~~~~ipvLG~iP~~~~~ 189 (217)
|+..-.+..+.+.+.++.|+|.|+...+...+. +.+..+.++++.||+...+
T Consensus 157 yaannI~k~i~~~~~~~~rl~GiI~n~r~~~~~~e~v~~fa~~~g~~vi~~IPr~~~v 214 (273)
T PRK13232 157 YAANNICKGLAKFAKGGARLGGIICNSRNVDGERELLEAFAKKLGSQLIHFVPRDNIV 214 (273)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 9999999999999621885014885055776389999999997199669978997788
No 30
>PRK11670 putative ATPase; Provisional
Probab=98.91 E-value=1.8e-08 Score=72.43 Aligned_cols=174 Identities=14% Similarity=0.020 Sum_probs=96.8
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH--HHHHHHCCCC------CCCCCCCC---------
Q ss_conf 832999835898747999999999984048612013887380689--9999855787------31144300---------
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK--TIHRIGRIPK------SHIIPEKW--------- 64 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~--~~~~~~~~~~------~~~~~~~~--------- 64 (217)
++-|.|+.-.-|||||++|.-|+-+|...|+|-.-- |.|.. .+...++... ....+.|.
T Consensus 107 ~~vIAVaSGKGGVGKSTvavNLA~ALA~~G~kVgll----DADi~Gpsip~mlG~~~~~~~~~d~~~i~P~~~~gi~~~S 182 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL----DADIYGPSIPTMLGAENQRPTSPDGTHMAPIMAHGLATNS 182 (369)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE----ECCCCCCCCCHHHCCCCCCCCCCCCCEECCCCCCCEEEEE
T ss_conf 889999858998889999999999999669937898----2478887650230665456646889663760005812530
Q ss_pred --CCCCCHHHHHHHHHHHCCCHHH-----HHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCCH
Q ss_conf --1451034788999850235078-----8642232887999227655566767530899999747-9448970577650
Q gi|254780487|r 65 --KLRTPASPHLAAEIDGVIIDPA-----TINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-FPIILCARTSLGT 136 (217)
Q Consensus 65 --~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~-~~vILV~~~~~g~ 136 (217)
.+..+..+ .-+.+-....+ ....-.+.|++||.-.-|..+ ..++ ++..+. ..+|+|+....-+
T Consensus 183 ~g~l~~~~~~---~iwRgp~~~~al~q~l~~~~wg~lDyLIID~PPGtgD---i~Lt---l~q~v~~~gavvVTTPq~~A 253 (369)
T PRK11670 183 IGYLVTDDNA---MVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGD---IQLT---LAQNIPVTGAVVVTTPQDIA 253 (369)
T ss_pred CCCCCCCCCC---HHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH---HHHH---HHHHCCCCEEEEECCCCHHH
T ss_conf 2202376640---2221301679999987774337888899837998752---7778---87645766079962773769
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCC-------CC------CHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 457999999998479907999976977-------80------05999998619989999478888
Q gi|254780487|r 137 INHSLLSLETLRNRNINIIGIAFIGDS-------MP------KVEETIVKIGRIPHLGRLPKIDP 188 (217)
Q Consensus 137 i~~~~l~~~~~~~~g~~i~GiIlN~~~-------~~------~~~~~le~~~~ipvLG~iP~~~~ 188 (217)
+.++.-.+.++++.++++.|+|-|... .. ...+.+.+..++|+||.||..+.
T Consensus 254 l~Da~k~i~m~~k~~vpilGiVeNMs~~~c~~c~~~~~iFg~gg~e~~a~~~~v~lLG~IP~d~~ 318 (369)
T PRK11670 254 LIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHIS 318 (369)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCEEEECCCCHH
T ss_conf 99999999999854888506886363333689997100136660999999839987997989889
No 31
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=98.90 E-value=1.3e-07 Score=67.16 Aligned_cols=157 Identities=17% Similarity=0.102 Sum_probs=91.4
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC----------CEECCC-CCCCHHHHHHHHHCCCC------CCCCCCCC
Q ss_conf 83299983589874799999999998404861----------201388-73806899999855787------31144300
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWK----------PIQSGM-YEETDSKTIHRIGRIPK------SHIIPEKW 64 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K----------Pv~~G~-~~~~D~~~~~~~~~~~~------~~~~~~~~ 64 (217)
.|.|+||++.+|-|||++++.|++.+-..|-| |-.... .......+..-+.+... +....+..
T Consensus 531 ~kvi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~~~ld 610 (726)
T PRK09841 531 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFD 610 (726)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCHHHHCCCCCCCCEE
T ss_conf 86899977999997799999999999847995999828877710776159999987799838999889933027989989
Q ss_pred CC-CCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Q ss_conf 14-51034788999850235078864223288799922765556676753089999974794489705776504579999
Q gi|254780487|r 65 KL-RTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLS 143 (217)
Q Consensus 65 ~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~ 143 (217)
.. ..+..|+-..-+...........+.+.||+|||+.+- ....+.+-+...+==-+++|++.+........-+
T Consensus 611 vl~aG~~p~nP~elL~s~~~~~ll~~l~~~yD~IIiDtPP------vl~v~Da~~l~~~~D~~l~Vvr~g~T~~~~~~~a 684 (726)
T PRK09841 611 VITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPP------MLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLS 684 (726)
T ss_pred EEECCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCC------CCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHH
T ss_conf 9828999979899958769999999998139999991999------6534159999997895999997996889999999
Q ss_pred HHHHHHCCCEEEEEEECCCCC
Q ss_conf 999984799079999769778
Q gi|254780487|r 144 LETLRNRNINIIGIAFIGDSM 164 (217)
Q Consensus 144 ~~~~~~~g~~i~GiIlN~~~~ 164 (217)
++.+++.|.++.|+|+|+...
T Consensus 685 ~~~l~~~~~~v~G~vlN~v~~ 705 (726)
T PRK09841 685 MQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred HHHHHHCCCCEEEEEECCCCC
T ss_conf 999997899758999828865
No 32
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=98.87 E-value=2.8e-07 Score=65.05 Aligned_cols=175 Identities=11% Similarity=0.059 Sum_probs=103.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC---------------CC
Q ss_conf 329998358987479999999999840486120138873806899999855787311443001---------------45
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWK---------------LR 67 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~---------------~~ 67 (217)
|+|-|.|-+ |+|||++|.-|..+|-..|.|-.+.||.+-.|......-.....+..+..... |.
T Consensus 5 r~IAiYGKG-GIGKSTtssNlsAAlA~~G~rVl~IGCDPK~DSTr~Llgg~~~~Tvld~~~~~~~~ed~~ledvv~~G~~ 83 (293)
T PRK13234 5 RQIAFYGKG-GIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGYK 83 (293)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCC
T ss_conf 579997798-4458778999999999779969997489831656876289999708899876498121538789743779
Q ss_pred CC-----HHHHHHHHHHHCCCHHHHHHH-----HHHCCEEEEECCCC-----CCCCCCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf 10-----347889998502350788642-----23288799922765-----5566767530899999747944897057
Q gi|254780487|r 68 TP-----ASPHLAAEIDGVIIDPATINP-----PDINDSIIIEGIGG-----LLVPLTTEYLFIDLIERWQFPIILCART 132 (217)
Q Consensus 68 ~~-----~~~~~~~~~~~~~i~~~~~~~-----~~~~D~viIEGagg-----~~~~~~~~~~~~dla~~l~~~vILV~~~ 132 (217)
.. =-|.-.....+.-+..++..+ .++.|+++-.-.|. ...|+.. ..++ .|++|++.
T Consensus 84 gI~CVEsGGPePGvGCAGRGIitai~~Le~lga~ed~D~V~yDVLGDVVCGGFAmPir~--g~A~-------evyIVtSg 154 (293)
T PRK13234 84 GIKCVESGGPEPGVGCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRE--NKAQ-------EIYIVMSG 154 (293)
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCC--CCCC-------EEEEEECC
T ss_conf 84897689989988877713146788887718765799999956776651475566545--8876-------89999467
Q ss_pred CCCHHHH---HHHHHHHHH-HCCCEEEEEEECCCCCCCHHHHHHH---HCCCCEEEEECCCC
Q ss_conf 7650457---999999998-4799079999769778005999998---61998999947888
Q gi|254780487|r 133 SLGTINH---SLLSLETLR-NRNINIIGIAFIGDSMPKVEETIVK---IGRIPHLGRLPKID 187 (217)
Q Consensus 133 ~~g~i~~---~~l~~~~~~-~~g~~i~GiIlN~~~~~~~~~~le~---~~~ipvLG~iP~~~ 187 (217)
...++.. ...++..+. +.+.++.|+|.|+-+.+...+.+++ .++.|+++.||+..
T Consensus 155 e~mslyAANnI~~~i~~~~~~g~~rlgGlI~N~r~~~~e~~~v~~fa~~~gt~ii~~IPrs~ 216 (293)
T PRK13234 155 EMMALYAANNIAKGILKYANSGGVRLGGLICNERQTDRELELAEALAKRLGSKLIHFVPRDN 216 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCH
T ss_conf 18799999999999999863269624689971789853799999999984993799779968
No 33
>PRK11519 tyrosine kinase; Provisional
Probab=98.83 E-value=2.7e-07 Score=65.07 Aligned_cols=153 Identities=14% Similarity=0.105 Sum_probs=91.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC----------CEEC---CCCCCCHHHHHHHHHCCCC------CCCCCCC
Q ss_conf 3299983589874799999999998404861----------2013---8873806899999855787------3114430
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK----------PIQS---GMYEETDSKTIHRIGRIPK------SHIIPEK 63 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K----------Pv~~---G~~~~~D~~~~~~~~~~~~------~~~~~~~ 63 (217)
|.|+||++.+|-|||++++.|++.+-..|-| |-.+ |... ...+...+.+... +....+.
T Consensus 527 ~vi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~--~~GLs~~L~g~~~~~~~i~~~~~~~l 604 (720)
T PRK11519 527 NVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNN--VNGLSEILIGQGDITTAAKPTSIANF 604 (720)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCC--CCCHHHHCCCCCCHHHHCCCCCCCCE
T ss_conf 6799970899997899999999999837991999938777701677539999--99859980799978997035798998
Q ss_pred CCC-CCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 014-5103478899985023507886422328879992276555667675308999997479448970577650457999
Q gi|254780487|r 64 WKL-RTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLL 142 (217)
Q Consensus 64 ~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l 142 (217)
... ..+..|+-...+........+..+.+.||+|||+.+- ....+.+-+...+==-+++|++.+........-
T Consensus 605 ~vl~~G~~~pnp~elL~s~~~~~ll~~l~~~yD~IIiDtpP------v~~v~Da~~la~~aD~~l~Vvr~g~t~~~~v~~ 678 (720)
T PRK11519 605 DLIPRGQVPPNPSELLMSERFAELVAWASKNYDLVLIDTPP------ILAVTDAAIVGRHVGTTLMVARYAVNTLKEVET 678 (720)
T ss_pred EEECCCCCCCCHHHHHCCHHHHHHHHHHHHHCCEEEEECCC------CCCCHHHHHHHHHCCEEEEEEECCCCCHHHHHH
T ss_conf 99769999949899838759999999998529999993999------652358999999789799999899578999999
Q ss_pred HHHHHHHCCCEEEEEEECCCC
Q ss_conf 999998479907999976977
Q gi|254780487|r 143 SLETLRNRNINIIGIAFIGDS 163 (217)
Q Consensus 143 ~~~~~~~~g~~i~GiIlN~~~ 163 (217)
+++.+++.|.++.|+|+|+..
T Consensus 679 a~~~l~~~~~~v~G~VlN~v~ 699 (720)
T PRK11519 679 SLSRFEQNGIPVKGVILNSIF 699 (720)
T ss_pred HHHHHHHCCCCEEEEEECCCC
T ss_conf 999999689974899988976
No 34
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=98.81 E-value=8.9e-08 Score=68.13 Aligned_cols=175 Identities=17% Similarity=0.217 Sum_probs=102.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC----CCHHHHH-----
Q ss_conf 2999835898747999999999984048612013887380689999985578731144300145----1034788-----
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLR----TPASPHL----- 74 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----- 74 (217)
+|-|.|-+ |+|||++|+-|..+|...|.|-.+.|+.+..|..... .+...+ ..+..+.-+ ....+..
T Consensus 2 ~iaiyGKG-GIGKSTtsaNlsaaLA~~GkkVl~IGcDpk~DsT~~L--~g~~~~-tvld~l~~~~~~~~~~~~edvi~~G 77 (271)
T CHL00072 2 KIAVYGKG-GIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTL--TGFLIP-TIIDTLQSKDYHYEDVWPEDVIYKG 77 (271)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH--CCCCCC-CHHHHHHHHCCCCCCCCHHHHHHCC
T ss_conf 69997898-5448588999999999879979997899737777400--699888-5999997537873216499998527
Q ss_pred --------------HHHHHHCCCHHHHH---H--HHHHCCEEEEECCCCCCCC-CCCCCCHHHHHHHHCCCEEEEECCCC
Q ss_conf --------------99985023507886---4--2232887999227655566-76753089999974794489705776
Q gi|254780487|r 75 --------------AAEIDGVIIDPATI---N--PPDINDSIIIEGIGGLLVP-LTTEYLFIDLIERWQFPIILCARTSL 134 (217)
Q Consensus 75 --------------~~~~~~~~i~~~~~---~--~~~~~D~viIEGagg~~~~-~~~~~~~~dla~~l~~~vILV~~~~~ 134 (217)
.....+..+..++. + ..+++|+++..-.|++..+ .......+| .+++|++...
T Consensus 78 ~~gi~cvEaGGPepGvGCaGrgi~~~i~lL~~l~~~~d~D~V~yDvlgDVVCGGFa~Pi~~Ad-------~~~iVts~e~ 150 (271)
T CHL00072 78 YGGVDCVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDVILFDVLGDVVCGGFAAPLNYAD-------YCIIITDNGF 150 (271)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC-------EEEEEECCCH
T ss_conf 788466543899988777886519999999973762138889994477655654567500088-------8999956708
Q ss_pred CHHHHH---HHHHHHH-HHCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 504579---9999999-847990799997697780059999986199899994788888
Q gi|254780487|r 135 GTINHS---LLSLETL-RNRNINIIGIAFIGDSMPKVEETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 135 g~i~~~---~l~~~~~-~~~g~~i~GiIlN~~~~~~~~~~le~~~~ipvLG~iP~~~~~ 189 (217)
.++.++ .-.++.. +..+.++.|+|.|+....+..+.+.+.++.+++|.||+.+..
T Consensus 151 malyaANnI~~~i~~~a~~~~~rl~GiI~N~~~~~~~v~~fa~~~g~~~i~~iPrd~~V 209 (271)
T CHL00072 151 DALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLIDKYVEACPMPVLEVLPLIEDI 209 (271)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 89999999999999973046864443652268837899999997399669856871166
No 35
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.78 E-value=2.1e-06 Score=59.55 Aligned_cols=177 Identities=18% Similarity=0.197 Sum_probs=98.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH--HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2999835898747999999999984048612013887380689--99998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK--TIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
.|+.+|- .|+|||+.+.-|++.|+..++||.-..+..+-.+. -++.+... ..+..|......+|-..++
T Consensus 102 vImmvGL-QGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q----~~v~~f~~~~~~~Pv~Iak---- 172 (451)
T COG0541 102 VILMVGL-QGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ----VGVPFFGSGTEKDPVEIAK---- 172 (451)
T ss_pred EEEEEEC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH----CCCCEECCCCCCCHHHHHH----
T ss_conf 8999815-679748689999999997499458985056786899999999986----0985316778899799999----
Q ss_pred CCHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 350788642-232887999227655566767530899999747-944897057765045799999999847990799997
Q gi|254780487|r 82 IIDPATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAF 159 (217)
Q Consensus 82 ~i~~~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIl 159 (217)
.+...+ ...+|++||..||=+...-..-.-..++...++ ..+++|+++-.| .++.-+.+.+.. .+.|-|+|+
T Consensus 173 ---~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G--QdA~~~A~aF~e-~l~itGvIl 246 (451)
T COG0541 173 ---AALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG--QDAVNTAKAFNE-ALGITGVIL 246 (451)
T ss_pred ---HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC--HHHHHHHHHHHH-HCCCCEEEE
T ss_conf ---99999997499889996887330309999999999855398748998764445--678999999866-269864999
Q ss_pred CC-CCCCC--HHHHHHHHCCCCE--EEEECCCCC---CCHHHHH
Q ss_conf 69-77800--5999998619989--999478888---8887999
Q gi|254780487|r 160 IG-DSMPK--VEETIVKIGRIPH--LGRLPKIDP---IDPDVLH 195 (217)
Q Consensus 160 N~-~~~~~--~~~~le~~~~ipv--LG~iP~~~~---~~~~~l~ 195 (217)
.. +...+ .+-.+...||.|+ +|+=-++++ ..|++.+
T Consensus 247 TKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~a 290 (451)
T COG0541 247 TKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFA 290 (451)
T ss_pred ECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 71467876228885699878985997458873547774958899
No 36
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=98.77 E-value=2.6e-07 Score=65.27 Aligned_cols=152 Identities=12% Similarity=0.091 Sum_probs=91.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC----------CEECCCC-CCCHHHHHHHHHCCCCCCCC-------CCCC
Q ss_conf 3299983589874799999999998404861----------2013887-38068999998557873114-------4300
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK----------PIQSGMY-EETDSKTIHRIGRIPKSHII-------PEKW 64 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K----------Pv~~G~~-~~~D~~~~~~~~~~~~~~~~-------~~~~ 64 (217)
|.+-|+++.+|-|||++++-|+-++...|-| |-+.... .+.+..+..-+.+ ..+... .+..
T Consensus 104 ~~LaItS~~pGEGKS~vAaNLA~~~Aq~G~RvLLVDaDLRrP~lh~~f~l~~~~GLs~vL~g-~~~l~~i~~~~~~~nL~ 182 (274)
T TIGR03029 104 KALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAG-RSDLEVITHIPALENLS 182 (274)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCCCCHHHHHCC-CCCHHHEEECCCCCCEE
T ss_conf 38999689999989999999999999679919999588888447797599997687888459-99889905158989978
Q ss_pred CCCCCHHHHHHHH-HHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Q ss_conf 1451034788999-850235078864223288799922765556676753089999974794489705776504579999
Q gi|254780487|r 65 KLRTPASPHLAAE-IDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLS 143 (217)
Q Consensus 65 ~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~ 143 (217)
.......|...++ +...........+.+.||++||+.+- ....+.+.+....=--+++|++.+.....+..-+
T Consensus 183 VLpaG~~ppnP~eLL~s~~~~~ll~~l~~~yD~IIiDTPP------vl~~sDA~ila~~aDg~LlVvR~~~T~~~~l~~a 256 (274)
T TIGR03029 183 VLPAGAIPPNPQELLARPAFTDLLNKVMGDYDVVIVDTPS------AEHSSDAQIVATRARGTLIVSRVNETRLHELTSL 256 (274)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCC------CCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHH
T ss_conf 9969999989799873589999999998409999993898------6554349999986897999996898889999999
Q ss_pred HHHHHHCCCEEEEEEECC
Q ss_conf 999984799079999769
Q gi|254780487|r 144 LETLRNRNINIIGIAFIG 161 (217)
Q Consensus 144 ~~~~~~~g~~i~GiIlN~ 161 (217)
++.+++.|.++.|+|+|+
T Consensus 257 ~~~L~~~g~~VlGvVLNq 274 (274)
T TIGR03029 257 KEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHCCCCEEEEEECC
T ss_conf 999997799668998487
No 37
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=98.77 E-value=2.1e-07 Score=65.75 Aligned_cols=180 Identities=16% Similarity=0.113 Sum_probs=109.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHH-HHHHHCCCCCCEE------CCC-----CCCCHHHHHHHHHCCCCCCCCCCCC----
Q ss_conf 98329998358987479999999-9998404861201------388-----7380689999985578731144300----
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASAL-VHALNAYYWKPIQ------SGM-----YEETDSKTIHRIGRIPKSHIIPEKW---- 64 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L-~~~l~~~~~KPv~------~G~-----~~~~D~~~~~~~~~~~~~~~~~~~~---- 64 (217)
|++.|=|++-.-|+|||++|+.| ...++.++.+=+. .|. ...+....+.+......+..++-..
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~ 80 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQD 80 (262)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHCCCCHHHEEEECCCC
T ss_conf 97899998458875689899869999996489769999658888728888588888550999970778776802315768
Q ss_pred ---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf ---14510347889998502350788642232887999227655566767530899999747944897057765045799
Q gi|254780487|r 65 ---KLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSL 141 (217)
Q Consensus 65 ---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~ 141 (217)
......+.................++...+|++++....|+..+.......+| .+|+|+.....++..++
T Consensus 81 gl~vipg~~~~~~~~~~~~~~~~~~~~~l~~~~D~iliD~~aGl~~~~~~~~~~sd-------~~viVt~pe~~si~~A~ 153 (262)
T COG0455 81 GLYVLPGGSGLEDLAKLDPEDLEDVIKELEELYDYILIDTGAGLSRDTLSFILSSD-------ELVIVTTPEPTSITDAY 153 (262)
T ss_pred CEEEEECCCCHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCC-------CEEEEECCCCCHHHHHH
T ss_conf 98996078876888616988899999998752999999689996688899987368-------17999279852089999
Q ss_pred HHHHHHHHCCCEEEE--EEECCCCCC-CH----HHHHHHHCCCCEEEEECCCC
Q ss_conf 999999847990799--997697780-05----99999861998999947888
Q gi|254780487|r 142 LSLETLRNRNINIIG--IAFIGDSMP-KV----EETIVKIGRIPHLGRLPKID 187 (217)
Q Consensus 142 l~~~~~~~~g~~i~G--iIlN~~~~~-~~----~~~le~~~~ipvLG~iP~~~ 187 (217)
.+++.++..+.+..+ +|+|+.... +. .+..+...++|.+..+|+.+
T Consensus 154 ~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 206 (262)
T COG0455 154 KTIKILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVKQVPVLQVIPFDP 206 (262)
T ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCH
T ss_conf 99999997387643315899703666654678999999997077434715675
No 38
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.77 E-value=1.4e-06 Score=60.59 Aligned_cols=176 Identities=16% Similarity=0.117 Sum_probs=96.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHH--HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 299983589874799999999998404861201388738068--999998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDS--KTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
.|+++|-. |+|||+.++-|++.++..++||.-..+...-.+ .-++.+... ..+..+.-.....|...+.
T Consensus 99 Vim~vGlq-GsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~----~~v~~~~~~~~~dp~~i~~---- 169 (433)
T PRK00771 99 TILLVGLQ-GSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEK----INVPFYGDPKEKDAVKIVK---- 169 (433)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH----CCCCCCCCCCCCCHHHHHH----
T ss_conf 89997378-89789999999999997799467850678836899999999986----3887317889999999999----
Q ss_pred CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 350788642232887999227655566767530899999747-9448970577650457999999998479907999976
Q gi|254780487|r 82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFI 160 (217)
Q Consensus 82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN 160 (217)
.+... .+.+|++||..||-+......-.-..++.+..+ -.++||.++-.| .+++-..+.+.+ .+++-|+|+.
T Consensus 170 ---~a~~~-~k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q~a~~~a~~F~~-~~~i~gvIlT 242 (433)
T PRK00771 170 ---EGLEK-LKKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIG--QQASEQAKAFKE-AVGIGGIIIT 242 (433)
T ss_pred ---HHHHH-HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC--HHHHHHHHHHHH-HCCCCEEEEE
T ss_conf ---99998-4569889997765210409999999999877579768998654422--678999999987-5388737997
Q ss_pred C-CCCCCH--HHHHHHHCCCCEE--EEECCCCC---CCHHHHH
Q ss_conf 9-778005--9999986199899--99478888---8887999
Q gi|254780487|r 161 G-DSMPKV--EETIVKIGRIPHL--GRLPKIDP---IDPDVLH 195 (217)
Q Consensus 161 ~-~~~~~~--~~~le~~~~ipvL--G~iP~~~~---~~~~~l~ 195 (217)
+ +..... .-.+...+|.|+. |+=-.+++ .+|++.+
T Consensus 243 KlDgdarGGaaLSi~~~t~~PI~FiG~GEk~~dle~F~p~r~a 285 (433)
T PRK00771 243 KLDGTAKGGGALSAVAETGAPIKFIGTGETIDDLEPFDPKRFI 285 (433)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf 2567887305421898878995688617872148866808899
No 39
>PRK13236 nitrogenase reductase; Reviewed
Probab=98.76 E-value=6.4e-07 Score=62.78 Aligned_cols=176 Identities=11% Similarity=0.076 Sum_probs=102.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCHH----------
Q ss_conf 32999835898747999999999984048612013887380689999985578731144300145-1034----------
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLR-TPAS---------- 71 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------- 71 (217)
|+|-|-|-+ |+|||+++.-|..+|-..|.|-.|-||.+-.|......-.....+.......... ....
T Consensus 7 k~IAiYGKG-GIGKSTts~NlsAAlA~~G~rVl~IGCDPK~DSTr~Llgg~~~~tvld~~~e~~~~ed~~ledvv~~G~~ 85 (295)
T PRK13236 7 RQIAFYGKG-GIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELEEVMLTGFR 85 (295)
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCC
T ss_conf 189996798-4347578999999999779969997889802667876389999718888876098444548887422658
Q ss_pred ---------HHHHHHHHHCCCHHHHHH-----HHHHCCEEEEECCCC-----CCCCCCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf ---------788999850235078864-----223288799922765-----5566767530899999747944897057
Q gi|254780487|r 72 ---------PHLAAEIDGVIIDPATIN-----PPDINDSIIIEGIGG-----LLVPLTTEYLFIDLIERWQFPIILCART 132 (217)
Q Consensus 72 ---------~~~~~~~~~~~i~~~~~~-----~~~~~D~viIEGagg-----~~~~~~~~~~~~dla~~l~~~vILV~~~ 132 (217)
|.-.....+.-+..++.. +-++.|+++-+-.|. ...|+-.+ .++ .+++|++.
T Consensus 86 Gi~CvEsGGPePGvGCAGRGIitai~lLee~ga~e~~D~V~yDVLGDVVCGGFAmPir~g--~A~-------evyiVtSg 156 (295)
T PRK13236 86 GVRCVESGGPEPGVGCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREG--KAQ-------EIYIVTSG 156 (295)
T ss_pred CCEEEECCCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCC--CCC-------EEEEEECC
T ss_conf 837987899999898888625405667987198556998988505775326754656678--764-------89999568
Q ss_pred CCCHHHH---HHHHHHHHH-HCCCEEEEEEECCCCCCCHHHHHHH---HCCCCEEEEECCCCC
Q ss_conf 7650457---999999998-4799079999769778005999998---619989999478888
Q gi|254780487|r 133 SLGTINH---SLLSLETLR-NRNINIIGIAFIGDSMPKVEETIVK---IGRIPHLGRLPKIDP 188 (217)
Q Consensus 133 ~~g~i~~---~~l~~~~~~-~~g~~i~GiIlN~~~~~~~~~~le~---~~~ipvLG~iP~~~~ 188 (217)
...++.. ...++..+. +.+.++.|+|.|+-+.+...+.+++ .+|.|+++.||+...
T Consensus 157 e~malyAANNI~~~i~~~a~~g~~rlgGiI~N~r~~~~e~~~v~~fa~~~gt~ii~~iPr~~~ 219 (295)
T PRK13236 157 EMMAMYAANNIARGILKYAHTGGVRLGGLICNSRNVDREIELIETLAKRLNTQMIHFVPRDNI 219 (295)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHH
T ss_conf 188999999999999999742697035899607888747999999999819926996578388
No 40
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.76 E-value=2.8e-07 Score=65.06 Aligned_cols=174 Identities=15% Similarity=0.117 Sum_probs=99.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC----------CEEC---CC------CCCCHHHHHHHHHCCC-CCCCCCC
Q ss_conf 3299983589874799999999998404861----------2013---88------7380689999985578-7311443
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK----------PIQS---GM------YEETDSKTIHRIGRIP-KSHIIPE 62 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K----------Pv~~---G~------~~~~D~~~~~~~~~~~-~~~~~~~ 62 (217)
+.|.|+....|+|||+++..|+.++...|.| |-.. |. ....+...+....... .....+.
T Consensus 58 ~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi~ 137 (265)
T COG0489 58 NVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSIL 137 (265)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEE
T ss_conf 18999758998756899999999999639938999674669863554089865565411378711432202665504788
Q ss_pred CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH-CCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 0014510347889998502350788642232-887999227655566767530899999747944897057765045799
Q gi|254780487|r 63 KWKLRTPASPHLAAEIDGVIIDPATINPPDI-NDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSL 141 (217)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~ 141 (217)
+... .+..+. ..+....+.......... +|++||+..-+.. ...+.++..+.--+|+|++.+......+.
T Consensus 138 ~~~~-~p~~~r--~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g------~~d~~i~~~~~~g~viVt~p~~~~~~~v~ 208 (265)
T COG0489 138 PLGP-VPVIPR--GLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTG------DADATVLQRIPDGVVIVTTPGKTALEDVK 208 (265)
T ss_pred ECCC-CCCCCH--HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC------HHHHHHHHHCCCEEEEEECCCCCHHHHHH
T ss_conf 3288-998946--77633899999999745688889996999864------27778875138859999667735599999
Q ss_pred HHHHHHHHCCCEEEEEEECC----CCCC---CHHHHHHHHCCCCEEEEECCCC
Q ss_conf 99999984799079999769----7780---0599999861998999947888
Q gi|254780487|r 142 LSLETLRNRNINIIGIAFIG----DSMP---KVEETIVKIGRIPHLGRLPKID 187 (217)
Q Consensus 142 l~~~~~~~~g~~i~GiIlN~----~~~~---~~~~~le~~~~ipvLG~iP~~~ 187 (217)
-+++.+++.+.++.|+|.|. +... ..+..-+++. |.||.+|...
T Consensus 209 ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~~g~~~~~~~~~~--~~~g~~p~~~ 259 (265)
T COG0489 209 KAIDMLEKAGIPVLGVVENMSYFICPRCGEGGGEKYAERYG--PYLGSIPLDP 259 (265)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHC--CCCCCCCCCH
T ss_conf 99999987499347999668666665557885233566511--1026688674
No 41
>PRK10818 cell division inhibitor MinD; Provisional
Probab=98.75 E-value=1.1e-07 Score=67.53 Aligned_cols=181 Identities=15% Similarity=0.106 Sum_probs=93.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE-------------CCCCCCCHHHHHHHHHCCCCCCCC--C----
Q ss_conf 983299983589874799999999998404861201-------------388738068999998557873114--4----
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ-------------SGMYEETDSKTIHRIGRIPKSHII--P---- 61 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~-------------~G~~~~~D~~~~~~~~~~~~~~~~--~---- 61 (217)
|++-|-|+.-.-|||||+++.-|+.+|...|.|=.. -|...... ..+.+......+... +
T Consensus 1 M~rvIaV~s~KGGVGKTT~avNLA~aLA~~G~kVlliD~D~~~~n~~~~lg~~~~~~-~~~~~vl~g~~~l~~~~i~~~~ 79 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVV-YDFVNVIQGDATLNQALIKDKR 79 (270)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC-CCHHHHHCCCCCHHHHEEECCC
T ss_conf 974999978999841899999999999977996899968999988873457677666-6689883699858890544687
Q ss_pred CCCCCCCCHHHHH-HHHHHHCCCHHHHHHHHH-HCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 3001451034788-999850235078864223-28879992276555667675308999997479448970577650457
Q gi|254780487|r 62 EKWKLRTPASPHL-AAEIDGVIIDPATINPPD-INDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINH 139 (217)
Q Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~ 139 (217)
....+.-|.+... ........+...+..+.+ ++|++||....|+..........+| .+|+|+.+..-++..
T Consensus 80 ~~~l~ilpa~~~~~~~~~~~~~~~~~l~~l~~~~yDyIiID~ppgl~~~~~~al~aad-------~vlvv~tpe~~al~d 152 (270)
T PRK10818 80 TENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFAD-------EAIITTNPEVSSVRD 152 (270)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCC-------EEEEECCCCHHHHHH
T ss_conf 6997997999647675545999999999777659989998899986689999998589-------689973897889987
Q ss_pred HHHHHHHHHH------CCC-EE-EEEEECCCCCCC-------HHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 9999999984------799-07-999976977800-------59999986199899994788888
Q gi|254780487|r 140 SLLSLETLRN------RNI-NI-IGIAFIGDSMPK-------VEETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 140 ~~l~~~~~~~------~g~-~i-~GiIlN~~~~~~-------~~~~le~~~~ipvLG~iP~~~~~ 189 (217)
+.-.+..+.. ++. ++ .++++|+..... ..+.+++..++|++|+||+...+
T Consensus 153 a~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~IP~d~~v 217 (270)
T PRK10818 153 SDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSV 217 (270)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHCCEEEEEECHHHCCHHHHCCHHHHHHHCCCEEEEECCCCHHH
T ss_conf 99999999987776533520100125884245312321100129999973288069980797469
No 42
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=98.74 E-value=1.2e-06 Score=61.09 Aligned_cols=195 Identities=19% Similarity=0.188 Sum_probs=115.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHH--HHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC-CCCCHH---HHHHHH
Q ss_conf 29998358987479999999999--840486120138873806899999855787311443001-451034---788999
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHA--LNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWK-LRTPAS---PHLAAE 77 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~--l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~ 77 (217)
-|+.+|= .|+||||+|.-|+.. ++..+-||.-.+|+.+-.+-..|-.. +. ....+..|. .....+ |---++
T Consensus 104 vilmvGL-QGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~-Lg-~Q~gVpvf~h~~~~~~p~~Pv~ia~ 180 (439)
T TIGR00959 104 VILMVGL-QGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKV-LG-EQVGVPVFAHLGKGQSPDDPVEIAR 180 (439)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHH-HH-HHCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 8997313-7885788999999999998638970340321034789999999-76-7528871100478889887789999
Q ss_pred HHHCCCHHHHHH-HHHHCCEEEEECCCCCCCCCCCCCCHHH---HHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 850235078864-2232887999227655566767530899---999747-94489705776504579999999984799
Q gi|254780487|r 78 IDGVIIDPATIN-PPDINDSIIIEGIGGLLVPLTTEYLFID---LIERWQ-FPIILCARTSLGTINHSLLSLETLRNRNI 152 (217)
Q Consensus 78 ~~~~~i~~~~~~-~~~~~D~viIEGagg~~~~~~~~~~~~d---la~~l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~ 152 (217)
.+... -...+|+|||..||=+.. .+.++.+ +-+.++ ..++||+|+=.| -+++-+...| +..+
T Consensus 181 -------~Al~~Ak~~~~D~vI~DTAGRL~I---D~~LM~EL~~iK~~~nP~EiLlVvDaM~G--QdAvn~A~~F-~e~l 247 (439)
T TIGR00959 181 -------QALEEAKENGFDVVIVDTAGRLQI---DEELMEELAEIKEILNPDEILLVVDAMTG--QDAVNTAKTF-NERL 247 (439)
T ss_pred -------HHHHHHHHCCCCEEEEECCCCHHH---HHHHHHHHHHHHHHHCCCEEEECCHHCCH--HHHHHHHHHH-CCCC
T ss_conf -------999999974897899726751255---59999999999888688705412201021--6999999863-6600
Q ss_pred EEEEEEECC-CCCCCHHH--HHHHHCCCCEE--EEECC---CCCCCHHHHH-------------HHHHHHHHHHHHHHHH
Q ss_conf 079999769-77800599--99986199899--99478---8888887999-------------9999713399999999
Q gi|254780487|r 153 NIIGIAFIG-DSMPKVEE--TIVKIGRIPHL--GRLPK---IDPIDPDVLH-------------QKFQEHFTQSLLQKYF 211 (217)
Q Consensus 153 ~i~GiIlN~-~~~~~~~~--~le~~~~ipvL--G~iP~---~~~~~~~~l~-------------~~~~~~~~~~~l~~~~ 211 (217)
.|-|+|+.+ |..-+.-. -+++.+|.|+. |+=-. ++...||+++ |-.++.+|+...++-+
T Consensus 248 gltG~vltK~DGDaRGGAALS~~~~tg~PIKFiG~GEK~~dLe~FhP~R~A~RILGMGDv~SLvEKA~~~~D~~~a~~~~ 327 (439)
T TIGR00959 248 GLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIEDLEPFHPDRMASRILGMGDVLSLVEKAQEVVDEEEAKKLA 327 (439)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 13547885475660578999999996896188841777233124674789863236552236999999851889999999
Q ss_pred HHH
Q ss_conf 985
Q gi|254780487|r 212 YES 214 (217)
Q Consensus 212 ~~~ 214 (217)
++.
T Consensus 328 ~K~ 330 (439)
T TIGR00959 328 EKM 330 (439)
T ss_pred HHH
T ss_conf 986
No 43
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=98.72 E-value=1.2e-07 Score=67.42 Aligned_cols=179 Identities=18% Similarity=0.149 Sum_probs=106.9
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC----CCCCCCHHH---------HHHHHHCCCCCC--CCCCCCCC
Q ss_conf 832999835898747999999999984048612013----887380689---------999985578731--14430014
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS----GMYEETDSK---------TIHRIGRIPKSH--IIPEKWKL 66 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~----G~~~~~D~~---------~~~~~~~~~~~~--~~~~~~~~ 66 (217)
++.|.||.=.-||||||+|+-|..||-..|.|=+-- | .++=|.. .+-+.....+.. +.+--=++
T Consensus 1 ~~viViTSGKGGVGKTTtTANlG~aLA~lG~kVvliD~DiG-LRNLD~~lGLEnRivYt~vDVveG~C~l~qALikDKr~ 79 (272)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIG-LRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRL 79 (272)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC-CHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 95899981788977358989999999961982899954757-03457774231035453554324842110010012675
Q ss_pred CCCHHHHHHHHH-HHC-----CCHHHHHHHHHH--CCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 510347889998-502-----350788642232--887999227655566767530899999747944897057765045
Q gi|254780487|r 67 RTPASPHLAAEI-DGV-----IIDPATINPPDI--NDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTIN 138 (217)
Q Consensus 67 ~~~~~~~~~~~~-~~~-----~i~~~~~~~~~~--~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~ 138 (217)
. ...---+++. +.. +.......+.++ +|++||...-|+-.|.-.--.-|| ..|.|+.....++-
T Consensus 80 ~-NL~LLpAsQ~rdK~~~~~E~~~~lv~~Lk~~~~FDYviIDcPAGIE~GF~nAv~~Ad-------~AiVVttPEvsavR 151 (272)
T TIGR01968 80 E-NLYLLPASQTRDKDAVTPEQMKKLVNELKEEEHFDYVIIDCPAGIESGFRNAVAPAD-------EAIVVTTPEVSAVR 151 (272)
T ss_pred H-HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCC-------EEEEEECCCCCCHH
T ss_conf 2-356636530236134697789999999854379307997378774356899875268-------35898778745100
Q ss_pred HHHHHHHHHHHCC-CEE------EEEEECCCCCCCHH-------HHHHHHCCCCEEEEECCCCCC
Q ss_conf 7999999998479-907------99997697780059-------999986199899994788888
Q gi|254780487|r 139 HSLLSLETLRNRN-INI------IGIAFIGDSMPKVE-------ETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 139 ~~~l~~~~~~~~g-~~i------~GiIlN~~~~~~~~-------~~le~~~~ipvLG~iP~~~~~ 189 (217)
++==-+..+...+ +.= .-+|+|+..++... +.+.+...||++|+||..+.+
T Consensus 152 DADRvIGlLea~~~i~~~GEE~~~~LivNR~rP~mV~~G~Mlsi~Dv~~~L~i~LiGviPeD~~i 216 (272)
T TIGR01968 152 DADRVIGLLEAKGNIEEKGEEVKIKLIVNRLRPEMVKKGDMLSIDDVLEILSIPLIGVIPEDEEI 216 (272)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCE
T ss_conf 25567524212455445776464347785156477416898278999986088616863299865
No 44
>PRK10867 signal recognition particle protein; Provisional
Probab=98.72 E-value=4.9e-06 Score=57.24 Aligned_cols=196 Identities=13% Similarity=0.162 Sum_probs=101.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE-ECCC--CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 29998358987479999999999840486120-1388--73806899999855787311443001451034788999850
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI-QSGM--YEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG 80 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv-~~G~--~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
.|+++|-. |+|||+.++-|++.|+....|+| -..+ .+..=..-++.+.... .+..+.......|...+.
T Consensus 102 VIm~vGLq-GsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~~----~v~~~~~~~~~dp~~ia~--- 173 (453)
T PRK10867 102 VVLMAGLQ-GAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQV----GVDFFPSDVGQKPVDIVN--- 173 (453)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC----CCCEECCCCCCCHHHHHH---
T ss_conf 99997468-8851858999999999738983798558877058999999999851----980436788998899999---
Q ss_pred CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 2350788642232887999227655566767530899999747-944897057765045799999999847990799997
Q gi|254780487|r 81 VIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAF 159 (217)
Q Consensus 81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIl 159 (217)
..+ .....+++|++||..||=+......-....++.+..+ -.++||.++-.| ..++-..+.+.+ .+++-|+|+
T Consensus 174 ~a~---~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q~a~~~a~~F~~-~~~~~gvIl 247 (453)
T PRK10867 174 AAL---KEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG--QDAANTAKAFNE-ALPLTGVVL 247 (453)
T ss_pred HHH---HHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCC--HHHHHHHHHHHH-HCCCCEEEE
T ss_conf 999---99997799999997876012108889999999876378713797432235--668999999998-559870787
Q ss_pred CC-CCCCC--HHHHHHHHCCCCEE--EEECCCCC---CCHHHH-------------HHHHHHHHHHHHHHHHHHH
Q ss_conf 69-77800--59999986199899--99478888---888799-------------9999971339999999998
Q gi|254780487|r 160 IG-DSMPK--VEETIVKIGRIPHL--GRLPKIDP---IDPDVL-------------HQKFQEHFTQSLLQKYFYE 213 (217)
Q Consensus 160 N~-~~~~~--~~~~le~~~~ipvL--G~iP~~~~---~~~~~l-------------~~~~~~~~~~~~l~~~~~~ 213 (217)
.+ +.... ..=.+...+|.|+. |+=-++++ .+|++. .+..++.+++...++..++
T Consensus 248 TKlDgdarGG~alS~~~~t~~PI~FiG~GEk~ddle~F~p~r~asRILGmGDi~~Lvek~~~~~d~~~~~~~~~k 322 (453)
T PRK10867 248 TKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASK 322 (453)
T ss_pred ECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 504678761389899999786967886699824588768489999861898789999999987508899999999
No 45
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=98.71 E-value=1.4e-07 Score=66.92 Aligned_cols=181 Identities=18% Similarity=0.229 Sum_probs=108.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCC-HH----------
Q ss_conf 2999835898747999999999984048612013887380689999985578731144-30014510-34----------
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIP-EKWKLRTP-AS---------- 71 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~-~~~~~~~~-~~---------- 71 (217)
.|=|-|=+ |+||||+|+-|..|+.+.|-|=+|-||.+-.|..|-..- .+.++..++ ....|... ..
T Consensus 2 ~lAvYGKG-GiGKSTTssNLSvA~A~~GkkVlQIGCDPKhDSTFTLtg-~L~PTvidvL~~~~yH~E~v~~eD~iy~GY~ 79 (275)
T TIGR01281 2 ILAVYGKG-GIGKSTTSSNLSVALAKKGKKVLQIGCDPKHDSTFTLTG-KLIPTVIDVLDAVNYHYEDVEPEDVIYTGYG 79 (275)
T ss_pred EEEEECCC-CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC-CCCCCEEEECCCCCCCEEECCCCCEEEECCC
T ss_conf 68886388-877004678999999846991898525788887745447-4167464422567630310333787783468
Q ss_pred ---------HHHHHHHH----HCCCHHH-HHHHHHHCCEEEEECCCCCCCC-CCCCCCHHHHHHHHCCCEEEEECCCCCH
Q ss_conf ---------78899985----0235078-8642232887999227655566-7675308999997479448970577650
Q gi|254780487|r 72 ---------PHLAAEID----GVIIDPA-TINPPDINDSIIIEGIGGLLVP-LTTEYLFIDLIERWQFPIILCARTSLGT 136 (217)
Q Consensus 72 ---------~~~~~~~~----~~~i~~~-~~~~~~~~D~viIEGagg~~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~ 136 (217)
|.--+..= +++++.. -..+-.+||++|-.=.|-+-.+ ....+.-|| -.++|+..+=.+
T Consensus 80 GVd~vEaGGPPAGsGCGGYVVGeTVKLLke~~~~~~yDVilFDVLGDVVCGGFAaPL~YAd-------~aLvva~NDFDa 152 (275)
T TIGR01281 80 GVDCVEAGGPPAGSGCGGYVVGETVKLLKELDVLDEYDVILFDVLGDVVCGGFAAPLQYAD-------YALVVAANDFDA 152 (275)
T ss_pred CEEEEECCCCCCCCCCCCEEECCHHHHHHHCCHHHHCCEEEEEECCCEEECCCCCHHHHHC-------CEEEEECCCCHH
T ss_conf 5688714736898889874715224556652633428979996257555175464112321-------256661077217
Q ss_pred H---HHHHHHHHHH-HH-CCCEEEEEEECCCCCC-----CHHHHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf 4---5799999999-84-7990799997697780-----0599999861998999947888888879
Q gi|254780487|r 137 I---NHSLLSLETL-RN-RNINIIGIAFIGDSMP-----KVEETIVKIGRIPHLGRLPKIDPIDPDV 193 (217)
Q Consensus 137 i---~~~~l~~~~~-~~-~g~~i~GiIlN~~~~~-----~~~~~le~~~~ipvLG~iP~~~~~~~~~ 193 (217)
+ |....++..- ++ +.++++|||-|+.... +.-|...+..+.|+||++|+.+.+..-+
T Consensus 153 lFAANRia~av~~K~~~Gy~vkLAGiIaNR~~~~yGGGtdlle~F~~~~~~~~l~~~P~~d~IR~SR 219 (275)
T TIGR01281 153 LFAANRIAAAVREKAKSGYDVKLAGIIANRVDKEYGGGTDLLEKFAERVGTPVLGVVPRLDEIRRSR 219 (275)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEECCCHHHCCHHH
T ss_conf 8999999999999841797078732663121131178715689999862883220077711102010
No 46
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=98.68 E-value=1.3e-06 Score=60.95 Aligned_cols=162 Identities=22% Similarity=0.297 Sum_probs=93.9
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC--EECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 832999835898747999999999984048612--013887380689999985578731144300145103478899985
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKP--IQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEID 79 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP--v~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (217)
.+++++.||+..+||=++++.|.++++..++|. ++||..- ++. .+ .........+.+.+-..|
T Consensus 113 ~~rvl~vGTDcavGK~tTal~l~~~l~~~Gi~a~fiaTGQTG-----ili--~g--------~Gv~iDav~~DFvaGavE 177 (302)
T pfam07755 113 AKRVLTVGTDCAVGKMTTALELERALRERGLNAAFVATGQTG-----ILI--AG--------YGVPLDAVPADFVAGAVE 177 (302)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCE-----EEE--EC--------CEEEECCCHHHHHHHHHH
T ss_conf 878999605733407899999999999779984799727613-----688--15--------247843224766767899
Q ss_pred HCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECCCC-----------CHHHHHHHHHHHH
Q ss_conf 0235078864223288799922765556676753089999974794-489705776-----------5045799999999
Q gi|254780487|r 80 GVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFP-IILCARTSL-----------GTINHSLLSLETL 147 (217)
Q Consensus 80 ~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~-vILV~~~~~-----------g~i~~~~l~~~~~ 147 (217)
. ......++.|+++|||-|++.-|.+...+.. +..--+.+ +||.-+... -.+...+-.++.+
T Consensus 178 ~-----~v~~~~~~~d~iiIEGQgSL~hP~y~gvsl~-lL~Gs~Pd~lIL~H~p~R~~~~~~~~~~iP~l~~~i~l~e~~ 251 (302)
T pfam07755 178 A-----LVLDAAEEDDWIVIEGQGSLSHPAYSGVTLG-LLHGSQPDALVLCHRPGRKHRRGFPHYPLPPLEEEIELIEAL 251 (302)
T ss_pred H-----HHHHHCCCCCEEEEECCCCCCCCCCCCCCHH-HHCCCCCCEEEEECCCCCCEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 9-----9986454678799916543236656654598-860789986999637898622787668899989999999997
Q ss_pred HHC--CCEEEEEEECCCCCCCH-----HHHHHHHCCCCEEEEECCC
Q ss_conf 847--99079999769778005-----9999986199899994788
Q gi|254780487|r 148 RNR--NINIIGIAFIGDSMPKV-----EETIVKIGRIPHLGRLPKI 186 (217)
Q Consensus 148 ~~~--g~~i~GiIlN~~~~~~~-----~~~le~~~~ipvLG~iP~~ 186 (217)
... +.++.|+-+|....... .+.+++.+++|+. =|..
T Consensus 252 a~~~~~~kvvgIslNt~~l~~~ea~~~~~~~~~~~glPv~--Dp~r 295 (302)
T pfam07755 252 AGTTPPAKVVGISLNTRGLSEAEAREAIERIEEELGLPVT--DPVR 295 (302)
T ss_pred HCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEE--ECCC
T ss_conf 3647997399999557879999999999999999899747--1212
No 47
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=98.67 E-value=3.9e-07 Score=64.11 Aligned_cols=180 Identities=17% Similarity=0.113 Sum_probs=94.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHH----------HHHHH---CCC------------
Q ss_conf 98329998358987479999999999840486120138873806899----------99985---578------------
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKT----------IHRIG---RIP------------ 55 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~----------~~~~~---~~~------------ 55 (217)
|. +|-|.| .-|||||+++.-|+.+|...|.|=..-++++..|+.. +.+.. ...
T Consensus 1 m~-~ia~yG-KGGVGKTTTavNLAaALA~~GkkVLlID~DPqgnaTs~L~~g~~~~tv~d~~~~~~~~~~~l~~~~~~~~ 78 (292)
T PRK13230 1 MK-QIAFYG-KGGIGKSTTVCNLAAALSKSGKKVIVVGCDPKHDCTSNLRGGEDIPTVLDVLREKGIDKLGIETIIRENL 78 (292)
T ss_pred CC-EEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCC
T ss_conf 96-799917-9985789899999999998799599977679775425301598775299999861754222333203244
Q ss_pred CCCCCCCCCCC--------CCCHHHHHHHHHHH-CCCHH--HHHHH-HHHCCEEEEECCCCCCCCCCCCC---CHHHHHH
Q ss_conf 73114430014--------51034788999850-23507--88642-23288799922765556676753---0899999
Q gi|254780487|r 56 KSHIIPEKWKL--------RTPASPHLAAEIDG-VIIDP--ATINP-PDINDSIIIEGIGGLLVPLTTEY---LFIDLIE 120 (217)
Q Consensus 56 ~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~i~~--~~~~~-~~~~D~viIEGagg~~~~~~~~~---~~~dla~ 120 (217)
.....+.+-.+ ..+......+.... ...+. ..... .-.+|+++++-.|.+..+...-. ..+|
T Consensus 79 ~~~~dii~~~~~gv~~ve~g~~~~g~g~~gr~~~~~~~ll~~~~~~~~~~~D~vl~D~lg~~~~~g~~~p~~~~~Ad--- 155 (292)
T PRK13230 79 LKKEDIIYEGFNGIYCVEAGGPKPGYGCAGRGVIVVIDLLKKMNVFEELGVDVVLYDVLGDVVCGGFAMPLRMGLAD--- 155 (292)
T ss_pred CCHHHEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCEEEECCCCCCCCCCCCCCCHHCCCC---
T ss_conf 65232222267862786168987664113147899999999813123308765750343556646421562020189---
Q ss_pred HHCCCEEEEECCC---CCHHHHHHHHHHHHHHC-CCEEEEEEECCCCCC---CHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 7479448970577---65045799999999847-990799997697780---059999986199899994788888
Q gi|254780487|r 121 RWQFPIILCARTS---LGTINHSLLSLETLRNR-NINIIGIAFIGDSMP---KVEETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 121 ~l~~~vILV~~~~---~g~i~~~~l~~~~~~~~-g~~i~GiIlN~~~~~---~~~~~le~~~~ipvLG~iP~~~~~ 189 (217)
.|++|+.+. +.++++.+-+++.++.+ ++++.|+|+|.-... ...+.+.+..+.++++.||+...+
T Consensus 156 ----~VlIp~q~E~~ALeg~~~l~~tI~~~~~~~~~~l~Giv~n~r~~l~~~~vv~e~~~~fg~~v~~~IPrnv~l 227 (292)
T PRK13230 156 ----QIYVVTSSDYMALYAANNICKGIKQFAKRGGSTLGGIIYNVRGSMDAFDIVSEFASKLNTNIIGKVPNSNII 227 (292)
T ss_pred ----EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCHH
T ss_conf ----899972738999999999999999998457975799997089886478999999998299159967996063
No 48
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=98.65 E-value=2.3e-06 Score=59.24 Aligned_cols=183 Identities=13% Similarity=0.084 Sum_probs=87.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC------------CCCCHHH--HHHHHHCCCCCCCCC---CC
Q ss_conf 983299983589874799999999998404861201388------------7380689--999985578731144---30
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM------------YEETDSK--TIHRIGRIPKSHIIP---EK 63 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~------------~~~~D~~--~~~~~~~~~~~~~~~---~~ 63 (217)
|. .|-|+| .-|||||++|.-|+.+|...|.|-.--.. ....+.. .+........+...+ .+
T Consensus 1 ~r-~Iai~G-KGGVGKTTtavNLA~aLa~~GkkVlliDaDpq~~~t~~l~g~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 78 (270)
T cd02040 1 MR-QIAIYG-KGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGF 78 (270)
T ss_pred CC-EEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHEECCC
T ss_conf 95-899979-9857789999999999998799499986579985134652998888289988752777653889613376
Q ss_pred --CCC---CCCHHHHHHHHHH---HCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf --014---5103478899985---02350788642232887999227655566767530899999747944897057765
Q gi|254780487|r 64 --WKL---RTPASPHLAAEID---GVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLG 135 (217)
Q Consensus 64 --~~~---~~~~~~~~~~~~~---~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g 135 (217)
... ..+...-..+..+ ............+++|++||.-.|.+-.+ ...+-+....--.|++|+.+..-
T Consensus 79 ~gv~~ip~~~~~~~~~~~gr~~~~~~~ll~~l~~~~~~~D~iliD~lg~~~~~----~~~~~i~~~~ad~viiv~t~e~~ 154 (270)
T cd02040 79 GGIKCVESGGPEPGVGCAGRGVITAINLLEELGAYEDDLDFVIYDVLGDVVCG----GFAMPIREGKAQEIYIVTSGEMM 154 (270)
T ss_pred CCCEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC----HHHCHHHHCCCCEEEEECCCCHH
T ss_conf 77064105996435121240078899999985434406988998235633321----23230355338879996288189
Q ss_pred HHHH---HHHHHHHHHHC-CCEEEEEEECCCCCCCH---HHHHHHHCCCCEEEEECCCCCC
Q ss_conf 0457---99999999847-99079999769778005---9999986199899994788888
Q gi|254780487|r 136 TINH---SLLSLETLRNR-NINIIGIAFIGDSMPKV---EETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 136 ~i~~---~~l~~~~~~~~-g~~i~GiIlN~~~~~~~---~~~le~~~~ipvLG~iP~~~~~ 189 (217)
++.. .+-++..+++. +..+.|++.|....... .+.+.+..+.++||.||+...+
T Consensus 155 al~~~~~l~k~i~~~~~~~~~~l~gvv~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~d~~v 215 (270)
T cd02040 155 ALYAANNICKGILKYAKSGGVRLGGLICNSRNTDREDELIDAFAKRLGTQMIHFVPRDNVV 215 (270)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCHHH
T ss_conf 9999999999999998346974799983786651378999999998599528777997178
No 49
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=98.65 E-value=2.8e-06 Score=58.76 Aligned_cols=178 Identities=13% Similarity=0.101 Sum_probs=93.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHH-HHHHHHHCCCCCC----CC--CCCCCCCC-------
Q ss_conf 3299983589874799999999998404861201388738068-9999985578731----14--43001451-------
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDS-KTIHRIGRIPKSH----II--PEKWKLRT------- 68 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~-~~~~~~~~~~~~~----~~--~~~~~~~~------- 68 (217)
|-||++|-+ |||||+++++++.++...|.|=.- .+.|+ ..+.+.++..... .. .+.+...-
T Consensus 1 r~i~~~GKG-GVGKTT~AaalA~~lA~~G~kVLl----vstDPahsLsd~f~~~~~~~~~~v~~~~nL~a~eid~~~~~~ 75 (254)
T cd00550 1 RYIFFGGKG-GVGKTTISAATAVRLAEQGKKVLL----VSTDPAHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALE 75 (254)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEE----EECCCCCCHHHHHCCCCCCCCCEECCCCCCEEEEECHHHHHH
T ss_conf 989996898-554899999999999968994999----958986448898488667887110366884578728899999
Q ss_pred -------------CHHHHH----HHHHHHCCCHH--HHH---H--HHHHCCEEEEECCCC--CCCCCCCCCCHHHHHHH-
Q ss_conf -------------034788----99985023507--886---4--223288799922765--55667675308999997-
Q gi|254780487|r 69 -------------PASPHL----AAEIDGVIIDP--ATI---N--PPDINDSIIIEGIGG--LLVPLTTEYLFIDLIER- 121 (217)
Q Consensus 69 -------------~~~~~~----~~~~~~~~i~~--~~~---~--~~~~~D~viIEGagg--~~~~~~~~~~~~dla~~- 121 (217)
...... ......-.++. ++. . ...++|++||..+-. ...-+... ...+++..
T Consensus 76 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~i~~~~~~~~yD~IViDtaPTGhtLrlL~lP-~~l~~~~~~ 154 (254)
T cd00550 76 EYRQEVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLP-TVLSWAREI 154 (254)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCH-HHHHHHHHH
T ss_conf 9999999988632255668888999863985899999999999976069988998899856799875156-999999985
Q ss_pred H----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC------HH-------HHH---HH-HCCCCEE
Q ss_conf 4----79448970577650457999999998479907999976977800------59-------999---98-6199899
Q gi|254780487|r 122 W----QFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPK------VE-------ETI---VK-IGRIPHL 180 (217)
Q Consensus 122 l----~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~------~~-------~~l---e~-~~~ipvL 180 (217)
| ..-+++|+....-++..+.-.+++++..|+++.|+|.|+...+. .+ +++ ++ +.++|+.
T Consensus 155 L~d~~~t~~~lV~~PE~~~v~Et~R~~~~L~~~~i~v~~vvvN~v~p~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~v~ 234 (254)
T cd00550 155 LSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVA 234 (254)
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 37956558999977872169999999999997799989799958808776889999999999999999999870589679
Q ss_pred EEECCCC
Q ss_conf 9947888
Q gi|254780487|r 181 GRLPKID 187 (217)
Q Consensus 181 G~iP~~~ 187 (217)
.+|+++
T Consensus 235 -~vp~~~ 240 (254)
T cd00550 235 -KLPLLP 240 (254)
T ss_pred -EECCCC
T ss_conf -815788
No 50
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=98.58 E-value=1.4e-07 Score=66.96 Aligned_cols=176 Identities=18% Similarity=0.144 Sum_probs=97.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC---CCCCH--------------------HHHHHHHHCCCCC
Q ss_conf 983299983589874799999999998404861201388---73806--------------------8999998557873
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM---YEETD--------------------SKTIHRIGRIPKS 57 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~---~~~~D--------------------~~~~~~~~~~~~~ 57 (217)
|++.|.||.-.-|||||+.|+.|..+|-..|.|-+...+ .++-| ....+.+... ..
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkD-Kr 79 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKD-KR 79 (272)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEEEEEHHHHCCCCCHHHHHHCC-CC
T ss_conf 96499994488876743106778999997398599996676720446664342015654013444766365676403-56
Q ss_pred CCCCCCCCCCCCHHHHHHH-HHHHCCCHHHHHHHH-HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 1144300145103478899-985023507886422-32887999227655566767530899999747944897057765
Q gi|254780487|r 58 HIIPEKWKLRTPASPHLAA-EIDGVIIDPATINPP-DINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLG 135 (217)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g 135 (217)
....+--|+|..... .+...........+. ..+|++|+...-|+-.+...-...|| ..|+|++....
T Consensus 80 ----~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~A~~~Ad-------~AiVVtnPEvS 148 (272)
T COG2894 80 ----LENLFLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKNAVYFAD-------EAIVVTNPEVS 148 (272)
T ss_pred ----CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCC-------EEEEECCCCCC
T ss_conf ----7852661443236722279999999999997669988996484067788886541026-------37997488755
Q ss_pred HHHHHHHHHHHHHHC------CC-EEEEEEECCCCCCCH-------HHHHHHHCCCCEEEEECCCCC
Q ss_conf 045799999999847------99-079999769778005-------999998619989999478888
Q gi|254780487|r 136 TINHSLLSLETLRNR------NI-NIIGIAFIGDSMPKV-------EETIVKIGRIPHLGRLPKIDP 188 (217)
Q Consensus 136 ~i~~~~l~~~~~~~~------g~-~i~GiIlN~~~~~~~-------~~~le~~~~ipvLG~iP~~~~ 188 (217)
++-++=--+..+... +- .-.-+|+|++..... -+.+.+...+|++|+||..++
T Consensus 149 sVRDsDRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~liGiiPed~~ 215 (272)
T COG2894 149 SVRDSDRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPLIGVIPEDQD 215 (272)
T ss_pred CCCCCHHHEEEHHCCCCHHHCCCCCCCEEEEECCCHHHHCCCCCCCHHHHHHHHCCCEEEEECCCHH
T ss_conf 4234112202012145423307766634899716888811577253999999747744776048533
No 51
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=98.58 E-value=2.1e-06 Score=59.51 Aligned_cols=181 Identities=11% Similarity=0.048 Sum_probs=85.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCC---CCHHH-------HHHHHHCCCCCCCC--------CCCCC
Q ss_conf 29998358987479999999999840486120138873---80689-------99998557873114--------43001
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYE---ETDSK-------TIHRIGRIPKSHII--------PEKWK 65 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~---~~D~~-------~~~~~~~~~~~~~~--------~~~~~ 65 (217)
.|-|.|=+ |||||++|+-|+.+|...|.|-..-..+. ..+.. .+.+......+... ..+.-
T Consensus 2 ~iai~GKG-GVGKTTtsvNLA~aLA~~GkrVlliDaD~~~~~~~~llg~~~~~~l~d~l~~~~~~~~~~~~~vi~~~~~g 80 (269)
T pfam00142 2 KIAIYGKG-GIGKSTTSQNTSAALAEMGKKVLIVGCDPKADSTRLILGGKAQPTIIDTLREKGLVEDVELEDVVKKGYGG 80 (269)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHHEECCCCC
T ss_conf 58998999-76889999999999998799099984589987414443898888478776046770224074501337787
Q ss_pred C-CCCHH-HHHHHHHHHCCCHH---HHH--HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 4-51034-78899985023507---886--42232887999227655566767530899999747944897057765045
Q gi|254780487|r 66 L-RTPAS-PHLAAEIDGVIIDP---ATI--NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTIN 138 (217)
Q Consensus 66 ~-~~~~~-~~~~~~~~~~~i~~---~~~--~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~ 138 (217)
. ..+.+ +..........+.. .+. ....++|++||.-.|++..... .+-++...--.|++|+.+.--++.
T Consensus 81 v~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~DyiliD~~g~~~~~~~----~~~i~~~~A~~viiv~t~E~~al~ 156 (269)
T pfam00142 81 IRCVESGGPEPGVGCAGRGVITAIDLLEELGAYDDLDFVLYDVLGDVVCGGF----AMPIREGKAQEVYIVTSGEMMALY 156 (269)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCEEEEECCCCEEECCC----CCCHHHCCCCEEEEEECCCHHHHH
T ss_conf 2688689986563211078999999999821021288898533674024340----053344358879998289478999
Q ss_pred HHH---HHHHH-HHHCCCEEEEEEECCCCCCCHH---HHHHHHCCCCEEEEECCCCCC
Q ss_conf 799---99999-9847990799997697780059---999986199899994788888
Q gi|254780487|r 139 HSL---LSLET-LRNRNINIIGIAFIGDSMPKVE---ETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 139 ~~~---l~~~~-~~~~g~~i~GiIlN~~~~~~~~---~~le~~~~ipvLG~iP~~~~~ 189 (217)
.+. -++.. .++.++++.|++.|+....... +.+.+..++++||.||+...+
T Consensus 157 ~a~~l~~~i~~~~~~~~~~i~giv~n~~~~~~~~~~~~~~~~~~~~~~lg~IP~d~~v 214 (269)
T pfam00142 157 AANNICKGILKYAKSGGVRLGGLICNSRKVDDERELIDAFAEALGTQMIHFVPRDNIV 214 (269)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCHHH
T ss_conf 9999999999985057962789982686541157999999998199479977998268
No 52
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=98.57 E-value=9.7e-07 Score=61.64 Aligned_cols=181 Identities=14% Similarity=0.179 Sum_probs=107.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCC-----------CCC--CCCCCC-
Q ss_conf 329998358987479999999999840486120138873806899999855787311-----------443--001451-
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHI-----------IPE--KWKLRT- 68 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~-----------~~~--~~~~~~- 68 (217)
+.|-|-|-+ |+|||++|.-+..+|-..+.|-.+.||.+-.|......-.....+.. .+. -..+..
T Consensus 32 ~~IAiYGKG-GIGKSTts~NlsAAlA~~GkkVm~IGCDPKaDSTrlLlgG~~~~TVLd~~~~~~~~~e~v~~~dv~~~g~ 110 (329)
T cd02033 32 QIIAIYGKG-GIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCFKRD 110 (329)
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHEEECCC
T ss_conf 499997688-4356168899999999779969997888846033410589888409999987288644342501786259
Q ss_pred ------CHHHHHHHHHHHCCCHHHHHHH------HHHCCEEEEECCCCC-----CCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf ------0347889998502350788642------232887999227655-----56676753089999974794489705
Q gi|254780487|r 69 ------PASPHLAAEIDGVIIDPATINP------PDINDSIIIEGIGGL-----LVPLTTEYLFIDLIERWQFPIILCAR 131 (217)
Q Consensus 69 ------~~~~~~~~~~~~~~i~~~~~~~------~~~~D~viIEGagg~-----~~~~~~~~~~~dla~~l~~~vILV~~ 131 (217)
.--|.-.-...++-+..++..+ ..+.|+++-.-.|.+ ..|+-. ..++ .|++|++
T Consensus 111 Gv~CvEsGGPEPGvGCAGRGIItai~lLe~lg~~~~d~D~V~yDVLGDVVCGGFAmPiR~--g~A~-------evyIVtS 181 (329)
T cd02033 111 GVFAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDWDFDYVLLDFLGDVVCGGFGLPIAR--DMAQ-------KVIVVGS 181 (329)
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECCCCCCCCC--CCCC-------EEEEEEC
T ss_conf 988986679999876788730136678776377525899999922453566463353356--8762-------8999967
Q ss_pred CCCCHH---HHHHHHHHHHHHC-C-CEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf 776504---5799999999847-9-907999976977800599999861998999947888888879
Q gi|254780487|r 132 TSLGTI---NHSLLSLETLRNR-N-INIIGIAFIGDSMPKVEETIVKIGRIPHLGRLPKIDPIDPDV 193 (217)
Q Consensus 132 ~~~g~i---~~~~l~~~~~~~~-g-~~i~GiIlN~~~~~~~~~~le~~~~ipvLG~iP~~~~~~~~~ 193 (217)
....++ |....++..++.. | +++.|+|.|+.......+.+.+..|+|+|..||+.+++..-+
T Consensus 182 gE~MalyAANNI~~~i~~~a~~gg~vrl~GlI~N~~~~~~e~e~fa~~~g~~~l~~vP~d~~iRr~~ 248 (329)
T cd02033 182 NDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTGEAQAFAAHAGIPILAAIPADEELRRKS 248 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf 8088999887899999999863897101159860688724999999971995799637877887654
No 53
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.53 E-value=1.5e-06 Score=60.50 Aligned_cols=92 Identities=23% Similarity=0.266 Sum_probs=73.5
Q ss_pred HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCH-
Q ss_conf 4223288799922765556676753089999974794489705776504579999999984799079999769778005-
Q gi|254780487|r 89 NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPKV- 167 (217)
Q Consensus 89 ~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~- 167 (217)
...+..|.+||.++-|...|.......+| -+|+|+-....++++....++..+..|++ .++|+|+++....
T Consensus 159 ~a~E~~~~~IIDsaaG~gCpVi~sl~~aD-------~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~~~g~s~ 230 (284)
T COG1149 159 HAKELADLLIIDSAAGTGCPVIASLKGAD-------LAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRYNLGDSE 230 (284)
T ss_pred HHHHHCCEEEEECCCCCCCHHHHHHCCCC-------EEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEEECCCCCCHH
T ss_conf 55653212588579978971777641687-------79998168852366899999999983995-49999667777208
Q ss_pred -HHHHHHHCCCCEEEEECCCCCC
Q ss_conf -9999986199899994788888
Q gi|254780487|r 168 -EETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 168 -~~~le~~~~ipvLG~iP~~~~~ 189 (217)
+++. +-.|+|++|.|||.+++
T Consensus 231 ie~~~-~e~gi~il~~IPyd~~i 252 (284)
T COG1149 231 IEEYC-EEEGIPILGEIPYDKDI 252 (284)
T ss_pred HHHHH-HHCCCCEEEECCCCHHH
T ss_conf 99988-87399726878864258
No 54
>PRK10416 cell division protein FtsY; Provisional
Probab=98.51 E-value=1.9e-05 Score=53.55 Aligned_cols=169 Identities=16% Similarity=0.168 Sum_probs=93.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCC--CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2999835898747999999999984048612013887--38068999998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMY--EETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~--~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
-|++.|-+ |+|||+...-|++.|+..+.|++-..+. +..=..-++.+.... .+..+.-.....|- ..-+
T Consensus 297 VIl~vGvN-G~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~~w~~r~----~v~vi~~~~g~Dpa---~V~~- 367 (499)
T PRK10416 297 VILMVGVN-GVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN----NIPVIAQHTGADSA---SVIF- 367 (499)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC----CCEEEECCCCCCHH---HHHH-
T ss_conf 99997478-787898999999999977995378840667568999999984245----73698368999979---9999-
Q ss_pred CCHHHH-HHHHHHCCEEEEECCCCCCCCCCCCCCHHH------HHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 350788-642232887999227655566767530899------99974----7944897057765045799999999847
Q gi|254780487|r 82 IIDPAT-INPPDINDSIIIEGIGGLLVPLTTEYLFID------LIERW----QFPIILCARTSLGTINHSLLSLETLRNR 150 (217)
Q Consensus 82 ~i~~~~-~~~~~~~D~viIEGagg~~~~~~~~~~~~d------la~~l----~~~vILV~~~~~g~i~~~~l~~~~~~~~ 150 (217)
.+. ....+++|++||..+|-+..- ..++-. +++.. ...++||.++..| ..++...+.+. .
T Consensus 368 ---dai~~a~~~~~DvviiDTAGRl~~~---~~LM~EL~ki~rvi~k~~~~aP~e~lLVlDa~tG--Qna~~qak~F~-e 438 (499)
T PRK10416 368 ---DAIQAAKARNVDVLIADTAGRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFH-E 438 (499)
T ss_pred ---HHHHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC--HHHHHHHHHHH-H
T ss_conf ---9999999729998998577643260---9999999999999972378999748999778767--78999999984-4
Q ss_pred CCEEEEEEECCC-CCCC--HHHHHHHHCCCCEE--EEECCCCCCC
Q ss_conf 990799997697-7800--59999986199899--9947888888
Q gi|254780487|r 151 NINIIGIAFIGD-SMPK--VEETIVKIGRIPHL--GRLPKIDPID 190 (217)
Q Consensus 151 g~~i~GiIlN~~-~~~~--~~~~le~~~~ipvL--G~iP~~~~~~ 190 (217)
-++|-|+|+.+. .... ..-.+.+.+++||. |+=-.++++.
T Consensus 439 ~~~ltGiIlTKlDGtAKGG~~lsi~~~~~~PI~fiG~GE~idDL~ 483 (499)
T PRK10416 439 AVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLR 483 (499)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHCC
T ss_conf 279975999656778852599999999883959986798822066
No 55
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=98.50 E-value=5.3e-06 Score=57.01 Aligned_cols=149 Identities=13% Similarity=0.036 Sum_probs=81.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE-----------ECCC-CCCCHHHHHHHHHCCCCCCCC-------CCC
Q ss_conf 329998358987479999999999840486120-----------1388-738068999998557873114-------430
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPI-----------QSGM-YEETDSKTIHRIGRIPKSHII-------PEK 63 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv-----------~~G~-~~~~D~~~~~~~~~~~~~~~~-------~~~ 63 (217)
|.|.||++..|.|||++++.|+.++-..+-|.| .+.. ....+..+.....+...+... .+.
T Consensus 36 kvi~VTS~~pgeGKTtva~nLA~~lA~~~~~~VLLVDaDlr~p~l~~~l~~~~~~Gl~d~L~~~~~~l~~~i~~~~~~~l 115 (207)
T TIGR03018 36 NLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIGRL 115 (207)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHCCCCCCHHHHEECCCCCCE
T ss_conf 09999789999988999999999999724985999953578997100138899998567743899875672342688755
Q ss_pred CCCCC-CHHHHHHHHHHHCCCHHHHHHHHHHCC--EEEEECCCCCCCCCCCCCCHHH-HHHHHCCCEEEEECCCCCHHHH
Q ss_conf 01451-034788999850235078864223288--7999227655566767530899-9997479448970577650457
Q gi|254780487|r 64 WKLRT-PASPHLAAEIDGVIIDPATINPPDIND--SIIIEGIGGLLVPLTTEYLFID-LIERWQFPIILCARTSLGTINH 139 (217)
Q Consensus 64 ~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~D--~viIEGagg~~~~~~~~~~~~d-la~~l~~~vILV~~~~~g~i~~ 139 (217)
..... ...+.....+...........+.+.|| ++||+.+- ......+. ++...+ -+++|++.+......
T Consensus 116 ~vlpag~~~~~~~~ll~s~~~~~li~~lr~~yd~~~VIiDtPP------vl~~~Da~~la~~~D-~vllVvr~~~t~~~~ 188 (207)
T TIGR03018 116 SLLPAGRRHPNPTELLASQRMRSLLHELARRYPDRIIIIDTPP------LLVFSEARALARLVG-QIVLVVEEGRTTQEA 188 (207)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC------CCCCHHHHHHHHHCC-EEEEEEECCCCCHHH
T ss_conf 5751689899667654269999999999973796579983896------223236999999689-699999799878999
Q ss_pred HHHHHHHHHHCCCEEEEEEEC
Q ss_conf 999999998479907999976
Q gi|254780487|r 140 SLLSLETLRNRNINIIGIAFI 160 (217)
Q Consensus 140 ~~l~~~~~~~~g~~i~GiIlN 160 (217)
..-+++.++ +.++.|+|+|
T Consensus 189 v~~a~~~L~--~~~vlG~VlN 207 (207)
T TIGR03018 189 VKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHHC--CCCEEEEEEC
T ss_conf 999999866--8980699969
No 56
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X; InterPro: IPR010246 This entry represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase , . This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or 'iron' protein.; GO: 0005524 ATP binding, 0016628 oxidoreductase activity acting on the CH-CH group of donors NAD or NADP as acceptor, 0051539 4 iron 4 sulfur cluster binding, 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process.
Probab=98.47 E-value=6.5e-06 Score=56.46 Aligned_cols=181 Identities=15% Similarity=0.134 Sum_probs=105.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCC----------------HHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 2999835898747999999999984048612013887380----------------689999985578731144300145
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEET----------------DSKTIHRIGRIPKSHIIPEKWKLR 67 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~----------------D~~~~~~~~~~~~~~~~~~~~~~~ 67 (217)
-|=|.|=+ |+|||++++-|.+.+---+-.=.|-||.+-. |...-.+..+.... ..+.-..|+
T Consensus 2 ~iAiYGKG-G~GKSFtttNLs~~~A~mgkRVL~lGCDPKhDst~~LFGGislPT~~ev~~ekk~agreEe-v~~~dv~Fk 79 (355)
T TIGR02016 2 IIAIYGKG-GIGKSFTTTNLSAKLALMGKRVLQLGCDPKHDSTSALFGGISLPTVIEVFAEKKEAGREEE-VKVSDVVFK 79 (355)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC-EEEEEEEEE
T ss_conf 58897488-9866789899999999746823540578973322213678667508899999865187320-566117872
Q ss_pred CCHH-------------HHHHHHHHHCCCHHHHH------HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEE
Q ss_conf 1034-------------78899985023507886------4223288799922765556676753089999974794489
Q gi|254780487|r 68 TPAS-------------PHLAAEIDGVIIDPATI------NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIIL 128 (217)
Q Consensus 68 ~~~~-------------~~~~~~~~~~~i~~~~~------~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vIL 128 (217)
.... |..-...=++-|..=|. -....-|+||+.=.|-+..+- .-.=+||.|--.||+
T Consensus 80 ~~I~~~~~~vyg~ElGGPeVGRGCGGRGIi~GFd~LEKlG~~~W~~D~vlmDFLGDVVCGG----FatPlaRslaeeVi~ 155 (355)
T TIGR02016 80 RDIMNFAATVYGIELGGPEVGRGCGGRGIIFGFDLLEKLGLFEWELDFVLMDFLGDVVCGG----FATPLARSLAEEVIV 155 (355)
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHEEEECCCCEEECC----CCCHHHHHHHCCEEE
T ss_conf 3368898745788817871155468753101025665527440002000200058677566----443123532024377
Q ss_pred EECCCCCHH---HHHHHHHHHHHHCC--CEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 705776504---57999999998479--907999976977800599999861998999947888888
Q gi|254780487|r 129 CARTSLGTI---NHSLLSLETLRNRN--INIIGIAFIGDSMPKVEETIVKIGRIPHLGRLPKIDPID 190 (217)
Q Consensus 129 V~~~~~g~i---~~~~l~~~~~~~~g--~~i~GiIlN~~~~~~~~~~le~~~~ipvLG~iP~~~~~~ 190 (217)
|++.+++|+ |....+.+|++..| .+++|+|+|++-..=.++...+..+||||..||+...+.
T Consensus 156 ~~sNDrQSly~aNNic~A~~YFr~~GGr~~llGlvvNrDDGsG~A~~fA~~~gipvLa~iP~d~~~R 222 (355)
T TIGR02016 156 VTSNDRQSLYVANNICSAAEYFRKLGGRSKLLGLVVNRDDGSGVAEAFAKEVGIPVLAKIPLDRKVR 222 (355)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCHHC
T ss_conf 6137436888886698899999861886046788986468871898989870993475267650010
No 57
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=6.7e-06 Score=56.38 Aligned_cols=161 Identities=19% Similarity=0.179 Sum_probs=87.4
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE--ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8329998358987479999999999840486120--13887380689999985578731144300145103478899985
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPI--QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEID 79 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv--~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (217)
.+++++.||+.-+||-+++.-|-++++..|+|+. +||..- .+. . +. .+........+.+...+
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtg-----il~--~----~~----gvvvdav~~DfaAGave 212 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTG-----ILI--A----DD----GVVVDAVVMDFAAGAVE 212 (339)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCEE-----EEE--E----CC----CEEECCHHHHHHHHHHH
T ss_conf 768999335632104388999999999709863157607604-----688--5----27----46753036888988888
Q ss_pred HCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEE-EEECCCCC----------HHHHHHHHHHHHH
Q ss_conf 023507886422328879992276555667675308999997479448-97057765----------0457999999998
Q gi|254780487|r 80 GVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPII-LCARTSLG----------TINHSLLSLETLR 148 (217)
Q Consensus 80 ~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vI-LV~~~~~g----------~i~~~~l~~~~~~ 148 (217)
. ..+....+++|+++|||-|++-.|.+ +.+.. +......+++ |+-+.... .+.....-++.+
T Consensus 213 ~----~v~~~~e~~~Dii~VEGQgsl~HP~y-~vtl~-il~gs~PDavvL~H~P~r~~~~g~P~~ip~leevi~l~e~l- 285 (339)
T COG3367 213 S----AVYEAEEKNPDIIFVEGQGSLTHPAY-GVTLG-ILHGSAPDAVVLCHDPNRKYRDGFPEPIPPLEEVIALYELL- 285 (339)
T ss_pred H----HHHHHHHCCCCEEEEECCCCCCCCCC-CCCHH-HHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC-
T ss_conf 8----88876522898799906534347776-52143-30477897699974699752367987689889988999871-
Q ss_pred HCCCEEEEEEECCCC--CCCHHHHH---HHHCCCCEEEEECC
Q ss_conf 479907999976977--80059999---98619989999478
Q gi|254780487|r 149 NRNINIIGIAFIGDS--MPKVEETI---VKIGRIPHLGRLPK 185 (217)
Q Consensus 149 ~~g~~i~GiIlN~~~--~~~~~~~l---e~~~~ipvLG~iP~ 185 (217)
-+.++.|+.+|--+ .+..++.. +..+|+|+...+-+
T Consensus 286 -~~a~Vvgi~lNtr~~dE~~are~~a~l~~efglP~~Dp~~~ 326 (339)
T COG3367 286 -SNAKVVGIALNTRNLDEEEARELCAKLEAEFGLPVTDPLRF 326 (339)
T ss_pred -CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf -67857999924444686889999999864039742263002
No 58
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=98.40 E-value=6.8e-05 Score=50.08 Aligned_cols=74 Identities=9% Similarity=0.110 Sum_probs=51.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC------CH-------HHHHH---H-HCCCCEEEEECCC
Q ss_conf 944897057765045799999999847990799997697780------05-------99999---8-6199899994788
Q gi|254780487|r 124 FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMP------KV-------EETIV---K-IGRIPHLGRLPKI 186 (217)
Q Consensus 124 ~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~------~~-------~~~le---~-~~~ipvLG~iP~~ 186 (217)
.-+++|+....-++..+.-.++.++..|+++.++|+|+...+ .. .++++ + +.++|+. .+|++
T Consensus 207 T~f~lV~~pe~~~i~Et~R~~~~L~~~~i~v~~vvvNrvlp~~~~~~~~~~~r~~~Q~~~L~~i~~~f~~~pi~-~vpl~ 285 (304)
T pfam02374 207 TSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQVLPETEQDCPFCEARKEIQQKYLKEIEELFSDLPVA-KLPLL 285 (304)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE-EECCC
T ss_conf 49999837984379999999999997799889798807788888987999999999999999999865798689-80588
Q ss_pred C-CC-CHHHHHHHH
Q ss_conf 8-88-887999999
Q gi|254780487|r 187 D-PI-DPDVLHQKF 198 (217)
Q Consensus 187 ~-~~-~~~~l~~~~ 198 (217)
+ ++ ..+.|....
T Consensus 286 ~~Ev~G~~aL~~la 299 (304)
T pfam02374 286 PEEVVGLEALEKFS 299 (304)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 88998899999999
No 59
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.39 E-value=8.1e-05 Score=49.61 Aligned_cols=174 Identities=17% Similarity=0.165 Sum_probs=86.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE--ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 29998358987479999999999840486120--1388738068999998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI--QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv--~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
.|+..|- +|+|||+.++-|++.++..+.|+. .+...+..=..-++...... .+..+....+.+....
T Consensus 77 vI~lvG~-~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l----~v~~~~~~~~~~~~~~------ 145 (270)
T PRK06731 77 TIALIGP-TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI----GFEVIAVRDEAAMTRA------ 145 (270)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHH----CCCEECCCCHHHHHHH------
T ss_conf 8999888-9898899999999999867990899983888888999999999981----9953545887899999------
Q ss_pred CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH---HHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 350788642232887999227655566767530899999---74794-48970577650457999999998479907999
Q gi|254780487|r 82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE---RWQFP-IILCARTSLGTINHSLLSLETLRNRNINIIGI 157 (217)
Q Consensus 82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~---~l~~~-vILV~~~~~g~i~~~~l~~~~~~~~g~~i~Gi 157 (217)
.........+|++||..+|-... ....+.++.+ ..+.. ++||.++..+.-+ ..-..+.++ .+++-|+
T Consensus 146 ---~~~~~~~~~~DvilIDTAGR~~~---d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~-~~~~~~~f~--~~~i~gv 216 (270)
T PRK06731 146 ---LTYFKEEARVDYILIDTAGKNYR---ASETVEEMIETMGQVEPDYICLTLSASMKSKD-MIEIITNFK--DIHIDGI 216 (270)
T ss_pred ---HHHHHHHCCCCEEEEECCCCCCC---CHHHHHHHHHHHCCCCCCEEEEEEECCCCHHH-HHHHHHHHC--CCCCCEE
T ss_conf ---99999976999999979998714---69999999998606389879999868777699-999999807--7999889
Q ss_pred EECC-CCCCCHHH--HHHHHCCCCEE--EEECCC----CCCCHHHHHHH
Q ss_conf 9769-77800599--99986199899--994788----88888799999
Q gi|254780487|r 158 AFIG-DSMPKVEE--TIVKIGRIPHL--GRLPKI----DPIDPDVLHQK 197 (217)
Q Consensus 158 IlN~-~~~~~~~~--~le~~~~ipvL--G~iP~~----~~~~~~~l~~~ 197 (217)
|+.+ +.....-. .+...++.|+. |.=..+ +..+++.+++.
T Consensus 217 IlTKlD~ta~gG~als~~~~~~~PI~fig~Ge~VpeDi~~~~~~~la~r 265 (270)
T PRK06731 217 VFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQ 265 (270)
T ss_pred EEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHHHH
T ss_conf 9965358997729999999988597999459997021413799999999
No 60
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=98.38 E-value=7.3e-06 Score=56.15 Aligned_cols=71 Identities=11% Similarity=0.036 Sum_probs=48.9
Q ss_pred HHHCCEEEEECCCCCCCCCCCCCCHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 2328879992276555667675308999997-4794489705776504579999999984799079999769778
Q gi|254780487|r 91 PDINDSIIIEGIGGLLVPLTTEYLFIDLIER-WQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSM 164 (217)
Q Consensus 91 ~~~~D~viIEGagg~~~~~~~~~~~~dla~~-l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~ 164 (217)
..++|++||..+- ++-.-.....+..+. -..-+++|+....-.+..+.-.++.+++.|+++.|+|+|+...
T Consensus 111 ~~~yD~IVvDtpP---TGhtlrlL~~~~L~d~~~t~~~lVt~Pe~~~~~et~r~~~~L~~~gi~v~~vVvN~v~p 182 (217)
T cd02035 111 EGLYDVIVFDTAP---TGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLP 182 (217)
T ss_pred CCCCCEEEECCCC---CHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 4899889982898---55699986788724888767999957762179999999999997799889898958827
No 61
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=98.37 E-value=8.5e-06 Score=55.75 Aligned_cols=179 Identities=13% Similarity=-0.005 Sum_probs=83.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC------------CCCCCCHHHHHHHHHCCCCCCCC-----CCC
Q ss_conf 9832999835898747999999999984048612013------------88738068999998557873114-----430
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS------------GMYEETDSKTIHRIGRIPKSHII-----PEK 63 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~------------G~~~~~D~~~~~~~~~~~~~~~~-----~~~ 63 (217)
|+ .|-|+.-.-|||||++++.|+.+|...|+|-..- |.+.+.+.. +........+... ...
T Consensus 1 Mk-iIav~n~KGGVGKTT~avNLA~~La~~G~rVLlIDlDpQ~~l~~~~g~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ 78 (246)
T TIGR03371 1 MK-VIAIVGIKGGVGRTTLTAALASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDG-WARALLAGEDWRAAAYRSSDG 78 (246)
T ss_pred CE-EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCCCC-HHHHHHCCCCHHHHHEECCCC
T ss_conf 93-9999759998549999999999999689978999759998503224888753456-999982799888952557898
Q ss_pred CCCCCCHH-HHHHHHHHHC-----CCHHHHHHHH-HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 01451034-7889998502-----3507886422-328879992276555667675308999997479448970577650
Q gi|254780487|r 64 WKLRTPAS-PHLAAEIDGV-----IIDPATINPP-DINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGT 136 (217)
Q Consensus 64 ~~~~~~~~-~~~~~~~~~~-----~i~~~~~~~~-~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~ 136 (217)
..+ -|.. .......... ........+. ..+|++||....++. .........-+ .+++++.....+
T Consensus 79 ~~~-ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~l~------~~~~~al~aad-~vlipv~~~~~s 150 (246)
T TIGR03371 79 VLF-LPYGTLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDLPRGPS------PITDQALAAAD-LVLVVVNADAAC 150 (246)
T ss_pred EEE-EECCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC------HHHHHHHHHCC-EEEEEECCCHHH
T ss_conf 289-7089847778987604478999999986303679889994899874------99999999889-479981899899
Q ss_pred HHHHHHHHHHHHHC--CCEEEEEEECCCCCC--CH---HHHHHHHCCCCEE-EEECCCCCC
Q ss_conf 45799999999847--990799997697780--05---9999986199899-994788888
Q gi|254780487|r 137 INHSLLSLETLRNR--NINIIGIAFIGDSMP--KV---EETIVKIGRIPHL-GRLPKIDPI 189 (217)
Q Consensus 137 i~~~~l~~~~~~~~--g~~i~GiIlN~~~~~--~~---~~~le~~~~ipvL-G~iP~~~~~ 189 (217)
.....-....+.+. .....++++|+.... .. .+.+++..+.+++ +.||+...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~I~~~~~v 211 (246)
T TIGR03371 151 YATLHQLALALLARSVPPDGIHYLINQFQPARQLSRDVRAVLRATLGSRLLPMFVHRDEAV 211 (246)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf 9999999999998427767517886302640158999999999974988162268997799
No 62
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.35 E-value=6.1e-06 Score=56.64 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=86.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf 99983589874799999999998404861201388738068999998557873114430014510347889998502350
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIID 84 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 84 (217)
|-|++-..|||||++++-|+.+|...|.|-.- -|.|. +..
T Consensus 2 i~v~sgKgGvGkt~~~~nLa~~la~~G~~vll----~D~D~-------g~a----------------------------- 41 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLL----LDADL-------GLA----------------------------- 41 (139)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE----EECCC-------CCC-----------------------------
T ss_conf 89964999983999999999999978996999----98989-------996-----------------------------
Q ss_pred HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH-HCCCEEEEEEECCCC
Q ss_conf 7886422328879992276555667675308999997479448970577650457999999998-479907999976977
Q gi|254780487|r 85 PATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLR-NRNINIIGIAFIGDS 163 (217)
Q Consensus 85 ~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~-~~g~~i~GiIlN~~~ 163 (217)
.-++|++||....|... ...++...-+ .+++|+.....++.+++..+..+. +.+..-..+|+|+..
T Consensus 42 ------n~~~D~viiD~~aG~~~------~~~~~~~~ad-~~lvV~tpeptSi~DAYalIK~l~~~~~~~~~~lvvN~v~ 108 (139)
T cd02038 42 ------NLDYDYIIIDTGAGISD------NVLDFFLAAD-EVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAE 108 (139)
T ss_pred ------CCCCCEEEEECCCCCCH------HHHHHHHHCC-CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf ------57999999948999877------8999999589-5799958970679999999999999639997599995689
Q ss_pred CCCHH--------HHHHHHCC--CCEEEEEC
Q ss_conf 80059--------99998619--98999947
Q gi|254780487|r 164 MPKVE--------ETIVKIGR--IPHLGRLP 184 (217)
Q Consensus 164 ~~~~~--------~~le~~~~--ipvLG~iP 184 (217)
.+... +..+++.+ ++.+|+||
T Consensus 109 s~~ea~~~~~~l~~v~~kfL~v~l~~lG~IP 139 (139)
T cd02038 109 SPKEGKKVFKRLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCEECC
T ss_conf 9999999999999999998099831071485
No 63
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.35 E-value=4.3e-05 Score=51.36 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=49.0
Q ss_pred HCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-HHHHH
Q ss_conf 28879992276555667675308999997479448970577650457999999998479907999976977800-59999
Q gi|254780487|r 93 INDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPK-VEETI 171 (217)
Q Consensus 93 ~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~-~~~~l 171 (217)
.+|++||..--|+-.=.-.-.-..| -+|.|++...-++-.+--..+..+..|++=.++|+|+..... ...+.
T Consensus 133 ~~e~VivDtEAGiEHfgRg~~~~vD-------~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~e~~~~~~ 205 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRGTIEGVD-------LVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEEEELLREL 205 (255)
T ss_pred CCCEEEEECCCCHHHHCCCCCCCCC-------EEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHH
T ss_conf 6748999633456665656325787-------799995787788888999999998718754999995034115777765
Q ss_pred HHHCCCCEEEEECCCCCC
Q ss_conf 986199899994788888
Q gi|254780487|r 172 VKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 172 e~~~~ipvLG~iP~~~~~ 189 (217)
..-.+.+++|+|||.+.+
T Consensus 206 ~~~~~~~vlg~iP~d~~v 223 (255)
T COG3640 206 AEELGLEVLGVIPYDPEV 223 (255)
T ss_pred HHCCCCEEEEECCCCHHH
T ss_conf 322797489971698788
No 64
>KOG3022 consensus
Probab=98.30 E-value=1.2e-05 Score=54.86 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=98.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE-----CCCCC----CCHHHHHHHHHCCCCCC------CCCCCCCCC
Q ss_conf 3299983589874799999999998404861201-----38873----80689999985578731------144300145
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ-----SGMYE----ETDSKTIHRIGRIPKSH------IIPEKWKLR 67 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~-----~G~~~----~~D~~~~~~~~~~~~~~------~~~~~~~~~ 67 (217)
..|.|+.-.-|||||++|.-|+.+|...++|=.. +|.-- ..+.....+......+. ..+..-.+.
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfLl 127 (300)
T KOG3022 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFLL 127 (300)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCCCEEEECCCCCEEEEECCCEEEEEEEEEC
T ss_conf 58999867887761689999999986179717997503558770534087774455048874144443876788756432
Q ss_pred CCHHHHHHH--HHHHCCCHHHHHHHH-HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 103478899--985023507886422-32887999227655566767530899999747944897057765045799999
Q gi|254780487|r 68 TPASPHLAA--EIDGVIIDPATINPP-DINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSL 144 (217)
Q Consensus 68 ~~~~~~~~~--~~~~~~i~~~~~~~~-~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~ 144 (217)
.+.+...-+ ..-+..+...+.... .+-|++||+..-|..+. -.+..+.++.- .-.|+|+..+.-++.++.-.+
T Consensus 128 ~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDe---hls~~~~~~~~-~gAviVTTPQ~vAl~Dv~K~i 203 (300)
T KOG3022 128 KPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDE---HLSLVQFLRES-DGAVIVTTPQEVALQDVRKEI 203 (300)
T ss_pred CCCCCCCEEECHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHH---HHHEEECCCCC-CCEEEEECCHHHHHHHHHHHH
T ss_conf 88876626545478899999971688777677999589998701---43100004455-734998172055668888650
Q ss_pred HHHHHCCCEEEEEEECCCC-------CC------CHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9998479907999976977-------80------0599999861998999947888
Q gi|254780487|r 145 ETLRNRNINIIGIAFIGDS-------MP------KVEETIVKIGRIPHLGRLPKID 187 (217)
Q Consensus 145 ~~~~~~g~~i~GiIlN~~~-------~~------~~~~~le~~~~ipvLG~iP~~~ 187 (217)
.+++..+++|.|+|=|... .. ...+.+.+..|+|.||.||-.+
T Consensus 204 ~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld~ 259 (300)
T KOG3022 204 DFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPLDP 259 (300)
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHHCCCCEEEECCCCH
T ss_conf 26664598568889625553078878755333676289999872997575067887
No 65
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=98.20 E-value=0.00019 Score=47.35 Aligned_cols=177 Identities=16% Similarity=0.180 Sum_probs=95.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCC----------CCCC--CCCCCCH
Q ss_conf 329998358987479999999999840486120138873806899999855787311----------4430--0145103
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHI----------IPEK--WKLRTPA 70 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~----------~~~~--~~~~~~~ 70 (217)
++|-|-|-+ |+||++++.-+..++...+.|-.+.||.+-.|..+...-.....+.. .+.+ ..+....
T Consensus 2 r~iAiYGKG-GIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~ 80 (278)
T COG1348 2 RQIAIYGKG-GIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFG 80 (278)
T ss_pred CEEEEECCC-CCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHEECCCC
T ss_conf 379996278-7673126778999999729817997479876327777478666569999986186445887782120678
Q ss_pred --------HHHHHHHHHHCCCHHHHH---H---HHHHCCEEEEECCC-----CCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf --------478899985023507886---4---22328879992276-----5556676753089999974794489705
Q gi|254780487|r 71 --------SPHLAAEIDGVIIDPATI---N---PPDINDSIIIEGIG-----GLLVPLTTEYLFIDLIERWQFPIILCAR 131 (217)
Q Consensus 71 --------~~~~~~~~~~~~i~~~~~---~---~~~~~D~viIEGag-----g~~~~~~~~~~~~dla~~l~~~vILV~~ 131 (217)
-|.--....++-+-.+.. + ....-|+++-.=.| |...|+-.++ +| .+.+|++
T Consensus 81 gv~CVEsGGPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPiReg~--Ad-------eiyIVtS 151 (278)
T COG1348 81 GVKCVESGGPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPIREGY--AD-------EIYIVTS 151 (278)
T ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEECCEEEEHHCCC--CC-------EEEEEEC
T ss_conf 53774259989998846511999999999818730128789995357734746000200266--63-------7999956
Q ss_pred CCCCHHHHH---HHHH-HHHHHCCCEEEEEEECCCCCCCHHHHHHH---HCCCCEEEEECCCCCC
Q ss_conf 776504579---9999-99984799079999769778005999998---6199899994788888
Q gi|254780487|r 132 TSLGTINHS---LLSL-ETLRNRNINIIGIAFIGDSMPKVEETIVK---IGRIPHLGRLPKIDPI 189 (217)
Q Consensus 132 ~~~g~i~~~---~l~~-~~~~~~g~~i~GiIlN~~~~~~~~~~le~---~~~ipvLG~iP~~~~~ 189 (217)
...-++..+ .-.+ ++.++.++++.|+|.|+-+...-.+.+++ ..+-|+++.||+.+.+
T Consensus 152 ge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsR~~~~e~e~v~~fa~~igt~li~~vPr~~iv 216 (278)
T COG1348 152 GEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQLIHFVPRDNIV 216 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHH
T ss_conf 83589999889999999987337963145774577764379999999998488527633512788
No 66
>KOG0780 consensus
Probab=98.03 E-value=9.4e-05 Score=49.20 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=92.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
-|++.|- .|+|||++++-|+..+++.|||+--.-.+...-+.+.+-. .......+..|..-....|-..+..-
T Consensus 103 VimfVGL-qG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLk--qnA~k~~iP~ygsyte~dpv~ia~eg---- 175 (483)
T KOG0780 103 VIMFVGL-QGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLK--QNATKARVPFYGSYTEADPVKIASEG---- 175 (483)
T ss_pred EEEEEEC-CCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH--HHHHHHCCEEEECCCCCCHHHHHHHH----
T ss_conf 8999830-5788630089999999846872457760224530689999--87674077068403665558999999----
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC-
Q ss_conf 078864223288799922765556676753089999974794-489705776504579999999984799079999769-
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFP-IILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG- 161 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~-vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~- 161 (217)
...--.+++|++||+.+|-.-..-.....+.++.+.++.+ ||+|.++.-| ++.......-..-+.+-++|+..
T Consensus 176 --v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKl 250 (483)
T KOG0780 176 --VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVGAVILTKL 250 (483)
T ss_pred --HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC---HHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf --998886397289982787301248999999999851598738999856200---767999998877615403799722
Q ss_pred CCCCCHHHH--HHHHCCCCEE--EEECCCCCCC
Q ss_conf 778005999--9986199899--9947888888
Q gi|254780487|r 162 DSMPKVEET--IVKIGRIPHL--GRLPKIDPID 190 (217)
Q Consensus 162 ~~~~~~~~~--le~~~~ipvL--G~iP~~~~~~ 190 (217)
+.+...--. ....|+.||. |+=-++++++
T Consensus 251 DGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE 283 (483)
T KOG0780 251 DGHAKGGGALSAVAATKSPIIFIGTGEHMDDLE 283 (483)
T ss_pred CCCCCCCCEEEEHHHHCCCEEEEECCCCCCCCC
T ss_conf 567777734530354079879981675511157
No 67
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.01 E-value=0.00051 Score=44.60 Aligned_cols=160 Identities=17% Similarity=0.193 Sum_probs=79.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE--ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 29998358987479999999999840486120--1388738068999998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI--QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv--~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
-|+..|. ||||||+..+-|++.++..+.|.. .+...+-.-...++....... +..+....+..+......
T Consensus 2 Vi~lvGp-tGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~----v~~~~~~~~~~~~~~~~~--- 73 (173)
T cd03115 2 VILLVGL-QGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVG----VPVFEEGEGKDPVSIAKR--- 73 (173)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCC----CEEEECCCCCCHHHHHHH---
T ss_conf 9999899-99988999999999999769928999748875779999999999749----859922775587999999---
Q ss_pred CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH---HC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 3507886422328879992276555667675308999997---47-9448970577650457999999998479907999
Q gi|254780487|r 82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIER---WQ-FPIILCARTSLGTINHSLLSLETLRNRNINIIGI 157 (217)
Q Consensus 82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~---l~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~Gi 157 (217)
.......+++|+++|..+|-.. .......++... .+ -.++||.++..+ .++.-....+. ..+++-|+
T Consensus 74 ---~~~~~~~~~~D~IlIDTaGr~~---~d~~~~~el~~l~~~~~p~~~~LVl~a~~~--~~~~~~~~~f~-~~~~~~~~ 144 (173)
T cd03115 74 ---AIEHAREENFDVVIVDTAGRLQ---IDENLMEELKKIKRVVKPDEVLLVVDAMTG--QDAVNQAKAFN-EALGITGV 144 (173)
T ss_pred ---HHHHHHHCCCCEEEEECCCCCC---CCHHHHHHHHHHHHHHCCCCCEEECCCCCH--HHHHHHHHHHH-HCCCCCEE
T ss_conf ---9999875689989997888787---999999999999864489721574246550--65899999987-42799789
Q ss_pred EECCCC-CCCHHH--HHHHHCCCCEE
Q ss_conf 976977-800599--99986199899
Q gi|254780487|r 158 AFIGDS-MPKVEE--TIVKIGRIPHL 180 (217)
Q Consensus 158 IlN~~~-~~~~~~--~le~~~~ipvL 180 (217)
|+.+.- ....-. .+...+++|+.
T Consensus 145 I~TKlDet~~~G~~ls~~~~~~~Pi~ 170 (173)
T cd03115 145 ILTKLDGDARGGAALSIRAVTGKPIK 170 (173)
T ss_pred EEEEECCCCCCCHHHHHHHHHCCCEE
T ss_conf 99714389975799999999890908
No 68
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=97.98 E-value=4.9e-05 Score=50.97 Aligned_cols=170 Identities=14% Similarity=0.146 Sum_probs=95.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
-|+..|= .|+||||.+.-|+.+++++||||--.+. +.=-+.-..+ +..+...+.+++| -...|.+++
T Consensus 123 ViMfVGL-QGaGKTTtctKLA~YYk~rGfK~~lvCA-DTFRAGAFdQ-LkqNA~kA~iPFY----------Gsy~E~DPV 189 (453)
T TIGR01425 123 VIMFVGL-QGAGKTTTCTKLAYYYKRRGFKPALVCA-DTFRAGAFDQ-LKQNATKAKIPFY----------GSYLESDPV 189 (453)
T ss_pred EEEEEEC-CCCCHHHHHHHHHHHHHCCCCCEEEECC-CCCCCCHHHH-HHHHHHHCCCCCC----------CCCCCCCCE
T ss_conf 5888621-4887156687877776326643256517-7542324899-9874764489712----------010489870
Q ss_pred HHHHHH----HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 078864----223288799922765556676753089999974794-489705776504579999999984799079999
Q gi|254780487|r 84 DPATIN----PPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFP-IILCARTSLGTINHSLLSLETLRNRNINIIGIA 158 (217)
Q Consensus 84 ~~~~~~----~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~-vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiI 158 (217)
..|+.- -.+++|++||..+|==--.-.-..-+.++..+.+-+ +|.|-| |+|.+|.-..+-+-....++..||
T Consensus 190 kiA~EGv~~Fk~E~~diIivDTSGRHkQe~~LF~Em~qv~~Ai~Pd~iifVMD---GsIGQAA~~QAkAFK~~~~vGSvI 266 (453)
T TIGR01425 190 KIASEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMVQVAEAIKPDSIIFVMD---GSIGQAAFSQAKAFKDSVEVGSVI 266 (453)
T ss_pred EEECCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEC---CCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 78002011322127847998379873225888899876863349983699806---616678899999863003500388
Q ss_pred ECC-CCCCCHHHHHH--HHCCCCEE--EEECCCCCC
Q ss_conf 769-77800599999--86199899--994788888
Q gi|254780487|r 159 FIG-DSMPKVEETIV--KIGRIPHL--GRLPKIDPI 189 (217)
Q Consensus 159 lN~-~~~~~~~~~le--~~~~ipvL--G~iP~~~~~ 189 (217)
+-+ +.+...-=.|. .-|+-||. |+=-|++++
T Consensus 267 iTKLDGHAkGGGALSAVAATKsPiiFIGTGEhv~d~ 302 (453)
T TIGR01425 267 ITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDDF 302 (453)
T ss_pred EECCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 751567767623788987535977981377502760
No 69
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=0.00099 Score=42.80 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=81.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC--CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 32999835898747999999999984048612013--8873806899999855787311443001451034788999850
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS--GMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG 80 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~--G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
+-|.+.|- +|||||+.++-|++.++..+.|+.-. ...+..=..-++.+.... .+..+....|.+...
T Consensus 207 ~VIaLVGv-nGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rl----gVpV~~~~dpa~l~~------ 275 (407)
T PRK12726 207 RIISLIGQ-TGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKL----DVELIVATSPAELEE------ 275 (407)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH----CCEEEEECCHHHHHH------
T ss_conf 08999899-9897899999999999977991799970667788999999999997----964998188899999------
Q ss_pred CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCC--C--EEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 23507886422328879992276555667675308999997479--4--4897057765045799999999847990799
Q gi|254780487|r 81 VIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQF--P--IILCARTSLGTINHSLLSLETLRNRNINIIG 156 (217)
Q Consensus 81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~--~--vILV~~~~~g~i~~~~l~~~~~~~~g~~i~G 156 (217)
...+....+..|++||..||=.. .....+.++.+..+. | .+||+++..+..+..- .+-+...+++-|
T Consensus 276 ---av~~~a~~~~~DvVIIDTAGRl~---~d~~Lm~EL~ki~~vi~P~~~lLV~dag~~~~~v~q---a~~~~~~v~ItG 346 (407)
T PRK12726 276 ---AVQYMTYVNCVDHILIDTVGRNY---LAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMT---ILPKLAEIPIDG 346 (407)
T ss_pred ---HHHHHHHCCCCCEEEEECCCCCC---CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH---HHHHHCCCCCCE
T ss_conf ---99999862899989996999881---349999999998733289669999367566999999---998704799987
Q ss_pred EEECCC-CCCC--HHHHHHHHCCCCEE
Q ss_conf 997697-7800--59999986199899
Q gi|254780487|r 157 IAFIGD-SMPK--VEETIVKIGRIPHL 180 (217)
Q Consensus 157 iIlN~~-~~~~--~~~~le~~~~ipvL 180 (217)
+|+.+- .... ..=.+...+++|+.
T Consensus 347 iILTKLDgtAKGG~aLSi~~~~~lPI~ 373 (407)
T PRK12726 347 FIITKMDETTRIGDLYTVMQETNLPVL 373 (407)
T ss_pred EEEEECCCCCCCCHHHHHHHHHCCCEE
T ss_conf 999701478985399999999888979
No 70
>PHA02518 ParA-like protein; Provisional
Probab=97.94 E-value=0.00027 Score=46.33 Aligned_cols=158 Identities=11% Similarity=0.052 Sum_probs=81.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH-HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 32999835898747999999999984048612013887380689-99998557873114430014510347889998502
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK-TIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
|-|-|+...-|||||+++.-|+.+|...|+|-.- .|.|++ ....+...........+. . ...+
T Consensus 1 KIIav~n~KGGvGKTT~a~nLA~~la~~G~~Vll----iD~DpQ~s~~~w~~~r~~~~~~~~~-~--~~~~--------- 64 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLL----VDLDPQGSSTDWAEAREEGEPLIPV-V--RMGK--------- 64 (211)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE----EECCCCCCHHHHHHHCCCCCCCCCH-H--HCCH---------
T ss_conf 9899980899974999999999999978994899----9779996788999852268997401-2--1367---------
Q ss_pred CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEE-ECCC---CCHHHHHHHHHHHHH--HCCCEEE
Q ss_conf 350788642232887999227655566767530899999747944897-0577---650457999999998--4799079
Q gi|254780487|r 82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILC-ARTS---LGTINHSLLSLETLR--NRNINII 155 (217)
Q Consensus 82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV-~~~~---~g~i~~~~l~~~~~~--~~g~~i~ 155 (217)
.+......+..+||++||...+.+ +..+.... .-++.+|| +... ..+..+.+-.++..+ +.+.+..
T Consensus 65 ~~~~~l~~~~~~yD~viID~pp~~------~~~~~~al--~aaD~vliP~~ps~~d~~~~~~~~~~i~~~~~~~~~~~~~ 136 (211)
T PHA02518 65 SIRADLPKVASGYDYVVVDGAPQD------SELARAAL--RIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKF 136 (211)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCC------HHHHHHHH--HHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 799999974067888998899974------29999999--9589699963786878999999999999999866567516
Q ss_pred EEEECCCCCCC-----HHHHHHHHCCCCEEE-EECC
Q ss_conf 99976977800-----599999861998999-9478
Q gi|254780487|r 156 GIAFIGDSMPK-----VEETIVKIGRIPHLG-RLPK 185 (217)
Q Consensus 156 GiIlN~~~~~~-----~~~~le~~~~ipvLG-~iP~ 185 (217)
+++.|...... ..+.+++ .++|++- .||+
T Consensus 137 ~~l~~~~~~~~~~~~~~~~~l~~-~~~~v~~t~I~~ 171 (211)
T PHA02518 137 AFIISRAIKNTQLYREARKALAG-YGLPILRNGTTQ 171 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCCCCCCCCCC
T ss_conf 88862358665699999999998-699810681988
No 71
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.93 E-value=0.00083 Score=43.27 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=78.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE--ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 29998358987479999999999840486120--1388738068999998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI--QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv--~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
-|+..|. ||||||+..+-|++.++..+.|.. .+...+..-..-++...... .+..+.......|.....
T Consensus 3 vi~lvGp-tGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l----~v~~~~~~~~~d~~~~~~---- 73 (196)
T pfam00448 3 VILLVGL-QGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERL----GVPVFGSGTGSDPAAVAF---- 73 (196)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHC----CCEEEECCCCCCHHHHHH----
T ss_conf 9999899-9998899999999999977992899975877688999999999863----981781487778789999----
Q ss_pred CCHHHHHH-HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 35078864-223288799922765556676753089999974----7944897057765045799999999847990799
Q gi|254780487|r 82 IIDPATIN-PPDINDSIIIEGIGGLLVPLTTEYLFIDLIERW----QFPIILCARTSLGTINHSLLSLETLRNRNINIIG 156 (217)
Q Consensus 82 ~i~~~~~~-~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l----~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~G 156 (217)
..... ..+++|+++|..+|-.. .......++.... ...++||.++..+. +.+..+..+ ...+++-|
T Consensus 74 ---~~l~~~~~~~~D~IlIDTaGr~~---~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f-~~~~~~~~ 144 (196)
T pfam00448 74 ---DAVEKAKAENYDVVLVDTAGRLQ---NDKNLMDELKKIKRVIAPDEVLLVLDATTGQ--NALNQAKAF-NEAVGITG 144 (196)
T ss_pred ---HHHHHHHHCCCCEEEEECCCCCC---CCHHHHHHHHHHHHHCCCCCEEEEEECCCCC--CHHHHHHHH-HHHCCCCC
T ss_conf ---99999884689999998999874---7677899999998522873028998567782--137899987-60047762
Q ss_pred EEECCCC-CCCHHHH--HHHHCCCCEE
Q ss_conf 9976977-8005999--9986199899
Q gi|254780487|r 157 IAFIGDS-MPKVEET--IVKIGRIPHL 180 (217)
Q Consensus 157 iIlN~~~-~~~~~~~--le~~~~ipvL 180 (217)
+|+.+.- ....-.. +...+++|+.
T Consensus 145 ~I~TKlDet~~~G~~l~~~~~~~~Pi~ 171 (196)
T pfam00448 145 VILTKLDGDAKGGAALSIAAETGKPIK 171 (196)
T ss_pred EEEEEECCCCCCCHHHHHHHHHCCCEE
T ss_conf 688840578875299989999896979
No 72
>COG2403 Predicted GTPase [General function prediction only]
Probab=97.88 E-value=3.4e-05 Score=51.98 Aligned_cols=96 Identities=15% Similarity=0.147 Sum_probs=57.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCC-------CCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 29998358987479999999999840486120138873-------80689999985578731144300145103478899
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYE-------ETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAA 76 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~-------~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (217)
.|-|+||+|++|||.||...+|.++..+|+|+..-.+. +.-++++......... ..+.|...
T Consensus 128 viaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~h-----------a~t~eere 196 (449)
T COG2403 128 VIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRH-----------AATDEERE 196 (449)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCHHHHHHHHCHHHCCCC-----------CCCHHHHH
T ss_conf 5999972366556788899999998669823799557023377310018977377652642-----------25566688
Q ss_pred HHH-----------HCCCHHHHHHHHHHCCEEEEECCCCCCCCCC
Q ss_conf 985-----------0235078864223288799922765556676
Q gi|254780487|r 77 EID-----------GVIIDPATINPPDINDSIIIEGIGGLLVPLT 110 (217)
Q Consensus 77 ~~~-----------~~~i~~~~~~~~~~~D~viIEGagg~~~~~~ 110 (217)
..+ +........+..+.+|++|.||.+.-+-+.-
T Consensus 197 eye~~I~tg~~vlAGvdy~~vlke~~~~aD~IlwdGgnndfPfvk 241 (449)
T COG2403 197 EYESYIPTGGGVLAGVDYGTVLKEGEKEADFILWDGGNNDFPFVK 241 (449)
T ss_pred HHHHCCCCCCCEEEEEEHHHHHHHHHHHCCEEEEECCCCCCCCCC
T ss_conf 787436435534652048999987764155899948887788525
No 73
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=97.87 E-value=0.00022 Score=46.94 Aligned_cols=172 Identities=18% Similarity=0.216 Sum_probs=95.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE-CCC-CCCCHHHHHHHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHH
Q ss_conf 299983589874799999999998404861201-388-738068999998557873114430014-51034788999850
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ-SGM-YEETDSKTIHRIGRIPKSHIIPEKWKL-RTPASPHLAAEIDG 80 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~-~G~-~~~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (217)
-|++.|=+ |+||||.-+-|++.|+..|+|.+- +|- .+=.=..-++.|... .....+.+-.- .-|+|--..
T Consensus 84 Vil~VGVN-G~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA~EQL~~Wa~R-~gv~vi~~~~gn~DPAaV~fD----- 156 (284)
T TIGR00064 84 VILFVGVN-GVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEVWAKR-LGVDVIKQKEGNADPAAVIFD----- 156 (284)
T ss_pred EEEEEEEE-CCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHH-HCCEEEECCCCCCCCHHHHHH-----
T ss_conf 99998440-88601028899999987499089982752479999999998988-387554078898871789999-----
Q ss_pred CCCHHHHHHHHHHCCEEEEECCCCCCCC--CCCCC-CHHHHHH-----HHCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 2350788642232887999227655566--76753-0899999-----74794489705776504579999999984799
Q gi|254780487|r 81 VIIDPATINPPDINDSIIIEGIGGLLVP--LTTEY-LFIDLIE-----RWQFPIILCARTSLGTINHSLLSLETLRNRNI 152 (217)
Q Consensus 81 ~~i~~~~~~~~~~~D~viIEGagg~~~~--~~~~~-~~~dla~-----~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~ 152 (217)
- -....++++|++||..||=+..- +..++ -..++.+ .-...+|||.|+--| +.++.-.+.|.+. +
T Consensus 157 -A---i~~Ak~~niDvvliDTAGRLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVlDAt~G--qna~~QA~~F~ea-v 229 (284)
T TIGR00064 157 -A---IQAAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVLDATTG--QNALEQAKVFNEA-V 229 (284)
T ss_pred -H---HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHH--HHHHHHHHHHHHH-C
T ss_conf -8---9999874997899734754546620399999999987321025787557542202220--3089999998654-0
Q ss_pred EEEEEEECC-CCCCC--HHHHHHHHCCCCEE--EEECCCCCC
Q ss_conf 079999769-77800--59999986199899--994788888
Q gi|254780487|r 153 NIIGIAFIG-DSMPK--VEETIVKIGRIPHL--GRLPKIDPI 189 (217)
Q Consensus 153 ~i~GiIlN~-~~~~~--~~~~le~~~~ipvL--G~iP~~~~~ 189 (217)
++=|+|+-+ +.... ..=.+.+..++||+ |+=-..+++
T Consensus 230 ~ltGiiLTKLDg~AKGG~~l~i~~~l~~Pv~~~G~GE~~dDL 271 (284)
T TIGR00064 230 GLTGIILTKLDGTAKGGIILAIAYELKLPVKFIGVGEKIDDL 271 (284)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 688589963468803789998899857976998548873320
No 74
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=97.85 E-value=0.00016 Score=47.79 Aligned_cols=175 Identities=11% Similarity=-0.044 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC------------CCCCCCHHHHHHHHHCCCCC-CCC--CCCCC
Q ss_conf 9832999835898747999999999984048612013------------88738068999998557873-114--43001
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS------------GMYEETDSKTIHRIGRIPKS-HII--PEKWK 65 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~------------G~~~~~D~~~~~~~~~~~~~-~~~--~~~~~ 65 (217)
|+ .|-|+.-.-|||||++|..|+.+|...|.|-..- |...+..............- ... ..+-.
T Consensus 1 Mk-iIai~s~KGGVGKTT~t~nLa~aLa~~G~rVLlID~Dpq~~l~~~~g~~~~~~~g~~~~~l~~~~~~~~~~~~~~gl 79 (244)
T pfam06564 1 MA-VLALQGVRGGVGTTSLTAALGWALQQLGESVLVIDASPDNLLRLHFNVDFDHSDGWARAELDGRPWRDAALRYTPGL 79 (244)
T ss_pred CE-EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHEEECCCE
T ss_conf 92-99996699986199999999999997799589996898742102358886434414899875997777444526975
Q ss_pred CCCC---HHHHHHHHHHHCC-----CHHHHH--HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 4510---3478899985023-----507886--42232887999227655566767530899999747944897057765
Q gi|254780487|r 66 LRTP---ASPHLAAEIDGVI-----IDPATI--NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLG 135 (217)
Q Consensus 66 ~~~~---~~~~~~~~~~~~~-----i~~~~~--~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g 135 (217)
..-| .+.......+... ...... ....+||++||.-.-|+ +....+....-+ .|++++..+..
T Consensus 80 ~llP~g~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iliD~Pp~l------~~l~~~al~aad-~vLv~v~~d~~ 152 (244)
T pfam06564 80 DLLPFGQLTGAERENLQQLQPDLGAWAQRLQLLKASGQYRWILLDLPQGF------SPLTRQLLELAD-VTLAVVHADAN 152 (244)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC------HHHHHHHHHHCC-CEEEEECCCHH
T ss_conf 89728997478999898654437999998764213578999999799996------899999999769-60899688858
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-----HHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 0457999999998479907999976977800-----59999986199899994788888
Q gi|254780487|r 136 TINHSLLSLETLRNRNINIIGIAFIGDSMPK-----VEETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 136 ~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~-----~~~~le~~~~ipvLG~iP~~~~~ 189 (217)
+ +..+ -++......++++|+..... ..+.+++..+--+..+||+...+
T Consensus 153 s--~~~l----~~~~~~~~~~ilvn~~d~~~~l~~d~~~~~~~~~~~~l~~~I~rd~~l 205 (244)
T pfam06564 153 C--HIRL----HQQALPAGCHLLINDFRIGSQLQDDLYQLWLQSQRRLLPIVVHRDEAM 205 (244)
T ss_pred H--HHHH----HHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHH
T ss_conf 9--9997----323344677488642455768999999999986087257550798829
No 75
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.00028 Score=46.23 Aligned_cols=171 Identities=19% Similarity=0.176 Sum_probs=88.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC-CC-CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2999835898747999999999984048612013-88-738068999998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS-GM-YEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~-G~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
.|++.|.+ |+|||+...-|++.|+..++|.+-+ |. .+-.=..-++.+.... ....+..-.-..|++- -+.
T Consensus 141 Vil~vGVN-G~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~-gv~vI~~~~G~DpAaV------afD 212 (340)
T COG0552 141 VILFVGVN-GVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL-GVPVISGKEGADPAAV------AFD 212 (340)
T ss_pred EEEEEECC-CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHH-CCEEECCCCCCCCHHH------HHH
T ss_conf 99999348-886371799999999978986999823347899999999999995-9927825999980899------999
Q ss_pred CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHH---HHHH--CCC-----EEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 3507886422328879992276555667675308999---9974--794-----48970577650457999999998479
Q gi|254780487|r 82 IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDL---IERW--QFP-----IILCARTSLGTINHSLLSLETLRNRN 151 (217)
Q Consensus 82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dl---a~~l--~~~-----vILV~~~~~g~i~~~~l~~~~~~~~g 151 (217)
- --...++++|++||..||=+..- ..++.++ .+-. ..+ +++|.++-.| +.++.-.+.+...
T Consensus 213 A---i~~Akar~~DvvliDTAGRLhnk---~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~ea- 283 (340)
T COG0552 213 A---IQAAKARGIDVVLIDTAGRLHNK---KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEA- 283 (340)
T ss_pred H---HHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC--HHHHHHHHHHHHH-
T ss_conf 9---99999769999999675544573---6689999999998464568998428999775647--5689999999875-
Q ss_pred CEEEEEEECCCC-CCCH--HHHHHHHCCCCEE--EEECCCCCCCH
Q ss_conf 907999976977-8005--9999986199899--99478888888
Q gi|254780487|r 152 INIIGIAFIGDS-MPKV--EETIVKIGRIPHL--GRLPKIDPIDP 191 (217)
Q Consensus 152 ~~i~GiIlN~~~-~~~~--~~~le~~~~ipvL--G~iP~~~~~~~ 191 (217)
+++-|+|+.+.- .... .-.+.+.+++||+ |+=-..+++.+
T Consensus 284 v~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~ 328 (340)
T COG0552 284 VGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRP 328 (340)
T ss_pred CCCCEEEEEECCCCCCCCEEEEHHHHHCCCEEEEECCCCHHHCCC
T ss_conf 288669997024677762435088886999799857888443200
No 76
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.82 E-value=9.2e-05 Score=49.26 Aligned_cols=96 Identities=19% Similarity=0.138 Sum_probs=62.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
.++++|.+ |||||+++..|++.+...++|-..-.
T Consensus 1 ~i~~~~~k-GvGKTT~a~~La~~la~~g~~Vl~vD--------------------------------------------- 34 (99)
T cd01983 1 VIVVTGKG-GVGKTTLAANLAAALAKRGKRVLLID--------------------------------------------- 34 (99)
T ss_pred CEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEEC---------------------------------------------
T ss_conf 98985899-77689999999999998899699986---------------------------------------------
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHH---HHHHHCCCEEEEEEEC
Q ss_conf 0788642232887999227655566767530899999747944897057765045799999---9998479907999976
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSL---ETLRNRNINIIGIAFI 160 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~---~~~~~~g~~i~GiIlN 160 (217)
|++++|+.++....... ...+....-.++.+.......+....... ......+....++++|
T Consensus 35 -----------d~iiiD~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~n 99 (99)
T cd01983 35 -----------DYVLIDTPPGLGLLVLL----CLLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred -----------CCEEECCCCCCCHHHHH----HHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf -----------71788589988846899----998787589589965984889999999999999841069815788539
No 77
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.003 Score=39.82 Aligned_cols=172 Identities=17% Similarity=0.138 Sum_probs=80.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCC----CCCC--EECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 299983589874799999999998404----8612--0138873806899999855787311443001451034788999
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAY----YWKP--IQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAE 77 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~----~~KP--v~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (217)
-++..|. ||||||++.+-|++.+... +.|. |.+...+-.-..-++..... .-..+....++.....
T Consensus 176 vi~lVGP-TGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~i-------l~vp~~v~~~~~dl~~ 247 (388)
T PRK12723 176 IFILVGP-TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDI-------MGIPVKAIESFKDLKE 247 (388)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHH-------HCCCEEEECCHHHHHH
T ss_conf 8999899-8875787999999999986267677379998078758899999999999-------7880698578899999
Q ss_pred HHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH---HH--CCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8502350788642232887999227655566767530899999---74--794489705776504579999999984799
Q gi|254780487|r 78 IDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE---RW--QFPIILCARTSLGTINHSLLSLETLRNRNI 152 (217)
Q Consensus 78 ~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~---~l--~~~vILV~~~~~g~i~~~~l~~~~~~~~g~ 152 (217)
+. ...+++|+++|..+|-... ......++.. .. +..+.||.++..+.-. ..-.+..+ ..+
T Consensus 248 --------~l-~~~~~~D~IlIDTAGrs~~---d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d-~~~i~~~f--~~~ 312 (388)
T PRK12723 248 --------EI-TQSKDFDLVLIDTIGKSPK---DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD-IKEIFHQF--SPF 312 (388)
T ss_pred --------HH-HHHCCCCEEEEECCCCCCC---CHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-HHHHHHHH--CCC
T ss_conf --------99-9724999999958998856---899999999999741898459999879899999-99999984--279
Q ss_pred EEEEEEECCC-CCCCHH--HHHHHHCCCCEEEE-----ECC-CCCCCHHHHHHHH
Q ss_conf 0799997697-780059--99998619989999-----478-8888887999999
Q gi|254780487|r 153 NIIGIAFIGD-SMPKVE--ETIVKIGRIPHLGR-----LPK-IDPIDPDVLHQKF 198 (217)
Q Consensus 153 ~i~GiIlN~~-~~~~~~--~~le~~~~ipvLG~-----iP~-~~~~~~~~l~~~~ 198 (217)
++.|+|+-+. .....- =.+...++.|+.-+ +|. +...+++.+...+
T Consensus 313 ~~~~~I~TKlDEt~~~G~~l~~~~~~~~Pi~yit~GQ~VPdDie~a~p~~~~~~i 367 (388)
T PRK12723 313 SYKTVIFTKLDETTCVGNLISLIHEMRKEVSYVTDGQIVPHNISIAEPLTFIKKI 367 (388)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 9984999832278986699999999888869993899683020338999999998
No 78
>TIGR01287 nifH nitrogenase iron protein; InterPro: IPR005977 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=97.61 E-value=0.0016 Score=41.46 Aligned_cols=176 Identities=17% Similarity=0.184 Sum_probs=99.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCC-CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCC---------------
Q ss_conf 32999835898747999999999984048-61201388738068999998557873114430014---------------
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYY-WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKL--------------- 66 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~-~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~--------------- 66 (217)
|+|-|-|=+ |+||||++.-+++||...+ .|=...||++-.|......-.....+..++..-.-
T Consensus 1 rqiAiYGKG-GIGKSTT~~N~~AAla~~gdkkVl~~GCDPKaDsTr~l~Gg~~~~TVLd~lre~G~ve~~~~e~v~~~Gf 79 (278)
T TIGR01287 1 RQIAIYGKG-GIGKSTTTQNIAAALAEMGDKKVLVVGCDPKADSTRLLLGGKAQPTVLDVLREKGAVEDVELEDVIKEGF 79 (278)
T ss_pred CEEEEECCC-CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHEECC
T ss_conf 948886278-8670068889999998624955899723885202346517744554899998568711445102200168
Q ss_pred --------CCCHHHHHHHHHHHCCCHHHHHH----HHH-HCCEEEEECCC-----CCCCCCCCCCCHHHHHHHHCCCEEE
Q ss_conf --------51034788999850235078864----223-28879992276-----5556676753089999974794489
Q gi|254780487|r 67 --------RTPASPHLAAEIDGVIIDPATIN----PPD-INDSIIIEGIG-----GLLVPLTTEYLFIDLIERWQFPIIL 128 (217)
Q Consensus 67 --------~~~~~~~~~~~~~~~~i~~~~~~----~~~-~~D~viIEGag-----g~~~~~~~~~~~~dla~~l~~~vIL 128 (217)
=.|..-.-.|. .+.-....+.+ -.+ +-|+|+=.=.| |...|+- ...|| .|.+
T Consensus 80 ~girCVESGGPePGVGCAG-RGvItai~lL~~~g~y~dLdlD~V~YDVLGDVVCGGFAmP~R--~g~A~-------eiYi 149 (278)
T TIGR01287 80 GGIRCVESGGPEPGVGCAG-RGVITAIDLLEELGAYEDLDLDVVIYDVLGDVVCGGFAMPLR--EGLAQ-------EIYI 149 (278)
T ss_pred CCEEEEEECCCCCCCCCCC-CHHEEEEHHHHHCCCCCCCCCCEEEEEECCCEEECCCCCHHH--CCCCC-------EEEE
T ss_conf 8318885076878952068-711201337753378731167768984236556566036100--58865-------4888
Q ss_pred EECCCCCHHHHHH---HH-HHHHHHCCCEEEEEEECCCCCCCHHHHHHHH---CCCCEEEEECCCCCC
Q ss_conf 7057765045799---99-9999847990799997697780059999986---199899994788888
Q gi|254780487|r 129 CARTSLGTINHSL---LS-LETLRNRNINIIGIAFIGDSMPKVEETIVKI---GRIPHLGRLPKIDPI 189 (217)
Q Consensus 129 V~~~~~g~i~~~~---l~-~~~~~~~g~~i~GiIlN~~~~~~~~~~le~~---~~ipvLG~iP~~~~~ 189 (217)
|+++..-++-+|- -. .+|.++-|+++=|+|.|.-...+-.|.++++ .|-.+++.+|+-.-.
T Consensus 150 VtSge~MAlYAANNI~kGI~kYa~~GGv~LGG~IcN~R~~~~e~El~~~fA~~lgtq~i~~VPrs~~V 217 (278)
T TIGR01287 150 VTSGEMMALYAANNIAKGILKYAKSGGVRLGGIICNSRNVDDEKELVDEFAKKLGTQLIHFVPRSNIV 217 (278)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHCCCCEECCEEECCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCC
T ss_conf 60340678999978877789997538822224787145762178999999987377067521788521
No 79
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.55 E-value=0.00059 Score=44.22 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=72.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 3299983589874799999999998404861-201388738068999998557873114430014510347889998502
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK-PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
+.++..|. ||||||++.+-|+..+....=| .|. ....|.+.+.-.-.+. .+..+.-..+....+|....
T Consensus 211 ~vvalVGP-TGVGKTTTiAKLAA~~~l~~~~~kV~---lIT~DtyRigA~eQLk-~Ya~ilgvp~~v~~~~~~l~----- 280 (412)
T PRK05703 211 GVVALVGP-TGVGKTTTLAKLAARYALEEGKDKVA---LITLDTYRIGAVEQLK-TYAKIMGIPVKVAYDPKELA----- 280 (412)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEE---EEEECCCCHHHHHHHH-HHHHHCCCEEEEECCHHHHH-----
T ss_conf 36999888-88756769999999999972998179---9983767777999999-99997197379847999999-----
Q ss_pred CCHHHHHHHHHHCCEEEEECCC-CCCCCCCCCCCHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 3507886422328879992276-5556676753089999974----7944897057765045799999999847990799
Q gi|254780487|r 82 IIDPATINPPDINDSIIIEGIG-GLLVPLTTEYLFIDLIERW----QFPIILCARTSLGTINHSLLSLETLRNRNINIIG 156 (217)
Q Consensus 82 ~i~~~~~~~~~~~D~viIEGag-g~~~~~~~~~~~~dla~~l----~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~G 156 (217)
.+.. -..++|+|+|..+| +..+ .....++...+ ...++||.++....-+ ..-.++.+ ..+.+.+
T Consensus 281 ---~al~-~~~~~dlILIDTaG~s~~d----~~~~~eL~~~~~~~~~~~~~LVlsat~~~~d-l~~i~~~f--~~~~~~~ 349 (412)
T PRK05703 281 ---KALE-QLANCDLILIDTAGRSQRD----PRLISELKALIENSKPIDVYLVLSATTKYRD-LKDIVKHF--SRLPLDG 349 (412)
T ss_pred ---HHHH-HHCCCCEEEEECCCCCCCC----HHHHHHHHHHHHHCCCCCEEEEECCCCCHHH-HHHHHHHH--CCCCCCE
T ss_conf ---9998-7158997999689889789----9999999999862488718999759899899-99999984--6799987
Q ss_pred EEECCCC-CCCHHH--HHHHHCCCCEE
Q ss_conf 9976977-800599--99986199899
Q gi|254780487|r 157 IAFIGDS-MPKVEE--TIVKIGRIPHL 180 (217)
Q Consensus 157 iIlN~~~-~~~~~~--~le~~~~ipvL 180 (217)
+|+-+.- ....-. .+...++.|+-
T Consensus 350 lI~TKlDEt~~~G~il~~~~~~~lpls 376 (412)
T PRK05703 350 LILTKLDETSSLGSILSLLIESGLPIS 376 (412)
T ss_pred EEEEEECCCCCCCHHHHHHHHHCCCEE
T ss_conf 999711289986299999999887969
No 80
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=97.54 E-value=0.0027 Score=40.09 Aligned_cols=139 Identities=18% Similarity=0.142 Sum_probs=67.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH-HHHHHHCC---CCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9832999835898747999999999984048612013887380689-99998557---8731144300145103478899
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK-TIHRIGRI---PKSHIIPEKWKLRTPASPHLAA 76 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 76 (217)
|+ -|-++...-|+|||+++..|+.++...|.| |. .-|.|++ ....+... ..... +.+..+.....+
T Consensus 1 M~-vi~~~~~KGG~GKtT~a~~la~~~~~~g~~-V~---liD~Dpq~s~~~W~~~a~~~~~~~-~~~~v~~~~~~~---- 70 (231)
T pfam07015 1 MQ-LITFCSFKGGAGKTTALMGLCSALASDGKR-VA---LFEADENRPLTKWRENALRKGTWD-PACEIFNADELP---- 70 (231)
T ss_pred CC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCE-EE---EEECCCCCCHHHHHHHHHHCCCCC-CCCCEECCCCHH----
T ss_conf 93-799961799865999999999999968995-99---996899868899999876468888-765222056601----
Q ss_pred HHHHCCCHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCH--HHHHHHHHHHHH-----
Q ss_conf 98502350788642-2328879992276555667675308999997479448970577650--457999999998-----
Q gi|254780487|r 77 EIDGVIIDPATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGT--INHSLLSLETLR----- 148 (217)
Q Consensus 77 ~~~~~~i~~~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~--i~~~~l~~~~~~----- 148 (217)
.++...... .+++|++||++.|+.. ..+...+. -++.+| .+..... +..+.-++.+++
T Consensus 71 -----~l~~~~~~~~~~~yD~VIIDtpg~~s------~~~~~AI~--~ADlVL-IP~qpSplD~~~a~~t~~~i~~~~~~ 136 (231)
T pfam07015 71 -----LLEQAYEHAEGSGFDYALADTHGGSS------ELNNTIIA--SSDLLL-IPTMLTPLDIDEALATYRYVIELLLT 136 (231)
T ss_pred -----HHHHHHHHHHHCCCCEEEECCCCCCC------HHHHHHHH--HCCEEE-ECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf -----58999998865799989983998575------89999999--789899-77899823399999999999999997
Q ss_pred -HCCCEEEEEEECCCCC
Q ss_conf -4799079999769778
Q gi|254780487|r 149 -NRNINIIGIAFIGDSM 164 (217)
Q Consensus 149 -~~g~~i~GiIlN~~~~ 164 (217)
++.++- .+++++.+.
T Consensus 137 ~~~~ip~-avl~tRv~~ 152 (231)
T pfam07015 137 ENLAIPT-AILRQRVPV 152 (231)
T ss_pred HCCCCCE-EEEEEECCC
T ss_conf 3789980-334551140
No 81
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.51 E-value=0.004 Score=39.01 Aligned_cols=156 Identities=19% Similarity=0.127 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHH-HHHHHHCCCCCCC--CCCCCCCCCCHHHHHHHH
Q ss_conf 9832999835898747999999999984048612013887380689-9999855787311--443001451034788999
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSK-TIHRIGRIPKSHI--IPEKWKLRTPASPHLAAE 77 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 77 (217)
|+ -|-++...-|+|||+++..|+..+...|.+ |. .-|.|++ ....+........ .+.+..+.....+.+
T Consensus 1 M~-vi~~~~~KGG~GKtT~a~~la~~~~~~g~~-v~---~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l--- 72 (231)
T PRK13849 1 MK-LLTFCSFKGGAGKTTALMGLCAALASDGKR-VA---LFEADENRPLTRWKENALRSNTWDPACEVYAADELPLL--- 72 (231)
T ss_pred CC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCE-EE---EEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHH---
T ss_conf 93-799961899876999999999999978995-99---99689986889999876525898877523405652578---
Q ss_pred HHHCCCHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC--HHHHHHHHHHHHH------
Q ss_conf 8502350788642-232887999227655566767530899999747944897057765--0457999999998------
Q gi|254780487|r 78 IDGVIIDPATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLG--TINHSLLSLETLR------ 148 (217)
Q Consensus 78 ~~~~~i~~~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g--~i~~~~l~~~~~~------ 148 (217)
+...... .+++|++||++.|+.- ..+..... -++.+| .+.... -+..+.-++..++
T Consensus 73 ------~~~~e~~~~~~~D~VIIDtpg~~s------~~~~~Ai~--~ADLVL-IP~qPSp~D~~~a~~tv~~i~~~~~~~ 137 (231)
T PRK13849 73 ------EAAYEDAELQGFDYALADTHGGSS------ELNNTIIA--SSNLLL-IPTMLTPLDIDEALSTYRYVIELLLSE 137 (231)
T ss_pred ------HHHHHHHHHCCCCEEEECCCCCCC------HHHHHHHH--HCCEEE-ECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------999988753699889981899775------89999999--789899-779998667999999999999999972
Q ss_pred HCCCEEEEEEECCCCCCC---H-HHHHHHHCCCCEE
Q ss_conf 479907999976977800---5-9999986199899
Q gi|254780487|r 149 NRNINIIGIAFIGDSMPK---V-EETIVKIGRIPHL 180 (217)
Q Consensus 149 ~~g~~i~GiIlN~~~~~~---~-~~~le~~~~ipvL 180 (217)
++.++. .+++|+.+... . ....+.+.++|+|
T Consensus 138 ~~~ip~-~vlltRv~a~~~t~~~~~i~~~le~lPvl 172 (231)
T PRK13849 138 NLAIPT-AILRQRVPVGRLTTSQRAMSDMLESLPVV 172 (231)
T ss_pred CCCCCE-EEEEEECCHHHHCHHHHHHHHHHHCCCCC
T ss_conf 878865-66654050454068899999999629955
No 82
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=97.51 E-value=0.00057 Score=44.31 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=68.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE----------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 3299983589874799999999998404861201----------388738068999998557873114430014510347
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ----------SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASP 72 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~----------~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (217)
.++=|||+ +|+||||..-.|...|+..|+| |+ ||.--=.|-..++.+.....-..+|.-|.=..|.+.
T Consensus 39 ~~vG~TG~-PGaGKSTl~~~l~~~lrRrG~~-VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~FIRs~ptrG 116 (333)
T TIGR00750 39 HVVGITGV-PGAGKSTLVEKLIMELRRRGLK-VAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGVFIRSMPTRG 116 (333)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf 78766468-8885777999998999765976-899988797597551454568877544222233228985676776667
Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 88999850235078864223288799922765556676753089999974794489705
Q gi|254780487|r 73 HLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCAR 131 (217)
Q Consensus 73 ~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~ 131 (217)
++ -..-....+.-...-+.+||++|||.+|= +-+=.|+++.-+.-|++-..
T Consensus 117 ~l-GGls~at~~~~~lldA~G~DVI~vETVGV-------GQSEVdi~~~aDT~v~v~~p 167 (333)
T TIGR00750 117 SL-GGLSKATRELVKLLDAAGYDVILVETVGV-------GQSEVDIINMADTFVVVTIP 167 (333)
T ss_pred CH-HHHHHHHHHHHHHHHHCCCCEEEEEEECC-------CHHHHHHHHHHCEEEEEECC
T ss_conf 52-57879999999999863898799984157-------52487887341505898548
No 83
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.48 E-value=0.00053 Score=44.51 Aligned_cols=157 Identities=20% Similarity=0.167 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC------CC---CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 9832999835898747999999999984048612013------88---73806899999855787311443001451034
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS------GM---YEETDSKTIHRIGRIPKSHIIPEKWKLRTPAS 71 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~------G~---~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (217)
|..-+=|+|. +|+|||+....|++.|+..|+| |++ ++ .+..|...++++.....-...+..+.+.....
T Consensus 1 m~Pii~ivG~-s~SGKTTLi~kli~~l~~~G~r-V~~IKH~~H~f~~D~pGkDS~r~r~AGA~~v~v~s~~r~al~~e~~ 78 (170)
T PRK10751 1 MIPLLAIAAW-SGTGKTTLLKKLIPALCARGIR-PGLIKHTHHDMDVDKPGKDSYELRKAGAAQTLVASQQRWALMTETP 78 (170)
T ss_pred CCCEEEEEEC-CCCCHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCEEEEEECC
T ss_conf 9877999946-9999999999999999987984-9999457778889999841099997326646887543212444336
Q ss_pred HHHHHHHHHCCCHHHHHHHH-HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 78899985023507886422-32887999227655566767530899999747944897057765045799999999847
Q gi|254780487|r 72 PHLAAEIDGVIIDPATINPP-DINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNR 150 (217)
Q Consensus 72 ~~~~~~~~~~~i~~~~~~~~-~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~ 150 (217)
. .+.........+.. ...|++||||--. ...|=|.|.+...|.-- ..+...
T Consensus 79 ~-----~~~~~l~~l~~~~~~~~~DlvlvEGfK~-----------------~~~pKIev~R~~~~~~~------~~~~~d 130 (170)
T PRK10751 79 E-----QEELDLHYLASRMDASKLDLILVEGFKH-----------------EPIAKIVLFRDGAGHRP------EELVID 130 (170)
T ss_pred C-----CCCCCHHHHHHHCCCCCCCEEEEECCCC-----------------CCCCEEEEEECCCCCCH------HHCCCC
T ss_conf 6-----6899999999861767777899833567-----------------89877999853359974------454899
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 990799997697780059999986199899994788888887999999971339
Q gi|254780487|r 151 NINIIGIAFIGDSMPKVEETIVKIGRIPHLGRLPKIDPIDPDVLHQKFQEHFTQ 204 (217)
Q Consensus 151 g~~i~GiIlN~~~~~~~~~~le~~~~ipvLG~iP~~~~~~~~~l~~~~~~~~~~ 204 (217)
-++.+++-+... -++ +|.++--+.+.++++.-+++.+
T Consensus 131 -~~iiAvasD~~~----------~~~------~P~f~lnd~~~Ia~fIl~~l~~ 167 (170)
T PRK10751 131 -EHVIAVASDVPL----------NLD------VPLLDINDVEQIADFIVEWLQK 167 (170)
T ss_pred -CCEEEEECCCCC----------CCC------CCCCCCCCHHHHHHHHHHHHHH
T ss_conf -988999848987----------779------7773777999999999999997
No 84
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.48 E-value=0.00049 Score=44.69 Aligned_cols=126 Identities=21% Similarity=0.206 Sum_probs=68.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC------CC---CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 32999835898747999999999984048612013------88---7380689999985578731144300145103478
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS------GM---YEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPH 73 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~------G~---~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (217)
|.+=|.|- +|+|||+....|++.|+..|+| |++ +. .+..|...++++.....-...+..+.+.......
T Consensus 2 kii~ivG~-snSGKTTLi~kli~~l~~~G~~-V~~iKH~~H~f~~D~~GkDS~r~~~AGA~~v~v~s~~~~~l~~~~~~~ 79 (159)
T cd03116 2 KVIGFVGY-SGSGKTTLLEKLIPALSARGLR-VAVIKHDHHDFDIDTPGKDSYRHREAGAEEVLVSSPRRWALIRELRDE 79 (159)
T ss_pred EEEEEEEC-CCCCHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCEEEEEEECCCC
T ss_conf 29999967-9999999999999999977985-989973476777778984417767529737999756718877744688
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf 89998502350788642232887999227655566767530899999747944897057765045799999999847990
Q gi|254780487|r 74 LAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNIN 153 (217)
Q Consensus 74 ~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~ 153 (217)
..........-.++|++||||-- ....|=|.|.+...+. +.+....-+
T Consensus 80 -------~~~~~~~~~~~~~~DlvlvEG~K-----------------~~~~pKIev~R~~~~~--------~~l~~~~~~ 127 (159)
T cd03116 80 -------PEPDLLLLLRLLDVDLVLVEGFK-----------------EEPIPKIEVHRPELGK--------PLLLPEDPN 127 (159)
T ss_pred -------CCCCHHHHHHCCCCCEEEEECCC-----------------CCCCCEEEEEECCCCC--------CCCCCCCCC
T ss_conf -------88729999626788899983466-----------------7888779998255798--------665789998
Q ss_pred EEEEEECCC
Q ss_conf 799997697
Q gi|254780487|r 154 IIGIAFIGD 162 (217)
Q Consensus 154 i~GiIlN~~ 162 (217)
+.+++-+..
T Consensus 128 i~Av~td~~ 136 (159)
T cd03116 128 VVAVATDEP 136 (159)
T ss_pred EEEEEECCC
T ss_conf 899997886
No 85
>PRK10037 cell division protein; Provisional
Probab=97.42 E-value=0.0046 Score=38.63 Aligned_cols=32 Identities=28% Similarity=0.272 Sum_probs=29.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 983299983589874799999999998404861
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
|+ .|.|+|..-|||||++++.|+.+|...+-+
T Consensus 1 M~-iial~s~kGGVGkTTltAnLA~aL~~~g~~ 32 (250)
T PRK10037 1 MA-ILGLQGVRGGVGTTSITAALAWSLQMLGEN 32 (250)
T ss_pred CC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 93-799960788876899999999999977991
No 86
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=97.37 E-value=0.00031 Score=45.92 Aligned_cols=93 Identities=26% Similarity=0.277 Sum_probs=53.2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE---CC--CC------CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 99983589874799999999998404861201---38--87------380689999985578731144300145103478
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQ---SG--MY------EETDSKTIHRIGRIPKSHIIPEKWKLRTPASPH 73 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~---~G--~~------~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (217)
|=|+|- +|+|||++...|++.|+..||++.. .| .. ...|...++.......-......+.+.+....
T Consensus 2 ~~i~G~-k~SGKTtL~~~l~~~L~~~Gy~V~~IKH~ghG~H~~~~d~~GkDs~rhr~AGA~~v~~~~~~~~~~~~~~~g- 79 (165)
T TIGR00176 2 LQIVGY-KNSGKTTLIERLVKALKARGYRVATIKHDGHGHHDFDIDKEGKDSYRHREAGADAVIVASSERYAVMTETQG- 79 (165)
T ss_pred EEEEEE-CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECCCCCCCHHHHHCCCCEEEEECCCEEEEEEECCC-
T ss_conf 378962-588678999999999970799508986089888756527998731332104362788667906899875289-
Q ss_pred HHHHHHHCCCHHHHHHHHH-HCCEEEEECCC
Q ss_conf 8999850235078864223-28879992276
Q gi|254780487|r 74 LAAEIDGVIIDPATINPPD-INDSIIIEGIG 103 (217)
Q Consensus 74 ~~~~~~~~~i~~~~~~~~~-~~D~viIEGag 103 (217)
.+.........++.. .+|++||||==
T Consensus 80 ----~~e~~L~~~l~~~~~~~~D~~LvEGfK 106 (165)
T TIGR00176 80 ----EEELDLEALLKRLADRELDIILVEGFK 106 (165)
T ss_pred ----CCCCCHHHHHHHCCCCCCCEEEEECCC
T ss_conf ----998787999864285526878985245
No 87
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.35 E-value=0.0076 Score=37.26 Aligned_cols=42 Identities=10% Similarity=-0.064 Sum_probs=32.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 794489705776504579999999984799079999769778
Q gi|254780487|r 123 QFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSM 164 (217)
Q Consensus 123 ~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~ 164 (217)
+.+..+|.....-++..+.-+++.+...++++.++|+|+...
T Consensus 207 ~T~~~lV~~pe~l~l~e~~ra~~~l~~~~i~v~~vi~n~~~p 248 (322)
T COG0003 207 GTSFRLVSIPEKLSLYETKRAVERLSLYGIPVDAVIVNKILP 248 (322)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHEEEEECCCC
T ss_conf 883799966101155889999999987598643155631366
No 88
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.35 E-value=0.0037 Score=39.23 Aligned_cols=156 Identities=19% Similarity=0.160 Sum_probs=73.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC-CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 2999835898747999999999984048-612013887380689999985578731144300145103478899985023
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYY-WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI 82 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~-~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (217)
-+...|. ||||||++.+-|++-+...+ -|-|+ .-..|.+.+.-.-.+. .+..+.-..+.-..+|....
T Consensus 205 vi~LVGP-TGVGKTTTlAKLAar~~~~~~~~kVa---iITtDtYRIGA~EQLk-~Ya~im~vp~~vv~~~~el~------ 273 (407)
T COG1419 205 VIALVGP-TGVGKTTTLAKLAARYVMLKKKKKVA---IITTDTYRIGAVEQLK-TYADIMGVPLEVVYSPKELA------ 273 (407)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHCCCCCEE---EEEECCCHHHHHHHHH-HHHHHHCCCEEEECCHHHHH------
T ss_conf 7999899-88758879999999997532576068---9971441152899999-99998699559963999999------
Q ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH----HCCCEEEEECCCCCHHHHHHH-HHHHHHHCCCEEEEE
Q ss_conf 507886422328879992276555667675308999997----479448970577650457999-999998479907999
Q gi|254780487|r 83 IDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIER----WQFPIILCARTSLGTINHSLL-SLETLRNRNINIIGI 157 (217)
Q Consensus 83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~----l~~~vILV~~~~~g~i~~~~l-~~~~~~~~g~~i~Gi 157 (217)
.....-+++|+++|..+|--. .......++... ..+.+.||.++..- ...+- .++ +.+-+++.|+
T Consensus 274 ---~ai~~l~~~d~ILVDTaGrs~---~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~--~f~~~~i~~~ 343 (407)
T COG1419 274 ---EAIEALRDCDVILVDTAGRSQ---YDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIK--QFSLFPIDGL 343 (407)
T ss_pred ---HHHHHHHCCCEEEEECCCCCC---CCHHHHHHHHHHHHCCCCCEEEEEEECCCC--HHHHHHHHH--HHCCCCCCEE
T ss_conf ---999985318889996899883---378999999999703566217999845764--688999999--7245886616
Q ss_pred EECCC-CCCCHHH--HHHHHCCCCEE
Q ss_conf 97697-7800599--99986199899
Q gi|254780487|r 158 AFIGD-SMPKVEE--TIVKIGRIPHL 180 (217)
Q Consensus 158 IlN~~-~~~~~~~--~le~~~~ipvL 180 (217)
|+-+- .....-. .+-..++.||.
T Consensus 344 I~TKlDET~s~G~~~s~~~e~~~PV~ 369 (407)
T COG1419 344 IFTKLDETTSLGNLFSLMYETRLPVS 369 (407)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 89713356763389999999689749
No 89
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.005 Score=38.40 Aligned_cols=182 Identities=14% Similarity=0.055 Sum_probs=86.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
-++..|- ||||||++.+-|+..+...+=|-|+ ....|.+.+.-.-.+.. +..+.-..+.....+...
T Consensus 225 vi~lVGP-TGVGKTTTiAKLAA~~~l~~~kkVa---LIT~DTYRIgAvEQLkt-Ya~Il~iPv~vv~~~~el-------- 291 (432)
T PRK12724 225 VVFFVGP-TGSGKTTSIAKLAAKYFLHMGKSVS---LYTTDNYRIAAIEQLKR-YADTMGMPFYPVKDIKKF-------- 291 (432)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHCCCEEE---EEECCCCCHHHHHHHHH-HHHHHCCCEEEEECHHHH--------
T ss_conf 9999899-9988899999999999997499279---99526653779999999-999859945995189999--------
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH-------CCCEEEEECCCCCHHHHHHH-HHHHHHHCCCEEE
Q ss_conf 078864223288799922765556676753089999974-------79448970577650457999-9999984799079
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERW-------QFPIILCARTSLGTINHSLL-SLETLRNRNINII 155 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l-------~~~vILV~~~~~g~i~~~~l-~~~~~~~~g~~i~ 155 (217)
..++.+ .++|+++|..||--.. ......++...+ ...+.||.++... +..+. .++. ...+++.
T Consensus 292 ~~al~~--~~~DlILIDTAGrS~r---d~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk--~~dl~~ii~~--f~~l~~~ 362 (432)
T PRK12724 292 KETLAR--DGSELILIDTAGYSHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKA--YESLNYR 362 (432)
T ss_pred HHHHHH--CCCCEEEEECCCCCCC---CHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--HHHHHHHHHH--HCCCCCC
T ss_conf 999985--6999999929998978---99999999999986366788517999978899--8999999998--4269998
Q ss_pred EEEECCC-CCCCH--HHHHHHHCCCCEEEEE------CC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9997697-78005--9999986199899994------78-88888879999999713399999999
Q gi|254780487|r 156 GIAFIGD-SMPKV--EETIVKIGRIPHLGRL------PK-IDPIDPDVLHQKFQEHFTQSLLQKYF 211 (217)
Q Consensus 156 GiIlN~~-~~~~~--~~~le~~~~ipvLG~i------P~-~~~~~~~~l~~~~~~~~~~~~l~~~~ 211 (217)
++|+-+- ..... .=.+...++.|+- ++ |. +...+++.+++.+ +.+..|++.-
T Consensus 363 ~lIfTKLDET~s~G~ilni~~~~~~Pis-YiT~GQ~VPdDI~~A~~~~la~li---lg~~~~~~~~ 424 (432)
T PRK12724 363 RILLTKLDEADFLGSFLELADTYSKSFT-YLSVGQEVPFDILNATKNLMAECV---VFPEKIAELR 424 (432)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHCCCEE-EEECCCCCCCCHHHCCHHHHHHHH---HHHHHHHHHH
T ss_conf 4999712277986699999999889869-980899797173335999999997---6679899875
No 90
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.24 E-value=0.002 Score=40.93 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=70.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCC-CCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99983589874799999999998404-86120138873806899999855787311443001451034788999850235
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAY-YWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~-~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
+...|- ||||||++.+-|+..+.-. +-+.|+ ....|.+.+.-.-.+. .+..+.-..+....++...
T Consensus 179 ~alVGP-TGVGKTTTiAKLAAr~~l~~g~~kVa---LIT~DTYRIgAvEQLk-tYa~IlgvPv~vv~~~~eL-------- 245 (404)
T PRK06995 179 FALVGP-TGVGKTTTTAKLAARCVMRHGASKVA---LLTTDSYRIGGHEQLR-IYGKILGVPVHAVKDAADL-------- 245 (404)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHHHCCCCEE---EEECCCCCHHHHHHHH-HHHHHCCCEEEEECCHHHH--------
T ss_conf 898668-88763758999999999983898379---9976875478999999-9998759559995999999--------
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH-----HCCCEEEEECCCCCHHHHHH-HHHHHHHHCCCEEEEE
Q ss_conf 07886422328879992276555667675308999997-----47944897057765045799-9999998479907999
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIER-----WQFPIILCARTSLGTINHSL-LSLETLRNRNINIIGI 157 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~-----l~~~vILV~~~~~g~i~~~~-l~~~~~~~~g~~i~Gi 157 (217)
..+..+ -+++|+|+|..+|- ++ .+....+.... ....++||.++... ...+ -.+.. ...+++.|+
T Consensus 246 ~~aL~~-l~~~dlILIDTaGr--s~--rD~~~~e~l~~l~~~~~~~~~~LVLsat~~--~~dl~~i~~~--f~~~~~~~~ 316 (404)
T PRK06995 246 RLALAE-LRNKHIVLIDTVGM--SQ--RDRMVSEQIAMLHGAGAPVQRLLLLNATSH--GDTLNEVVQA--YRGPGLAGC 316 (404)
T ss_pred HHHHHH-HCCCCEEEEECCCC--CC--CCHHHHHHHHHHHHCCCCCEEEEEECCCCC--HHHHHHHHHH--HCCCCCCEE
T ss_conf 999997-08999999809998--97--688899999999735788528999779899--9999999998--446999839
Q ss_pred EECCCCC-CCHHHH--HHHHCCCCEE
Q ss_conf 9769778-005999--9986199899
Q gi|254780487|r 158 AFIGDSM-PKVEET--IVKIGRIPHL 180 (217)
Q Consensus 158 IlN~~~~-~~~~~~--le~~~~ipvL 180 (217)
|+-+.-. ...-.. +-..++.|+-
T Consensus 317 I~TKLDEt~~~G~iln~~~~~~lPls 342 (404)
T PRK06995 317 ILTKLDEAASLGGALDTVIRHKLPLH 342 (404)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 98304067972399999999789859
No 91
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.06 E-value=0.001 Score=42.66 Aligned_cols=94 Identities=21% Similarity=0.182 Sum_probs=51.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE---CCC-----CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 983299983589874799999999998404861201---388-----738068999998557873114430014510347
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ---SGM-----YEETDSKTIHRIGRIPKSHIIPEKWKLRTPASP 72 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~---~G~-----~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (217)
|.+-+=|+|. +|+|||++.--|++.|+..|++.-. ++. ....|...+++......-.....-+.+......
T Consensus 1 m~~Il~ivG~-k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~aGa~~~v~~s~~~~~~~~~~~~ 79 (161)
T COG1763 1 MMKILGIVGY-KNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRKAGADQVVVASDHRTALMTRTPD 79 (161)
T ss_pred CCCEEEEEEC-CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEEEEEECCC
T ss_conf 9728999962-799734289999999975793799998658777778898766100035663499955978999982687
Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCEEEEECCC
Q ss_conf 8899985023507886422328879992276
Q gi|254780487|r 73 HLAAEIDGVIIDPATINPPDINDSIIIEGIG 103 (217)
Q Consensus 73 ~~~~~~~~~~i~~~~~~~~~~~D~viIEGag 103 (217)
...+..+..+....|++||||=-
T Consensus 80 --------~~L~~vl~~l~~~~D~vLVEGFK 102 (161)
T COG1763 80 --------RDLDAVLSRLDPLLDLVLVEGFK 102 (161)
T ss_pred --------CCHHHHHHHCCCCCCEEEEECCC
T ss_conf --------68999997427556799995256
No 92
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.04 E-value=0.0043 Score=38.80 Aligned_cols=35 Identities=29% Similarity=0.194 Sum_probs=30.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCCE
Q ss_conf 9832999835898747999999999984-0486120
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALN-AYYWKPI 35 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~-~~~~KPv 35 (217)
|++.|.|+...-|||||+++.-|+.+|. .++.|..
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVL 36 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVL 36 (259)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 976999985788851999999999999983899789
No 93
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.0016 Score=41.51 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 983299983589874799999999998404861
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
|+++|+|||- +|||||++..-++..|+..+||
T Consensus 4 ~~mki~ITG~-PGvGKtTl~~ki~e~L~~~g~k 35 (179)
T COG1618 4 MAMKIFITGR-PGVGKTTLVLKIAEKLREKGYK 35 (179)
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCE
T ss_conf 5459998679-9845899999999999855966
No 94
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.013 Score=35.85 Aligned_cols=156 Identities=18% Similarity=0.206 Sum_probs=70.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf 99983589874799999999998404861201388738068999998557873114430014510347889998502350
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIID 84 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 84 (217)
|-..|- ||||||++.+-|+..+.... |-|+ ....|...+...-.+.. +..+.-..+....++... .
T Consensus 244 IALVGP-TGVGKTTTIAKLAArf~~~~-KkVA---LITtDTYRIGAVEQLKT-YAeIMgVPV~VV~dp~eL--------~ 309 (436)
T PRK11889 244 IALIGP-TGVGKTTTLAKMAWQFHGKK-KTVG---FITTDHSRIGTVQQLQD-YVKTIGFEVIAVRDEAAM--------T 309 (436)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHCCC-CEEE---EEECCCCHHHHHHHHHH-HHHHHCCCEEEECCHHHH--------H
T ss_conf 999899-99888999999999986169-8089---99806634769999999-999849943996888999--------9
Q ss_pred HHHHHHH--HHCCEEEEECCCCCCCCCCCCCCHHHHHHHH---C-CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 7886422--3288799922765556676753089999974---7-94489705776504579999999984799079999
Q gi|254780487|r 85 PATINPP--DINDSIIIEGIGGLLVPLTTEYLFIDLIERW---Q-FPIILCARTSLGTINHSLLSLETLRNRNINIIGIA 158 (217)
Q Consensus 85 ~~~~~~~--~~~D~viIEGagg~~~~~~~~~~~~dla~~l---~-~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiI 158 (217)
.+...+. .++|+++|..+|- ++ .......++...+ . ..+.||.++....- +..-.+. +...+++-|+|
T Consensus 310 ~AL~~lkdka~~DLILIDTAGR--S~-RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~-DL~eIi~--rF~~l~idglI 383 (436)
T PRK11889 310 RALTYFKEEARVDYILIDTAGK--NY-RASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIIT--NFKDIHIDGIV 383 (436)
T ss_pred HHHHHHHHCCCCCEEEEECCCC--CC-CCHHHHHHHHHHHHHCCCCEEEEEEECCCCHH-HHHHHHH--HHCCCCCCEEE
T ss_conf 9999876336888899929898--84-68999999999985127771699997889989-9999999--72579988289
Q ss_pred ECCCC-CCCHHH--HHHHHCCCCEE
Q ss_conf 76977-800599--99986199899
Q gi|254780487|r 159 FIGDS-MPKVEE--TIVKIGRIPHL 180 (217)
Q Consensus 159 lN~~~-~~~~~~--~le~~~~ipvL 180 (217)
+-+.- ....-. .+...+++|+.
T Consensus 384 fTKLDET~SlG~ILNv~~~s~LPIs 408 (436)
T PRK11889 384 FTKFDETASSGELLKIPAVSSAPIV 408 (436)
T ss_pred EEECCCCCCCHHHHHHHHHHCCCEE
T ss_conf 9713256870378889988399879
No 95
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.91 E-value=0.0038 Score=39.16 Aligned_cols=97 Identities=23% Similarity=0.181 Sum_probs=58.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf 99983589874799999999998404861201388738068999998557873114430014510347889998502350
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIID 84 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 84 (217)
|-++...-|||||+++..|+..+...++|-.- -|.|++
T Consensus 2 i~~~n~KGGvGKtt~~~~la~~~a~~g~~vl~----iD~DpQ-------------------------------------- 39 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLL----IDLDPQ-------------------------------------- 39 (104)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE----EECCCC--------------------------------------
T ss_conf 99973899876899999999999977992999----977988--------------------------------------
Q ss_pred HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEE-EECCCCCHHHHHHHHHH-----HHHHCCCEEEEEE
Q ss_conf 78864223288799922765556676753089999974794489-70577650457999999-----9984799079999
Q gi|254780487|r 85 PATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIIL-CARTSLGTINHSLLSLE-----TLRNRNINIIGIA 158 (217)
Q Consensus 85 ~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vIL-V~~~~~g~i~~~~l~~~-----~~~~~g~~i~GiI 158 (217)
+|+++|...++... .......-++.++ ......-++....-..+ ...+......|++
T Consensus 40 ---------yD~iiIDtpp~~~~--------~~~~al~~aD~viiP~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (104)
T cd02042 40 ---------YDYIIIDTPPSLGL--------LTRNALAAADLVLIPVQPSPLDLDGLEKLLETLILEDRLNPDLDILGIL 102 (104)
T ss_pred ---------CCEEEEECCCCCCH--------HHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf ---------88899979499989--------9999999789999983698899999999999999999769998899998
Q ss_pred EC
Q ss_conf 76
Q gi|254780487|r 159 FI 160 (217)
Q Consensus 159 lN 160 (217)
+|
T Consensus 103 ~~ 104 (104)
T cd02042 103 PT 104 (104)
T ss_pred EC
T ss_conf 09
No 96
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=96.88 E-value=0.0057 Score=38.01 Aligned_cols=97 Identities=18% Similarity=0.135 Sum_probs=50.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHH------HHHHH--HHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99983589874799999999998404861201388738068------99999--85578731144300145103478899
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDS------KTIHR--IGRIPKSHIIPEKWKLRTPASPHLAA 76 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (217)
|-|+--.-|||||+++.-|+.+|...|.| |.. .|-|+ .++.. ..........+.|....-+.......
T Consensus 3 IaVaNqKGGvGKTTtavnLA~aLA~~G~r-Vll---IDlDpqq~slt~~l~nr~~~~~~~~~~l~~P~~~~l~~~~~~~~ 78 (261)
T pfam09140 3 IVVGNEKGGSGKSTTAVHVAVALLYLGAR-VAT---IDLDLRQRTLTRYIENRAATAERTGLDLPVPKHLCLPDDVSEVF 78 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCC-EEE---EECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99971789872999999999999988997-899---97999998512344303556551386534665344550677761
Q ss_pred H---HHHCCCHHHHHHHHHHCCEEEEECCCCC
Q ss_conf 9---8502350788642232887999227655
Q gi|254780487|r 77 E---IDGVIIDPATINPPDINDSIIIEGIGGL 105 (217)
Q Consensus 77 ~---~~~~~i~~~~~~~~~~~D~viIEGagg~ 105 (217)
. .+......+...+..+||++||...+++
T Consensus 79 ~~~~~~~~~L~~al~~l~~~yDfIlIDcPPsl 110 (261)
T pfam09140 79 DGESADDARLEEAVADLEQDADFIVIDTPGSD 110 (261)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 34557899999999998757999999699857
No 97
>PRK05380 pyrG CTP synthetase; Validated
Probab=96.67 E-value=0.052 Score=32.01 Aligned_cols=181 Identities=19% Similarity=0.124 Sum_probs=85.4
Q ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHHHHCCCCC------------------CEECCC--------CCCCHHHHHHHHHC
Q ss_conf 9832999835-89874799999999998404861------------------201388--------73806899999855
Q gi|254780487|r 1 MKLRLVIVGT-DTSVGKTIFASALVHALNAYYWK------------------PIQSGM--------YEETDSKTIHRIGR 53 (217)
Q Consensus 1 M~~~i~I~GT-~t~vGKT~vs~~L~~~l~~~~~K------------------Pv~~G~--------~~~~D~~~~~~~~~ 53 (217)
|+|=|||||- -|+.||-.+++.|.+.|+.+|+| |+|-|. ..|-|-....+...
T Consensus 1 ~tKyIfVTGGVvS~lGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GTMsP~qHGEVfVt~DG~EtDLDLGhYERFl~ 80 (534)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGALLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLD 80 (534)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCC
T ss_conf 96099996983015740899999999999789658898414652258998896657537888887401466751354348
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHC--------------CCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH----
Q ss_conf 7873114430014510347889998502--------------3507886422328879992276555667675308----
Q gi|254780487|r 54 IPKSHIIPEKWKLRTPASPHLAAEIDGV--------------IIDPATINPPDINDSIIIEGIGGLLVPLTTEYLF---- 115 (217)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~---- 115 (217)
...+... -.+--.-+..-+..+..+. .|.....+.++++|++|||--|-+.+ .+..-.
T Consensus 81 ~~l~~~~--niTtGkiy~~Vi~kER~G~YLG~TVQvIPHiTdeIk~~i~~~a~~~Dv~ivEiGGTVGD--IEs~pFlEAi 156 (534)
T PRK05380 81 TNLSKYN--NVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILRAAEGADVVIVEIGGTVGD--IESLPFLEAI 156 (534)
T ss_pred CCCCCCC--CCCCCHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCCEEEH--HCCCHHHHHH
T ss_conf 8876666--60333989999888745786887347788866899999997277888899975762101--1026899999
Q ss_pred HHHHHHHCCC-EEEEECC---CCCHH-----HHHHHHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf 9999974794-4897057---76504-----579999999984799079999769--77800599999861998999947
Q gi|254780487|r 116 IDLIERWQFP-IILCART---SLGTI-----NHSLLSLETLRNRNINIIGIAFIG--DSMPKVEETIVKIGRIPHLGRLP 184 (217)
Q Consensus 116 ~dla~~l~~~-vILV~~~---~~g~i-----~~~~l~~~~~~~~g~~i~GiIlN~--~~~~~~~~~le~~~~ipvLG~iP 184 (217)
.++...++.. ++.|--. .+.+. --+--++..++..|+.---++.-. ...+..++-|.-++++|.=.+|.
T Consensus 157 RQ~~~e~g~~n~~~iHvtlvP~l~~~gE~KTKPTQhSVkeLr~~GIqPDilvcRse~~l~~~~k~KIalfcnV~~~~VI~ 236 (534)
T PRK05380 157 RQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEAVIS 236 (534)
T ss_pred HHHHHHHCCCCEEEEEEECCCEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEE
T ss_conf 99987608787899997313101478754677318889999965899874786257768989999886415887899686
Q ss_pred C
Q ss_conf 8
Q gi|254780487|r 185 K 185 (217)
Q Consensus 185 ~ 185 (217)
-
T Consensus 237 ~ 237 (534)
T PRK05380 237 A 237 (534)
T ss_pred C
T ss_conf 2
No 98
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=96.59 E-value=0.059 Score=31.65 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 98329998358987479999999999840486120138873806899999855787311443001451034788999850
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG 80 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
|++-=||.+-.-|||||.++.-|++.+.-....|+.. |+|+..-.-..........+.-..-. ...++
T Consensus 1 Ma~IH~vlqgKGGVGKS~va~~LaQY~~~~~~~~~~i----DTDpvN~tf~~ykal~v~~i~I~e~~-~i~~r------- 68 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSMIAATIAQYKAGKGQKPLCI----DTDPVNATFEGYKALNVRRLNIMDGD-EINTR------- 68 (241)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEE----ECCCCCCCHHHCCCCCCEEEEEECCC-CCCHH-------
T ss_conf 9759998558886309999999999998359998556----08999705342143675577752388-65666-------
Q ss_pred CCCHHHHHH-HHHHCCEEEEECCCCCCCCCC---CCCCHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHHHH-HCCCEE
Q ss_conf 235078864-223288799922765556676---7530899999747944897057-7650457999999998-479907
Q gi|254780487|r 81 VIIDPATIN-PPDINDSIIIEGIGGLLVPLT---TEYLFIDLIERWQFPIILCART-SLGTINHSLLSLETLR-NRNINI 154 (217)
Q Consensus 81 ~~i~~~~~~-~~~~~D~viIEGagg~~~~~~---~~~~~~dla~~l~~~vILV~~~-~~g~i~~~~l~~~~~~-~~g~~i 154 (217)
..+..... +..+.|++|=-||.. +.|.. .+....++....+..+++=.-. +.+...+++...+.+. +-+-++
T Consensus 69 -~FD~l~E~i~~~~~~~VID~GAst-fvPL~~Yl~eN~v~~ll~e~G~~v~iH~vi~GGqa~~DT~~gl~~l~~~~~~~~ 146 (241)
T PRK13886 69 -NFDALVEMIASTEGDVIIDNGASS-FVPLSHYLISNQVPALLQDMGHELVVHTVVTGGQALLDTVSGFAQLASQFPAEC 146 (241)
T ss_pred -HHHHHHHHHHCCCCCEEEECCHHH-HHHHHHHHHHCCHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf -668999998568998899885176-778999998788699999779739999984598427789999999998658778
Q ss_pred -EEEEECC
Q ss_conf -9999769
Q gi|254780487|r 155 -IGIAFIG 161 (217)
Q Consensus 155 -~GiIlN~ 161 (217)
.=+.+|.
T Consensus 147 ~~VVWlN~ 154 (241)
T PRK13886 147 LFVVWLNP 154 (241)
T ss_pred CEEEEECC
T ss_conf 78999748
No 99
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.56 E-value=0.0058 Score=38.00 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 2999835898747999999999984
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
-|+|.|| ||+|||++++.|+.-|+
T Consensus 94 iILigGt-sGvGKSTlA~~LA~rLg 117 (306)
T PRK04220 94 IILIGGA-SGVGTSTIAFELASRLG 117 (306)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHC
T ss_conf 9998589-98878999999999709
No 100
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.44 E-value=0.0049 Score=38.43 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=35.8
Q ss_pred EEEEECCCCC-HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHH---HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 4897057765-0457999999998479907999976977800599---99986199899994788888887999999971
Q gi|254780487|r 126 IILCARTSLG-TINHSLLSLETLRNRNINIIGIAFIGDSMPKVEE---TIVKIGRIPHLGRLPKIDPIDPDVLHQKFQEH 201 (217)
Q Consensus 126 vILV~~~~~g-~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~~~---~le~~~~ipvLG~iP~~~~~~~~~l~~~~~~~ 201 (217)
+.+|++.+.| +-..+-++..+....|-.=.|+|=-+...--..+ ...+..|+|+.=+ -+++.+.+.++++
T Consensus 197 i~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv------~~~~~l~~~l~~~ 270 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVA------RDPKELAKALERL 270 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEE------CCHHHHHHHHHHC
T ss_conf 9997788875788999999999997389967999807776789999999999959748993------9999999999865
Q ss_pred HH
Q ss_conf 33
Q gi|254780487|r 202 FT 203 (217)
Q Consensus 202 ~~ 203 (217)
-+
T Consensus 271 ~~ 272 (282)
T TIGR03499 271 RD 272 (282)
T ss_pred CC
T ss_conf 79
No 101
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.42 E-value=0.012 Score=36.06 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=53.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEECCCC-CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 299983589874799999999998404861-2013887-38068999998557873114430014510347889998502
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK-PIQSGMY-EETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~~G~~-~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
++=|.| ..|+|||++...+++.|+.. || .|.+|-. -.+|+.++.+.. ..+...++.- ...|..+..-..
T Consensus 15 ~i~v~G-p~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~--g~~i~~v~TG-----~~CH~da~m~~~ 85 (202)
T COG0378 15 RIGVGG-PPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLP--GEPIIGVETG-----KGCHLDASMNLE 85 (202)
T ss_pred EEEECC-CCCCCHHHHHHHHHHHHHHH-CCEEEEECEEECHHHHHHHHHCC--CCEEEEECCC-----CCCCCCHHHHHH
T ss_conf 999617-99867899999999999752-77689964040065599997377--9806874038-----765886788999
Q ss_pred CCHHHHHHHHHHCCEEEEECCCCCCCCCCCC
Q ss_conf 3507886422328879992276555667675
Q gi|254780487|r 82 IIDPATINPPDINDSIIIEGIGGLLVPLTTE 112 (217)
Q Consensus 82 ~i~~~~~~~~~~~D~viIEGagg~~~~~~~~ 112 (217)
.++. +.......|+++||.+|-+..|...+
T Consensus 86 ai~~-l~~~~~~~Dll~iEs~GNL~~~~sp~ 115 (202)
T COG0378 86 AIEE-LVLDFPDLDLLFIESVGNLVCPFSPD 115 (202)
T ss_pred HHHH-HHHCCCCCCEEEEECCCCEECCCCCC
T ss_conf 9999-86317767789992376432446804
No 102
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.028 Score=33.69 Aligned_cols=144 Identities=21% Similarity=0.206 Sum_probs=65.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCC---------CCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH-HHHH
Q ss_conf 99983589874799999999998404---------8612013887380689999985578731144300145103-4788
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAY---------YWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPA-SPHL 74 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~---------~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 74 (217)
|=|+|- |++|||+++-.|+..|+.. |||.... .............|.. +.... -.++
T Consensus 11 IgIaG~-SgSGKTTv~~~l~~~~~~~~~~~I~~D~YYk~~~~----------~~~~~~~~~n~d~p~A--~D~dLl~~~L 77 (218)
T COG0572 11 IGIAGG-SGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSH----------LPFEERNKINYDHPEA--FDLDLLIEHL 77 (218)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHH----------CCHHHCCCCCCCCHHH--HCHHHHHHHH
T ss_conf 998679-87788999999999828675247652232025301----------6675537857448234--3689999999
Q ss_pred HHHHHHCCCHH---HHHH--------HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Q ss_conf 99985023507---8864--------223288799922765556676753089999974794489705776504579999
Q gi|254780487|r 75 AAEIDGVIIDP---ATIN--------PPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLS 143 (217)
Q Consensus 75 ~~~~~~~~i~~---~~~~--------~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~ 143 (217)
.....+..+.. .|.. .-...+++||||..++.+ ..+-...+..+.+-++.+. ++..-+.
T Consensus 78 ~~L~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VIIvEGi~~l~d--------~~lr~~~d~kIfvdt~~D~-RliRri~- 147 (218)
T COG0572 78 KDLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--------ERLRDLMDLKIFVDTDADV-RLIRRIK- 147 (218)
T ss_pred HHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEECCCCCCC--------HHHHHHCCEEEEEECCCCH-HHHHHHH-
T ss_conf 99976992245642031363257733138972899942300150--------7677660678999778327-8899888-
Q ss_pred HHHHHHCCCEEEEEEEC--CCCCCCHHHHHH
Q ss_conf 99998479907999976--977800599999
Q gi|254780487|r 144 LETLRNRNINIIGIAFI--GDSMPKVEETIV 172 (217)
Q Consensus 144 ~~~~~~~g~~i~GiIlN--~~~~~~~~~~le 172 (217)
.-.+.+|-++-.++-. ....|.....+|
T Consensus 148 -RD~~~rg~~~~~vi~qy~~~vkp~~~~fIe 177 (218)
T COG0572 148 -RDVQERGRDLESVIEQYVKTVRPMYEQFIE 177 (218)
T ss_pred -HHHHHHCCCHHHHHHHHHHHHCHHHHHCCC
T ss_conf -779881999899999999861741460157
No 103
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.017 Score=35.00 Aligned_cols=157 Identities=12% Similarity=0.063 Sum_probs=69.2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHH-HCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99983589874799999999998-40486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHAL-NAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l-~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
|-..|- ||||||++.+.|+..+ ...+-+-|. ....|.+.+.-.-... .+..+..........+...
T Consensus 351 ~AlvGp-TGvGKTTT~aKlAa~~~~~~g~~~va---lit~DtyRiga~eQL~-~y~~ilgvpv~~~~~~~~l-------- 417 (557)
T PRK12727 351 IALVGP-TGAGKTTTIAKLAQRFAAQHAPRDVA---LVTTDTQRVGGREQLH-SYGRQLGIAVHEADSAESL-------- 417 (557)
T ss_pred EEEECC-CCCCCHHHHHHHHHHHHHHCCCCEEE---EEECCCCCHHHHHHHH-HHHHHHCCEEEEECCHHHH--------
T ss_conf 787437-77673117999999999973998189---9972664087999999-9999839757982899999--------
Q ss_pred HHHHHHHHHHCCEEEEECCCC-CCCCCCCCCCHHHHHHHHCCCEEEEECCCCC--HHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 078864223288799922765-5566767530899999747944897057765--0457999999998479907999976
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGG-LLVPLTTEYLFIDLIERWQFPIILCARTSLG--TINHSLLSLETLRNRNINIIGIAFI 160 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg-~~~~~~~~~~~~dla~~l~~~vILV~~~~~g--~i~~~~l~~~~~~~~g~~i~GiIlN 160 (217)
. .....-.++|+|||..+|- ..++...+.. ..+....+...+||.++... .+..++ ..+ ..+++.|+||.
T Consensus 418 ~-~~l~~l~~~~lvliDTaG~~~rd~~~~~~~-~~l~~~~~~~~~Lvl~a~~~~~~l~~~~---~~~--~~~~~~~~i~T 490 (557)
T PRK12727 418 L-DLLERLRDYKLVLIDTAGMGQRDRALAAQL-NWLRAARQVTSLLVLPANAHFSDLDEVV---RRF--AHAKPQGVVLT 490 (557)
T ss_pred H-HHHHHHCCCCEEEEECCCCCCCCHHHHHHH-HHHHCCCCCCEEEEEECCCCHHHHHHHH---HHH--CCCCCCEEEEE
T ss_conf 9-999983699989994999884699999999-9875147763599996889989999999---985--37998748996
Q ss_pred CCC-CCCHHHHHHH--HCCCCEEE
Q ss_conf 977-8005999998--61998999
Q gi|254780487|r 161 GDS-MPKVEETIVK--IGRIPHLG 181 (217)
Q Consensus 161 ~~~-~~~~~~~le~--~~~ipvLG 181 (217)
+.- ....-+.+.- .+++|+..
T Consensus 491 KlDE~~~~G~~l~~~~~~~lp~~y 514 (557)
T PRK12727 491 KLDETGRFGSALSVVVDHQMPITW 514 (557)
T ss_pred ECCCCCCCCHHHHHHHHHCCCEEE
T ss_conf 143678703999999996898289
No 104
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=96.32 E-value=0.024 Score=34.13 Aligned_cols=119 Identities=14% Similarity=0.027 Sum_probs=56.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCC--CCCHHHH-----HHHHHCCCCCCCCCCCCCCCCCH-HHHHHH
Q ss_conf 999835898747999999999984048612013887--3806899-----99985578731144300145103-478899
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMY--EETDSKT-----IHRIGRIPKSHIIPEKWKLRTPA-SPHLAA 76 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~--~~~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 76 (217)
|-|+|- |++|||+++-.|...|+..+.++...... ...|..+ .............-.|..+.... ..++..
T Consensus 2 IgIaG~-SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~d~P~a~d~~ll~~~l~~ 80 (196)
T pfam00485 2 IGVAGS-SGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHMEDRKRAGNNHYSFFSPEANDFDLLYEQFKE 80 (196)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 899899-8571999999999996605877641243179860410244375767651457889789662359999999999
Q ss_pred HHHHCCCHH---HH--------HHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf 985023507---88--------642232887999227655566767530899999747944897057
Q gi|254780487|r 77 EIDGVIIDP---AT--------INPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART 132 (217)
Q Consensus 77 ~~~~~~i~~---~~--------~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~ 132 (217)
...+..+.. .+ ...-+..+++||||...++.+ ++...++..+.+-++.
T Consensus 81 Lk~g~~i~~P~Ydf~~~~r~~~~~~i~p~~viIvEGi~~l~~~--------~ir~l~D~kIfid~~~ 139 (196)
T pfam00485 81 LKEGGSGDKPIYNHVTGEADPWPELIEGADILFIEGLHGLYDE--------RVAQLLDLKIYVDPDI 139 (196)
T ss_pred HHCCCCEEEEEEECCCCCCCCCCEECCCCCEEEEECHHHCCCH--------HHHHHHCEEEEEECCC
T ss_conf 7089945765675134533677366178856999433330327--------7887638479972680
No 105
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.12 E-value=0.099 Score=30.26 Aligned_cols=114 Identities=20% Similarity=0.142 Sum_probs=55.6
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEE--------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCHHHHH
Q ss_conf 99983589874799999999998404861-201--------3887380689999985578731144300145-1034788
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWK-PIQ--------SGMYEETDSKTIHRIGRIPKSHIIPEKWKLR-TPASPHL 74 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~--------~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 74 (217)
|=|+|+ .|+|||+..-.|++.|+..+.| .|- +|.---.|...+......+.-.....+.+-. ...++..
T Consensus 2 iGitG~-pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~~ 80 (148)
T cd03114 2 IGITGV-PGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT 80 (148)
T ss_pred EEECCC-CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH
T ss_conf 762589-9787899999999999978983799996888786686203235453441579983686346666542046889
Q ss_pred HHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9998502350788642232887999227655566767530899999747944897057765
Q gi|254780487|r 75 AAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLG 135 (217)
Q Consensus 75 ~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g 135 (217)
. +.....-..++|+++||.+|- +.+-.+++..-+. +++|.....|
T Consensus 81 ~--------~~i~~l~~~g~D~IiIETvGv-------GQse~~i~~~aD~-~i~v~~p~~G 125 (148)
T cd03114 81 P--------EVIRVLDAAGFDVIIVETVGV-------GQSEVDIASMADT-TVVVMAPGAG 125 (148)
T ss_pred H--------HHHHHHHHCCCCEEEEECCCC-------CCCHHHHHHHCCE-EEEEECCCCC
T ss_conf 9--------999999975999899974877-------7560265543566-9999636887
No 106
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.05 E-value=0.015 Score=35.34 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=24.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 9998358987479999999999840486120
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
|=|+|- |++|||+++-.|...+...+.+++
T Consensus 2 IgIaG~-SgSGKTT~a~~L~~~l~~~~~~~~ 31 (179)
T cd02028 2 VGIAGP-SGSGKTTFAKKLSNQLRVNGIGPV 31 (179)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 899898-977899999999999846488539
No 107
>KOG2749 consensus
Probab=96.00 E-value=0.027 Score=33.75 Aligned_cols=129 Identities=14% Similarity=0.144 Sum_probs=61.3
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE------CCC---CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH-H
Q ss_conf 83299983589874799999999998404861201------388---7380689999985578731144300145103-4
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ------SGM---YEETDSKTIHRIGRIPKSHIIPEKWKLRTPA-S 71 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~------~G~---~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 71 (217)
..+++|.|- ||+|||+++--|+...-+.++||.- +|. +-..-+..+............-.|..+.... +
T Consensus 103 GPrv~vVGp-~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~~~D~~eGf~l~~pLV~~FG~~s 181 (415)
T KOG2749 103 GPRVMVVGP-TDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEMPLDVIEGFSLTAPLVYNFGLTS 181 (415)
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEECCCCHHHEECCCCCCHHHCCCCCCCEEEECCCCC
T ss_conf 977999898-7656678999999999871786538974799972442542220210232434317656885266326899
Q ss_pred HHHHHHHHHCCCHH---HH-HHH----HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 78899985023507---88-642----2328879992276555667675308999997479448970577
Q gi|254780487|r 72 PHLAAEIDGVIIDP---AT-INP----PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTS 133 (217)
Q Consensus 72 ~~~~~~~~~~~i~~---~~-~~~----~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~ 133 (217)
|....++....+.. .. .++ .....-+||+..|=. .+.. -....+.++..++.+++|.+..
T Consensus 182 p~~N~~LY~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g~i-~~eg-y~~llhai~~f~v~vviVLg~E 249 (415)
T KOG2749 182 PSTNLELYKALVSELAEVLKQRLSLNPEARVSGCIINTCGWI-EGEG-YAALLHAIKAFEVDVVIVLGQE 249 (415)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCEEEECCCEE-CCCC-HHHHHHHHHHCCCCEEEEECCH
T ss_conf 876889999999999999998742581110055487126314-1555-8999999997076489996647
No 108
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=95.95 E-value=0.0035 Score=39.37 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=26.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 29998358987479999999999840486120
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
-|++||- ||+|||+++.+|-+.|...|++-.
T Consensus 21 vlWlTGL-SGsGKsTiA~Al~~~L~~~G~~~~ 51 (187)
T TIGR00455 21 VLWLTGL-SGSGKSTIANALEKKLEKKGYRVY 51 (187)
T ss_pred EEEEECC-CCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 9851168-856357999999999996697499
No 109
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.91 E-value=0.0065 Score=37.67 Aligned_cols=25 Identities=44% Similarity=0.579 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 32999835898747999999999984
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
+-|+|+|. |++|||.++..|++.++
T Consensus 5 ~ii~i~Gp-TasGKs~la~~la~~~~ 29 (304)
T PRK00091 5 KLIVLVGP-TASGKTALAIELAKRLN 29 (304)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHCC
T ss_conf 77999898-86589999999999879
No 110
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=0.078 Score=30.91 Aligned_cols=142 Identities=15% Similarity=0.059 Sum_probs=80.4
Q ss_pred EEEECCCCCCCHHHHHHHHH---HHHHCCC-CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99983589874799999999---9984048-6120138873806899999855787311443001451034788999850
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALV---HALNAYY-WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG 80 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~---~~l~~~~-~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
-|--=.|+|.|||++|=.|+ .+++.+| .|.=.++..-.+|.+.+.+--+.+.+.+.+... +
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~-----Y---------- 78 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFD-----Y---------- 78 (528)
T ss_pred CEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEE-----C----------
T ss_conf 0368856888851188999972303430550122257763422778888756855876578760-----3----------
Q ss_pred CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 23507886422328879992276555667675308999997479448970577650457999999998479907999976
Q gi|254780487|r 81 VIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFI 160 (217)
Q Consensus 81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN 160 (217)
+++-+-|....|.- .+..++.+...+.+ ..+.|.++..|--.+++--.+.++.||++|.-+|--
T Consensus 79 -----------~~~~iNLLDTPGHe----DFSEDTYRtLtAvD-sAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNK 142 (528)
T COG4108 79 -----------ADCLVNLLDTPGHE----DFSEDTYRTLTAVD-SAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINK 142 (528)
T ss_pred -----------CCEEEECCCCCCCC----CCCHHHHHHHHHHH-EEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf -----------88488614799865----43236789998641-046898603586688999999985059846997502
Q ss_pred CCC--CC--CHHHHHHHHCCC
Q ss_conf 977--80--059999986199
Q gi|254780487|r 161 GDS--MP--KVEETIVKIGRI 177 (217)
Q Consensus 161 ~~~--~~--~~~~~le~~~~i 177 (217)
-+. .. ..-+.+|+..+|
T Consensus 143 lDR~~rdP~ELLdEiE~~L~i 163 (528)
T COG4108 143 LDREGRDPLELLDEIEEELGI 163 (528)
T ss_pred CCCCCCCHHHHHHHHHHHHCC
T ss_conf 365668868999999998577
No 111
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.89 E-value=0.057 Score=31.76 Aligned_cols=101 Identities=20% Similarity=0.181 Sum_probs=62.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCC-CCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99983589874799999999998404-86120138873806899999855787311443001451034788999850235
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAY-YWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~-~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
+-+.|+..|+|||+++.-|+.++... +.|-.- .|-|.+
T Consensus 2 i~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~l----vDldlq------------------------------------- 40 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLL----VDLDLQ------------------------------------- 40 (106)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEE----EECCCC-------------------------------------
T ss_conf 899728998668999999999999841993899----965467-------------------------------------
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCE---EEEEEEC
Q ss_conf 0788642232887999227655566767530899999747944897057765045799999999847990---7999976
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNIN---IIGIAFI 160 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~---i~GiIlN 160 (217)
-+.|++||....++-.....-...+| .+++|+.-.+-++-.+--.++.++..+.+ -.-+|+|
T Consensus 41 --------fGdd~VVvD~~~~~~~~~~~al~~ad-------~i~lv~~~~lp~lrn~kr~l~~l~~l~~~~~~ki~lVvN 105 (106)
T cd03111 41 --------FGDDYVVVDLGRSLDEVSLAALDQAD-------RVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLN 105 (106)
T ss_pred --------CCCCEEEECCCCCCCHHHHHHHHHCC-------EEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf --------79978999186553889999998679-------799980677489997999999999849997365699857
Q ss_pred C
Q ss_conf 9
Q gi|254780487|r 161 G 161 (217)
Q Consensus 161 ~ 161 (217)
+
T Consensus 106 R 106 (106)
T cd03111 106 R 106 (106)
T ss_pred C
T ss_conf 9
No 112
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.86 E-value=0.14 Score=29.27 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=64.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC----------CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 299983589874799999999998404861----------2013887380689999985578731144300145103478
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK----------PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPH 73 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K----------Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (217)
+|=|||+ +|+||++..-.|.+-|+..+.| |+ ||.--=.|-..++.+...+.-...+.|.. .....-
T Consensus 53 viGITG~-PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~-TGGsiLGDRiRM~~~~~~~~vFiRs~~sr--G~lGGl 128 (323)
T COG1703 53 VIGITGV-PGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF-TGGSILGDRIRMQRLAVDPGVFIRSSPSR--GTLGGL 128 (323)
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CCCCCCCCHHHHHHHCCCCCEEEEECCCC--CCCHHH
T ss_conf 7873179-9886688999999999977967899998899998-78530120766776446998178426877--651016
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 899985023507886422328879992276555667675308999997479448970577650
Q gi|254780487|r 74 LAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGT 136 (217)
Q Consensus 74 ~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~ 136 (217)
..+..+ .-...-..+||++|||.+|= +.+-++++..-+.-+++..+ +.|-
T Consensus 129 S~at~~-----~i~~ldAaG~DvIIVETVGv-------GQsev~I~~~aDt~~~v~~p-g~GD 178 (323)
T COG1703 129 SRATRE-----AIKLLDAAGYDVIIVETVGV-------GQSEVDIANMADTFLVVMIP-GAGD 178 (323)
T ss_pred HHHHHH-----HHHHHHHCCCCEEEEEECCC-------CCCHHHHHHHCCEEEEEECC-CCCC
T ss_conf 688999-----99999861898899981478-------84155776521668999657-8882
No 113
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=95.79 E-value=0.012 Score=35.96 Aligned_cols=35 Identities=37% Similarity=0.397 Sum_probs=31.4
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 83299983589874799999999998404861201388
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
.|.|=||||+ ||||+|..+.+.|+..|+|.+..|.
T Consensus 110 ~~~~aITGTn---GKtTTT~L~~~~L~~~G~~a~~gGN 144 (476)
T TIGR01087 110 AKVVAITGTN---GKTTTTSLLYHLLKAAGLKAVLGGN 144 (476)
T ss_pred CCEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 7379997268---6079999999999846997786257
No 114
>PRK12338 hypothetical protein; Provisional
Probab=95.76 E-value=0.037 Score=32.92 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=21.8
Q ss_pred CCCE--EEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9832--9998358987479999999999840
Q gi|254780487|r 1 MKLR--LVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 1 M~~~--i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
|++. |++.|| ||+||++++..|+.-|..
T Consensus 1 mr~PliILiGGt-SGvGKSTlAseLAsRLgI 30 (320)
T PRK12338 1 MRKPYVILIGSA-SGIGKSTIASEVARRLNI 30 (320)
T ss_pred CCCCEEEEEECC-CCCCHHHHHHHHHHHCCC
T ss_conf 997679997068-887688899999985198
No 115
>PRK04040 adenylate kinase; Provisional
Probab=95.75 E-value=0.16 Score=28.99 Aligned_cols=118 Identities=15% Similarity=0.067 Sum_probs=64.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHH-HCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 983299983589874799999999998404861201388738068999998-5578731144300145103478899985
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRI-GRIPKSHIIPEKWKLRTPASPHLAAEID 79 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (217)
|.|.++|+|- +|||||+++..+.+.++. .||-|. ..|.++-.-. .+...+.+.+-- .++....++
T Consensus 1 ~~k~VvvtGi-PGvGKTTv~~~~~~~l~~-~~~~vn-----~G~~M~e~A~~~glv~~RDemRk------L~~~~q~~l- 66 (189)
T PRK04040 1 MMKVVVVTGV-PGVGKTTVLNKALEKLKE-DYKIVN-----FGDVMLEVAKEEGLVEHRDEMRK------LPLEEQKEL- 66 (189)
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHHCC-CCEEEE-----HHHHHHHHHHHCCCCCCHHHHCC------CCHHHHHHH-
T ss_conf 9418999758-988789999999997235-875986-----77999999998177347788747------999999999-
Q ss_pred HCCCHHHHHHHH--HHCCEEEEECCCCCCCCCC-CCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 023507886422--3288799922765556676-7530899999747944897057765
Q gi|254780487|r 80 GVIIDPATINPP--DINDSIIIEGIGGLLVPLT-TEYLFIDLIERWQFPIILCARTSLG 135 (217)
Q Consensus 80 ~~~i~~~~~~~~--~~~D~viIEGagg~~~~~~-~~~~~~dla~~l~~~vILV~~~~~g 135 (217)
+. .+-.... .+...+||..=..+..|.. ...+-..+.+.|+..+|++.-++..
T Consensus 67 -Q~--~Aa~~I~~~~~~~~ViIDTHa~Iktp~GylpGLP~~Vl~~L~P~~ivlieA~P~ 122 (189)
T PRK04040 67 -QR--EAAERIAEMAGEGPVIVDTHATIKTPGGYLPGLPEWVLEELNPDVIVLIEADPD 122 (189)
T ss_pred -HH--HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCHH
T ss_conf -99--999999983578728994452002688677899899998669988999975889
No 116
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=95.72 E-value=0.024 Score=34.10 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=31.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCC
Q ss_conf 299983589874799999999998404861201388738
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEE 42 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~ 42 (217)
-+.-.|- +|||||++.--+++||++.||+ |+-|.-.|
T Consensus 452 IlClvGP-PGVGKTSlg~SIA~ALnRkFvR-~SlGG~~D 488 (941)
T TIGR00763 452 ILCLVGP-PGVGKTSLGKSIAKALNRKFVR-FSLGGVRD 488 (941)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHCCEEEE-EEECCCEE
T ss_conf 7872072-6954222789999996880499-95267220
No 117
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.62 E-value=0.025 Score=34.06 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=35.9
Q ss_pred CC-CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 98-32999835898747999999999984048612013887380689999985578731144300
Q gi|254780487|r 1 MK-LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKW 64 (217)
Q Consensus 1 M~-~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~ 64 (217)
|+ ++|+|.|. +|+|||+|...|++.|...|+ -|..-.+.....+...+.+.+..+..||
T Consensus 1 ~~~~a~VVmGV-sGsGKSTvg~~LA~~L~~~fi----egDd~Hp~~Ni~KM~~GiPL~D~DR~pW 60 (176)
T PRK09825 1 MAGESYILMGV-SGSGKSLIGSKIAALFSAKFI----DGDDLHPAKNIDKMSQGIPLTDEDRLPW 60 (176)
T ss_pred CCCCEEEEEEC-CCCCHHHHHHHHHHHHCCCEE----CCCCCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99857999828-989989999999999598776----2344378989999868999886679999
No 118
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.62 E-value=0.087 Score=30.62 Aligned_cols=115 Identities=18% Similarity=0.180 Sum_probs=53.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC-HHHHHHHHHHHCCC
Q ss_conf 99983589874799999999998404861201388738068999998557873114430014510-34788999850235
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTP-ASPHLAAEIDGVII 83 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i 83 (217)
|=|||- ||+|||+++-.|.+.|.......+..-...--|.... ...+. +... |-.+... ...++.+..++..+
T Consensus 2 IgVaG~-SGSGKTTv~~~i~~ifg~~~v~vI~~D~Yhr~dr~~r-~~~~~--t~~~--P~And~dll~~~l~~Lk~Gk~i 75 (273)
T cd02026 2 IGVAGD-SGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGR-KETGI--TALD--PRANNFDLMYEQLKALKEGQAI 75 (273)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHH-HHHCC--CCCC--CCHHHHHHHHHHHHHHHCCCCC
T ss_conf 899788-8786999999999985848769996577788998999-87187--7689--7523499999999999859953
Q ss_pred HHH---H-------HHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 078---8-------6422328879992276555667675308999997479448970577
Q gi|254780487|r 84 DPA---T-------INPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTS 133 (217)
Q Consensus 84 ~~~---~-------~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~ 133 (217)
..- + ...-+..|++|+||.-+++.+ ++...+++.+.++.+..
T Consensus 76 ~~PvYdh~tg~~~~~e~i~p~diII~EGLh~l~~~--------~lrdl~DLkIfVD~d~d 127 (273)
T cd02026 76 EKPIYNHVTGLIDPPELIKPTKIVVIEGLHPLYDE--------RVRELLDFSVYLDISDE 127 (273)
T ss_pred CCCCCCCCCCCCCCCEEECCCCEEEEECEECCCCH--------HHHHHHCEEEEECCCHH
T ss_conf 43222145896577565068747999220002668--------89866074688568764
No 119
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=95.58 E-value=0.01 Score=36.51 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
-|=||||+ |||+||..+.+.|+..|-|
T Consensus 90 viGvTGTN---GKTtt~~li~~~l~~~G~~ 116 (494)
T TIGR01085 90 VIGVTGTN---GKTTTTSLIAQLLELLGKK 116 (494)
T ss_pred EEEEEECC---CCHHHHHHHHHHHHHCCCE
T ss_conf 89997128---7448999999999867970
No 120
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=95.57 E-value=0.015 Score=35.31 Aligned_cols=101 Identities=21% Similarity=0.263 Sum_probs=58.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHHHHHHHHC-
Q ss_conf 29998358987479999999999840486120138873806899999855-7873114430014510347889998502-
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGR-IPKSHIIPEKWKLRTPASPHLAAEIDGV- 81 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 81 (217)
-|.|.|- +|+|||||+--|++-|. +|-|.+|. ++.++. +..+... +..+ .+..
T Consensus 2 ~I~ISGp-PGSGktTvA~~lA~~Ls---l~~iSaG~--------iRelA~~~Gldl~E------------~~~a-ee~~e 56 (173)
T TIGR02173 2 IITISGP-PGSGKTTVAKILAEKLS---LKLISAGD--------IRELAEKMGLDLAE------------SKYA-EENPE 56 (173)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHCC---CCEECCCH--------HHHHHHHCCCCHHH------------HHHH-CCCCC
T ss_conf 7887358-96864789999998639---83120200--------78898642988777------------3443-05863
Q ss_pred ---CCHHHHHHHHHHCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf ---35078864223288799922-765556676753089999974794489705
Q gi|254780487|r 82 ---IIDPATINPPDINDSIIIEG-IGGLLVPLTTEYLFIDLIERWQFPIILCAR 131 (217)
Q Consensus 82 ---~i~~~~~~~~~~~D~viIEG-agg~~~~~~~~~~~~dla~~l~~~vILV~~ 131 (217)
.++......+.+.+=+|+|| .+||.... +..-+|+.-+|+||.=.=+.
T Consensus 57 IDk~iD~~~~E~A~~~~nvvlEsrlagW~~~~--nG~yaD~~iyL~A~levRA~ 108 (173)
T TIGR02173 57 IDKKIDRRIREIAEKEKNVVLESRLAGWILKK--NGEYADVKIYLKAPLEVRAR 108 (173)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEHHHHHHCCC--CCCCCCEEEEECCCHHHHHH
T ss_conf 11675378855430489668852054331157--88967567886088333243
No 121
>COG4028 Predicted P-loop ATPase/GTPase [General function prediction only]
Probab=95.56 E-value=0.0089 Score=36.81 Aligned_cols=60 Identities=23% Similarity=0.455 Sum_probs=40.2
Q ss_pred EEEEEC-CCCCCCHHHHHHHHHHHHHCCCCCCEEC----------------CCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 299983-5898747999999999984048612013----------------887380689999985578731144300
Q gi|254780487|r 4 RLVIVG-TDTSVGKTIFASALVHALNAYYWKPIQS----------------GMYEETDSKTIHRIGRIPKSHIIPEKW 64 (217)
Q Consensus 4 ~i~I~G-T~t~vGKT~vs~~L~~~l~~~~~KPv~~----------------G~~~~~D~~~~~~~~~~~~~~~~~~~~ 64 (217)
+++|.| --+|+|||+.++-|+|+++...|||++- |.....|+..+ .......+....+|.
T Consensus 2 ~vLvvGlLp~DSGKTTfaL~lirg~dl~pfKP~~GhN~Wy~y~~l~rs~ElGllvg~DalKl-~vaes~~~i~~~nPv 78 (271)
T COG4028 2 RVLVVGLLPLDSGKTTFALSLIRGIDLFPFKPIAGHNAWYSYNTLIRSEELGLLVGNDALKL-KVAESIDRIELENPV 78 (271)
T ss_pred EEEEEEEEECCCCCEEEEEEEHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHCCEECHHHHHH-HHHCCCCCCEECCCE
T ss_conf 69998311237886168734101001002566567530577145345265372323255543-012023430342850
No 122
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.44 E-value=0.033 Score=33.28 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=29.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 3299983589874799999999998404861201388
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
+.|-||||+ |||++|..+.+.|+..+++|+..|.
T Consensus 113 ~~IaVTGTn---GKTTTt~ll~~iL~~~g~~~~~~GN 146 (450)
T PRK02472 113 PIIGITGSN---GKTTTTTLIAEMLNAGGQHGLLAGN 146 (450)
T ss_pred CEEEEECCC---CCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 789982799---9731999999999974997399941
No 123
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.44 E-value=0.051 Score=32.09 Aligned_cols=126 Identities=19% Similarity=0.048 Sum_probs=69.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCC--EE--CCCCCCCHHHHHHHHHCC--CCCCC--CCCCCCCCCCHHHHHH
Q ss_conf 2999835898747999999999984048612--01--388738068999998557--87311--4430014510347889
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKP--IQ--SGMYEETDSKTIHRIGRI--PKSHI--IPEKWKLRTPASPHLA 75 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP--v~--~G~~~~~D~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~ 75 (217)
+++|.|- .|+|||+.|.-|+.-+-.+|+|- +- .|..+-..+.++....-. ..+.. .+.-..|....+|...
T Consensus 75 ~vmvvG~-vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~isP~~~ 153 (398)
T COG1341 75 VVMVVGP-VDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSISPQGF 153 (398)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCEEEEECCCCCCC
T ss_conf 8999898-676788999999988764474189996899976667974677412567777777758652279851477777
Q ss_pred HHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 99850235078864223288799922765556676753089999974794489705
Q gi|254780487|r 76 AEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCAR 131 (217)
Q Consensus 76 ~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~ 131 (217)
....-..+......+.+..|++||...| |-.+...-..-..++...+..-|++..
T Consensus 154 ~~~~i~~v~rL~~~a~~~~~~ilIdT~G-Wi~G~~g~elk~~li~~ikP~~Ii~l~ 208 (398)
T COG1341 154 PGRYIAGVARLVDLAKKEADFILIDTDG-WIKGWGGLELKRALIDAIKPDLIIALE 208 (398)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCC-CEECCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 6899999999999865168779996998-430742789999988650977899931
No 124
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=95.44 E-value=0.013 Score=35.70 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=24.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
=|+|||- |||||||+-++|+-.++....+
T Consensus 129 LiLVTGP-TGSGKSTTlAsmIDyIN~~~~~ 157 (350)
T TIGR01420 129 LILVTGP-TGSGKSTTLASMIDYINKNKAG 157 (350)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHHCCCCC
T ss_conf 3898768-8986789999999787403888
No 125
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=95.42 E-value=0.045 Score=32.43 Aligned_cols=117 Identities=20% Similarity=0.140 Sum_probs=56.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCC-EE----CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH-
Q ss_conf 999835898747999999999984048612-01----388738068999998557873114430014510347889998-
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKP-IQ----SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEI- 78 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP-v~----~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (217)
|-|+|- +++|||+++-.|++.++..+-++ +. -|+. ..+..+... +... ..=.|+.|....-......+
T Consensus 37 IgIaG~-pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH-~~~~~L~~~--~~~~--rkGaP~TFD~~~l~~~L~~Lk 110 (230)
T PRK09270 37 VGIAGP-PGAGKSTLAETLWEALSQQGPELPAIQVPMDGFH-LDNAVLDAR--GLRA--RKGAPETFDVAGLAELLRRLR 110 (230)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCC-CCHHHHHHC--CCCC--CCCCCCCCCHHHHHHHHHHHH
T ss_conf 999899-9889999999999998623799857997365334-572555435--4743--379910216988999999985
Q ss_pred HHC-CC-HHHHH-----------HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 502-35-07886-----------4223288799922765556676753089999974794489705
Q gi|254780487|r 79 DGV-II-DPATI-----------NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCAR 131 (217)
Q Consensus 79 ~~~-~i-~~~~~-----------~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~ 131 (217)
.+. .+ ...|. ......+++||||.-=+. ...-+.++...++..+.+=++
T Consensus 111 ~~~~~v~~P~yD~~~~d~~~~~~~i~~~~~IVIvEGnyLLl----d~~~W~~l~~~~D~~ifvd~~ 172 (230)
T PRK09270 111 EGDCEVYWPVFDRQLEDPVADAIVVGPTARLVIVEGNYLLL----DDEPWRRLAGFFDFSIFLDAP 172 (230)
T ss_pred CCCCCEEECCCCCCCCCCCCCCEEECCCCCEEEEECEEEEC----CCCCHHHHHHHHCEEEEEECC
T ss_conf 68971752134322457788953666998689993447613----783289999863767998489
No 126
>PTZ00301 uridine kinase; Provisional
Probab=95.40 E-value=0.036 Score=33.03 Aligned_cols=164 Identities=16% Similarity=0.075 Sum_probs=71.9
Q ss_pred CCC-EEEEECCCCCCCHHHHHHHHHHHHHCCC-CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHH-------
Q ss_conf 983-2999835898747999999999984048-6120138873806899999855787311443001451034-------
Q gi|254780487|r 1 MKL-RLVIVGTDTSVGKTIFASALVHALNAYY-WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPAS------- 71 (217)
Q Consensus 1 M~~-~i~I~GT~t~vGKT~vs~~L~~~l~~~~-~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 71 (217)
|.. -|=|||- |++|||+++..|+..+...+ -..++. -..|..+ ..... .+........|.+|.+
T Consensus 1 m~~~iIgIaGg-SgSGKTT~a~~i~~~l~~~~~~~~v~i---i~~D~Yy-~d~~~--~~~~~~~~~NfDhP~a~D~dLl~ 73 (210)
T PTZ00301 1 MPCTVIGISGA-SGSGKSSLSTNIVSELMAHCGPVSIGV---ICEDFYY-RDQSN--IPESERAYTNYDHPKSLEHDLLT 73 (210)
T ss_pred CCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCCEEE---EECCCCC-CCCCC--CCHHHCCCCCCCCCCCCCHHHHH
T ss_conf 99889999688-767899999999999876149980799---8367667-78765--88656278899982303699999
Q ss_pred HHHHHHHHHCCCHH---HHH--------HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf 78899985023507---886--------4223288799922765556676753089999974794489705776504579
Q gi|254780487|r 72 PHLAAEIDGVIIDP---ATI--------NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHS 140 (217)
Q Consensus 72 ~~~~~~~~~~~i~~---~~~--------~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~ 140 (217)
.++.+...+..+.. .|. ..-+..+++||||...++.+ .+...++..+.+=++. +.
T Consensus 74 ~~L~~Lk~Gk~I~~P~Ydf~~h~R~~~~~~i~p~~vIIvEGi~~l~~~--------~lr~l~DlkIFvd~~~------di 139 (210)
T PTZ00301 74 THLRELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNA--------ELRNEMDCLIFVDTPL------DI 139 (210)
T ss_pred HHHHHHHCCCCEECCCCCCCCCCCCCCEEEECCCCEEEEEEEHHCCCH--------HHHHHHCEEEEECCCH------HH
T ss_conf 999999769963446655567766797089668856999710430789--------8997742457734872------37
Q ss_pred HHHHHHH---HHCCCEEEEEEEC--CCCCCCHHHHHHHHCC-CCEEEEECCCC
Q ss_conf 9999999---8479907999976--9778005999998619-98999947888
Q gi|254780487|r 141 LLSLETL---RNRNINIIGIAFI--GDSMPKVEETIVKIGR-IPHLGRLPKID 187 (217)
Q Consensus 141 ~l~~~~~---~~~g~~i~GiIlN--~~~~~~~~~~le~~~~-ipvLG~iP~~~ 187 (217)
.+.-... +.||-.+..|+-. +.-.|.+++.++-... .-+ +||+..
T Consensus 140 rl~RRi~RDv~eRGr~~e~Vi~qy~~~V~P~~~~fI~P~k~~ADi--IIp~~~ 190 (210)
T PTZ00301 140 CLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADI--IVPSWK 190 (210)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCCHHHHCCCE--EECCCC
T ss_conf 889988877887588999999999966230588768051633618--978999
No 127
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.38 E-value=0.078 Score=30.91 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=29.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 3299983589874799999999998404861201388
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
+.|-||||+ |||++|.-|.+.|+..+++++..|.
T Consensus 118 ~~IaVTGTn---GKTTTtsmi~~iL~~~g~~~~~gGN 151 (458)
T PRK01710 118 KVFGITGSD---GKTTTTTLIYEMLKEEGYKTWVGGN 151 (458)
T ss_pred CEEEEECCC---CCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 779993689---8478999999999984997585166
No 128
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.31 E-value=0.044 Score=32.46 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=20.2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9998358987479999999999840
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
|-|+|- |++|||+++-.|.+.|+.
T Consensus 2 IgI~G~-sgsGKTT~a~~L~~~l~~ 25 (198)
T cd02023 2 IGIAGG-SGSGKTTVAEEIIEQLGN 25 (198)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf 898899-988599999999998099
No 129
>PRK03839 putative kinase; Provisional
Probab=95.28 E-value=0.02 Score=34.55 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 3299983589874799999999998
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
+.|.|||| +|+|||+++-.|+..+
T Consensus 1 M~I~ITGT-PGtGKTTva~~La~~l 24 (180)
T PRK03839 1 MIIAITGT-PGVGKTTISKLLAEKL 24 (180)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHH
T ss_conf 98999789-9999899999999976
No 130
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.24 E-value=0.24 Score=27.88 Aligned_cols=145 Identities=18% Similarity=0.208 Sum_probs=80.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 299983589874799999999998404861-2013887380689999985578731144300145103478899985023
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK-PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI 82 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (217)
++...|-++|+||++..+-++..+...+.| -..+| +++-.+.-.++-.+..... +.+.+....-......
T Consensus 83 SvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSG--EES~~QIk~RA~RLg~~~~--~l~l~set~le~Il~~----- 153 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG--EESPEQIKLRADRLGISTE--NLYLLAETNLEDILAS----- 153 (372)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--HHHHHHHHHHHHHHCCCCC--CCEEEECCCHHHHHHH-----
T ss_conf 179982599886889999999999863993899824--5678999989998587887--7278843569999999-----
Q ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCCCC------------CCHHHHHHHHCCCEEEEECC-CCCHH------HHHHHH
Q ss_conf 507886422328879992276555667675------------30899999747944897057-76504------579999
Q gi|254780487|r 83 IDPATINPPDINDSIIIEGIGGLLVPLTTE------------YLFIDLIERWQFPIILCART-SLGTI------NHSLLS 143 (217)
Q Consensus 83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~------------~~~~dla~~l~~~vILV~~~-~~g~i------~~~~l~ 143 (217)
. ...+.|++||+..=-++.+.... ....++||..+.+++||+.. +.|.+ .|-.-+
T Consensus 154 ----i--~~~kP~~lIIDSIQT~~~~~~~s~pGsvsQVReca~~L~~~AK~~~i~~~lVGHVTK~G~iAGPkvLEHmVDt 227 (372)
T cd01121 154 ----I--EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDT 227 (372)
T ss_pred ----H--HHHCCCEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHEEEEEE
T ss_conf ----9--9719988999562202037767799878999999999999998619739999876268863774031002136
Q ss_pred HHHHH---HCCCEEEEEEECCCC
Q ss_conf 99998---479907999976977
Q gi|254780487|r 144 LETLR---NRNINIIGIAFIGDS 163 (217)
Q Consensus 144 ~~~~~---~~g~~i~GiIlN~~~ 163 (217)
+-+++ ....++.=.+=|+..
T Consensus 228 Vl~fEgd~~~~~R~LR~~KNRFG 250 (372)
T cd01121 228 VLYFEGDRHSEYRILRSVKNRFG 250 (372)
T ss_pred EEEECCCCCCCEEEEEEECCCCC
T ss_conf 88751577655035674115677
No 131
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.18 E-value=0.12 Score=29.84 Aligned_cols=34 Identities=32% Similarity=0.319 Sum_probs=29.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 3299983589874799999999998404861201388
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
+.|-||||+ |||++|..+.+-|+..++++...|.
T Consensus 110 ~~IaVTGTn---GKTTTt~ll~~iL~~~g~~~~~~GN 143 (459)
T PRK02705 110 PWVGITGTN---GKTTVTHLLAHILQAAGLNAPMCGN 143 (459)
T ss_pred CEEEEECCC---CCHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 757771789---7278999999999983998536401
No 132
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.16 E-value=0.23 Score=27.95 Aligned_cols=117 Identities=18% Similarity=0.127 Sum_probs=61.9
Q ss_pred CC--CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHH-HHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 98--32999835898747999999999984048612013887380689999-9855787311443001451034788999
Q gi|254780487|r 1 MK--LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIH-RIGRIPKSHIIPEKWKLRTPASPHLAAE 77 (217)
Q Consensus 1 M~--~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (217)
|+ |.+.|+|- +|||||+|+--..+.+ ..+|-|. +.|.++-. .-.+.....+.+- ..|... ...
T Consensus 1 mk~~kvvvitGV-pGvGKTTVl~~~~~~l--~~~~ivN-----yG~~Mle~A~k~glve~rD~~R----klp~e~--Q~~ 66 (189)
T COG2019 1 MKGRKVVVITGV-PGVGKTTVLKIALKEL--VKHKIVN-----YGDLMLEIAKKKGLVEHRDEMR----KLPLEN--QRE 66 (189)
T ss_pred CCCCEEEEEECC-CCCCHHHHHHHHHHHH--HHCEEEE-----HHHHHHHHHHHHCCCCCHHHHH----CCCHHH--HHH
T ss_conf 997559999757-9887266999999877--5220000-----7699999999838720289885----298889--999
Q ss_pred HHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCC-CCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 8502350788642232887999227655566767-530899999747944897057765
Q gi|254780487|r 78 IDGVIIDPATINPPDINDSIIIEGIGGLLVPLTT-EYLFIDLIERWQFPIILCARTSLG 135 (217)
Q Consensus 78 ~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~-~~~~~dla~~l~~~vILV~~~~~g 135 (217)
+ ...+-.+..+...-+||.+-+.+-.|... ..+=..+...++.++|++.-++..
T Consensus 67 l----q~~Aa~rI~~~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~ 121 (189)
T COG2019 67 L----QAEAAKRIAEMALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPE 121 (189)
T ss_pred H----HHHHHHHHHHHHCCEEEECCCEECCCCCCCCCCCHHHHHHCCCCEEEEEECCHH
T ss_conf 9----999999999742065873241114787667788399997529887999937989
No 133
>PRK07429 phosphoribulokinase; Provisional
Probab=95.12 E-value=0.15 Score=29.19 Aligned_cols=117 Identities=20% Similarity=0.204 Sum_probs=51.9
Q ss_pred CCCE---EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC-HHHHHHH
Q ss_conf 9832---99983589874799999999998404861201388738068999998557873114430014510-3478899
Q gi|254780487|r 1 MKLR---LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTP-ASPHLAA 76 (217)
Q Consensus 1 M~~~---i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 76 (217)
|+++ |=||| +|++|||+++-.|.+.|.....--+......--|... +...+. +.. .|-.+... ...|+.+
T Consensus 4 m~~rP~IIGIAG-gSGSGKTTv~r~I~~~fg~~~VtvI~~DdYhk~dr~~-r~~~~~--t~l--hP~And~dLl~e~L~~ 77 (331)
T PRK07429 4 MPDRPVIIGVAG-DSGCGKSTFLRRLADLFGEELVTVICLDDYHSLDRKQ-RKEIGI--TAL--DPRANNFDLMYEQLKA 77 (331)
T ss_pred CCCCCEEEEEEC-CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH-HHHCCC--CCC--CCCHHCHHHHHHHHHH
T ss_conf 999998999857-8877899999999998388877999478677788788-987189--878--9640059999999999
Q ss_pred HHHHCCCHHH---H-------HHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 9850235078---8-------64223288799922765556676753089999974794489705
Q gi|254780487|r 77 EIDGVIIDPA---T-------INPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCAR 131 (217)
Q Consensus 77 ~~~~~~i~~~---~-------~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~ 131 (217)
...+..+..- + ...-+..+++||||.-.++.+ ++...++..|.+-.+
T Consensus 78 Lk~Gk~I~~PvYdh~tg~~~~~~~I~P~~vIIvEGLh~L~~~--------~lR~l~DlKIFVD~d 134 (331)
T PRK07429 78 LKTGQPILKPIYNHETGKIDPPEYIKPNKIVVVEGLHPLYDE--------RVRDLYDFKVYLDPP 134 (331)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCHHCCCH--------HHHHHCCEEEEECCC
T ss_conf 985997256523564787788666068867999161212879--------899754937996487
No 134
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.09 E-value=0.046 Score=32.36 Aligned_cols=117 Identities=22% Similarity=0.220 Sum_probs=51.6
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCC-EE----CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHH-HHHHHHH
Q ss_conf 999835898747999999999984048612-01----38873806899999855787311443001451034-7889998
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKP-IQ----SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPAS-PHLAAEI 78 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP-v~----~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 78 (217)
|=|||. |++|||+++-.|.+.+....-.+ |+ .|... .+......-. ..... .|..|....- .++..-.
T Consensus 2 IGIaG~-sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f~~-~~~~l~~~~~--~~~~g--~P~afD~~ll~~~L~~Lk 75 (220)
T cd02025 2 IGIAGS-VAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY-PNKELIERGL--MDRKG--FPESYDMEALLKFLKDIK 75 (220)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC-CCHHHHHHHH--HHHCC--CCHHCCHHHHHHHHHHHH
T ss_conf 897889-98779999999999860026999489997878757-8522888646--65169--930215999999999997
Q ss_pred HHC-CCH-HHHH-----------HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 502-350-7886-----------422328879992276555667675308999997479448970
Q gi|254780487|r 79 DGV-IID-PATI-----------NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCA 130 (217)
Q Consensus 79 ~~~-~i~-~~~~-----------~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~ 130 (217)
.+. .+. ..|. ......|++||||.--++.+... ...+...++..+.+=+
T Consensus 76 ~G~~~V~~PvYd~~~~~r~~~~~~~i~~~~IiIvEGi~~L~~~~~~---~~~i~dl~D~kIfvD~ 137 (220)
T cd02025 76 SGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNP---RLFVSDFFDFSIYVDA 137 (220)
T ss_pred CCCCCEEEEECCCHHCCCCCCCEEEECCCCEEEEEEEEEECCCCCC---HHHHHHHCCEEEEECC
T ss_conf 5998534010121212578984287269986998323220165211---1456754657898079
No 135
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.03 E-value=0.098 Score=30.30 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=28.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 3299983589874799999999998404861201388
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
+-|-||||+ |||++|..+.+.|+..+++....|.
T Consensus 109 ~iIaVTGTn---GKTTTtsli~~iL~~~g~~~~~gGN 142 (438)
T PRK04663 109 PVIAITGSN---GKSTVTDLTGVMAKAAGVKVAVGGN 142 (438)
T ss_pred CEEEEECCC---CHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 789994899---8289999999999828997068721
No 136
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.99 E-value=0.032 Score=33.32 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=29.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 3299983589874799999999998404861201388
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
+.|-||||+ |||++|..+.+.|+..+++++..|.
T Consensus 111 ~~IaVTGTn---GKTTTtsli~~iL~~~g~~~~~~GN 144 (445)
T PRK04308 111 KVIAITGSN---GKTTVTSLVGYLCIKCGLDTVIAGN 144 (445)
T ss_pred CEEEEECCC---CCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 579994899---8377999999999975996299850
No 137
>PRK13768 GTPase; Provisional
Probab=94.96 E-value=0.29 Score=27.36 Aligned_cols=146 Identities=14% Similarity=0.081 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC-------C--CCCCCHHH------HHHHHHCCCCCCCCCCCCC
Q ss_conf 9832999835898747999999999984048612013-------8--87380689------9999855787311443001
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS-------G--MYEETDSK------TIHRIGRIPKSHIIPEKWK 65 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~-------G--~~~~~D~~------~~~~~~~~~~~~~~~~~~~ 65 (217)
|...++|.|+ .|+|||+.+.++-+.++..+.++... - .+.+.|.. .+..-.+..+.-..+
T Consensus 1 M~~~~~ViGp-aGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIRd~i~~~dVM~~~~LGPNGali---- 75 (253)
T PRK13768 1 MMYIVFFLGT-AGSGKTTLVGALSDWLEEQGYDVAIVNLDPAVEYLPYKPDIDVREYVSAREIMRKYGLGPNGALI---- 75 (253)
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHH----
T ss_conf 9718999899-99988999999999999769975999789866589999886378617899999881989646899----
Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH----CCCEEEEECCCC-----C
Q ss_conf 4510347889998502350788642-23288799922765556676753089999974----794489705776-----5
Q gi|254780487|r 66 LRTPASPHLAAEIDGVIIDPATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDLIERW----QFPIILCARTSL-----G 135 (217)
Q Consensus 66 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dla~~l----~~~vILV~~~~~-----g 135 (217)
.+.+.-...+++...++ ..+.|++|+...|=+-- .....+...+...| ..-++.+.++.. .
T Consensus 76 --------~~~e~l~~~~d~l~~~i~~~~~dY~i~D~PGQiEl-ft~~~~~~~i~~~L~~~~~~~~v~l~D~~~~~~~~~ 146 (253)
T PRK13768 76 --------ASVDLLLTKAEEIKEEIERLDADYVLVDTPGQMEL-FAFRESGRYLVEKLSSGSKSLSVYLIDAVLAKDPSD 146 (253)
T ss_pred --------HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEE-EECCHHHHHHHHHHHCCCCEEEEEEECHHHHCCHHH
T ss_conf --------99999999899999998515887599826874432-223407999999986368628999845056378879
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 04579999999984799079999769
Q gi|254780487|r 136 TINHSLLSLETLRNRNINIIGIAFIG 161 (217)
Q Consensus 136 ~i~~~~l~~~~~~~~g~~i~GiIlN~ 161 (217)
-++..+++...+-+.+++..- |+|+
T Consensus 147 fiS~~L~a~s~m~~l~lP~in-VlsK 171 (253)
T PRK13768 147 FVSLLLLALSVQLRLGLPQIP-VLNK 171 (253)
T ss_pred HHHHHHHHHHHHHHCCCCEEE-EEEH
T ss_conf 999999999999973999799-8676
No 138
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=94.91 E-value=0.3 Score=27.29 Aligned_cols=113 Identities=19% Similarity=0.137 Sum_probs=61.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE----------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CHH
Q ss_conf 3299983589874799999999998404861201----------38873806899999855787311443001451-034
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ----------SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRT-PAS 71 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~----------~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 71 (217)
.+|=|||+ +|+||++..-.|++.++..+.| |+ +|.--=.|-..+...+..+.-...+.+..-.. ..+
T Consensus 30 ~~iGiTG~-PGaGKStli~~l~~~~~~~g~~-vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~srg~lGGls 107 (267)
T pfam03308 30 HRVGITGV-PGAGKSTLIEALGMELRRRGHR-VAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSPSRGALGGLS 107 (267)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 59987689-9887999999999999968986-899997899988886300107777650589985886457788888714
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf 7889998502350788642232887999227655566767530899999747944897057
Q gi|254780487|r 72 PHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART 132 (217)
Q Consensus 72 ~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~ 132 (217)
.. ..+.....-..++|++|||.+|= +.+-.+++..-+.-+++..+.
T Consensus 108 ~~--------t~~~i~lleaaGfD~IivETVGV-------GQsE~~v~~~aD~~llv~~Pg 153 (267)
T pfam03308 108 RA--------TREAILLLDAAGFDVIIIETVGV-------GQSEVDIANMADTFVLVTIPG 153 (267)
T ss_pred HH--------HHHHHHHHHHCCCCEEEEECCCC-------CCCCHHHHHHCCEEEEEECCC
T ss_conf 76--------99999999977999999924777-------753035554157689995588
No 139
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.91 E-value=0.19 Score=28.49 Aligned_cols=34 Identities=29% Similarity=0.124 Sum_probs=28.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 3299983589874799999999998404861201388
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
|-|-||||+ |||++|..+.+.|+..+.+++..|.
T Consensus 123 ~iIaVTGTn---GKTTTt~li~~iL~~~g~~~~~~GN 156 (501)
T PRK02006 123 KVLAITGTN---GKTTTTSLTGLLCERAGKKVAVAGN 156 (501)
T ss_pred CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 489993899---6687999999999976997465256
No 140
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.85 E-value=0.31 Score=27.18 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=78.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 299983589874799999999998404861-2013887380689999985578731144300145103478899985023
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK-PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI 82 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (217)
++...|-++|+||++..+-++..+..++ | -..+| +++-.+.-.++-....... +.+.+....-......
T Consensus 91 S~iLlgGePGIGKSTLlLQ~a~~la~~~-~vLYvSG--EES~~Qik~RA~RLg~~~~--~l~l~~et~l~~Il~~----- 160 (454)
T PRK11823 91 SVVLIGGDPGIGKSTLLLQVAAALAAGG-KVLYVSG--EESLQQIKLRAERLGLPSD--NLYLLAETNLEDILAT----- 160 (454)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEECC--CHHHHHHHHHHHHHCCCCC--CCEEEECCCHHHHHHH-----
T ss_conf 4899507998889999999999985599-5799815--0157899999997588888--7378853689999999-----
Q ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCCCC------------CCHHHHHHHHCCCEEEEECC-CCCHH------HHHHHH
Q ss_conf 507886422328879992276555667675------------30899999747944897057-76504------579999
Q gi|254780487|r 83 IDPATINPPDINDSIIIEGIGGLLVPLTTE------------YLFIDLIERWQFPIILCART-SLGTI------NHSLLS 143 (217)
Q Consensus 83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~------------~~~~dla~~l~~~vILV~~~-~~g~i------~~~~l~ 143 (217)
. ...+.|++||+..=-++++.... ....++||..+.+++||+.. +.|.+ .|-.-+
T Consensus 161 ----i--~~~~P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG~iAGPkvLEHmVDt 234 (454)
T PRK11823 161 ----I--EEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELTRLAKQSGIAVFLVGHVTKEGAIAGPRVLEHMVDT 234 (454)
T ss_pred ----H--HHHCCCEEEEECHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHCE
T ss_conf ----9--8609988999431115415667789978999999999999997449828999977267764661452220104
Q ss_pred HHHHH---HCCCEEEEEEECCCC
Q ss_conf 99998---479907999976977
Q gi|254780487|r 144 LETLR---NRNINIIGIAFIGDS 163 (217)
Q Consensus 144 ~~~~~---~~g~~i~GiIlN~~~ 163 (217)
+-+++ ....++.=.+=|+..
T Consensus 235 Vl~fEGd~~~~~RiLR~~KNRFG 257 (454)
T PRK11823 235 VLYFEGDRHSRFRILRAVKNRFG 257 (454)
T ss_pred EEEECCCCCCCCEEEEEECCCCC
T ss_conf 68751576655024563124677
No 141
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.82 E-value=0.039 Score=32.77 Aligned_cols=34 Identities=35% Similarity=0.375 Sum_probs=29.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 3299983589874799999999998404861201388
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
+-|-||||+ |||++|..+.+.|+..+.+++..|.
T Consensus 118 ~~IaVTGTn---GKTTttsli~~iL~~~g~~~~~~GN 151 (487)
T PRK03369 118 RWLVVTGTN---GKTTTTSMLHAMLRAAGRRSVLCGN 151 (487)
T ss_pred CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 559997988---7278999999999858998599813
No 142
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.80 E-value=0.041 Score=32.69 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=28.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 99983589874799999999998404861201388
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
|-||||+ |||++|..+.+.|+..|++++..|.
T Consensus 126 IaVTGTn---GKTTTtsli~~iL~~~g~~~~~~GN 157 (476)
T PRK00141 126 LAVTGTN---GKTTTTAMLAAMMQAGGFAAVAVGN 157 (476)
T ss_pred EEEECCC---CHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8896899---6798999999999837997289950
No 143
>PRK05480 uridine kinase; Provisional
Probab=94.78 E-value=0.043 Score=32.51 Aligned_cols=28 Identities=36% Similarity=0.456 Sum_probs=20.7
Q ss_pred CCCEE--EEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 98329--998358987479999999999840
Q gi|254780487|r 1 MKLRL--VIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 1 M~~~i--~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
|++.+ -|+|. |++|||+++-.|...|+.
T Consensus 3 ~k~P~iIgIaG~-SgSGKTT~a~~L~~~l~~ 32 (209)
T PRK05480 3 MKQPIIIGIAGG-SGSGKTTVASTIYEELGD 32 (209)
T ss_pred CCCCEEEEEECC-CCCCHHHHHHHHHHHCCC
T ss_conf 889889999899-977899999999998086
No 144
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family; InterPro: IPR005700 The bacterial exopolysaccharide transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed at least seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.; GO: 0015542 sugar efflux transmembrane transporter activity, 0006859 extracellular carbohydrate transport.
Probab=94.78 E-value=0.32 Score=27.07 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=85.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC----------CCCEEC---------CCCC--CCHHHHHHHHHCCCCC-CCCC
Q ss_conf 2999835898747999999999984048----------612013---------8873--8068999998557873-1144
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYY----------WKPIQS---------GMYE--ETDSKTIHRIGRIPKS-HIIP 61 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~----------~KPv~~---------G~~~--~~D~~~~~~~~~~~~~-~~~~ 61 (217)
-+-+++..+++||+.|+..+.+.+-.++ -||-.+ |..+ -+...+...+.....+ ...+
T Consensus 563 vv~~~~p~p~~Gks~i~an~aaliA~ggkR~llidad~rk~~l~q~~~~~~~~GL~d~LaG~rs~~~~~~~~~~~~l~~l 642 (778)
T TIGR01005 563 VVALASPLPDVGKSIIEANLAALIAAGGKRVLLIDADIRKAALSQILVKAEKSGLLDLLAGERSLELDVKAEVAAKLDIL 642 (778)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 58856888866568899999999832687178732677605556442147888537556424656630340236771123
Q ss_pred C-C--CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEE-EEECCCCCHH
Q ss_conf 3-0--0145103478899985023507886422328879992276555667675308999997479448-9705776504
Q gi|254780487|r 62 E-K--WKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPII-LCARTSLGTI 137 (217)
Q Consensus 62 ~-~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vI-LV~~~~~g~i 137 (217)
. . ..+.+..+..++.. ............+|+++|.-+-= ..--....+..+-.-+. ||+..+...+
T Consensus 643 ~~GGas~~~h~~~eLLasp----a~~~l~~~ar~~~D~vvvd~~~~------~pV~d~~a~a~la~~~lslvt~~~r~~~ 712 (778)
T TIGR01005 643 DAGGASLLRHNSSELLASP----AMVELVENARSAYDLVVVDVAAV------APVADAKALAALADLVLSLVTEYDRSVV 712 (778)
T ss_pred HCCCCCCCCCCCCHHHCCH----HHHHHHHHHHHHCCEEEECCCHH------HHHHHHHHHHHCCCEEEHHEEEECCEEH
T ss_conf 3476124788841532166----88999998865188577455312------4899999974224200200111144104
Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCH
Q ss_conf 579999999984799079999769778005
Q gi|254780487|r 138 NHSLLSLETLRNRNINIIGIAFIGDSMPKV 167 (217)
Q Consensus 138 ~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~ 167 (217)
...--.++-+...|.++.|||||.-.+.+.
T Consensus 713 ~~~r~~~~~~~~~n~~v~gV~ln~ldpn~~ 742 (778)
T TIGR01005 713 ELVRELLKSLSRLNSEVLGVVLNKLDPNEL 742 (778)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCH
T ss_conf 442887754453186045665045575201
No 145
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=94.69 E-value=0.33 Score=26.94 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=62.0
Q ss_pred CCCCCCCCHHHHHHHHCCCEEE--------------------------------EECCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf 6676753089999974794489--------------------------------70577650457999999998479907
Q gi|254780487|r 107 VPLTTEYLFIDLIERWQFPIIL--------------------------------CARTSLGTINHSLLSLETLRNRNINI 154 (217)
Q Consensus 107 ~~~~~~~~~~dla~~l~~~vIL--------------------------------V~~~~~g~i~~~~l~~~~~~~~g~~i 154 (217)
.|....-+..|+++.|++.++- |++ |--++.+++.-.....+.++
T Consensus 212 ~p~L~aPrV~DIa~~L~A~vL~g~e~ldR~V~~vvV~Am~v~N~L~~L~~GsLVITP---GDRsDIil~~~~a~~~~~~~ 288 (702)
T PRK05632 212 SPDLIAPRVIDIAKHLGATVINGGDLLTRRVRSVTVCARSIPNMLEHLKPGSLVVTP---GDRSDVILAACLAAMNGVPI 288 (702)
T ss_pred CCCCCCCCHHHHHHHHCCEEECCCCHHCCEEEEEEEEEEECHHHHHCCCCCCEEECC---CCHHHHHHHHHHHHCCCCCE
T ss_conf 600278829999998398996575210246504999970055556106899579816---85789999999984169980
Q ss_pred EEEEECCCCCC--CHHHHHHHH--CCCCEEEE-----------------ECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997697780--059999986--19989999-----------------478888888799999997133999999999
Q gi|254780487|r 155 IGIAFIGDSMP--KVEETIVKI--GRIPHLGR-----------------LPKIDPIDPDVLHQKFQEHFTQSLLQKYFY 212 (217)
Q Consensus 155 ~GiIlN~~~~~--~~~~~le~~--~~ipvLG~-----------------iP~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 212 (217)
.|+++++...+ ...+.++.+ +++|||-+ ||..+.-..+..-..+++|++...|.....
T Consensus 289 agi~ltgg~~~~~~i~~l~~~~~~~~lpil~~~~~t~~ta~~l~~~~~~i~~~~~~ki~~~~~~~~~~vd~~~l~~~~~ 367 (702)
T PRK05632 289 AGLLLTGGYEPDPRIAKLCEGAFETGLPILSVDTNTYQTALRLQSFNLEVPVDDHERIETVLELVASHVDTDWLESRLA 367 (702)
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 5999618989878999999864238988799568769999999745787898989999999999997379999999865
No 146
>PRK13695 putative NTPase; Provisional
Probab=94.68 E-value=0.048 Score=32.22 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 98329998358987479999999999840
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
|+++|||||- +|||||++..-++..|+.
T Consensus 2 ~~~kI~iTG~-PGvGKTTli~Kv~~~L~~ 29 (174)
T PRK13695 2 AALRIGITGM-PGVGKTTLVLKIAELLAR 29 (174)
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHHHH
T ss_conf 8429998789-998899999999999863
No 147
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.68 E-value=0.23 Score=27.91 Aligned_cols=130 Identities=16% Similarity=0.241 Sum_probs=66.2
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHC-CCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8329998358987479999999999840-486120138873806899999855787311443001451034788999850
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNA-YYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG 80 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~-~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
.|-+||+|- +.+|||..+-.|+..... .+| ++|+.+-|.+ .-.++....... +..| .....|.
T Consensus 1 gmi~LVtGG-~rSGKS~~AE~la~~~~~~~~Y--iAT~~~~D~E--m~~RI~~Hr~~R--~~~w--~TiE~p~------- 64 (170)
T PRK05800 1 GMLILVTGG-ARSGKSRFAERLAAQSGLQVLY--IATAQPLDDE--MAARIAHHRQRR--PAHW--QTVEEPL------- 64 (170)
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHCCCCEEE--EECCCCCCHH--HHHHHHHHHHCC--CCCC--EEEECCC-------
T ss_conf 989999798-7634899999999856998299--9758888878--999999999737--8995--7996466-------
Q ss_pred CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH----------HHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHHHH
Q ss_conf 23507886422328879992276555667675308----------9999974794489705-77650457999999998
Q gi|254780487|r 81 VIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLF----------IDLIERWQFPIILCAR-TSLGTINHSLLSLETLR 148 (217)
Q Consensus 81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~----------~dla~~l~~~vILV~~-~~~g~i~~~~l~~~~~~ 148 (217)
.+...........|++|||..+.+.......... .+..+....++|+|++ .+.|.+-...++-.+.+
T Consensus 65 -~l~~~l~~~~~~~~~vLlDclt~wl~N~l~~~~~~~~~~~~~~ll~~l~~~~~~~ViVsnEVG~Givp~~~~~R~frd 142 (170)
T PRK05800 65 -DLAELLRADAAPGRCVLVDCLTTWVTNLLFEDGEEAIAAEIEALLAALQRLPAKIILVSNEVGMGIVPEYRLGRRFRD 142 (170)
T ss_pred -CHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf -789999874577886872267899999875023667999999999999827997899977867778899879999999
No 148
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=94.65 E-value=0.091 Score=30.49 Aligned_cols=108 Identities=21% Similarity=0.290 Sum_probs=66.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEECCC-CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH-HHH
Q ss_conf 89874799999999998404861201388-7380689999985578731144300145103478899985023507-886
Q gi|254780487|r 11 DTSVGKTIFASALVHALNAYYWKPIQSGM-YEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDP-ATI 88 (217)
Q Consensus 11 ~t~vGKT~vs~~L~~~l~~~~~KPv~~G~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~ 88 (217)
+.|+|||+.---++..++..+=-.|-.|- .-..|+..+++... ......+-...|+.|..=.-.++. ...
T Consensus 42 spGSGKT~LiEk~~~~~~~~~K~Avi~GD~~t~~DA~RlR~~G~--------~a~~~nTGk~CHLdA~mv~G~~~~L~~~ 113 (225)
T TIGR00073 42 SPGSGKTTLIEKLIERLDDEVKIAVIEGDVQTKNDADRLRKYGV--------PAIQINTGKECHLDAHMVAGAIHALKDL 113 (225)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCC--------EEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 88611589999999984578978999755322556999986498--------6886368864440166786587554216
Q ss_pred HHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 422328879992276555667675308999997479448970577
Q gi|254780487|r 89 NPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTS 133 (217)
Q Consensus 89 ~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~ 133 (217)
.+.+..|+++||=+|-+-+|..+++=-.. .|++++-..
T Consensus 114 ~ld~~~DlL~IENVGNLvCP~~FdLGe~~-------rVvllSVTE 151 (225)
T TIGR00073 114 PLDDISDLLLIENVGNLVCPADFDLGEHM-------RVVLLSVTE 151 (225)
T ss_pred CCCCCCCEEEEEECCCCEECCCCCCCCCC-------EEEEEEECC
T ss_conf 88871462688644761006731123563-------079998658
No 149
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.59 E-value=0.041 Score=32.67 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=28.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 99983589874799999999998404861201388
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
|-||||+ |||++|..+.+.|+..++|++..|.
T Consensus 125 IaVTGTn---GKTTTtsli~~iL~~~g~~~~~~GN 156 (481)
T PRK01438 125 LAVTGTN---GKTTTVQMLASILRAAGLRAAAVGN 156 (481)
T ss_pred EEEECCC---CCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9993899---7460999999999966997079962
No 150
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=94.57 E-value=0.032 Score=33.36 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=77.7
Q ss_pred EEEECCCCCCCH----HHHHHHHHHHHHC-----------CCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 999835898747----9999999999840-----------4861201388738068999998557873114430014510
Q gi|254780487|r 5 LVIVGTDTSVGK----TIFASALVHALNA-----------YYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTP 69 (217)
Q Consensus 5 i~I~GT~t~vGK----T~vs~~L~~~l~~-----------~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (217)
|=|+|. |+||| |+|+.-|+..++. .||||..-+. ...........++|+.+-. .-
T Consensus 13 igI~Gg-SgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~--------~~~~~r~~~NfDHP~AfD~-~L 82 (220)
T TIGR00235 13 IGISGG-SGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSD--------LEMAERKKTNFDHPDAFDN-DL 82 (220)
T ss_pred EEECCC-CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC--------HHHHHHHCCCCCCCHHCCH-HH
T ss_conf 970176-6101567899999999998314001457750324458898873--------1246431258898003037-99
Q ss_pred HHHHHHHHHHHCCCHH---HH---HH-H-----HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf 3478899985023507---88---64-2-----23288799922765556676753089999974794489705776504
Q gi|254780487|r 70 ASPHLAAEIDGVIIDP---AT---IN-P-----PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTI 137 (217)
Q Consensus 70 ~~~~~~~~~~~~~i~~---~~---~~-~-----~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i 137 (217)
...|+.....+..++. .| .+ . -...++||+||.+-+.+ .++....++.+.+=++.+.- +
T Consensus 83 l~~Hl~nLk~g~~~~~P~Ydyv~HtRv~~eT~~~~P~~VvIlEGi~~l~D--------~Rl~~L~dlkifvDt~~D~r-l 153 (220)
T TIGR00235 83 LYEHLKNLKNGSAIDVPVYDYVNHTRVKKETVHVEPKDVVILEGILLLTD--------ERLRDLMDLKIFVDTPLDIR-L 153 (220)
T ss_pred HHHHHHHHHCCCEECCCCCCCCCEECCCCCCEEECCEEEEEEECCHHHHH--------HHHHHHHCCEEEEECCCHHH-H
T ss_conf 99999998468802245425410020255626873506899706188887--------99988718236774683032-5
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEC--CCCCCCHHHHHHHHCC-CCEEEEECCC
Q ss_conf 57999999998479907999976--9778005999998619-9899994788
Q gi|254780487|r 138 NHSLLSLETLRNRNINIIGIAFI--GDSMPKVEETIVKIGR-IPHLGRLPKI 186 (217)
Q Consensus 138 ~~~~l~~~~~~~~g~~i~GiIlN--~~~~~~~~~~le~~~~-ipvLG~iP~~ 186 (217)
-.=+- .=...||=++-+||-- ..-.|.+...+|...+ .=+ +||+-
T Consensus 154 iRRl~--RD~~~RGR~~dSvI~Qy~~~V~Pm~~~FvEP~K~~AD~--IiP~g 201 (220)
T TIGR00235 154 IRRLE--RDIEERGRSLDSVIDQYRKTVRPMYLQFVEPTKQYADL--IIPEG 201 (220)
T ss_pred HHHHH--HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCE--EECCC
T ss_conf 65656--55754289788999999985346210145501014667--62589
No 151
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.51 E-value=0.086 Score=30.63 Aligned_cols=35 Identities=31% Similarity=0.363 Sum_probs=29.0
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 83299983589874799999999998404861201388
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
.+-+-||||+ |||++|..+.+.|+..|++....|.
T Consensus 110 ~p~vaITGTN---GKTTTTsli~~~l~~~G~~~~lgGN 144 (448)
T COG0771 110 APIVAITGTN---GKTTTTSLIAHLLKAAGLDALLGGN 144 (448)
T ss_pred CCEEEEECCC---CHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 9989997999---6288999999999855998321351
No 152
>PRK08006 replicative DNA helicase; Provisional
Probab=94.50 E-value=0.37 Score=26.66 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 3299983589874799999999998
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
..++|.|-.+++|||+.++.+++..
T Consensus 224 G~LiviaaRPsmGKTalalnia~~~ 248 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENA 248 (471)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7389999469987699999999999
No 153
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.47 E-value=0.21 Score=28.28 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=28.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 3299983589874799999999998404861201388
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
+-|-||||+ |||++|..+.+.|+..+++....|.
T Consensus 106 ~iIaVTGTn---GKTTTt~li~~iL~~~g~~~~~gGN 139 (438)
T PRK03806 106 PIVAITGSN---GKSTVTTLVGEMAKAAGVNVGVGGN 139 (438)
T ss_pred CEEEEECCC---CCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 889994899---8489999999999865997567715
No 154
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=94.44 E-value=0.24 Score=27.90 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=23.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 329998358987479999999999840486120
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
+.+|++| .+|+|||+++..+...+..+++..|
T Consensus 13 kai~laG-~pGAGKS~~~~~~~~~~~~~~~v~I 44 (191)
T pfam06414 13 VAVLLGG-QPGAGKTELARALLEELGGGNVVRI 44 (191)
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 7999957-9988889999999875378993897
No 155
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.43 E-value=0.033 Score=33.26 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHH
Q ss_conf 3299983589874799999999
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALV 24 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~ 24 (217)
+.|.|||| +|+|||++|-.|.
T Consensus 1 m~I~ITGT-PGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGT-PGVGKTTVCKLLR 21 (180)
T ss_pred CEEEEECC-CCCCHHHHHHHHH
T ss_conf 93799379-9986687999999
No 156
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.42 E-value=0.39 Score=26.55 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=55.3
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 32999835898747999999999984048612013887380689999985578731144300145103478899985023
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI 82 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (217)
+.+|+.|. ||+|||+.+.++++.+-..|+.-+-. .. ..++..+.... +... .
T Consensus 184 ~nLlf~G~-~G~GKTfLa~~IA~ell~~g~sViy~----ta-~~L~~~l~~~~----------~~~~------------~ 235 (330)
T PRK06835 184 ENLLFYGN-TGTGKTFLSNCIAKELLDRGKTVIYR----TS-DELIENLREIR----------FNND------------N 235 (330)
T ss_pred CCEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEE----EH-HHHHHHHHHHH----------CCCC------------C
T ss_conf 86698899-99988999999999999879949996----29-99999999975----------4576------------4
Q ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH--H-HCCCEEEEECCCCCHHHHHH
Q ss_conf 50788642232887999227655566767530899999--7-47944897057765045799
Q gi|254780487|r 83 IDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE--R-WQFPIILCARTSLGTINHSL 141 (217)
Q Consensus 83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~--~-l~~~vILV~~~~~g~i~~~~ 141 (217)
-.......-..+|++||.-.|--...........++.- . -+.|+|+-++.....+...+
T Consensus 236 ~~~~~~~~l~~~DLLIIDDLG~E~~t~~~~~~Lf~iIN~R~~~~k~tIITTNl~~~eL~~~y 297 (330)
T PRK06835 236 DAPELEDLLINCDLLIIDDLGTESITEFSKTELFNLINKRLLMNKKMIISTNLSLEELLKTY 297 (330)
T ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
T ss_conf 48999999961898997210345588689999999999998679997998899989999987
No 157
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.40 E-value=0.13 Score=29.51 Aligned_cols=92 Identities=25% Similarity=0.343 Sum_probs=55.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEECCCC-CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 5898747999999999984048612013887-380689999985578731144300145103478899985023507886
Q gi|254780487|r 10 TDTSVGKTIFASALVHALNAYYWKPIQSGMY-EETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDPATI 88 (217)
Q Consensus 10 T~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~-~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 88 (217)
.++|+|||++-...++.|+..+--.|--|-. -+.|+..++...- +.. ...+....|+.+.. +..++.
T Consensus 111 sSPGSGKTtLLe~ti~~L~~~~~~aVIeGD~~T~~DA~RI~~~Gv---~av-----QInTG~~CHLDA~M----V~~al~ 178 (290)
T PRK10463 111 SSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGT---PAI-----QVNTGKGCHLDAQM----IADAAP 178 (290)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCC---CEE-----EECCCCCCCCCHHH----HHHHHH
T ss_conf 699878899999999987336757999604235667999997699---589-----95479976759999----999998
Q ss_pred HHH-HHCCEEEEECCCCCCCCCCCCC
Q ss_conf 422-3288799922765556676753
Q gi|254780487|r 89 NPP-DINDSIIIEGIGGLLVPLTTEY 113 (217)
Q Consensus 89 ~~~-~~~D~viIEGagg~~~~~~~~~ 113 (217)
.+. ...|+++||-+|.+..|..+++
T Consensus 179 ~l~l~~~dllfIENVGNLVCPA~FDL 204 (290)
T PRK10463 179 RLPLDDNGILFIENVGNLVCPASFDL 204 (290)
T ss_pred HCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 48987798999812788435512036
No 158
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=94.39 E-value=0.077 Score=30.94 Aligned_cols=60 Identities=25% Similarity=0.273 Sum_probs=36.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCC-CCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9998358987479999999999840486-120138873806899999855787311443001
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYW-KPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWK 65 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~-KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~ 65 (217)
|.|.|+ .|+|||+|+..|++-|..-|= -++.-|-.=.+-+-.-+...+.+.+..+.-||.
T Consensus 1 ~VlmGv-aG~GKs~~a~~l~~~lg~iyPd~~yieGDdLHP~~Ni~KMs~GiPL~DdDR~pWL 61 (175)
T TIGR01313 1 FVLMGV-AGSGKSTIASALAHRLGDIYPDAKYIEGDDLHPAANIEKMSRGIPLNDDDRWPWL 61 (175)
T ss_pred CEEECC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 967602-7862889999999985431578875688666787779873178888701204379
No 159
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.35 E-value=0.047 Score=32.31 Aligned_cols=31 Identities=35% Similarity=0.463 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 98329998358987479999999999840486
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
|+++||..|- +|+|||+|.-.|++.++..++
T Consensus 1 M~~~I~LiG~-mGsGKstiGk~LA~~L~~~fi 31 (172)
T PRK03731 1 MTQPLFLVGP-RGCGKTTVGMALAQALGYRFV 31 (172)
T ss_pred CCCCEEEECC-CCCCHHHHHHHHHHHHCCCEE
T ss_conf 9998899889-999889999999998599979
No 160
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.34 E-value=0.056 Score=31.81 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=29.3
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 3299983589874799999999998404861201388
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
+-|-||||+ |||++|..+.+.|+..++++...|.
T Consensus 105 ~~IaITGTn---GKTTTt~li~~iL~~~g~~~~~~GN 138 (450)
T PRK01368 105 KFIAITGTN---GKSTTTALISHILNSNGLDYPVAGN 138 (450)
T ss_pred CEEEEECCC---CCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 779996899---9748999999999975996289625
No 161
>PRK08233 hypothetical protein; Provisional
Probab=94.33 E-value=0.24 Score=27.86 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=19.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 2999835898747999999999984
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
-|=|+|- |++|||+++-.|...+.
T Consensus 5 IIgIaGg-SgSGKTtla~~l~~~l~ 28 (182)
T PRK08233 5 IITIAAV-SGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHCC
T ss_conf 9999688-86789999999999746
No 162
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=94.25 E-value=0.42 Score=26.32 Aligned_cols=144 Identities=15% Similarity=0.128 Sum_probs=66.6
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCEEC-------CC--CCCCHHH---HHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9835898747999999999984048612013-------88--7380689---9999855787311443001451034788
Q gi|254780487|r 7 IVGTDTSVGKTIFASALVHALNAYYWKPIQS-------GM--YEETDSK---TIHRIGRIPKSHIIPEKWKLRTPASPHL 74 (217)
Q Consensus 7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~-------G~--~~~~D~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (217)
|.|+ .|+|||+.+.++.+.++..+.++... .. +.+.|.. ...+.... +.+-+.-+--.
T Consensus 1 ViGp-aGSGKTT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIrd~i~~~dvM~~---------~~LGPNGali~ 70 (234)
T pfam03029 1 VVGG-AGSGKTTFVGALSEILPLRGRSVYVVNLDPAAENLPYEADIDIRELITVADVMED---------YGLGPNGALTV 70 (234)
T ss_pred CCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHH---------CCCCCCHHHHH
T ss_conf 9898-9898899999999999977997599978986658999877717874679999998---------29897389999
Q ss_pred HHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH---CCCEEEEECCCC-----CHHHHHHHHHHH
Q ss_conf 999850235078864223288799922765556676753089999974---794489705776-----504579999999
Q gi|254780487|r 75 AAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERW---QFPIILCARTSL-----GTINHSLLSLET 146 (217)
Q Consensus 75 ~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l---~~~vILV~~~~~-----g~i~~~~l~~~~ 146 (217)
+.+.-...+++....+....|++|+...|=+.- .....+...+...| +.-++.++++.. .-++..+++...
T Consensus 71 ~me~l~~~~d~l~~~l~~~~~y~l~DtPGQiEl-f~~~~~~~~i~~~L~~~~~~~v~l~D~~~~~d~~~fis~~L~a~s~ 149 (234)
T pfam03029 71 AMDFGRITLDWLLEELEYEDDYYLFDTPGQIEL-FTHWDSLARGVEALEASRLGAVYLVDTRRLTDPIDFFSGLLYALSI 149 (234)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEE-EECCHHHHHHHHHHHCCCEEEEEEECHHHHCCHHHHHHHHHHHHHH
T ss_conf 999999999999998525577699836983576-5400269999999712873899984257746888899999999999
Q ss_pred HHHCCCEEEEEEECCC
Q ss_conf 9847990799997697
Q gi|254780487|r 147 LRNRNINIIGIAFIGD 162 (217)
Q Consensus 147 ~~~~g~~i~GiIlN~~ 162 (217)
+-+.+++..- ++|+.
T Consensus 150 m~~l~lP~vn-vlsK~ 164 (234)
T pfam03029 150 MLRLGLPFVV-ALNKF 164 (234)
T ss_pred HHHCCCCEEE-EECCH
T ss_conf 9974899443-10004
No 163
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=94.18 E-value=0.36 Score=26.77 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=26.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 32999835898747999999999984048612
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKP 34 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP 34 (217)
|-|-|+-=.-|||||+++.-|+++|-..|+|-
T Consensus 122 kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RV 153 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRV 153 (405)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 28999788877659999999999999779988
No 164
>PRK08118 topology modulation protein; Reviewed
Probab=94.14 E-value=0.062 Score=31.54 Aligned_cols=27 Identities=33% Similarity=0.628 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 98329998358987479999999999840
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
|. +|.|.|+ +|+|||+.+-.|.+.+..
T Consensus 1 M~-rI~IiG~-~GsGKSTlAr~L~~~~~i 27 (167)
T PRK08118 1 MK-KIILIGS-GGSGKSTLARQLGEKLNI 27 (167)
T ss_pred CC-EEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf 96-7999889-998799999999998896
No 165
>PRK08840 replicative DNA helicase; Provisional
Probab=94.13 E-value=0.44 Score=26.17 Aligned_cols=33 Identities=36% Similarity=0.433 Sum_probs=23.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 299983589874799999999998404861201
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ 36 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~ 36 (217)
.++|.|-.+++|||+.++.+++..-...-|||.
T Consensus 218 ~LiviaaRPsmGKTalalnia~n~a~~~~~~v~ 250 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVL 250 (464)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 679998379873689999999999996599679
No 166
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=94.10 E-value=0.075 Score=31.02 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=27.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 29998358987479999999999840486120
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
+++|+|. +|+|||+++-.|+..+...+++|+
T Consensus 2 ~v~i~G~-~~sGKttl~~~L~~~~~~~g~~~~ 32 (122)
T pfam03205 2 IVLVVGP-KDSGKTTLIRKLLNYLKRRGYRVA 32 (122)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 7999948-999899999999999998799448
No 167
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=94.09 E-value=0.15 Score=29.17 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=26.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 2999835898747999999999984048612
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKP 34 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP 34 (217)
.|.|+|+ .++||++.+-.|..++++.+=+|
T Consensus 84 IIgiaGs-vavGKST~ar~L~~ll~~~~~~~ 113 (283)
T COG1072 84 IIGIAGS-VAVGKSTTARILQALLSRWPESP 113 (283)
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9996057-66557789999999996388987
No 168
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.07 E-value=0.052 Score=32.01 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=26.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 32999835898747999999999984048612
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKP 34 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP 34 (217)
+.|-||||+ |||++|..+.+.|+..+++|
T Consensus 109 ~~IaVtGTn---GKTTtT~ll~~il~~~g~~~ 137 (459)
T PRK00421 109 TSIAVAGTH---GKTTTTSLLAHVLAEAGLDP 137 (459)
T ss_pred CEEEEECCC---CCCHHHHHHHHHHHHCCCCC
T ss_conf 649997788---86118999999999769987
No 169
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.05 E-value=0.084 Score=30.72 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=27.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 329998358987479999999999840486120138
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG 38 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G 38 (217)
+-|-||||+ |||++|..+.+.|+..+++.+..|
T Consensus 115 ~iIaVTGTn---GKTTTtsli~~iL~~~g~~~~~gG 147 (457)
T PRK01390 115 PFIAITGTN---GKSTTTALIAHLLRQAGRDVQMGG 147 (457)
T ss_pred CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 889992899---649899999999997399869966
No 170
>PRK08694 consensus
Probab=94.03 E-value=0.41 Score=26.37 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=25.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 299983589874799999999998404861201
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ 36 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~ 36 (217)
.++|.|-.+++|||+.++-+++..-..+-+||.
T Consensus 219 ~LiVIaaRPsmGKTalalnia~~~a~~~~~~V~ 251 (468)
T PRK08694 219 DLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVA 251 (468)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 479996178653789999999999984798479
No 171
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.97 E-value=0.088 Score=30.58 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=28.3
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 3299983589874799999999998404861201388
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
|.|-||||+ |||++|..|.+-|+..++|.+..|.
T Consensus 116 k~IaVTGTN---GKTTTt~ll~~iL~~~g~~~~~~GN 149 (468)
T PRK04690 116 GAVCVTGTK---GKSTTTALLAHLLRAAGHRTALVGN 149 (468)
T ss_pred CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 789996998---5899999999999857998289867
No 172
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=93.94 E-value=0.34 Score=26.90 Aligned_cols=27 Identities=41% Similarity=0.497 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8329998358987479999999999840
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
.+.++|+|+ |.||||..+..|++.+..
T Consensus 3 ~~~i~I~GP-TAsGKT~lai~LAk~~~~ 29 (308)
T COG0324 3 PKLIVIAGP-TASGKTALAIALAKRLGG 29 (308)
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHCCC
T ss_conf 637999898-875778999999998299
No 173
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=93.77 E-value=0.067 Score=31.31 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=25.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 32999835898747999999999984048612
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKP 34 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP 34 (217)
..|-||||| ||||+|+-|+..++..+.-|
T Consensus 109 ~~iaVaGtH---GKTTTTamia~~~~~aGLdP 137 (491)
T TIGR01082 109 ESIAVAGTH---GKTTTTAMIAVILKEAGLDP 137 (491)
T ss_pred CEEEEECCC---CCHHHHHHHHHHHHHCCCCC
T ss_conf 707998368---72568999999998449997
No 174
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.76 E-value=0.11 Score=29.98 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=28.7
Q ss_pred CCC--EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 983--29998358987479999999999840486120
Q gi|254780487|r 1 MKL--RLVIVGTDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 1 M~~--~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
|.| -|++||- +|+|||+++-.|.+.|+..+.+.+
T Consensus 1 ~~kg~viWltGl-sgSGKTTia~~l~~~L~~~~~~~~ 36 (175)
T PRK00889 1 MQRGVTVWFTGL-SGAGKTTISHALAEKLRARGYPVE 36 (175)
T ss_pred CCCCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 998889998898-999999999999999998699679
No 175
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.70 E-value=0.53 Score=25.67 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 29998358987479999999999
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHA 26 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~ 26 (217)
.+.|.|-.+++|||+.++-++..
T Consensus 195 ~LiIiaARPsmGKTafalnia~n 217 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAEN 217 (421)
T ss_pred CEEEEEEECCCCHHHHHHHHHHH
T ss_conf 68999854678745999999999
No 176
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.66 E-value=0.54 Score=25.63 Aligned_cols=120 Identities=15% Similarity=0.125 Sum_probs=57.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE-ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 29998358987479999999999840486120-13887380689999985578731144300145103478899985023
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI-QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI 82 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv-~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (217)
...|+|- +|+|||++++-++......+.|.+ -++ +.-.+..+.++.+.......-+...+. +.+. .+. ...
T Consensus 25 itei~G~-pG~GKTtl~lq~a~~~~~~g~~vlYidt--E~~~~er~~qi~~~~~~~~~~~i~~~~-~~~~---~~~-~~~ 96 (224)
T PRK09361 25 ITQIYGP-PGSGKTNICIQLAVEAARQGKKVIYIDT--EGLSPERFKQIAGEDFEELLSNIIIFE-PSSF---EEQ-REA 96 (224)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEECC--CCCCHHHHHHHHCCCHHHHHHCCEEEC-CCCH---HHH-HHH
T ss_conf 9999899-9985999999999999974990999678--767889999985657345420614724-7988---999-999
Q ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCCCC----C----------CHHHHHHHHCCCEEEEEC
Q ss_conf 507886422328879992276555667675----3----------089999974794489705
Q gi|254780487|r 83 IDPATINPPDINDSIIIEGIGGLLVPLTTE----Y----------LFIDLIERWQFPIILCAR 131 (217)
Q Consensus 83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~----~----------~~~dla~~l~~~vILV~~ 131 (217)
+.....-..++.+++||...-.++..-... . ...++|+..+.+|+++.-
T Consensus 97 i~~~~~~~~~~~~lvVIDSi~~~~~~e~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vvl~nq 159 (224)
T PRK09361 97 IQKAEKIAKENVGLIVLDSATSLYRLELDDNDNSKLNRELGKQISHLLSLARKHNIAVVITNQ 159 (224)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 999998750587389996230100000145765899999999999999999971986999966
No 177
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.63 E-value=0.089 Score=30.56 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=25.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 299983589874799999999998404861201
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ 36 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~ 36 (217)
+|.|+| .-|||||++++.|++.|...+.+ |.
T Consensus 1 kia~~G-KGGvGKtt~~~~la~~l~~~g~~-vl 31 (116)
T cd02034 1 KIAITG-KGGVGKTTIAALLARYLAEKGKP-VL 31 (116)
T ss_pred CEEEEC-CCCCCHHHHHHHHHHHHHHCCCE-EE
T ss_conf 978988-99774999999999999978996-99
No 178
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=93.58 E-value=0.17 Score=28.82 Aligned_cols=129 Identities=19% Similarity=0.245 Sum_probs=64.8
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999835898747999999999984-0486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALN-AYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~-~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
|||+|- ..+|||..+--|+..+. ..+| ++|+.+.|. ..-.++....... +..| .....|...
T Consensus 1 iLVtGG-~rSGKS~~AE~la~~~~~~~~Y--iAT~~~~D~--Em~~RI~~Hr~~R--~~~w--~tiE~~~~l-------- 63 (166)
T pfam02283 1 ILVTGG-ARSGKSRFAERLALASGGPVVY--IATAQAFDD--EMAERIARHRARR--PAGW--TTIEEPLDL-------- 63 (166)
T ss_pred CEEECC-CCCCHHHHHHHHHHHCCCCEEE--EECCCCCCH--HHHHHHHHHHHCC--CCCC--EEEECCCCH--------
T ss_conf 988688-7733899999999855998199--976988888--9999999999718--9996--799774459--------
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCC--------CH---HHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHHHHHCC
Q ss_conf 078864223288799922765556676753--------08---9999974794489705-77650457999999998479
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEY--------LF---IDLIERWQFPIILCAR-TSLGTINHSLLSLETLRNRN 151 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~--------~~---~dla~~l~~~vILV~~-~~~g~i~~~~l~~~~~~~~g 151 (217)
...... ....+.+|||..+.+........ .. .+..+....++|+|++ .+.|.+-...++-.+.+..|
T Consensus 64 ~~~l~~-~~~~~~vLiDclt~wl~N~l~~~~~~~~~~~~~~~ll~~l~~~~~~~ViVsnEvG~Givp~~~~~R~f~d~lG 142 (166)
T pfam02283 64 AEALAR-LPGGDVVLVDCLTLWLTNLLFAGDDEEDIEAEVDELLAALKARPAPVVLVSNEVGLGIVPENALGRRFRDLLG 142 (166)
T ss_pred HHHHHH-CCCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999984-6989869997177899998762374778999999999999748997999976767887589878999999999
No 179
>PRK07263 consensus
Probab=93.57 E-value=0.56 Score=25.53 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=20.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 299983589874799999999998
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
.++|.|..+++|||+.++-+++-.
T Consensus 204 dLiviaaRPsmGKTa~alnia~~i 227 (453)
T PRK07263 204 QLIILAARPAVGKTAFVLNIAQNV 227 (453)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 689997278884789999999999
No 180
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.46 E-value=0.07 Score=31.21 Aligned_cols=34 Identities=29% Similarity=0.238 Sum_probs=28.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 3299983589874799999999998404861201388
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
+.|-||||+ |||++|..+.+-|+..+++.+..|.
T Consensus 103 ~~IaITGTN---GKTTTt~ll~~iL~~~g~~~~~~GN 136 (418)
T PRK00683 103 PSLGITGST---GKTTTILFLEHLLRTLGIPAFAMGN 136 (418)
T ss_pred CEEEEECCC---CCEEHHHHHHHHHHHCCCCCEEEEC
T ss_conf 879997689---8660999999999867998188803
No 181
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.46 E-value=0.1 Score=30.21 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=28.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 3299983589874799999999998404861201388
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
+.|-||||+ |||++|..+.+-|+..+++.+..|.
T Consensus 110 ~~IaVTGTn---GKTTTtsli~~iL~~~g~~~~~gGN 143 (448)
T PRK03803 110 PIVAITGSN---AKSTVTTLVGEMAKAAGKRVAVGGN 143 (448)
T ss_pred CEEEECCCC---CHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 889985899---8388999999999865983799403
No 182
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.43 E-value=0.35 Score=26.80 Aligned_cols=27 Identities=26% Similarity=0.259 Sum_probs=20.8
Q ss_pred CCC-EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 983-2999835898747999999999984
Q gi|254780487|r 1 MKL-RLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 1 M~~-~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
|-. -++|.|| ||||||+++..|++-+.
T Consensus 1 ~~~~iiligG~-sGvGKStla~~lA~rlg 28 (197)
T PRK12339 1 MESTIHFIGGI-PGVGKTSISGYIARHRA 28 (197)
T ss_pred CCCEEEEEECC-CCCCHHHHHHHHHHHCC
T ss_conf 97479998579-98878999999999749
No 183
>PRK06761 hypothetical protein; Provisional
Probab=93.28 E-value=0.11 Score=29.88 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 98329998358987479999999999840486
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
|+|-|||=|- +|+|||+.+--|+..|+..+.
T Consensus 1 m~kLIiIEGl-PGsGKSTta~~l~d~L~~~g~ 31 (281)
T PRK06761 1 MTKLIIIEGL-PGFGKSTTAHLLNDKLSQLKI 31 (281)
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf 9617999668-999801499999999986698
No 184
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=93.26 E-value=0.1 Score=30.22 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=27.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 329998358987479999999999840486120
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
+.|+|.|| ||+|||.+---|++.+|.+|=|.|
T Consensus 209 Qh~L~~GT-tG~GKs~~lr~LL~~iR~rGd~AI 240 (613)
T TIGR02759 209 QHILIHGT-TGSGKSVALRKLLRWIRQRGDRAI 240 (613)
T ss_pred CCEEEECC-CCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 25266454-174389999999999986398589
No 185
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.26 E-value=0.63 Score=25.22 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=21.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHH-HHCCCCC
Q ss_conf 29998358987479999999999-8404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHA-LNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~-l~~~~~K 33 (217)
.+.|.|-.|++|||++++-++.. ....+.|
T Consensus 31 eL~viaarpg~GKT~f~~~~a~~~~~~~g~~ 61 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVR 61 (271)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 0899996899869999999999999976990
No 186
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=93.26 E-value=0.62 Score=25.28 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=37.1
Q ss_pred HCCEEEEECCCCCCCCCCCCCCHHHHHH-HHCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 2887999227655566767530899999-7479-448970577650457999999998479907999976977
Q gi|254780487|r 93 INDSIIIEGIGGLLVPLTTEYLFIDLIE-RWQF-PIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDS 163 (217)
Q Consensus 93 ~~D~viIEGagg~~~~~~~~~~~~dla~-~l~~-~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~ 163 (217)
++.+.+|+..|.- +. ..++.+ .-.+ -+|||+++..|-..+|.-.+..++..|++..-|.+|+.-
T Consensus 64 ~~~~~~IDtPGH~------dF-~~~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D 129 (195)
T cd01884 64 NRHYAHVDCPGHA------DY-IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKAD 129 (195)
T ss_pred CEEEEECCCCCHH------HH-HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 8169962689607------78-889986351136268998527787478999999999809996279996877
No 187
>PRK06217 hypothetical protein; Validated
Probab=93.24 E-value=0.1 Score=30.16 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=23.3
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 3299983589874799999999998404
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAY 30 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~ 30 (217)
|+|+|.|.+ |+|||+.+..|++.+...
T Consensus 2 ~rI~i~G~s-GsGkSTla~~La~~l~~~ 28 (185)
T PRK06217 2 MRIHITGAS-GSGTTTLGAALAEALDLP 28 (185)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHCCC
T ss_conf 679997899-887899999999975989
No 188
>KOG2004 consensus
Probab=93.16 E-value=0.33 Score=26.97 Aligned_cols=30 Identities=37% Similarity=0.578 Sum_probs=23.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 3299983589874799999999998404861
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
|-+...|- +|||||++.-.++++|++.||.
T Consensus 439 kIlCf~GP-PGVGKTSI~kSIA~ALnRkFfR 468 (906)
T KOG2004 439 KILCFVGP-PGVGKTSIAKSIARALNRKFFR 468 (906)
T ss_pred CEEEEECC-CCCCCCCHHHHHHHHHCCCEEE
T ss_conf 37998689-9877321899999984874699
No 189
>PRK06904 replicative DNA helicase; Validated
Probab=93.09 E-value=0.67 Score=25.06 Aligned_cols=33 Identities=36% Similarity=0.447 Sum_probs=24.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 299983589874799999999998404861201
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ 36 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~ 36 (217)
.++|.|-.+++|||+.++.+++-.-..+-+||.
T Consensus 222 ~LiViAaRPsmGKTa~alnia~n~A~~~~~~V~ 254 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVL 254 (472)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 579997379875689999999999995599579
No 190
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.07 E-value=0.61 Score=25.29 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=53.0
Q ss_pred EEEECCCCCCCHHHHHHHHHH-HHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCC-C--CCC----CCCCCHHHHHHH
Q ss_conf 999835898747999999999-98404861201388738068999998557873114-4--300----145103478899
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVH-ALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHII-P--EKW----KLRTPASPHLAA 76 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~-~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~-~--~~~----~~~~~~~~~~~~ 76 (217)
-+|+|. +|+|||+.++-++. +++. +-|-+=-. .++.-..+..+.....-+... . ... .+.....+....
T Consensus 2 tLi~G~-pGsGKT~~a~qfl~~~a~~-ge~~lyis-~eE~~~~l~~~~~~~g~d~~~~~~~g~l~i~~~~~~~~~~~~~~ 78 (187)
T cd01124 2 TLLSGG-PGTGKTTFALQFLYAGLAR-GEPGLYVT-LEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESS 78 (187)
T ss_pred EEEEEC-CCCCHHHHHHHHHHHHHHC-CCCEEEEE-ECCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCHHHH
T ss_conf 158768-9999999999999999876-99789999-50799999999998399858986458568996262002203332
Q ss_pred HHHHCCCHHHH-HHHHHHCCEEEEECCCCCCCCCCCC-----CCHHHHHHHHCCCEEEEECC
Q ss_conf 98502350788-6422328879992276555667675-----30899999747944897057
Q gi|254780487|r 77 EIDGVIIDPAT-INPPDINDSIIIEGIGGLLVPLTTE-----YLFIDLIERWQFPIILCART 132 (217)
Q Consensus 77 ~~~~~~i~~~~-~~~~~~~D~viIEGagg~~~~~~~~-----~~~~dla~~l~~~vILV~~~ 132 (217)
..+ ...+... .-...+.+.++|.+...+....... .......+.+++.+++++..
T Consensus 79 ~~~-~l~~~i~~~i~~~~~~~vVIDSi~~l~~~~~~~~~~~~~~l~~~l~~~~~t~ll~~e~ 139 (187)
T cd01124 79 LRL-ELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred HHH-HHHHHHHHHHHHHCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 367-8999999999984998999948688752566668999999999999769968999974
No 191
>PRK08116 hypothetical protein; Validated
Probab=93.05 E-value=0.68 Score=25.02 Aligned_cols=110 Identities=20% Similarity=0.233 Sum_probs=55.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 32999835898747999999999984048612013887380689999985578731144300145103478899985023
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI 82 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (217)
+.+++.|. +|+|||+++.++++.+-..|++-+-. .-+.++..+-..-... ...
T Consensus 109 ~GLll~G~-~GtGKThLa~aIa~~l~~~g~~V~~~-----~~~~ll~~lk~~~~~~---------------------~~~ 161 (262)
T PRK08116 109 VGLLLWGS-PGNGKTYLAAAIANELIEKGVPVVFV-----NVPELLNRIKSTYNSE---------------------GKE 161 (262)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEE-----EHHHHHHHHHHHHHCC---------------------CCH
T ss_conf 61899898-99989999999999999879939998-----8999999999998635---------------------610
Q ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH--H-HCCCEEEEECCCCCHHHH
Q ss_conf 50788642232887999227655566767530899999--7-479448970577650457
Q gi|254780487|r 83 IDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE--R-WQFPIILCARTSLGTINH 139 (217)
Q Consensus 83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~--~-l~~~vILV~~~~~g~i~~ 139 (217)
-...+...-..+|++||+=.|--...........++.. . -+.|+|+-++.....+..
T Consensus 162 ~~~e~l~~l~~~dLLIiDDlG~e~~t~w~~e~lf~IIn~Ry~~~kptIiTTNl~~~eL~~ 221 (262)
T PRK08116 162 DENEIIRALDNADLLILDDLGAEKDTEWVREKLYNIIDSRYRKGLPTIFTTNLSLEELKN 221 (262)
T ss_pred HHHHHHHHHHCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
T ss_conf 199999986129989983221456987899999999999997699989987999999999
No 192
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=93.04 E-value=0.48 Score=25.99 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 3299983589874799999999998
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
.+++|..-++|-|||||+-+++..+
T Consensus 365 ~Kv~iLTGGPGTGKtT~t~~i~~~~ 389 (769)
T TIGR01448 365 DKVVILTGGPGTGKTTITKAIIELY 389 (769)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9489985778886168999999999
No 193
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.01 E-value=0.14 Score=29.35 Aligned_cols=31 Identities=35% Similarity=0.397 Sum_probs=27.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 29998358987479999999999840486120
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
-|++||- ||+|||+++-.|.+.|+..|.+.+
T Consensus 9 viW~TGL-sGSGKTTiA~~l~~~L~~~g~~~~ 39 (176)
T PRK05541 9 VIWITGL-AGSGKTTIAKALYERLKLKYSNVI 39 (176)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 9997899-999899999999999997599779
No 194
>pfam10609 ParA ParA/MinD ATPase like. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.
Probab=92.98 E-value=0.52 Score=25.73 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=46.3
Q ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 879992276555667675308999997479-4489705776504579999999984799079999769
Q gi|254780487|r 95 DSIIIEGIGGLLVPLTTEYLFIDLIERWQF-PIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG 161 (217)
Q Consensus 95 D~viIEGagg~~~~~~~~~~~~dla~~l~~-~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~ 161 (217)
|++||.-.-|. +..-..+++.+.. .+|+|+....-+...+.-++.++++.++++.|+|-|.
T Consensus 2 DyLiiD~PPGT------gD~~ltl~~~~~~~~~ivVTTP~~ls~~dv~r~i~~~~~~~i~ilGiVENM 63 (81)
T pfam10609 2 DYLIIDMPPGT------GDEHLTLAQSLPVDGAVIVTTPQDVALLDVRKAIDMFKKLNVPILGIVENM 63 (81)
T ss_pred CEEEEECCCCC------CHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 89999489996------789999997488577699809859999999999999998499618999779
No 195
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.96 E-value=0.7 Score=24.94 Aligned_cols=119 Identities=12% Similarity=0.072 Sum_probs=55.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCE-ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9998358987479999999999840486120-138873806899999855787311443001451034788999850235
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPI-QSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv-~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
..|+| .+|+|||++++-++......+.|-+ -++ +...+..+.+..........-+.+.+......... ..+
T Consensus 22 t~i~G-~pG~GKStl~lq~a~~~~~~g~~v~Yidt--E~~~~er~~qi~~~~~~~~~~~i~v~~~~~~~~~~-----~~i 93 (218)
T cd01394 22 TQVYG-PPGTGKTNIAIQLAVETAGQGKKVAYIDT--EGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQG-----RAI 93 (218)
T ss_pred EEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEEEC--CCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHH-----HHH
T ss_conf 99989-99984999999999998636986999966--55676999999875366653051462678768899-----999
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCC---------------CHHHHHHHHCCCEEEEEC
Q ss_conf 078864223288799922765556676753---------------089999974794489705
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEY---------------LFIDLIERWQFPIILCAR 131 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~---------------~~~dla~~l~~~vILV~~ 131 (217)
........++.+++||...-.++.....+. ....+|+..+.+||+|..
T Consensus 94 ~~~~~~~~~~~~lvViDSi~tl~~~e~~~~~~~~~~~r~l~~~~~~L~~~Ak~~~~~vil~nq 156 (218)
T cd01394 94 QETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQ 156 (218)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 999976414772999914045545540689647999999999999999998766988999921
No 196
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=92.84 E-value=0.17 Score=28.87 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=26.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 329998358987479999999999840486120
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
+.++|+|| ||+|||.+-..|++..|.++=|.|
T Consensus 186 qH~li~GT-tGtGKS~~ir~LL~qIR~RGdrAI 217 (732)
T PRK13700 186 QNFCLHGT-VGAGKSEVIRRLANYARQRGDMVV 217 (732)
T ss_pred HEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 12677468-888899999999999997299589
No 197
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=92.76 E-value=0.2 Score=28.29 Aligned_cols=56 Identities=23% Similarity=0.359 Sum_probs=33.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 2999835898747999999999984048612013887380689999985578731144300
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKW 64 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~ 64 (217)
-|.|.|. +|+|||+|...|++.+...|+ -|..-.+....-+...+.+.+..+..||
T Consensus 10 iiVVMGV-sGsGKSTig~~LA~~l~~~fi----egDdfHp~~Ni~KM~~GiPLtD~DR~pW 65 (177)
T PRK11545 10 IYVLMGV-SGSGKSAVASAVAHQLHAAFL----DGDFLHPRCNIEKMASGEPLNDDDRKPW 65 (177)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHCCCEE----CCCCCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf 9999847-989999999999998199855----3655589999998628999986888999
No 198
>PRK05748 replicative DNA helicase; Provisional
Probab=92.70 E-value=0.76 Score=24.72 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=20.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 299983589874799999999998
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
-++|.|-.+++|||+.++-+++..
T Consensus 204 ~LiviaaRP~mGKTa~alnia~~~ 227 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNV 227 (448)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 379998479987689999999999
No 199
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=92.67 E-value=0.15 Score=29.09 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=23.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 29998358987479999999999840486
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
+|||||- .|||||++..-+++.|+..++
T Consensus 1 ki~ITG~-pGvGKTTli~kv~~~l~~~~~ 28 (168)
T pfam03266 1 RIFITGP-PGVGKTTLVKKVIELLKSEGV 28 (168)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf 9899789-998899999999999986797
No 200
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.55 E-value=0.32 Score=27.03 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=24.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 299983589874799999999998404861201
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ 36 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~ 36 (217)
-|+|||- ||+|||++-++++..++...-+-|-
T Consensus 127 LILVTGp-TGSGKSTTlAamId~iN~~~~~HIl 158 (353)
T COG2805 127 LILVTGP-TGSGKSTTLAAMIDYINKHKAKHIL 158 (353)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 6998679-9996787999999998414775168
No 201
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.55 E-value=0.36 Score=26.73 Aligned_cols=99 Identities=22% Similarity=0.274 Sum_probs=49.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
.|-|.|- +|+|||+|+.-|+.-+ ++|-|.+| ..|-..+..+..+....+-+...+| +..-..+
T Consensus 2 ~ItIsG~-pGsG~TTva~~lAe~~---gl~~vsaG------~iFR~~A~e~gmsl~ef~~~AE~~p---~iD~~iD---- 64 (179)
T COG1102 2 VITISGL-PGSGKTTVARELAEHL---GLKLVSAG------TIFREMARERGMSLEEFSRYAEEDP---EIDKEID---- 64 (179)
T ss_pred EEEECCC-CCCCCHHHHHHHHHHH---CCCEEECC------HHHHHHHHHCCCCHHHHHHHHHCCC---HHHHHHH----
T ss_conf 7996179-9997027999999982---97156212------7999999983999999999875192---1669988----
Q ss_pred HHHHHHHHHHCCEEEEECC-CCCCCCCCCCCCHHHHHHHHCCCE
Q ss_conf 0788642232887999227-655566767530899999747944
Q gi|254780487|r 84 DPATINPPDINDSIIIEGI-GGLLVPLTTEYLFIDLIERWQFPI 126 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGa-gg~~~~~~~~~~~~dla~~l~~~v 126 (217)
.......+ .+-+++||- -||..- ..+|+.-+|.||.
T Consensus 65 -~rq~e~a~-~~nvVlegrLA~Wi~k-----~~adlkI~L~Apl 101 (179)
T COG1102 65 -RRQKELAK-EGNVVLEGRLAGWIVR-----EYADLKIWLKAPL 101 (179)
T ss_pred -HHHHHHHH-CCCEEEHHHHHHHHHC-----CCCCEEEEEECCH
T ss_conf -99999987-2895870045788733-----5654688885759
No 202
>PRK09183 transposase/IS protein; Provisional
Probab=92.53 E-value=0.16 Score=28.90 Aligned_cols=132 Identities=21% Similarity=0.187 Sum_probs=61.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
-+++.|. ||+|||+++++|.+..-..|++-.-. .-..++..+. .+..++ ..
T Consensus 103 Nvil~G~-~GtGKThLA~Alg~~A~~~G~~v~f~-----~~~~L~~~L~----------------------~a~~~~-~~ 153 (258)
T PRK09183 103 NIVLLGP-SGVGKTHLAIALGYEAVRAGIKVRFT-----TAADLLLQLS----------------------TAQRQG-RY 153 (258)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEE-----EHHHHHHHHH----------------------HHHHCC-CH
T ss_conf 6799899-99868999999999999879939997-----8999999999----------------------998768-59
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH--HHCCCEEEEECCC---CC-HH-HHHHHHHHHHHHCCCEEEE
Q ss_conf 0788642232887999227655566767530899999--7479448970577---65-04-5799999999847990799
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE--RWQFPIILCARTS---LG-TI-NHSLLSLETLRNRNINIIG 156 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~--~l~~~vILV~~~~---~g-~i-~~~~l~~~~~~~~g~~i~G 156 (217)
...+.+.-..+|++||+-.|-..-.........++.. .-+..+|+-++.. .+ .+ .+..++...+.+.=-+-.-
T Consensus 154 ~~~l~r~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye~~S~IiTSn~~~~~W~~~f~~D~~la~AilDRL~H~a~~ 233 (258)
T PRK09183 154 KTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGAMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHV 233 (258)
T ss_pred HHHHHHHHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCEEE
T ss_conf 99999874346514431331546888899999999999857677899889997898565168699999999986046179
Q ss_pred EEECCCCC
Q ss_conf 99769778
Q gi|254780487|r 157 IAFIGDSM 164 (217)
Q Consensus 157 iIlN~~~~ 164 (217)
+.+++.+.
T Consensus 234 i~l~GeSy 241 (258)
T PRK09183 234 VQIKGESY 241 (258)
T ss_pred EEECCCCC
T ss_conf 97458772
No 203
>pfam08245 Mur_ligase_M Mur ligase middle domain.
Probab=92.46 E-value=0.81 Score=24.52 Aligned_cols=29 Identities=31% Similarity=0.248 Sum_probs=23.0
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 98358987479999999999840486120138
Q gi|254780487|r 7 IVGTDTSVGKTIFASALVHALNAYYWKPIQSG 38 (217)
Q Consensus 7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G 38 (217)
||||+ |||+++.-|.+.|+..|.+....|
T Consensus 1 VTGT~---GKTTt~~ml~~iL~~~g~~~~~~g 29 (188)
T pfam08245 1 ITGTN---GKTTTTELIAALLSAAGGVVGTGG 29 (188)
T ss_pred CCCCC---CHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 93758---689999999999983899899838
No 204
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=92.44 E-value=0.11 Score=29.98 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=24.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 3299983589874799999999998404
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAY 30 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~ 30 (217)
-+|+-+|+. |+|||+++--|+++|+-.
T Consensus 37 HAYLF~GpR-GtGKTS~ARIfAKaLNC~ 63 (363)
T TIGR02397 37 HAYLFSGPR-GTGKTSIARIFAKALNCQ 63 (363)
T ss_pred CEEEECCCC-CCCHHHHHHHHHHHHCCC
T ss_conf 234502859-976355899999986588
No 205
>PRK07261 topology modulation protein; Provisional
Probab=92.36 E-value=0.16 Score=28.95 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 329998358987479999999999840
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
++|.|.|+ +|+|||+.+-.|.+.+..
T Consensus 1 MrI~IiG~-sGsGKSTlAr~L~~~~~i 26 (171)
T PRK07261 1 MKIAIIGY-SGSGKSTLARFLGQHYNC 26 (171)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf 98999889-998689999999998797
No 206
>PRK09165 replicative DNA helicase; Provisional
Probab=92.34 E-value=0.59 Score=25.42 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHH
Q ss_conf 2999835898747999999999
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVH 25 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~ 25 (217)
-++|.|..+++|||..++-++.
T Consensus 206 dLiIIAARPsmGKTafaLniA~ 227 (484)
T PRK09165 206 DLIILAGRPSMGKTALATNIAF 227 (484)
T ss_pred CEEEEEECCCCCHHHHHHHHHH
T ss_conf 3799960799977899999999
No 207
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=92.34 E-value=0.14 Score=29.29 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=26.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 32999835898747999999999984048612
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKP 34 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP 34 (217)
..|-|+||+ |||++|.-|...|...+..|
T Consensus 108 ~~iaVaGTH---GKTTTTsmla~vl~~~gldP 136 (459)
T COG0773 108 TSIAVAGTH---GKTTTTSMLAWVLEAAGLDP 136 (459)
T ss_pred EEEEEECCC---CCHHHHHHHHHHHHHCCCCC
T ss_conf 169994788---75408999999998679998
No 208
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.24 E-value=0.24 Score=27.80 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=25.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 2999835898747999999999984048612
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKP 34 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP 34 (217)
.++.||- ||+|||+++.+|.+.|...|+.-
T Consensus 25 viW~TGL-SGsGKSTiA~ale~~L~~~G~~~ 54 (197)
T COG0529 25 VIWFTGL-SGSGKSTIANALEEKLFAKGYHV 54 (197)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 9996468-88878799999999999759758
No 209
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=92.09 E-value=0.12 Score=29.80 Aligned_cols=26 Identities=46% Similarity=0.593 Sum_probs=23.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 299983589874799999999998404
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAY 30 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~ 30 (217)
.|||+|| |.||||-++.-|.+.+++.
T Consensus 1 vi~i~Gp-TAvGKs~L~i~La~~lnaE 26 (307)
T TIGR00174 1 VIVIMGP-TAVGKSNLAIQLAKKLNAE 26 (307)
T ss_pred CEEEEEC-CCCCHHHHHHHHHHHCCEE
T ss_conf 9677408-8554778999988768957
No 210
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=92.05 E-value=0.91 Score=24.21 Aligned_cols=113 Identities=22% Similarity=0.212 Sum_probs=61.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE----------CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CHH
Q ss_conf 3299983589874799999999998404861201----------38873806899999855787311443001451-034
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ----------SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRT-PAS 71 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~----------~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 71 (217)
.+|=|||. +|+||++..-.|.+.++..+.| |+ ||.--=.|-..+...+..+.-+..+.+..-.. ..+
T Consensus 50 ~~iGiTG~-pG~GKStli~~l~~~~~~~g~~-v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~srg~lgg~~ 127 (325)
T PRK09435 50 LRIGITGV-PGVGKSTFIEALGMHLIEQGHK-VAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 127 (325)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 59974279-9986889999999999967985-899997899998886101038888761479984884067788867733
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf 7889998502350788642232887999227655566767530899999747944897057
Q gi|254780487|r 72 PHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART 132 (217)
Q Consensus 72 ~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~ 132 (217)
... .+.....-..++|++|||.+|- +.+-.+++..-+.-++++.+.
T Consensus 128 ~~~--------~~~~~~~~a~g~d~i~iETvGv-------GQ~e~~v~~~~d~~~~~~~p~ 173 (325)
T PRK09435 128 RKT--------RETMLLCEAAGFDVILVETVGV-------GQSETAVAGMVDFFLLLQLPG 173 (325)
T ss_pred HHH--------HHHHHHHHHCCCCEEEEEECCC-------CHHHHHHHHHCCEEEEEECCC
T ss_conf 549--------9999999977999899970677-------714889987426688883588
No 211
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=92.02 E-value=0.69 Score=24.98 Aligned_cols=107 Identities=22% Similarity=0.252 Sum_probs=61.0
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCEE---CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 983589874799999999998404861201---38873806899999855787311443001451034788999850235
Q gi|254780487|r 7 IVGTDTSVGKTIFASALVHALNAYYWKPIQ---SGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~---~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
|.|- .|.|||+.-...=.++...||.=+. +|. =+.=++.-++... ++-.|-..+++.....+
T Consensus 435 VvG~-AGtGKSt~L~aAR~AWe~~Gy~V~GAALsGK----AAegLe~~sGI~S----------RTLASle~aW~~G~d~L 499 (888)
T TIGR02768 435 VVGR-AGTGKSTMLKAAREAWEAAGYRVIGAALSGK----AAEGLEAESGIES----------RTLASLEYAWANGRDLL 499 (888)
T ss_pred EECC-CCCCHHHHHHHHHHHHHHCCCEEEEHHHHHH----HHHHHHCCCCCCH----------HHHHHHHHHHHCCCCCC
T ss_conf 9748-9987667899999999873977871545558----9887300268750----------47887999987387522
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC-CCCHHH
Q ss_conf 0788642232887999227655566767530899999747944897057-765045
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART-SLGTIN 138 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~-~~g~i~ 138 (217)
...|++||.=|| |+++-.---..+.|..-+++||||+|. ++..|.
T Consensus 500 --------~~~dvLviDEAG--MV~S~Qm~r~l~~A~~AGaKvVLvGD~~QLqaI~ 545 (888)
T TIGR02768 500 --------EDKDVLVIDEAG--MVGSRQMARVLKEAEEAGAKVVLVGDPEQLQAIE 545 (888)
T ss_pred --------CCCCEEEEECCC--CHHHHHHHHHHHHHHHCCCCEEEECCHHHHCHHH
T ss_conf --------477668985154--4146778899999987276059848857824424
No 212
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=92.01 E-value=0.18 Score=28.67 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 329998358987479999999999840
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
.-|||-|- ||+|||.||--+++.|+.
T Consensus 44 ~Ni~iYGk-TGtGKT~vt~~v~~~l~~ 69 (383)
T TIGR02928 44 SNIFIYGK-TGTGKTAVTKYVMKELEE 69 (383)
T ss_pred CCEEEECC-CCCCHHHHHHHHHHHHHH
T ss_conf 72588788-898788999999999999
No 213
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.93 E-value=0.94 Score=24.13 Aligned_cols=30 Identities=27% Similarity=0.373 Sum_probs=22.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH-HCCCCC
Q ss_conf 299983589874799999999998-404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHAL-NAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l-~~~~~K 33 (217)
.++|.|..|++|||+.++-++..+ ...++|
T Consensus 14 ~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~ 44 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKP 44 (242)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 1899996899999999999999999977995
No 214
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.89 E-value=0.26 Score=27.60 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=27.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 329998358987479999999999840486120
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
.-|++||- ||+|||+++-.|.+.|+..+++.+
T Consensus 25 ~viWlTGL-SGSGKTTlA~~L~~~L~~~~~~~~ 56 (198)
T PRK03846 25 VVLWFTGL-SGSGKSTVAGALEEALHELGVHTY 56 (198)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 69998799-999889999999999997599759
No 215
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=91.89 E-value=0.5 Score=25.84 Aligned_cols=124 Identities=13% Similarity=0.078 Sum_probs=64.6
Q ss_pred EEEEECCCCCCCHHHHHHHHH---HHHHCCC-CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 299983589874799999999---9984048-612013887380689999985578731144300145103478899985
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALV---HALNAYY-WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEID 79 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~---~~l~~~~-~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (217)
|=|--=.|+|.|||++|=-++ .|++.+| .|.=.|...-.+|.+-+.+--+.+.+...+.. ++
T Consensus 12 R~FAIISHPDAGKTT~TEK~LLyG~AIQ~AG~VK~r~S~~~A~SDWM~ME~QRGISIT~~VlQF-----~Y--------- 77 (530)
T TIGR00503 12 RTFAIISHPDAGKTTLTEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVLQF-----PY--------- 77 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEE-----CC---------
T ss_conf 5543661688874246788887425665224412200122122137887505881444127741-----45---------
Q ss_pred HCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 0235078864223288799922765556676753089999974794489705776504579999999984799079999
Q gi|254780487|r 80 GVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIA 158 (217)
Q Consensus 80 ~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiI 158 (217)
.++=+-|.+..|.- .+..++.+-..+.+ .++.|.++-.|.=..|.--.|..|-|..+|.-+|
T Consensus 78 ------------~~~l~NLLDTPGH~----DFSEDTYRTL~A~D-~~~M~IDaAKG~E~~T~KL~EV~RLR~~PI~TF~ 139 (530)
T TIGR00503 78 ------------RDCLVNLLDTPGHE----DFSEDTYRTLTAVD-NCLMVIDAAKGVETRTRKLMEVTRLRDLPILTFI 139 (530)
T ss_pred ------------CCCEEECCCCCCCC----CCCCHHHHHHHHHH-HHEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf ------------77456203685888----76404679999851-2300111125612342445420100047443352
No 216
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=91.86 E-value=0.95 Score=24.10 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=24.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 3299983589874799999999998404861
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
|.|-|+||+ ||.++++-|...|+..|+|
T Consensus 50 ~~IhVaGTN---GKGSt~~~l~~il~~~G~~ 77 (416)
T PRK10846 50 FVFTVAGTN---GKGTTCRTLESILMAAGYR 77 (416)
T ss_pred CEEEEECCC---CHHHHHHHHHHHHHHCCCC
T ss_conf 989996885---5799999999999987997
No 217
>pfam06418 CTP_synth_N CTP synthase N-terminus. This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyses the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position.
Probab=91.83 E-value=0.97 Score=24.06 Aligned_cols=182 Identities=18% Similarity=0.094 Sum_probs=83.9
Q ss_pred CCEEEEECC-CCCCCHHHHHHHHHHHHHCCCCC------------------CEECCC--------CCCCHHHHHHHHHCC
Q ss_conf 832999835-89874799999999998404861------------------201388--------738068999998557
Q gi|254780487|r 2 KLRLVIVGT-DTSVGKTIFASALVHALNAYYWK------------------PIQSGM--------YEETDSKTIHRIGRI 54 (217)
Q Consensus 2 ~~~i~I~GT-~t~vGKT~vs~~L~~~l~~~~~K------------------Pv~~G~--------~~~~D~~~~~~~~~~ 54 (217)
+|=|||+|. -|+.||-.+++.|.+.|+.+|+| |++-|. ..|-|-....+....
T Consensus 1 tkyi~vtGGV~SglGKGi~~aSig~ll~~~g~~v~~~K~DpYlNvD~Gtm~P~eHGEVfV~~DG~EtDlDlG~YERFl~~ 80 (275)
T pfam06418 1 TKYIFVTGGVVSSLGKGITAASLGRLLKSRGLKVTIQKIDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDI 80 (275)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCC
T ss_conf 93999959850256318999999999996796367874156312388877833156078737874014767523431477
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHC----C----------CHHHHHH-HHHHCCEEEEECCCCCC--CCCCCCCCHHH
Q ss_conf 873114430014510347889998502----3----------5078864-22328879992276555--66767530899
Q gi|254780487|r 55 PKSHIIPEKWKLRTPASPHLAAEIDGV----I----------IDPATIN-PPDINDSIIIEGIGGLL--VPLTTEYLFID 117 (217)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------i~~~~~~-~~~~~D~viIEGagg~~--~~~~~~~~~~d 117 (217)
..+... -.+--..++.-+..+..+. + |.....+ ..+++|++|||--|-+. ....+-.-..+
T Consensus 81 ~l~~~~--niTtGkiy~~Vi~kER~G~YLGkTVQvIPHiTdeIk~~I~~~a~~~~Di~ivEiGGTVGDIEs~pFlEAiRQ 158 (275)
T pfam06418 81 NLTKDN--NITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAAKGADVVIVEIGGTVGDIESLPFLEAIRQ 158 (275)
T ss_pred CCCCCC--CCCCHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCEEECCCCCHHHHHHHH
T ss_conf 756666--634018899999887556758971587788569999999985567897899975760100102289999999
Q ss_pred HHHHHCC-CEEEEECC---CCCHH-----HHHHHHHHHHHHCCCEEEEEEEC--CCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf 9997479-44897057---76504-----57999999998479907999976--9778005999998619989999478
Q gi|254780487|r 118 LIERWQF-PIILCART---SLGTI-----NHSLLSLETLRNRNINIIGIAFI--GDSMPKVEETIVKIGRIPHLGRLPK 185 (217)
Q Consensus 118 la~~l~~-~vILV~~~---~~g~i-----~~~~l~~~~~~~~g~~i~GiIlN--~~~~~~~~~~le~~~~ipvLG~iP~ 185 (217)
+...++. .+.+|--. ..++. --+--++..++..|+.---++.- ....+..++-|.-++++|.=.+|.-
T Consensus 159 l~~~~g~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVkeLrs~GIqPDilvcRse~~l~~~~k~KIslfcnV~~~~VI~~ 237 (275)
T pfam06418 159 FRLEVGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLDEETKEKIALFCNVPKEAVISA 237 (275)
T ss_pred HHHHHCCCCEEEEEEEECCEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEE
T ss_conf 9887287756999987324436887545673288899999648998758870678999999999987639986678984
No 218
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.82 E-value=0.97 Score=24.05 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=26.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 99983589874799999999998404861201
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQ 36 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~ 36 (217)
|=|||. ||+|||++..++-+.|+..+.+|..
T Consensus 2 IaVtGs-SGAGtsTv~r~f~~IF~re~v~a~v 32 (277)
T cd02029 2 IAVTGS-SGAGTTTVKRAFEHIFAREGIHPAV 32 (277)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 899338-8884787999999987205885289
No 219
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=91.76 E-value=0.25 Score=27.78 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=22.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
-+++.|. +|+|||+.+++|++.+-..+++
T Consensus 49 Nlll~G~-~GtGKThLA~Ai~~~~~~~g~~ 77 (178)
T pfam01695 49 NLLLLGP-PGVGKTHLACALGHQACRAGYS 77 (178)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHHHCCCE
T ss_conf 6899899-9987899999999999986985
No 220
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; InterPro: IPR014345 Members of this entry belong to the family of polysaccharide chain length determinant proteins. They are found in species that encode the PEP-CTERM/exosortase system and are predicted to act in protein sorting in a number of Gram-negative bacteria, they are also found near the epsH homologue that is the putative exosortase gene..
Probab=91.74 E-value=0.38 Score=26.59 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=21.3
Q ss_pred CHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf 059999986199899994788888887
Q gi|254780487|r 166 KVEETIVKIGRIPHLGRLPKIDPIDPD 192 (217)
Q Consensus 166 ~~~~~le~~~~ipvLG~iP~~~~~~~~ 192 (217)
+..+.|++.+|+||||+||++......
T Consensus 455 ~s~~~L~e~tG~PVLg~ip~I~~~~~~ 481 (510)
T TIGR03007 455 RSVRDLRELTGLPVLGVIPMISTPEER 481 (510)
T ss_pred CCHHHHHHHHCCCEEECCCCCCCHHHH
T ss_conf 788999988197357505765687999
No 221
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=91.73 E-value=0.25 Score=27.73 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=26.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 29998358987479999999999840486120
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
-|++||- +|+|||+++-.|.+.|+..+.+.+
T Consensus 4 viW~TGL-sGsGKTTlA~~l~~~L~~~~~~~~ 34 (157)
T pfam01583 4 TVWFTGL-SGSGKSTIANALERKLFAQGISVY 34 (157)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 9998898-999999999999999997599779
No 222
>PRK06526 transposase; Provisional
Probab=91.73 E-value=0.23 Score=27.93 Aligned_cols=131 Identities=17% Similarity=0.242 Sum_probs=58.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
-+++.|. ||+|||+++++|++..=..|++-.-. .. ..++..+. .+..++ ..
T Consensus 100 Nvil~G~-~GtGKThLA~Alg~~A~~~G~~v~f~----~~-~~L~~~L~----------------------~a~~~g-~~ 150 (254)
T PRK06526 100 NVVFLGP-PGTGKTHLAIGLGIRACQAGHRVLFA----TA-AQWVARLA----------------------AAHHAG-RL 150 (254)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEE----EH-HHHHHHHH----------------------HHHHCC-CH
T ss_conf 7899899-99868999999999999869967998----77-99999999----------------------988558-09
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH--HCCCEEEEECCCC---C-HHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 07886422328879992276555667675308999997--4794489705776---5-0457999999998479907999
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIER--WQFPIILCARTSL---G-TINHSLLSLETLRNRNINIIGI 157 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~--l~~~vILV~~~~~---g-~i~~~~l~~~~~~~~g~~i~Gi 157 (217)
.....+ -..+|++||.-.|-..-.........++... -+..+|+-++..- + .+.+..++-..+.+.=-+-.-+
T Consensus 151 ~~~~~~-l~~~dLLIiDe~g~~~~~~~~a~~lf~li~~Rye~~S~IiTSn~~~~~W~~~f~D~~la~AilDRL~H~a~~i 229 (254)
T PRK06526 151 QDELVK-LGRIPLLIVDEVGYIPFEAEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVI 229 (254)
T ss_pred HHHHHH-HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHCCCEEEE
T ss_conf 999998-5136877650213644788999999999999974588676658986688886486899999999862562899
Q ss_pred EECCCCC
Q ss_conf 9769778
Q gi|254780487|r 158 AFIGDSM 164 (217)
Q Consensus 158 IlN~~~~ 164 (217)
.+++.+.
T Consensus 230 ~~~G~Sy 236 (254)
T PRK06526 230 SLKGDSY 236 (254)
T ss_pred EECCCCC
T ss_conf 8438866
No 223
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.73 E-value=0.29 Score=27.34 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=21.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9998358987479999999999840486
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
|+|.|- +|+|||++...|++.+...++
T Consensus 2 iiv~Gv-sGsGKSTia~~La~~lg~~~i 28 (150)
T cd02021 2 IVVMGV-SGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHCCCEE
T ss_conf 899918-999999999999997199564
No 224
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=91.72 E-value=0.99 Score=23.98 Aligned_cols=52 Identities=25% Similarity=0.172 Sum_probs=36.9
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCH-HHHHHHHHCC
Q ss_conf 8329998358987479999999999840486120138873806-8999998557
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETD-SKTIHRIGRI 54 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D-~~~~~~~~~~ 54 (217)
.+=|-|-|.+ |+|||+.+-.|.+.|+..|++.+-+..|.++. +..++.....
T Consensus 3 g~fI~iEGiD-GaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~ 55 (208)
T COG0125 3 GMFIVIEGID-GAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLN 55 (208)
T ss_pred CEEEEEECCC-CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 6299997888-8988999999999999829807998689998699999999738
No 225
>PRK08082 consensus
Probab=91.64 E-value=1 Score=23.93 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=20.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 299983589874799999999998
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
-++|.|-.+++|||..++.+++..
T Consensus 204 ~LiviaaRPsmGKTa~alnia~~~ 227 (453)
T PRK08082 204 DLIIVAARPSVGKTAFALNIAQNV 227 (453)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 579998678875789999999999
No 226
>PRK08760 replicative DNA helicase; Provisional
Probab=91.60 E-value=1 Score=23.90 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=23.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 29998358987479999999999840486120
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
-++|.|..+++|||..++.+++-.-...-|||
T Consensus 230 ~LiViaaRPsmGKTalalnia~~~A~~~~~~V 261 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGV 261 (476)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 77999877887478999999999998379978
No 227
>PRK07952 DNA replication protein DnaC; Validated
Probab=91.51 E-value=1 Score=23.85 Aligned_cols=110 Identities=14% Similarity=0.176 Sum_probs=57.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
.++..|. .|+|||+.++++++.+-..|.. |-- -.=+.++..+-..-. ....-
T Consensus 98 gLlF~G~-~GTGKThLA~aIan~Li~~G~s-Vlf----~t~~dLl~~lr~t~~----------------------~~~~~ 149 (242)
T PRK07952 98 SFIFSGK-PGTGKNHLAAAICNELLLRGKS-VLI----ITVADIMSAMKDTFR----------------------NSETS 149 (242)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCE-EEE----EEHHHHHHHHHHHHH----------------------CCCCC
T ss_conf 1799789-9997899999999999987994-999----779999999999980----------------------68756
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHH-H--HCCCEEEEECCCCCHHHHHH
Q ss_conf 0788642232887999227655566767530899999-7--47944897057765045799
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIE-R--WQFPIILCARTSLGTINHSL 141 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~-~--l~~~vILV~~~~~g~i~~~~ 141 (217)
...+...-..+|++||+-.|--..........-++.. . -.-|+|+.++.....+...+
T Consensus 150 e~~~l~~l~~~dLLIiDdlG~e~~t~~~~~~lf~iId~Ry~~~kp~IitTNl~~~eL~~~l 210 (242)
T PRK07952 150 EEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLL 210 (242)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
T ss_conf 9999998631898987301466588889999999999999716988998179999999997
No 228
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=91.51 E-value=0.85 Score=24.41 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 2999835898747999999999984
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
.|..-|--||||||+++.-+++-|.
T Consensus 90 ~IILIGGasGVGkStIA~ElA~rLg 114 (299)
T COG2074 90 LIILIGGASGVGKSTIAGELARRLG 114 (299)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 5999617887772579999999729
No 229
>KOG0781 consensus
Probab=91.49 E-value=1.1 Score=23.83 Aligned_cols=168 Identities=19% Similarity=0.175 Sum_probs=80.2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCC-------CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99983589874799999999998404861-------20138873806899999855787311443001451034788999
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWK-------PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAE 77 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-------Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (217)
|-+.|-+ ||||++--+-++..|..-.|+ +|-+|.-+ .=..+..++...-.+.. ..+ ...+-. ..+.
T Consensus 381 i~fvGVN-GVGKSTNLAKIayWLlqNkfrVlIAACDTFRsGAvE-QLrtHv~rl~~l~~~~v--~lf--ekGYgk-d~a~ 453 (587)
T KOG0781 381 ISFVGVN-GVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVE-QLRTHVERLSALHGTMV--ELF--EKGYGK-DAAG 453 (587)
T ss_pred EEEEEEC-CCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHH-HHHHHHHHHHHHCCCHH--HHH--HHHCCC-CHHH
T ss_conf 9998214-766513299999999857836999862431244789-99999999987455204--888--610477-8289
Q ss_pred HHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEE-EECCCCC--HHHHHHHHHHHHHHCC--C
Q ss_conf 850235078864223288799922765556676753089999974794489-7057765--0457999999998479--9
Q gi|254780487|r 78 IDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIIL-CARTSLG--TINHSLLSLETLRNRN--I 152 (217)
Q Consensus 78 ~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vIL-V~~~~~g--~i~~~~l~~~~~~~~g--~ 152 (217)
.....| -..-.+++|++||..||-......--.....+++.-+.+-|+ |+-+-.| ++.++----.++..+. -
T Consensus 454 vak~AI---~~a~~~gfDvvLiDTAGRmhn~~~LM~~L~kl~~~n~pD~i~~VgEALVG~dsvdq~~~Fn~al~d~~~~r 530 (587)
T KOG0781 454 VAKEAI---QEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPR 530 (587)
T ss_pred HHHHHH---HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999---99986698789983544334780678999999744798659985055527558999999999874489744
Q ss_pred EEEEEEECCCC--CCCHHHHH--HHHCCCCEEEE
Q ss_conf 07999976977--80059999--98619989999
Q gi|254780487|r 153 NIIGIAFIGDS--MPKVEETI--VKIGRIPHLGR 182 (217)
Q Consensus 153 ~i~GiIlN~~~--~~~~~~~l--e~~~~ipvLG~ 182 (217)
.|-|+|+..+- .+..-.++ -..+++|++.+
T Consensus 531 ~iDgilltK~DTvdd~vG~~v~Mvy~t~~PIlFv 564 (587)
T KOG0781 531 LIDGILLTKFDTVDDKVGAAVSMVYITGKPILFV 564 (587)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHEECCCCEEEE
T ss_conf 2343788712506568887876420038976998
No 230
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=91.45 E-value=1.1 Score=23.80 Aligned_cols=179 Identities=18% Similarity=0.109 Sum_probs=84.0
Q ss_pred CEEEEECC-CCCCCHHHHHHHHHHHHHCCCCC------------------CEECCC--------CCCCHHHHHHHHHCCC
Q ss_conf 32999835-89874799999999998404861------------------201388--------7380689999985578
Q gi|254780487|r 3 LRLVIVGT-DTSVGKTIFASALVHALNAYYWK------------------PIQSGM--------YEETDSKTIHRIGRIP 55 (217)
Q Consensus 3 ~~i~I~GT-~t~vGKT~vs~~L~~~l~~~~~K------------------Pv~~G~--------~~~~D~~~~~~~~~~~ 55 (217)
|-|||||- =|+.||-.+++.|.+.|+.+|+| |+|-|. ..|-|-....+.....
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYERF~~~~ 81 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDVN 81 (533)
T ss_pred EEEEEECCEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
T ss_conf 08999188503664279999999999977974789832664003888788565742898888750256664146544787
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHC----C----------CHHHHHHHHHH-CCEEEEECCCCCCCCCCCCCCHH----
Q ss_conf 73114430014510347889998502----3----------50788642232-88799922765556676753089----
Q gi|254780487|r 56 KSHIIPEKWKLRTPASPHLAAEIDGV----I----------IDPATINPPDI-NDSIIIEGIGGLLVPLTTEYLFI---- 116 (217)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------i~~~~~~~~~~-~D~viIEGagg~~~~~~~~~~~~---- 116 (217)
.+... -.+--..++.-+..+..+. + |.....+..+. +|++|||--|.+.+ .+.....
T Consensus 82 l~~~~--niTtGkiY~~Vi~kER~GdYLG~TVQvIPHiT~eIk~~I~~~a~~~~DvvivEIGGTVGD--IEslpFlEAiR 157 (533)
T COG0504 82 LSKDN--NITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKDRIREAADSTADVVIVEIGGTVGD--IESLPFLEAIR 157 (533)
T ss_pred CCCCC--CCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCEEC--CCCCHHHHHHH
T ss_conf 66667--843338899998777447756854688787626899999982578888899981771222--23367899999
Q ss_pred HHHHHHCCC-EEEEEC--------CCCCHHHHHHHHHHHHHHCCCEEEEEEEC--CCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf 999974794-489705--------77650457999999998479907999976--9778005999998619989999478
Q gi|254780487|r 117 DLIERWQFP-IILCAR--------TSLGTINHSLLSLETLRNRNINIIGIAFI--GDSMPKVEETIVKIGRIPHLGRLPK 185 (217)
Q Consensus 117 dla~~l~~~-vILV~~--------~~~g~i~~~~l~~~~~~~~g~~i~GiIlN--~~~~~~~~~~le~~~~ipvLG~iP~ 185 (217)
++...++.. ++.+-- ++..----+--++..++.-|+.---+|.- +...+..++-|.-++++|.-.+|.-
T Consensus 158 Q~~~e~g~~n~~fiH~tlvpyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc~V~~~~Vi~~ 237 (533)
T COG0504 158 QLRLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEAVISA 237 (533)
T ss_pred HHHHHHCCCCEEEEEEECCEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHEEEC
T ss_conf 98767362568999973320361567557888427789999658996659994588799899999998638988885734
No 231
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=91.40 E-value=1.1 Score=23.77 Aligned_cols=136 Identities=17% Similarity=0.087 Sum_probs=66.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
+|.|+| +-|.|||+++--|+.-.. .. .+.....+........ -.++.+..........+..+.++
T Consensus 1 ~~vv~G-HVD~GKSTL~g~LL~~~g--~i--------~~~~~~~~~~~~~~~~----~~~~~~a~~lD~~~~ErerGiTI 65 (208)
T cd04166 1 RFLTCG-SVDDGKSTLIGRLLYDSK--SI--------FEDQLAALESKSCGTG----GEPLDLALLVDGLQAEREQGITI 65 (208)
T ss_pred CEEEEE-CCCCCHHHHHHHHHHHCC--CC--------CHHHHHHHHHHHHHCC----CCCHHHHHHCCCCHHHHHCCCCE
T ss_conf 969997-488988899999999829--96--------7899999998875416----76300034346868788269794
Q ss_pred HHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHH-HHHHCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 0788642-2328879992276555667675308999-997479-448970577650457999999998479907999976
Q gi|254780487|r 84 DPATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDL-IERWQF-PIILCARTSLGTINHSLLSLETLRNRNINIIGIAFI 160 (217)
Q Consensus 84 ~~~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dl-a~~l~~-~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN 160 (217)
+.++... ..+..+.||.-.|.- ++ ..++ .....+ -.|||+++..|...++.--...++..|++-.-+.+|
T Consensus 66 d~~~~~f~~~~~~~~iiDtPGH~------df-i~nmi~gas~aD~ailVVda~~G~~~QT~eh~~~~~~lgi~~iIv~vN 138 (208)
T cd04166 66 DVAYRYFSTPKRKFIIADTPGHE------QY-TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVN 138 (208)
T ss_pred EEEEEEEEECCCEEEEEECCCCH------HH-HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 10589998199269998789628------89-999999986377479999758887278999999999749983999998
Q ss_pred C
Q ss_conf 9
Q gi|254780487|r 161 G 161 (217)
Q Consensus 161 ~ 161 (217)
+
T Consensus 139 K 139 (208)
T cd04166 139 K 139 (208)
T ss_pred C
T ss_conf 8
No 232
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.34 E-value=0.29 Score=27.34 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=25.8
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 9998358987479999999999840486120
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
|++||- +|+|||+++-.|.+.|+..+.+.+
T Consensus 2 iW~tGL-sgsGKTTlA~~l~~~L~~~~~~~~ 31 (149)
T cd02027 2 IWLTGL-SGSGKSTIARALEEKLFQRGRPVY 31 (149)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 898799-999999999999999998699759
No 233
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.25 E-value=1.1 Score=23.68 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=66.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC-CEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 299983589874799999999998404861-2013887380689999985578731144300145103478899985023
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK-PIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI 82 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K-Pv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (217)
.++| |-++|+|||+.-+-++..+...+ | -.-+| +++-.+.-.+.-....+.. +.+.+.........+..
T Consensus 95 ~iLI-gGdPGIGKSTLLLQva~~lA~~~-~vLYVsG--EES~~QiklRA~RL~~~~~--~l~l~aEt~~e~I~~~l---- 164 (456)
T COG1066 95 VILI-GGDPGIGKSTLLLQVAARLAKRG-KVLYVSG--EESLQQIKLRADRLGLPTN--NLYLLAETNLEDIIAEL---- 164 (456)
T ss_pred EEEE-CCCCCCCHHHHHHHHHHHHHHCC-CEEEEEC--CCCHHHHHHHHHHHCCCCC--CEEEEHHCCHHHHHHHH----
T ss_conf 7997-36898779899999999987059-5799967--7678999999998289964--55774112899999999----
Q ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCCCC------------CCHHHHHHHHCCCEEEEECC-CCCHH
Q ss_conf 507886422328879992276555667675------------30899999747944897057-76504
Q gi|254780487|r 83 IDPATINPPDINDSIIIEGIGGLLVPLTTE------------YLFIDLIERWQFPIILCART-SLGTI 137 (217)
Q Consensus 83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~------------~~~~dla~~l~~~vILV~~~-~~g~i 137 (217)
-..+.|++||+..-.++++.... ....++||.-+.++++|... +.|.|
T Consensus 165 -------~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~I 225 (456)
T COG1066 165 -------EQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGAI 225 (456)
T ss_pred -------HHCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf -------8549978999654123026335799858999999999999998759739999888246632
No 234
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.13 E-value=0.82 Score=24.51 Aligned_cols=128 Identities=22% Similarity=0.330 Sum_probs=63.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCC
Q ss_conf 999835898747999999999984-04861201388738068999998557873114430014510347-8899985023
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALN-AYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASP-HLAAEIDGVI 82 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~-~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 82 (217)
+||+|- ..+|||..+-.|+.... ...| ++|+..-| ...-+++....... +..| .....| ++..
T Consensus 2 iLVtGG-~rSGKS~~AE~la~~~~~~~~Y--iAT~~~~D--~Em~~RI~~Hr~~R--~~~w--~TiE~~~~l~~------ 66 (169)
T cd00544 2 ILVTGG-ARSGKSRFAERLAAELGGPVTY--IATAEAFD--DEMAERIARHRKRR--PAHW--RTIETPRDLVS------ 66 (169)
T ss_pred EEEECC-CCCCHHHHHHHHHHHCCCCCEE--EECCCCCC--HHHHHHHHHHHHCC--CCCC--EEEECCCCHHH------
T ss_conf 899778-6636899999999845998199--97889889--89999999999668--9996--69963443999------
Q ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCCCCC------C-------HHHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHHHH
Q ss_conf 5078864223288799922765556676753------0-------89999974794489705-77650457999999998
Q gi|254780487|r 83 IDPATINPPDINDSIIIEGIGGLLVPLTTEY------L-------FIDLIERWQFPIILCAR-TSLGTINHSLLSLETLR 148 (217)
Q Consensus 83 i~~~~~~~~~~~D~viIEGagg~~~~~~~~~------~-------~~dla~~l~~~vILV~~-~~~g~i~~~~l~~~~~~ 148 (217)
.... ....|.+|||..+.+........ . ..+..+....++|+|++ .+.|.+-...++-.+.+
T Consensus 67 ---~l~~-~~~~~~vLiDclt~wl~N~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~ViVSnEVG~givp~~~~~R~f~d 142 (169)
T cd00544 67 ---ALKE-LDPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNEVGLGVVPENALGRRFRD 142 (169)
T ss_pred ---HHHH-CCCCCEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf ---9985-598885998607899999874133123667999999999999708997999965877898899889999999
Q ss_pred HCC
Q ss_conf 479
Q gi|254780487|r 149 NRN 151 (217)
Q Consensus 149 ~~g 151 (217)
..|
T Consensus 143 ~lG 145 (169)
T cd00544 143 ELG 145 (169)
T ss_pred HHH
T ss_conf 999
No 235
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=91.13 E-value=1.1 Score=23.60 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=25.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 9832999835898747999999999984048612
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKP 34 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP 34 (217)
|+ +|+|+|-+|| |--+=+++|+..|+..+++-
T Consensus 1 mk-kI~i~~GGTG-GHi~Palala~~L~~~g~ev 32 (359)
T PRK00726 1 MK-KILLAGGGTG-GHVFPALALAEELKKRGWEV 32 (359)
T ss_pred CC-EEEEEECCCH-HHHHHHHHHHHHHHHCCCEE
T ss_conf 98-8999958868-99999999999998387989
No 236
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.09 E-value=0.78 Score=24.65 Aligned_cols=29 Identities=34% Similarity=0.379 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 832999835898747999999999984048
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
...++|.|. +|+|||++...|++.+....
T Consensus 2 ~~~ill~G~-~GsGKTtl~~~la~~~~~~~ 30 (148)
T smart00382 2 GEVILIVGP-PGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHHHCCCC
T ss_conf 978999999-97029999999998726689
No 237
>PRK08181 transposase; Validated
Probab=90.98 E-value=0.31 Score=27.19 Aligned_cols=140 Identities=14% Similarity=0.219 Sum_probs=62.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
-+++.|. ||+|||+++++|++..=..|+|-.-. .- ..++..+.. +..++ ..
T Consensus 108 Nvil~Gp-~GtGKThLA~Alg~~A~~~G~~V~f~---~~--~~L~~~L~~----------------------a~~~~-~~ 158 (269)
T PRK08181 108 NLLLFGP-PGGGKSHLAAAIGLALIENGWRVLFT---RT--TDLVQKLQV----------------------ARREL-QL 158 (269)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEE---EH--HHHHHHHHH----------------------HHHCC-CH
T ss_conf 0899899-99878899999999999879939997---89--999999999----------------------77558-39
Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH--HCCCEEEEECCCC---C-HHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 07886422328879992276555667675308999997--4794489705776---5-0457999999998479907999
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIER--WQFPIILCARTSL---G-TINHSLLSLETLRNRNINIIGI 157 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~--l~~~vILV~~~~~---g-~i~~~~l~~~~~~~~g~~i~Gi 157 (217)
. ...+.-..+|++||.--|-..-.........++... -+..+|+.++..- + .+.+..++-..+.+.--+-.-+
T Consensus 159 ~-~~~~~l~~~dLLIiDe~G~~~~~~~~~~~lf~lI~~Rye~~S~IITSn~~~~~W~~~f~D~~la~AiLDRLvH~a~~i 237 (269)
T PRK08181 159 E-SAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIF 237 (269)
T ss_pred H-HHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCEEEE
T ss_conf 9-999997444601220105667998999999999999857888899889997788775386889999999870152899
Q ss_pred EECCCCCCCHHHHHHHH
Q ss_conf 97697780059999986
Q gi|254780487|r 158 AFIGDSMPKVEETIVKI 174 (217)
Q Consensus 158 IlN~~~~~~~~~~le~~ 174 (217)
.+++.++ +.++.+++.
T Consensus 238 ~l~GeSy-R~k~a~~~k 253 (269)
T PRK08181 238 EMNVESY-RRRTALERK 253 (269)
T ss_pred EECCCCC-CCHHHHHHH
T ss_conf 7558761-205678753
No 238
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=90.85 E-value=0.25 Score=27.72 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 329998358987479999999999840
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
-.|+.+||. |||||+++-.|+++|+.
T Consensus 39 ~a~lf~g~r-g~gkt~~ar~~a~~lnc 64 (663)
T PRK08770 39 HAFLFTGTR-GVGKTTIARIFAKSLNC 64 (663)
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf 047622799-88888999999998678
No 239
>KOG3347 consensus
Probab=90.80 E-value=0.21 Score=28.22 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 32999835898747999999999984048
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
.-|+|||| +|+|||+.+-.|+..+.-.|
T Consensus 8 PNILvtGT-PG~GKstl~~~lae~~~~~~ 35 (176)
T KOG3347 8 PNILVTGT-PGTGKSTLAERLAEKTGLEY 35 (176)
T ss_pred CCEEEECC-CCCCCHHHHHHHHHHHCCCE
T ss_conf 88798679-99880259999999739856
No 240
>KOG3354 consensus
Probab=90.75 E-value=0.53 Score=25.70 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=33.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWK 65 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~ 65 (217)
.|+|.|+ +|+|||++.-.|...|+..|+ -|..-.+.+..-....+.+....+.-||.
T Consensus 14 ~i~vmGv-sGsGKSTigk~L~~~l~~~F~----dgDd~Hp~~NveKM~~GipLnD~DR~pWL 70 (191)
T KOG3354 14 VIVVMGV-SGSGKSTIGKALSEELGLKFI----DGDDLHPPANVEKMTQGIPLNDDDRWPWL 70 (191)
T ss_pred EEEEEEC-CCCCHHHHHHHHHHHHCCCCC----CCCCCCCHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 5999835-887744599999998588624----55557987889988369988853211799
No 241
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.73 E-value=0.26 Score=27.66 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 329998358987479999999999840
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
-.|+.+||. |||||+++-.|+++|+.
T Consensus 39 haylf~g~r-g~gktt~ari~ak~lnc 64 (696)
T PRK06872 39 HAYLFSGTR-GVGKTSIARLFAKGLNC 64 (696)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf 047511789-88888999999998678
No 242
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=90.71 E-value=1.3 Score=23.36 Aligned_cols=176 Identities=20% Similarity=0.172 Sum_probs=83.3
Q ss_pred CEEEEECC-CCCCCHHHHHHHHHHHHHCCCCC------------------CEECC--------CCCCCHHHHHHHHHCCC
Q ss_conf 32999835-89874799999999998404861------------------20138--------87380689999985578
Q gi|254780487|r 3 LRLVIVGT-DTSVGKTIFASALVHALNAYYWK------------------PIQSG--------MYEETDSKTIHRIGRIP 55 (217)
Q Consensus 3 ~~i~I~GT-~t~vGKT~vs~~L~~~l~~~~~K------------------Pv~~G--------~~~~~D~~~~~~~~~~~ 55 (217)
|=|||+|. -|+.||-.+++.+.+.|+.+|+| |++-| ...|-|-....+.....
T Consensus 1 Kyi~VtGGV~SglGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtM~P~eHGEVfV~~DG~EtDlDlG~YERFl~~~ 80 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN 80 (255)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCC
T ss_conf 98999488201573089999999999978975889842565013899888454761778788761046664145435787
Q ss_pred CCCCC-CCC-CCC---------------CCCHHHHHHHHHHHCCCHHHHHHH--HHHCCEEEEECCCCCCCCCCCCCCHH
Q ss_conf 73114-430-014---------------510347889998502350788642--23288799922765556676753089
Q gi|254780487|r 56 KSHII-PEK-WKL---------------RTPASPHLAAEIDGVIIDPATINP--PDINDSIIIEGIGGLLVPLTTEYLFI 116 (217)
Q Consensus 56 ~~~~~-~~~-~~~---------------~~~~~~~~~~~~~~~~i~~~~~~~--~~~~D~viIEGagg~~~~~~~~~~~~ 116 (217)
.+... +.. -.+ +-..-||...+. .....+. ..++|++|||--|-+.+ .+..-..
T Consensus 81 lt~~~niTtGkiy~~VI~kER~G~YLGkTVQvIPHvTdeI-----k~~I~~~a~~~~~Di~ivEiGGTVGD--iEs~pFl 153 (255)
T cd03113 81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEI-----KERIRRVAEKSGADVVIVEIGGTVGD--IESLPFL 153 (255)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHH-----HHHHHHHHCCCCCCEEEEECCCEEEC--CCHHHHH
T ss_conf 7776775052889999877644676897068878736999-----99999860468997899976863522--4220799
Q ss_pred HHHHH----HCC-CEEEEECC---CCCHH-----HHHHHHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHCCCCEEE
Q ss_conf 99997----479-44897057---76504-----579999999984799079999769--77800599999861998999
Q gi|254780487|r 117 DLIER----WQF-PIILCART---SLGTI-----NHSLLSLETLRNRNINIIGIAFIG--DSMPKVEETIVKIGRIPHLG 181 (217)
Q Consensus 117 dla~~----l~~-~vILV~~~---~~g~i-----~~~~l~~~~~~~~g~~i~GiIlN~--~~~~~~~~~le~~~~ipvLG 181 (217)
+-++. ++. .+++|--. .+++. --+--++..++..|+.---++.-. ...+..++-|.-++++|.=.
T Consensus 154 EAiRQl~~e~g~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lr~~GI~PDiivcRse~~l~~~~k~KIa~fc~V~~~~ 233 (255)
T cd03113 154 EAIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEA 233 (255)
T ss_pred HHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHH
T ss_conf 99999986439875799987630022787643466428999999975899887998057869978999999854998788
Q ss_pred EECC
Q ss_conf 9478
Q gi|254780487|r 182 RLPK 185 (217)
Q Consensus 182 ~iP~ 185 (217)
+|.-
T Consensus 234 Vi~~ 237 (255)
T cd03113 234 VISA 237 (255)
T ss_pred EEEC
T ss_conf 7986
No 243
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=90.59 E-value=0.2 Score=28.35 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=15.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 2999835898747999999999984
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
-|+|||- |||||||+ |+.||+
T Consensus 247 IiLVTGP-TGSGKtTT---LYaaL~ 267 (495)
T TIGR02533 247 IILVTGP-TGSGKTTT---LYAALS 267 (495)
T ss_pred EEEECCC-CCCCHHHH---HHHHHH
T ss_conf 1884177-89852588---999998
No 244
>PRK06482 short chain dehydrogenase; Provisional
Probab=90.56 E-value=0.1 Score=30.14 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 98329998358987479999999999840
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
|+|..||||+++|.|+.++-..+-++.++
T Consensus 1 M~Kv~lITGaSsGiG~ala~~l~~~G~~V 29 (276)
T PRK06482 1 MTKTWFITGASSGFGRGLTERLLARGDRV 29 (276)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEE
T ss_conf 99789991586599999999999889989
No 245
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=90.53 E-value=1.3 Score=23.26 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=10.2
Q ss_pred EEEEECCCCCCCHHHHHHHHH
Q ss_conf 299983589874799999999
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALV 24 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~ 24 (217)
.++|+|+ +|+|||+.++-++
T Consensus 26 ~~LV~G~-pGsGKTtla~QfL 45 (501)
T PRK09302 26 PTLVSGT-AGTGKTLFALQFL 45 (501)
T ss_pred EEEEEEC-CCCCHHHHHHHHH
T ss_conf 7999838-9999999999999
No 246
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=90.52 E-value=0.27 Score=27.52 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 329998358987479999999999840
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
-.|+.+||. |||||+++-.|+++|+.
T Consensus 39 ~a~l~~g~r-g~gkt~~ar~~ak~lnc 64 (705)
T PRK05648 39 HAYLFTGTR-GVGKTTIARIIAKCLNC 64 (705)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf 046500789-88898999999998677
No 247
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=90.41 E-value=1.2 Score=23.47 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=62.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
+|.++| +-|.|||+.+--|+..+.. .++.....+...+.... ...+.+..........+..+..+
T Consensus 9 ~i~~~G-hVD~GKSTL~G~Ll~~~g~----------v~~~~~~~~~~~~~~~g----~~~~~~a~~~D~~~~Er~rGiTi 73 (443)
T PTZ00141 9 NLVVIG-HVDSGKSTTTGHLIYKLGG----------IDKRTIEKFEKESAEMG----KGSFKYAWVLDKLKAERERGITI 73 (443)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHCCC----------CCHHHHHHHHHHHHHHC----CCCCEEHHHHCCCHHHHHCCCEE
T ss_conf 999994-7798288889999987388----------46889999988888717----87200044530776676367107
Q ss_pred HHHHHHHH-HHCCEEEEECCCC-CCCC-CCCCCCHHHHHHHHCCCEEEEECCCCCHHH-------HHHHHHHHHHHCCCE
Q ss_conf 07886422-3288799922765-5566-767530899999747944897057765045-------799999999847990
Q gi|254780487|r 84 DPATINPP-DINDSIIIEGIGG-LLVP-LTTEYLFIDLIERWQFPIILCARTSLGTIN-------HSLLSLETLRNRNIN 153 (217)
Q Consensus 84 ~~~~~~~~-~~~D~viIEGagg-~~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~i~-------~~~l~~~~~~~~g~~ 153 (217)
+.++.... ....+.++.-.|. -|.+ ...+.+.+| -+|||+++..|... ++.--+..++..|++
T Consensus 74 dv~~~~f~t~~~~~~iiD~PGH~~fi~nmi~Gas~aD-------~ailvVdA~~G~~e~gf~~~gQTreH~~i~~~lgv~ 146 (443)
T PTZ00141 74 DIALWKFETPKYYYTVIDAPGHRDFIKNMITGTSQAD-------VALLVVPAEVGGFEGAFSKEGQTREHALLAFTLGVK 146 (443)
T ss_pred EEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHCCCC-------EEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 3479999439889999989972888999996341077-------589999867785213466678639999999973997
Q ss_pred EEEEEECC
Q ss_conf 79999769
Q gi|254780487|r 154 IIGIAFIG 161 (217)
Q Consensus 154 i~GiIlN~ 161 (217)
-.-|.+|+
T Consensus 147 ~iIVaVNK 154 (443)
T PTZ00141 147 QIIVGINK 154 (443)
T ss_pred EEEEEEEE
T ss_conf 59999996
No 248
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=90.32 E-value=1.4 Score=23.15 Aligned_cols=138 Identities=20% Similarity=0.173 Sum_probs=75.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
++.++| +-|.||++..--|+.-++.-+ +.-...++.-+....... ..+.|........+.+..+.+|
T Consensus 29 ~~v~~G-hVD~GKSTl~GrlL~~~~~v~----------~~~~~~~~~~s~~~g~~~--~~~~~a~l~D~l~~ERe~GiTI 95 (475)
T PRK05124 29 RFLTCG-SVDDGKSTLIGRLLHDTKQIY----------EDQLASLHNDSKRHGTQG--EKLDLALLVDGLQAEREQGITI 95 (475)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHCCCCC----------HHHHHHHHHHHHHHCCCC--CCEEEEEEECCCHHHHHCCCEE
T ss_conf 999990-557977888899999819978----------899999999999828877--7222444205998898669716
Q ss_pred HHHHHHHH-HHCCEEEEECCCC-CCCC-CCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 07886422-3288799922765-5566-7675308999997479448970577650457999999998479907999976
Q gi|254780487|r 84 DPATINPP-DINDSIIIEGIGG-LLVP-LTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFI 160 (217)
Q Consensus 84 ~~~~~~~~-~~~D~viIEGagg-~~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN 160 (217)
+.++.... ++..++|+.-.|. -|.+ +..+.+++| -.|||++++.|...++.--...++..|++=.-|.+|
T Consensus 96 dva~~~f~t~~r~~~i~DaPGH~~f~~NMitGas~aD-------~aiLvVdA~~G~~~QTreH~~i~~llGI~~iIVaVN 168 (475)
T PRK05124 96 DVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCD-------LAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVN 168 (475)
T ss_pred EEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCC-------EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 9567899538768999737963877888988887678-------899999898894788899999998659985999985
Q ss_pred C
Q ss_conf 9
Q gi|254780487|r 161 G 161 (217)
Q Consensus 161 ~ 161 (217)
+
T Consensus 169 K 169 (475)
T PRK05124 169 K 169 (475)
T ss_pred C
T ss_conf 0
No 249
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=90.17 E-value=0.36 Score=26.74 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8329998358987479999999999840
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
+.+|+-+|+. |+|||+++..++++++.
T Consensus 43 ~~aylf~G~r-G~GKTt~Ari~ak~lnc 69 (507)
T PRK06645 43 AGGYLLTGIR-GVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf 6347745879-97889999999999679
No 250
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.16 E-value=0.35 Score=26.83 Aligned_cols=28 Identities=36% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 83299983589874799999999998404
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAY 30 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~ 30 (217)
+.+|+.+|+. |||||+++-.|+++++..
T Consensus 45 ~~a~l~~g~r-g~gktt~ari~a~~lnc~ 72 (600)
T PRK09111 45 AQAFMLTGVR-GVGKTTTARILARALNYK 72 (600)
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHHHCCC
T ss_conf 2047645789-878999999999996698
No 251
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.12 E-value=0.32 Score=27.08 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=23.3
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 329998358987479999999999840
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
..|+.+||. |||||+++-.|+++|+.
T Consensus 39 haylf~G~r-GvGKTt~ari~Ak~lnc 64 (721)
T PRK12323 39 HAYLFTGTR-GVGKTTLSRILAKSLNC 64 (721)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf 447502799-88898999999999768
No 252
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=90.06 E-value=0.46 Score=26.07 Aligned_cols=29 Identities=34% Similarity=0.329 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 329998358987479999999999840486
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
+.+++.|. +|+|||+++++++..+...|+
T Consensus 106 ~nl~l~G~-~G~GKthLa~Ai~~~l~~~g~ 134 (254)
T COG1484 106 ENLVLLGP-PGVGKTHLAIAIGNELLKAGI 134 (254)
T ss_pred CCEEEECC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf 82899899-998799999999999998398
No 253
>PRK08017 short chain dehydrogenase; Provisional
Probab=90.04 E-value=0.82 Score=24.50 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 98329998358987479999999999840486120138
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG 38 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G 38 (217)
|+|.++|||.++|+|+-+ ++.|-..|++-+.++
T Consensus 1 M~K~vlITGassGIG~a~-----A~~la~~G~~V~~~~ 33 (256)
T PRK08017 1 MQKSVLITGCSSGIGLES-----ALELKRQGFRVLAGC 33 (256)
T ss_pred CCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEE
T ss_conf 997899965876899999-----999998799999996
No 254
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=90.03 E-value=1.4 Score=23.00 Aligned_cols=80 Identities=11% Similarity=-0.041 Sum_probs=44.1
Q ss_pred HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCC--CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC-CC-C---
Q ss_conf 328879992276555667675308999997479--4489705776504579999999984799079999769-77-8---
Q gi|254780487|r 92 DINDSIIIEGIGGLLVPLTTEYLFIDLIERWQF--PIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG-DS-M--- 164 (217)
Q Consensus 92 ~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~--~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~-~~-~--- 164 (217)
+++-+-||...|.. ....++.+.|.+ -.|+|.++..|.-.++....+.++.++++..-+ +|+ +. .
T Consensus 62 ~~~~inliDTPG~~-------DF~~e~~~aL~v~D~Av~Vida~~GVe~~T~~~w~~~~~~~iP~i~f-INKmDr~~ad~ 133 (268)
T cd04170 62 KGHKINLIDTPGYA-------DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIF-INKMDRERADF 133 (268)
T ss_pred CCEEEEEEECCCCH-------HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE-EECCCCCCCCH
T ss_conf 99799998698975-------79999999840478399994187547687999999999859998999-97878789964
Q ss_pred CCHHHHHHHHCCCCE
Q ss_conf 005999998619989
Q gi|254780487|r 165 PKVEETIVKIGRIPH 179 (217)
Q Consensus 165 ~~~~~~le~~~~ipv 179 (217)
...-+.+++..+.++
T Consensus 134 ~~~l~~i~~~lg~~~ 148 (268)
T cd04170 134 DKTLAALQEAFGRPV 148 (268)
T ss_pred HHHHHHHHHHHCCCE
T ss_conf 779999999868984
No 255
>PRK08939 primosomal protein DnaI; Reviewed
Probab=90.00 E-value=0.46 Score=26.06 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=12.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 32999835898747999999999984048
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
|.+|+.|. .|+|||++.+++++.|...+
T Consensus 158 kGlyl~G~-~G~GKTyL~~aian~La~~g 185 (306)
T PRK08939 158 KGLYLYGD-FGVGKTYLLAAIANELAKKG 185 (306)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHCC
T ss_conf 77889899-99989999999999999869
No 256
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=89.99 E-value=0.39 Score=26.55 Aligned_cols=11 Identities=45% Similarity=0.640 Sum_probs=3.4
Q ss_pred CCCHHHHHHHH
Q ss_conf 87479999999
Q gi|254780487|r 13 SVGKTIFASAL 23 (217)
Q Consensus 13 ~vGKT~vs~~L 23 (217)
|+|||+++.+|
T Consensus 402 gsGKsTiA~al 412 (568)
T PRK05537 402 GAGKSTIAKAL 412 (568)
T ss_pred CCCHHHHHHHH
T ss_conf 88776999999
No 257
>PRK07667 uridine kinase; Provisional
Probab=89.96 E-value=0.32 Score=27.05 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=21.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9998358987479999999999840486
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
|=|+|- |++|||+++..|++.|+..+.
T Consensus 17 IgIaG~-sgSGKTTla~~L~~~l~~~~~ 43 (190)
T PRK07667 17 LGIDGL-SRSGKTTFVANLKENMKQEGI 43 (190)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf 997798-978899999999999866598
No 258
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.86 E-value=0.36 Score=26.76 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 329998358987479999999999840
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
.+|+.+||. |+|||+++-.|+++|+.
T Consensus 39 haylf~G~r-G~GKtt~ari~ak~lnc 64 (643)
T PRK07994 39 HAYLFSGTR-GVGKTSIARLLAKGLNC 64 (643)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf 348745899-88888999999999679
No 259
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=89.84 E-value=0.37 Score=26.64 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8329998358987479999999999840
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
...|+.+||. |||||+++..|+++|+.
T Consensus 38 ~haylf~G~r-GvGKTt~Ari~Ak~lNC 64 (704)
T PRK08691 38 HHAYLLTGTR-GVGKTTIARILAKSLNC 64 (704)
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf 5237502789-87888999999999679
No 260
>PRK00131 aroK shikimate kinase; Reviewed
Probab=89.81 E-value=0.44 Score=26.20 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=24.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 329998358987479999999999840486
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
+.||+.|. +|+|||+|.-.|++.|...|+
T Consensus 5 ~nI~liG~-~GsGKTtvgk~LA~~L~~~fi 33 (175)
T PRK00131 5 PNIVLIGM-MGAGKSTIGRLLAKRLGYEFI 33 (175)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHCCCCC
T ss_conf 80898889-999989999999999596902
No 261
>KOG2825 consensus
Probab=89.79 E-value=0.29 Score=27.38 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=18.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 32999835898747999999999984
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
|-||| |-.-|||||++|+-|+--+.
T Consensus 20 KwifV-GGKGGVGKTTcs~sLAvqla 44 (323)
T KOG2825 20 KWIFV-GGKGGVGKTTCSCSLAVQLA 44 (323)
T ss_pred EEEEE-CCCCCCCCCCHHHHHHHHHH
T ss_conf 69997-67677676531268999986
No 262
>PRK07004 replicative DNA helicase; Provisional
Probab=89.63 E-value=1.5 Score=22.80 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 299983589874799999999998
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
-++|.|..+++|||..++-+++-.
T Consensus 214 dLiIIAARPsmGKTafAlniA~n~ 237 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYV 237 (460)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 579997368764269999999999
No 263
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=89.39 E-value=0.85 Score=24.40 Aligned_cols=126 Identities=19% Similarity=0.221 Sum_probs=77.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 89874799999999998404861201388738068999998557873114430014510347889998502350788642
Q gi|254780487|r 11 DTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDPATINP 90 (217)
Q Consensus 11 ~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 90 (217)
|-|.||++++--|+. ++|. .|...+........ ..-...+.|..........++.+.+|+.++.+.
T Consensus 15 HVD~GKST~~G~Lly----------~~G~---I~~~~~eK~~kEa~-e~GK~~F~fa~V~D~Lk~ERERGvTID~A~~KF 80 (445)
T TIGR00483 15 HVDHGKSTLVGRLLY----------KAGA---IDEQLLEKLKKEAQ-EKGKASFEFAWVMDRLKEERERGVTIDVAHKKF 80 (445)
T ss_pred EEECCCCHHHHHHHH----------HCCC---CCHHHHHHHHHHHH-HCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHC
T ss_conf 540885026677775----------4289---65899999987575-518730367654311000001562243344541
Q ss_pred H-HHCCEEEEECCCC--CCCCCCCCCCHHHHHHHHCCCEEEEECCCCC-----------HHHHHHHHHHHHHHCCCEEEE
Q ss_conf 2-3288799922765--5566767530899999747944897057765-----------045799999999847990799
Q gi|254780487|r 91 P-DINDSIIIEGIGG--LLVPLTTEYLFIDLIERWQFPIILCARTSLG-----------TINHSLLSLETLRNRNINIIG 156 (217)
Q Consensus 91 ~-~~~D~viIEGagg--~~~~~~~~~~~~dla~~l~~~vILV~~~~~g-----------~i~~~~l~~~~~~~~g~~i~G 156 (217)
. .+|.+.||+..|. .--.+..+.|.|| ..|||.+...+ +-.|.+| .+..|++-+-
T Consensus 81 eT~KY~~TivDcPGHRDFiKNMITGaSQAD-------aAvLv~~v~~~~~~ag~~~~pQTrEH~~L----a~TLGi~Qli 149 (445)
T TIGR00483 81 ETDKYEVTIVDCPGHRDFIKNMITGASQAD-------AAVLVVAVDDGEFEAGISVQPQTREHVFL----ARTLGINQLI 149 (445)
T ss_pred CCCCEEEEEEECCCCCHHHHHCCCCCCCCC-------EEEEEEECCCCCCCCCEEECCCCHHHHHH----HHHHCCEEEE
T ss_conf 788516999846987013431126675124-------27999952544102401217860577888----7750320453
Q ss_pred EEECC
Q ss_conf 99769
Q gi|254780487|r 157 IAFIG 161 (217)
Q Consensus 157 iIlN~ 161 (217)
|-+|+
T Consensus 150 VAiNK 154 (445)
T TIGR00483 150 VAINK 154 (445)
T ss_pred EEECC
T ss_conf 33102
No 264
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.37 E-value=0.43 Score=26.26 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=19.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 98329998358987479999999999
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHA 26 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~ 26 (217)
|++-|+|.|- ||+|||++.-+|...
T Consensus 1 mG~LivvsgP-SGaGK~Tli~~l~~~ 25 (184)
T PRK10078 1 MGKLIWLMGP-SGSGKDSLLAALRQR 25 (184)
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHC
T ss_conf 9709999899-869999999999844
No 265
>PRK00023 cmk cytidylate kinase; Provisional
Probab=89.36 E-value=0.36 Score=26.75 Aligned_cols=30 Identities=33% Similarity=0.346 Sum_probs=22.3
Q ss_pred CCCEEE--EECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 983299--9835898747999999999984048
Q gi|254780487|r 1 MKLRLV--IVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 1 M~~~i~--I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
|.+.+. |=|+ +++|||+++-.|++.|.-.|
T Consensus 1 m~~~iIIaIDGp-agSGKST~ak~lA~~L~~~y 32 (225)
T PRK00023 1 MMKAPVIAIDGP-AGSGKGTVAKILAKKLGFHY 32 (225)
T ss_pred CCCCCEEEEECC-CCCCHHHHHHHHHHHHCCCE
T ss_conf 998978996589-86787899999999939887
No 266
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=89.30 E-value=0.43 Score=26.30 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 3299983589874799999999998404
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAY 30 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~ 30 (217)
+.+++.|. +|+|||+++..+++.+...
T Consensus 20 ~~ill~Gp-pGtGKT~la~~ia~~~~~~ 46 (151)
T cd00009 20 KNLLLYGP-PGTGKTTLARAIANELFRP 46 (151)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHCCC
T ss_conf 80899899-9988659999999971213
No 267
>PRK05636 replicative DNA helicase; Provisional
Probab=89.29 E-value=1.6 Score=22.65 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 299983589874799999999998
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
.++|.|..+++|||+.++.+++..
T Consensus 268 ~LiIiAARPsmGKTalAlnia~n~ 291 (507)
T PRK05636 268 QMIIVAARPGVGKSTIALDFMRSA 291 (507)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 679997378786689999999999
No 268
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=89.26 E-value=1.6 Score=22.63 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=36.5
Q ss_pred HHCCEEEEECCCCCCCCCCCCCCHHHHHHH---HCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 328879992276555667675308999997---4794489705776504579999999984799079999769
Q gi|254780487|r 92 DINDSIIIEGIGGLLVPLTTEYLFIDLIER---WQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG 161 (217)
Q Consensus 92 ~~~D~viIEGagg~~~~~~~~~~~~dla~~---l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~ 161 (217)
+++-+-+|...|.. ....+..+. .+ -+|+|+++..|--.++...+++++.++++.. +.+|+
T Consensus 62 ~~~~~n~iDtPG~~-------dF~~e~~~al~~~D-~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~i-ifiNK 125 (237)
T cd04168 62 EDTKVNLIDTPGHM-------DFIAEVERSLSVLD-GAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNK 125 (237)
T ss_pred CCEEEEEEECCCCH-------HHHHHHHHHHHHCC-CEEEEEECCCCCCCCHHHHHHHHHHCCCCEE-EEEEC
T ss_conf 99879998898846-------56668988976348-1699996588822344999999998599859-98624
No 269
>PRK07524 hypothetical protein; Provisional
Probab=89.09 E-value=1.6 Score=22.65 Aligned_cols=60 Identities=13% Similarity=0.272 Sum_probs=34.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf 794489705776504579999999984799079999769778005999998619989999478
Q gi|254780487|r 123 QFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPKVEETIVKIGRIPHLGRLPK 185 (217)
Q Consensus 123 ~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~~~~le~~~~ipvLG~iP~ 185 (217)
+.+||++++. |+...+...+..+.+.++++.-||+|+......+...+.. +.+-.|+-|.
T Consensus 425 ~r~vi~i~GD--Gsf~m~~~eL~Ta~r~~lpi~iiV~NN~gyg~i~~~~~~~-~~~~~~~~~~ 484 (534)
T PRK07524 425 ERPVVCLVGD--GGLQFTLPELASAVEADLPLVVLLWNNQGYGEIRRYMVAR-DIEPVGVDPY 484 (534)
T ss_pred CCCEEEEECC--HHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHH-CCCCCCCCCC
T ss_conf 9978999872--6875419999999997859189999798325999999862-7886557789
No 270
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=89.05 E-value=0.46 Score=26.09 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 329998358987479999999999840
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
..|+.+||. |||||+++-.|+++|+.
T Consensus 39 haylf~G~r-GvGKTt~aRi~Ak~lnC 64 (816)
T PRK07003 39 HAYLFTGTR-GVGKTTLSRIFAKALNC 64 (816)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf 147511789-88888999999998678
No 271
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=89.03 E-value=0.39 Score=26.55 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=15.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999835898747999999999984
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
|+|.| +||+||||.+-+|+.-..
T Consensus 142 Ilv~G-GTGSGKTTLaNAlla~I~ 164 (315)
T TIGR02782 142 ILVVG-GTGSGKTTLANALLAEIA 164 (315)
T ss_pred EEEEC-CCCCCHHHHHHHHHHHHH
T ss_conf 89981-458857999999999885
No 272
>PRK06762 hypothetical protein; Provisional
Probab=89.02 E-value=0.54 Score=25.67 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 9832999835898747999999999984
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
|+|-|.|=|- |++|||+++.+|=+.+-
T Consensus 1 mt~LIiiRGN-SgSGKtT~Ak~L~~~~G 27 (166)
T PRK06762 1 MTTLIIIRGN-SGSGKTTIAKQLQERLG 27 (166)
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHHC
T ss_conf 9528999788-88887899999999868
No 273
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.87 E-value=0.47 Score=26.04 Aligned_cols=31 Identities=35% Similarity=0.490 Sum_probs=23.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHC-------CCCCCEE
Q ss_conf 9998358987479999999999840-------4861201
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNA-------YYWKPIQ 36 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~-------~~~KPv~ 36 (217)
|=|+|. |++|||+++-.|.+.+.. .||||..
T Consensus 2 IgIaG~-S~SGKTTla~~L~~~l~~~~iI~qDdyYk~~~ 39 (187)
T cd02024 2 VGISGV-TNSGKTTLAKLLQRILPNCCVIHQDDFFKPED 39 (187)
T ss_pred EEEECC-CCCCHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 899688-88759999999999879988971544678843
No 274
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=88.83 E-value=0.36 Score=26.74 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 998358987479999999999840
Q gi|254780487|r 6 VIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 6 ~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
||+|. |||||+|..+++.|.+-.
T Consensus 153 LiCG~-TGSGKSTl~AaiY~~~l~ 175 (374)
T TIGR02525 153 LICGE-TGSGKSTLAAAIYRHCLE 175 (374)
T ss_pred EECCC-CCCCHHHHHHHHHHHHCC
T ss_conf 22177-897289999999998507
No 275
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.80 E-value=0.37 Score=26.66 Aligned_cols=19 Identities=47% Similarity=0.742 Sum_probs=6.9
Q ss_pred EEEECCCCCCCHHHHHHHHH
Q ss_conf 99983589874799999999
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALV 24 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~ 24 (217)
|+|+|. ||+|||+..-+|+
T Consensus 163 ilI~G~-TgSGKTTll~aL~ 181 (332)
T PRK13900 163 IIISGG-TSTGKTTFTNAAL 181 (332)
T ss_pred EEEECC-CCCCHHHHHHHHH
T ss_conf 999888-8988999999998
No 276
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=88.76 E-value=0.44 Score=26.20 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 83299983589874799999999998
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
+|-|.|+|- ||+||||..=+|++-+
T Consensus 158 ~knIii~GG-TgSGKTTf~kal~~~I 182 (328)
T TIGR02788 158 RKNIIISGG-TGSGKTTFLKALVKEI 182 (328)
T ss_pred CCEEEEEEC-CCCHHHHHHHHHHHCC
T ss_conf 891999906-8971899999997327
No 277
>PRK05993 short chain dehydrogenase; Provisional
Probab=88.74 E-value=0.82 Score=24.51 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 98329998358987479999999999840486120138
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG 38 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G 38 (217)
|.|.++|||.++|+|+- +++.|-..|++-+.++
T Consensus 3 m~K~vlITGassGIG~a-----lA~~la~~G~~V~~~~ 35 (277)
T PRK05993 3 MKRSILITGCSSGIGAY-----CAHALQKRGWRVFATC 35 (277)
T ss_pred CCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEE
T ss_conf 98689992568699999-----9999998799999997
No 278
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=88.71 E-value=0.52 Score=25.73 Aligned_cols=42 Identities=31% Similarity=0.526 Sum_probs=31.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHH
Q ss_conf 9832999835898747999999999984048612013887380689999985
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIG 52 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~ 52 (217)
|++.||..|- .|+|||+|.-.|++.|...++ |.|..+-+...
T Consensus 1 ~~~~IvLiG~-mGaGKSTIGr~LAk~L~~~F~---------D~D~~Ie~~~g 42 (172)
T COG0703 1 RNMNIVLIGF-MGAGKSTIGRALAKALNLPFI---------DTDQEIEKRTG 42 (172)
T ss_pred CCCCEEEECC-CCCCHHHHHHHHHHHCCCCCC---------CCHHHHHHHHC
T ss_conf 9961899717-999776899999998199802---------24699999979
No 279
>PRK12735 elongation factor Tu; Reviewed
Probab=88.63 E-value=1.8 Score=22.36 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=60.9
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 99835898747999999999984048612013887380689999985578731144300145103478899985023507
Q gi|254780487|r 6 VIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDP 85 (217)
Q Consensus 6 ~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 85 (217)
+++--|-|.|||+.+-.|...+...+-+-.. ...+ ...+...+..+.+++.
T Consensus 15 i~~~GHVD~GKSTL~g~Lt~~~~~~~~~~~~----~~~~-------------------------~D~~~eEr~rGiTid~ 65 (396)
T PRK12735 15 VGTIGHVDHGKTTLTAAITTVLAKKGGGEAK----AYDQ-------------------------IDNAPEEKARGITINT 65 (396)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCC----CHHH-------------------------HCCCHHHHCCCEEEEE
T ss_conf 9999426885898999986145452464312----2122-------------------------1166567437737985
Q ss_pred HHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 88642-23288799922765556676753089999974794-489705776504579999999984799079999769
Q gi|254780487|r 86 ATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFP-IILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG 161 (217)
Q Consensus 86 ~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~-vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~ 161 (217)
.+... ..+..+.+|.-+|. .++.--=++...+++ ++||+++..|...++.--+..++..|++..-|.+|+
T Consensus 66 ~~~~fet~~~~~~~iD~PGH------e~fiknMI~Ga~~aD~alLVV~A~~G~~~QTrEHl~l~~~lgv~~~iV~vnK 137 (396)
T PRK12735 66 SHVEYETANRHYAHVDCPGH------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred EEEEEECCCEEEEEEECCCH------HHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 69999739805999836866------8877666410042567999998687875316999999998399858999987
No 280
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.49 E-value=0.6 Score=25.37 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 832999835898747999999999984048
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
.+.|-||||+ |||++|..+.+.|+..+
T Consensus 89 ~~~I~ITGTN---GKsTtt~li~~iL~~~g 115 (401)
T PRK03815 89 PFSIWISGTN---GKTTTTQMLTHLLEDFG 115 (401)
T ss_pred CCCEEEECCC---CHHHHHHHHHHHHHHCC
T ss_conf 8748998477---77899999999998669
No 281
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=88.38 E-value=1.9 Score=22.26 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=34.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHC
Q ss_conf 29998358987479999999999840486120138873806899999855
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGR 53 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~ 53 (217)
-++|.|..++.|||..++-++.-+-..+-|||.--..+-+--+...+...
T Consensus 197 dLiilAaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~eql~~R~Ls 246 (435)
T COG0305 197 DLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEEQLVMRLLS 246 (435)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHC
T ss_conf 77997168999758999999999998558975999826799999997534
No 282
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=88.33 E-value=0.51 Score=25.82 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 329998358987479999999999840
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
-.|+.+||. |||||+++-.|+++|+.
T Consensus 39 haylf~G~r-GvGKTt~ARi~Ak~lNC 64 (717)
T PRK08853 39 HAYLFSGTR-GVGKTTIGRLFAKGLNC 64 (717)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf 057610889-88898999999998678
No 283
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.25 E-value=0.51 Score=25.80 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 832999835898747999999999984
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
.+.|+|+|. ||+|||+...+|++.+.
T Consensus 25 ~~nIlIsG~-tGSGKTTll~al~~~i~ 50 (186)
T cd01130 25 RKNILISGG-TGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEECC-CCCCHHHHHHHHHHHCC
T ss_conf 998999899-99989999999996133
No 284
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=88.20 E-value=1.9 Score=22.19 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=52.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHH-HHH----HCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCC-HHH-HH
Q ss_conf 3299983589874799999999-998----4048612013887380689999985578731144-30014510-347-88
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALV-HAL----NAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIP-EKWKLRTP-ASP-HL 74 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~-~~l----~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~~ 74 (217)
|.++..=|+.|=|||+.++|++ |++ |+..++ |-.|......-..++ .. ........ .+..+..+ ..+ ..
T Consensus 21 kGlI~VYTGdGKGKTTAAlGlalRA~G~G~rV~ivQ-FlKg~~~~ge~~~~~-~~-~~~~~~~~g~~~~~~~~~~~e~~~ 97 (178)
T PRK07414 21 EGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQ-FLKGGIQQGPDQPIQ-LG-QNLDWVRCDLPRCLDTPHLDESEN 97 (178)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE-EEECCCCCCHHHHHH-HC-CCCEEEECCCCCCCCCCCCCHHHH
T ss_conf 417999957999808999999999953998799999-755897301689997-26-896899747775466888889999
Q ss_pred HHHHHHCCCHHHHHH-HHHHCCEEEEECCCCC-CCCCCCCCCHHHHHHH--HCCCEEEEECCC
Q ss_conf 999850235078864-2232887999227655-5667675308999997--479448970577
Q gi|254780487|r 75 AAEIDGVIIDPATIN-PPDINDSIIIEGIGGL-LVPLTTEYLFIDLIER--WQFPIILCARTS 133 (217)
Q Consensus 75 ~~~~~~~~i~~~~~~-~~~~~D~viIEGagg~-~~~~~~~~~~~dla~~--l~~~vILV~~~~ 133 (217)
.+..+... .+... .+..+|++|.+-.... .-+........++.+. -+..|||-++.-
T Consensus 98 ~a~~~~~~--~a~~~l~~g~~DlvVLDEi~~Al~~gll~~eeVi~~L~~rP~~~evVLTGR~a 158 (178)
T PRK07414 98 KALQELWQ--YTQQVVDEGKYELVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM 158 (178)
T ss_pred HHHHHHHH--HHHHHHHCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 99999999--99999868898889970368998769925999999998189998899969999
No 285
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=88.18 E-value=0.59 Score=25.40 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=9.8
Q ss_pred EEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99983589874799999999998
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
++|+|. ||+|||+..-+|+..+
T Consensus 142 ilIsG~-TGSGKTT~l~all~~i 163 (283)
T pfam00437 142 ILVSGG-TGSGKTTLLYALLNEI 163 (283)
T ss_pred EEEECC-CCCCHHHHHHHHHHHC
T ss_conf 999889-9998899999999840
No 286
>PRK06921 hypothetical protein; Provisional
Probab=88.14 E-value=0.67 Score=25.04 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=21.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH-HCCCC
Q ss_conf 299983589874799999999998-40486
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHAL-NAYYW 32 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l-~~~~~ 32 (217)
.++..|. +|+|||+.+.+++..| +..|.
T Consensus 118 ~l~f~G~-~G~GKThLa~aIa~~Ll~~~~~ 146 (265)
T PRK06921 118 SIALLGQ-PGSGKTHLLTAAANELMRKKGV 146 (265)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHHHHCCC
T ss_conf 2799728-9898899999999999996297
No 287
>PRK13949 shikimate kinase; Provisional
Probab=88.13 E-value=0.59 Score=25.42 Aligned_cols=30 Identities=33% Similarity=0.537 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 98329998358987479999999999840486
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
|+ +|+..|- +|+|||++.-.|++.+...++
T Consensus 1 Mk-~I~LiG~-mGsGKstiGk~La~~l~~~fi 30 (169)
T PRK13949 1 MA-RIFLVGY-MGAGKTTLGKALARELGLSFI 30 (169)
T ss_pred CC-CEEEECC-CCCCHHHHHHHHHHHHCCCEE
T ss_conf 98-3899799-999889999999999599979
No 288
>PRK13947 shikimate kinase; Provisional
Probab=88.06 E-value=0.59 Score=25.40 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 98329998358987479999999999840486
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
|+ .||..|- +|+|||++.-.|++.+...++
T Consensus 1 mk-nI~LiG~-mGsGKTtiGk~La~~L~~~fi 30 (171)
T PRK13947 1 MK-NIVLIGF-MGTGKTTVGKKVATTLSFGFI 30 (171)
T ss_pred CC-CEEEECC-CCCCHHHHHHHHHHHHCCCEE
T ss_conf 98-5899799-999889999999999796989
No 289
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=87.98 E-value=1.8 Score=22.41 Aligned_cols=129 Identities=19% Similarity=0.193 Sum_probs=54.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHHH-HHH----HCCCCCCEECCCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCCHHHH-H
Q ss_conf 83299983589874799999999-998----404861201388738068999998557873-1144300145103478-8
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALV-HAL----NAYYWKPIQSGMYEETDSKTIHRIGRIPKS-HIIPEKWKLRTPASPH-L 74 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~-~~l----~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~ 74 (217)
.+.+.+.=|+.|=|||+-++|++ |++ |+..++=++ |.-....-..+... ..... .-....+.+.+..... .
T Consensus 27 ~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiK-g~~~~GE~~~~~~~-~~~v~~~~~~~g~tw~~~~~~~d~ 104 (198)
T COG2109 27 EKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIK-GGWKYGEEAALEKF-GLGVEFHGMGEGFTWETQDREADI 104 (198)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEE-CCCCHHHHHHHHHH-CCCEEEEECCCCEECCCCCCHHHH
T ss_conf 1676999826998834799999999843897799999962-68621178999861-553259965884237776717789
Q ss_pred HHHHHHCCCHHHHH-HHHHHCCEEEEECCCCCCCCCCCC-CCHHHHHHHHC-----CCEEEEECCCCCHH
Q ss_conf 99985023507886-422328879992276555667675-30899999747-----94489705776504
Q gi|254780487|r 75 AAEIDGVIIDPATI-NPPDINDSIIIEGIGGLLVPLTTE-YLFIDLIERWQ-----FPIILCARTSLGTI 137 (217)
Q Consensus 75 ~~~~~~~~i~~~~~-~~~~~~D~viIEGagg~~~~~~~~-~~~~dla~~l~-----~~vILV~~~~~g~i 137 (217)
++....... +.. ..+..+|++|..-.-- .+..+ .+..++...|+ ..||+-++.-...+
T Consensus 105 ~aa~~~w~~--a~~~l~~~~ydlviLDEl~~---al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~l 169 (198)
T COG2109 105 AAAKAGWEH--AKEALADGKYDLVILDELNY---ALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPEL 169 (198)
T ss_pred HHHHHHHHH--HHHHHHCCCCCEEEEEHHHH---HHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHH
T ss_conf 999999999--99997388878899721268---887388879999999955998767999799999899
No 290
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=87.96 E-value=2 Score=22.09 Aligned_cols=161 Identities=14% Similarity=0.103 Sum_probs=83.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHH-HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 299983589874799999999998404861201388738068-9999985578731144300145103478899985023
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDS-KTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI 82 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (217)
+|.++| +-|.||++..--|+.-.+.-+ .|- ..+...+....... ..+.|..-.....+.+..+.+
T Consensus 9 ~~~~~G-~VD~GKSTliGrlL~dt~~i~-----------~d~~~~~~~~s~~~g~~~--~~~~~a~l~D~l~~EreqGiT 74 (613)
T PRK05506 9 RFITCG-SVDDGKSTLIGRLLYDSKMIF-----------EDQLAALERDSKKVGTQG--DEIDLALLVDGLAAEREQGIT 74 (613)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHHCCCC--CCEEEEEECCCCHHHHHCCCE
T ss_conf 899993-667978889889999819967-----------899999999999818988--860354421488889855971
Q ss_pred CHHHHHHHH-HHCCEEEEECCCCC-CCC-CCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 507886422-32887999227655-566-767530899999747944897057765045799999999847990799997
Q gi|254780487|r 83 IDPATINPP-DINDSIIIEGIGGL-LVP-LTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAF 159 (217)
Q Consensus 83 i~~~~~~~~-~~~D~viIEGagg~-~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIl 159 (217)
|+.++.... .+..++|+...|.- |.. +..+-+++| -.|||.+++.|...++---...+...|++=.-+.+
T Consensus 75 IDva~~~F~t~~r~~~i~DaPGH~~y~rNMitgAs~ad-------~AilliDa~~G~~~QTrrH~~i~~llGI~~iivaV 147 (613)
T PRK05506 75 IDVAYRYFSTPKRKFIVADTPGHEQYTRNMATGASTAD-------LAIILVDARKGVLTQTRRHSFIASLLGIRHIVLAV 147 (613)
T ss_pred EEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCC-------EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 68567788438705999428967989989998786538-------79999988879515518999999872987599998
Q ss_pred CC-----CCCCCHHHH---HH---HHCCCCEEEEECC
Q ss_conf 69-----778005999---99---8619989999478
Q gi|254780487|r 160 IG-----DSMPKVEET---IV---KIGRIPHLGRLPK 185 (217)
Q Consensus 160 N~-----~~~~~~~~~---le---~~~~ipvLG~iP~ 185 (217)
|+ +......+. +. +..+++-.-.||-
T Consensus 148 NKMDlV~y~~~~f~~I~~~~~~~~~~l~~~~~~~IPI 184 (613)
T PRK05506 148 NKMDLVDYDQEVFDRIVADYLAFAAKLGLTDVTFIPI 184 (613)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 5201247819999999999999996579988759967
No 291
>KOG0635 consensus
Probab=87.95 E-value=0.55 Score=25.60 Aligned_cols=27 Identities=33% Similarity=0.342 Sum_probs=23.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 2999835898747999999999984048
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
.|+|||- +++||++++++|-++|-.++
T Consensus 33 viWiTGL-SgSGKStlACaL~q~L~qrg 59 (207)
T KOG0635 33 VIWITGL-SGSGKSTLACALSQALLQRG 59 (207)
T ss_pred EEEEECC-CCCCCHHHHHHHHHHHHHCC
T ss_conf 8997425-77880259999999998658
No 292
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=87.92 E-value=0.65 Score=25.13 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=29.8
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCC
Q ss_conf 83299983589874799999999998404861201388738068999998557
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRI 54 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~ 54 (217)
+|.||..|- +|+|||+|.-.|++.+...++ |.|... ....+.
T Consensus 4 kknI~LiG~-mGsGKstvgk~LA~~l~~~fi---------D~D~~I-e~~~g~ 45 (172)
T PRK05057 4 KRNIFLVGP-MGAGKSTIGRQLAQQLNMEFY---------DSDQEI-EKRTGA 45 (172)
T ss_pred CCCEEEECC-CCCCHHHHHHHHHHHHCCCEE---------ECHHHH-HHHHCC
T ss_conf 882898899-999889999999999699968---------780999-999798
No 293
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=87.91 E-value=2 Score=22.07 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=15.0
Q ss_pred EEEECCCCCCCHHHHHHHHHH
Q ss_conf 999835898747999999999
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVH 25 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~ 25 (217)
|-|. .|.|+|||+.|=.|+.
T Consensus 13 iaIi-~H~dAGKTTLtE~lL~ 32 (526)
T PRK00741 13 FAII-SHPDAGKTTLTEKLLL 32 (526)
T ss_pred EEEE-CCCCCCHHHHHHHHHH
T ss_conf 9999-3789898999999997
No 294
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=87.89 E-value=1.6 Score=22.69 Aligned_cols=132 Identities=15% Similarity=0.058 Sum_probs=57.6
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCE--ECCCCCC-CHHHHHHHHHCCC-CCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 98358987479999999999840486120--1388738-0689999985578-731144300145103478899985023
Q gi|254780487|r 7 IVGTDTSVGKTIFASALVHALNAYYWKPI--QSGMYEE-TDSKTIHRIGRIP-KSHIIPEKWKLRTPASPHLAAEIDGVI 82 (217)
Q Consensus 7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv--~~G~~~~-~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (217)
|-|- .++|||.+|+-++-.--..|-|-| -| +. =-...+++++... .++........... ++...+.+ .-
T Consensus 17 iYGp-~G~GKTn~c~~~a~~a~~~Gk~v~YiDT---EGGLS~ER~~q~~~~~~~D~e~~~~~~iv~~--~~~f~eQ~-~a 89 (223)
T TIGR02237 17 IYGP-PGSGKTNICLILAVNAARQGKKVVYIDT---EGGLSPERFKQIAEDRALDPERVLSNVIVFE--VFDFDEQE-VA 89 (223)
T ss_pred EECC-CCCCHHHHHHHHHHHHHHCCCCEEEEEC---CCCCHHHHHHHHHHCCCCCHHHHHCCEEEEC--CCCHHHHH-HH
T ss_conf 8758-9986789999999999861895899962---8983289999986305889888841535523--53567899-99
Q ss_pred CHHHHHHHH---HHCCEEEEECCCCCCCCCCCCCC--HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 507886422---32887999227655566767530--8999997479448970577650457999999998479907999
Q gi|254780487|r 83 IDPATINPP---DINDSIIIEGIGGLLVPLTTEYL--FIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGI 157 (217)
Q Consensus 83 i~~~~~~~~---~~~D~viIEGagg~~~~~~~~~~--~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~Gi 157 (217)
|.....-+. +..+++||...-++|---..+.. +.++.+.|+ ++.-+-...++++ +|+-|
T Consensus 90 i~~~~~~~~~~G~~~~LvVvDs~t~~YRle~~~d~nk~~~~~~~l~--------------~Ql~~Ll~lArk~--~~AVv 153 (223)
T TIGR02237 90 IQKTSKLIDRDGDKADLVVVDSFTALYRLERSDDRNKQISLNRELA--------------RQLTLLLSLARKK--DLAVV 153 (223)
T ss_pred HHHHHHHHHCCCCEEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHH--------------HHHHHHHHHHHHC--CCCEE
T ss_conf 9999999860688331488815334542025786025679999999--------------9999999998764--99789
Q ss_pred EECC
Q ss_conf 9769
Q gi|254780487|r 158 AFIG 161 (217)
Q Consensus 158 IlN~ 161 (217)
|-|+
T Consensus 154 iTNQ 157 (223)
T TIGR02237 154 ITNQ 157 (223)
T ss_pred EEEE
T ss_conf 9711
No 295
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=87.83 E-value=2 Score=22.04 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=14.9
Q ss_pred EECCCCCCCHHHHHHHHHHHH
Q ss_conf 983589874799999999998
Q gi|254780487|r 7 IVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 7 I~GT~t~vGKT~vs~~L~~~l 27 (217)
|.| |.|+|||+.+=+|+..-
T Consensus 4 i~g-H~gaGKTtL~EalL~~a 23 (270)
T cd01886 4 IIA-HIDAGKTTTTERILYYT 23 (270)
T ss_pred EEE-CCCCCHHHHHHHHHHHC
T ss_conf 996-89999889999999866
No 296
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=87.77 E-value=1.9 Score=22.19 Aligned_cols=50 Identities=28% Similarity=0.311 Sum_probs=29.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCC
Q ss_conf 299983589874799999999998404861201388738068999998557
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRI 54 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~ 54 (217)
.|+.+|. ||+|||.++-.|++.+...-.+-+........+...+....+.
T Consensus 5 ~~l~~GP-sGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~ 54 (168)
T pfam07724 5 SFLFLGP-TGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGA 54 (168)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCC
T ss_conf 9998898-9989999999999996798534488557565425699987058
No 297
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=87.70 E-value=2.1 Score=21.99 Aligned_cols=110 Identities=19% Similarity=0.147 Sum_probs=50.9
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE--CCC-CCCCHHHHHHHHHCCCC--CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99983589874799999999998404861201--388-73806899999855787--31144300145103478899985
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQ--SGM-YEETDSKTIHRIGRIPK--SHIIPEKWKLRTPASPHLAAEID 79 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~--~G~-~~~~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (217)
+.|+|= -|+|||+.-..|++.. ..+.|..- .-. ..+.|...++....... +.-++|+. .........
T Consensus 3 ~iitGF-LGsGKTTll~~ll~~~-~~~~~~avI~Ne~g~~~iD~~ll~~~~~~v~el~~GciCc~-~~~d~~~~l----- 74 (174)
T pfam02492 3 TVLTGF-LGSGKTTLLEHLLRDN-REGLKIAVIVNDFGETGIDAELLRETGAEIVELNNGCICCT-IREDLSMVL----- 74 (174)
T ss_pred EEEECC-CCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCC-CCHHHHHHH-----
T ss_conf 999348-8788999999999844-48984799993365302079998706961899748866454-333699999-----
Q ss_pred HCCCHHHHHH-HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECC
Q ss_conf 0235078864-223288799922765556676753089999974794-4897057
Q gi|254780487|r 80 GVIIDPATIN-PPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFP-IILCART 132 (217)
Q Consensus 80 ~~~i~~~~~~-~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~-vILV~~~ 132 (217)
.++.. ...+.|+++||.+| +..|.. ..++...+... +|-|+++
T Consensus 75 -----~~l~~~~~~~~d~iiIE~sG-la~p~~----i~~~~~~~~~~~~i~vvDa 119 (174)
T pfam02492 75 -----EALLELKLPRLDLLFIETTG-LACPAP----VLDLRSDLGLDGVVTVVDV 119 (174)
T ss_pred -----HHHHHCCCCCCCEEEEECCC-CCCHHH----HHHHHHCCCCCEEEEEEEC
T ss_conf -----99985578999999995876-677077----7765320265459999972
No 298
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=87.68 E-value=2.1 Score=21.98 Aligned_cols=130 Identities=16% Similarity=0.172 Sum_probs=58.2
Q ss_pred CCEEEEECCCCCCCHHHHHHHHH-HHH----HCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH-HH
Q ss_conf 83299983589874799999999-998----4048612013887380689999985578731144300145103478-89
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALV-HAL----NAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPH-LA 75 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~-~~l----~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 75 (217)
.+.+...=|+.|=|||+.++|++ |++ |+...+ |-.|.........++......-...- ..+.+.....+. ..
T Consensus 2 ~~G~i~iytG~GKGKTTAAlGlalRA~G~G~rV~ivQ-FlKg~~~~GE~~~l~~l~~v~~~~~g-~gf~~~~~~~~~d~~ 79 (172)
T pfam02572 2 EKGLLIVYTGNGKGKSTAAFGMALRALGHGMRVGVVQ-FIKGKWETGEEAALEALPEVEWHVMG-EGFTWETQDRERDIA 79 (172)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE-EECCCCCCCHHHHHHHCCCCEEEECC-CCCCCCCCCCHHHHH
T ss_conf 7637999957999718899999999825998899999-95388776389999878996899788-998587888788999
Q ss_pred HHHHHCCCHHHHHH-HHHHCCEEEEECCCCCCC-CCCCCCCHHHHHHH--HCCCEEEEECCCCC
Q ss_conf 99850235078864-223288799922765556-67675308999997--47944897057765
Q gi|254780487|r 76 AEIDGVIIDPATIN-PPDINDSIIIEGIGGLLV-PLTTEYLFIDLIER--WQFPIILCARTSLG 135 (217)
Q Consensus 76 ~~~~~~~i~~~~~~-~~~~~D~viIEGagg~~~-~~~~~~~~~dla~~--l~~~vILV~~~~~g 135 (217)
+..+. ...+... .+..+|++|.+-...... +........++.+. -+..|||-++.-..
T Consensus 80 ~a~~~--~~~a~~~l~~~~~dlvVLDEi~~ai~~gli~~~~v~~~l~~rp~~~evVlTGr~~p~ 141 (172)
T pfam02572 80 AAREA--WEKAKEALASGSYDLVVLDELNYALKYGYLDLEEVLELLRNRPEGQHVVLTGRGAPP 141 (172)
T ss_pred HHHHH--HHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 99999--999999975889899973557999755996899999999828998779998999999
No 299
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=87.67 E-value=1.1 Score=23.63 Aligned_cols=41 Identities=24% Similarity=0.215 Sum_probs=28.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH--------HCCCCCCEECCCCCCCHH
Q ss_conf 299983589874799999999998--------404861201388738068
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHAL--------NAYYWKPIQSGMYEETDS 45 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l--------~~~~~KPv~~G~~~~~D~ 45 (217)
-++|.|. |.+|||..+..|++.+ ++..|+-+.+|..+..+.
T Consensus 3 l~~I~Gp-T~~GKT~~ai~lA~~~g~~iis~D~~Q~y~el~igs~rp~~~ 51 (232)
T pfam01745 3 LYLIWGA-TCTGKTAEAIALAKETGWPVIVLDRVQCCSQLATGSGRPLPA 51 (232)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCHH
T ss_conf 6899788-777716999999999599779620344300113677899979
No 300
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=87.64 E-value=0.81 Score=24.56 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=26.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 32999835898747999999999984048612
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKP 34 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP 34 (217)
|-|-|+--.-|||||++++-|+++|...|+|-
T Consensus 105 ~VIav~N~KGGVGKTTtav~LA~~LA~~G~RV 136 (387)
T TIGR03453 105 QVIAVTNFKGGSGKTTTSAHLAQYLALRGYRV 136 (387)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 08999788876569999999999999779988
No 301
>PRK06321 replicative DNA helicase; Provisional
Probab=87.56 E-value=2.1 Score=21.94 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=24.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 299983589874799999999998404861201
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ 36 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~ 36 (217)
-++|.|..+++|||..++.+++..-...-+||.
T Consensus 227 dliviaaRPsmGKTalalnia~~~a~~~~~~v~ 259 (472)
T PRK06321 227 NLMILAARPAMGKTALALNIAENFCFQNRLPVG 259 (472)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 579985389997799999999999985699469
No 302
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=87.47 E-value=0.47 Score=26.01 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99983589874799999999998404861
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
+=||||+ |||+++-.++|-|+..|.+
T Consensus 491 V~vTGTN---GKTt~~RL~Ahil~~~G~~ 516 (876)
T TIGR02068 491 VAVTGTN---GKTTTTRLVAHILKQTGKV 516 (876)
T ss_pred EEEECCC---CCHHHHHHHHHHHHHCCCE
T ss_conf 8872689---8355788999999856982
No 303
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=87.46 E-value=0.6 Score=25.38 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 83299983589874799999999998
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
++.+.|.|+ ||+|||+.+.-|++.+
T Consensus 23 ~rH~aIlg~-TGsGKS~tv~vLl~~l 47 (218)
T pfam01935 23 SRHFAILGS-TGSGKSNTVAVLLEEL 47 (218)
T ss_pred HHHEEEECC-CCCCHHHHHHHHHHHH
T ss_conf 421478726-9997699999999999
No 304
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=87.39 E-value=0.53 Score=25.72 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=16.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999835898747999999999984
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
++.||. |||||||. +-|+-+||
T Consensus 34 ViltGP-SGSGKTTL-LtLiG~LR 55 (220)
T TIGR02982 34 VILTGP-SGSGKTTL-LTLIGGLR 55 (220)
T ss_pred EEEECC-CCCCHHHH-HHHHHHHC
T ss_conf 984378-89846889-99887625
No 305
>PRK12736 elongation factor Tu; Reviewed
Probab=87.33 E-value=2.2 Score=21.86 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=65.0
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 98358987479999999999840486120138873806899999855787311443001451034788999850235078
Q gi|254780487|r 7 IVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDPA 86 (217)
Q Consensus 7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 86 (217)
++--|-|.|||+.+-.|.+.+...+.+.... .... ..+...+..+.+++..
T Consensus 16 ~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~-------------~~~~----------------D~~~eEr~rGiTid~~ 66 (394)
T PRK12736 16 GTIGHVDHGKTTLTAAITKVLAERGLAQAKD-------------YASI----------------DAAPEEKARGITINTA 66 (394)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCHHHH-------------HHHH----------------CCCHHHHCCCCEEEEE
T ss_conf 9995128848989989750454506510222-------------2331----------------1665562478217841
Q ss_pred HHHHH-HHCCEEEEECCCC-CCCC-CCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 86422-3288799922765-5566-76753089999974794489705776504579999999984799079999769
Q gi|254780487|r 87 TINPP-DINDSIIIEGIGG-LLVP-LTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG 161 (217)
Q Consensus 87 ~~~~~-~~~D~viIEGagg-~~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~ 161 (217)
+.... ++..+.+|.-.|. -|.+ ...+.+.+| -++||+++..|-..+|.--+..++..|++-.-|.+|+
T Consensus 67 ~~~~~t~~~~~~~iD~PGH~~fi~nmi~Ga~~~D-------~alLVV~A~~G~~~QT~EHl~l~~~lgv~~~IV~vnK 137 (394)
T PRK12736 67 HVEYETEKRHYAHVDCPGHADYVKNMITGAAQMD-------GAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNK 137 (394)
T ss_pred EEEEECCCEEEEEEECCCCHHHHCCEEEEECCCC-------EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 8999728836999888972543110444353466-------5899998587746779999999998299915999988
No 306
>PRK05858 hypothetical protein; Provisional
Probab=87.14 E-value=2.2 Score=21.79 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=30.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHCCCCE
Q ss_conf 794489705776504579999999984799079999769778005999998619989
Q gi|254780487|r 123 QFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPKVEETIVKIGRIPH 179 (217)
Q Consensus 123 ~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~~~~~le~~~~ipv 179 (217)
+-+||.+++ .|+...+...+..+.++++++.-||+|+...-..+...+...+-.+
T Consensus 426 ~r~Vv~i~G--DG~f~m~~qEL~Ta~r~~lpv~ivV~NN~~yg~~~~~~~~~~g~~~ 480 (543)
T PRK05858 426 QRQVVLLQG--DGAFGFSGMEWDTLVRHNVPVVSVIGNNGIWGLEKHPMEALYGYSV 480 (543)
T ss_pred CCCEEEEEC--CHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHCCCCC
T ss_conf 994899988--5698756999999999786939999828625899999998639876
No 307
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=87.13 E-value=0.88 Score=24.33 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=21.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 2999835898747999999999984048
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
-|+|+|. ||+|||+....|++.+....
T Consensus 3 liLitG~-TGSGKTTtl~all~~i~~~~ 29 (198)
T cd01131 3 LVLVTGP-TGSGKSTTLAAMIDYINKNK 29 (198)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHCCCC
T ss_conf 8999899-99979999999998536378
No 308
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=87.06 E-value=2.2 Score=21.76 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=18.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
-|=||||+ |||+++-.+.+.|+..+.|
T Consensus 113 vigVTGTN---GKTTt~~~i~~il~~~g~~ 139 (953)
T PRK11929 113 VVAVTGTN---GKTSCAQWLAQMLTRLGKP 139 (953)
T ss_pred EEEEECCC---CHHHHHHHHHHHHHHCCCC
T ss_conf 89997999---7999999999999867998
No 309
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=87.05 E-value=0.94 Score=24.14 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=19.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 832999835898747999999999984
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
.+.++|.|+ ||+|||.+-..++....
T Consensus 42 ~~H~lv~G~-tGsGKT~~i~~li~~~~ 67 (410)
T cd01127 42 EAHTMIIGT-TGTGKTTQIRELLASIR 67 (410)
T ss_pred HCCEEEECC-CCCCHHHHHHHHHHHHH
T ss_conf 274799889-99988999999999999
No 310
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=87.04 E-value=0.72 Score=24.88 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=17.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 3299983589874799999999998
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
+.|+|+|- ||+|||+..-+|+..+
T Consensus 145 ~nilVsGg-TGSGKTTllnaL~~~i 168 (323)
T PRK13833 145 LNIVISGG-TGSGKTTLANAVIAEI 168 (323)
T ss_pred CCEEEECC-CCCCHHHHHHHHHHHH
T ss_conf 96899917-7775689999999864
No 311
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=86.86 E-value=1.3 Score=23.16 Aligned_cols=47 Identities=26% Similarity=0.231 Sum_probs=36.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHC-CCCCCEECCCCCCCHH-HHHHHH
Q ss_conf 29998358987479999999999840-4861201388738068-999998
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNA-YYWKPIQSGMYEETDS-KTIHRI 51 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~-~~~KPv~~G~~~~~D~-~~~~~~ 51 (217)
=|.|=|-+ |+|||+.+-.|.+.|+. .+++-+-+-.|.++.. ..++..
T Consensus 4 fiviEGiD-GaGKTT~~~~l~~~l~~l~g~~~~~t~EPg~t~~ge~IR~~ 52 (211)
T TIGR00041 4 FIVIEGID-GAGKTTQLNLLKKLLKELEGYKVLFTREPGGTPIGEKIREL 52 (211)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 58885115-87589999999999775138347887189998789999999
No 312
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=86.65 E-value=2.4 Score=21.62 Aligned_cols=126 Identities=21% Similarity=0.214 Sum_probs=54.1
Q ss_pred EEEEECCCCCCCHHHHHHHHH-HHH----HCCCCCCEECCCCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCHHHHHHHH
Q ss_conf 299983589874799999999-998----40486120138873806899999855787311-443001451034788999
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALV-HAL----NAYYWKPIQSGMYEETDSKTIHRIGRIPKSHI-IPEKWKLRTPASPHLAAE 77 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~-~~l----~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (217)
.++..=|+.|=|||+.++|++ |++ |+..++ |-.|......-..+....+...... ....+..... ..+....
T Consensus 3 Gli~vytG~GKGKTTAAlG~alRA~G~G~rV~ivQ-FlKg~~~~GE~~~l~~l~~i~~~~~g~~~~~~~~~~-~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ-FLKGGWKYGELKALERLPNIEIHRMGRGFFWTTEND-EEDIAAA 80 (159)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE-EECCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCC-HHHHHHH
T ss_conf 47999957999708999999999844999899999-815898755999998489968998899973227987-9999999
Q ss_pred HHHCCCHHHHHHH-HHHCCEEEEECCCCC-CCCCCCCCCHHHHHHH--HCCCEEEEECCC
Q ss_conf 8502350788642-232887999227655-5667675308999997--479448970577
Q gi|254780487|r 78 IDGVIIDPATINP-PDINDSIIIEGIGGL-LVPLTTEYLFIDLIER--WQFPIILCARTS 133 (217)
Q Consensus 78 ~~~~~i~~~~~~~-~~~~D~viIEGagg~-~~~~~~~~~~~dla~~--l~~~vILV~~~~ 133 (217)
.+. ...+...+ +..+|++|.+-.... ..+........++.+. -+..|||-++.-
T Consensus 81 ~~~--~~~a~~~l~~~~~dlvVLDEi~~a~~~gli~~~~v~~~l~~rp~~~evVlTGr~~ 138 (159)
T cd00561 81 AEG--WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHH--HHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 999--9999999868898999736689999859917999999998489997899969999
No 313
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=86.62 E-value=2.4 Score=21.62 Aligned_cols=136 Identities=20% Similarity=0.170 Sum_probs=62.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
+|.+.| +-|.|||+++--|+.-+ |..+......+.+.+.... ...+.+..........+..+.++
T Consensus 9 ~i~~~G-hVD~GKSTL~G~Ll~~~----------g~~~~~~~~~~~~~~~~~g----~~s~~~a~~~D~~~eEr~rGiTi 73 (426)
T PRK12317 9 NLAVIG-HVDHGKSTLVGRLLYET----------GAVDEHIIEEYEEEAKKKG----KESFKFAWVMDRLKEERERGVTI 73 (426)
T ss_pred EEEEEE-ECCCCHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHCC----CCCCEEEEECCCCHHHHHCCCEE
T ss_conf 999995-22876888876898772----------9944899999998998648----77521432125786687558278
Q ss_pred HHHHHHHH-HHCCEEEEECCCCC-CCC-CCCCCCHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 07886422-32887999227655-566-76753089999974794489705776--504579999999984799079999
Q gi|254780487|r 84 DPATINPP-DINDSIIIEGIGGL-LVP-LTTEYLFIDLIERWQFPIILCARTSL--GTINHSLLSLETLRNRNINIIGIA 158 (217)
Q Consensus 84 ~~~~~~~~-~~~D~viIEGagg~-~~~-~~~~~~~~dla~~l~~~vILV~~~~~--g~i~~~~l~~~~~~~~g~~i~GiI 158 (217)
+.++.... ++..+.+|.-+|.- |.+ ...+.+.+| -++||++++. |...++.--+..++..|++-.-|+
T Consensus 74 d~~~~~f~~~~~~~~iiD~PGH~~fi~nmi~Gas~~D-------~ailvV~A~~~~G~~~QT~eHl~l~~~lgi~~iiV~ 146 (426)
T PRK12317 74 DLAHKKFETDKYYFTIIDCPGHRDFVKNMITGASQAD-------AAVLVVSARDAGGVMPQTREHVFLARTLGINQLIVA 146 (426)
T ss_pred EEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCCC-------EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8316999549816999878963667877874534677-------279999636566764778999999998099839999
Q ss_pred ECC
Q ss_conf 769
Q gi|254780487|r 159 FIG 161 (217)
Q Consensus 159 lN~ 161 (217)
+|+
T Consensus 147 vnK 149 (426)
T PRK12317 147 INK 149 (426)
T ss_pred EEC
T ss_conf 953
No 314
>PRK02496 adk adenylate kinase; Provisional
Probab=86.56 E-value=0.92 Score=24.20 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 98329998358987479999999999840486120138
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG 38 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G 38 (217)
|+ +|++.|- +|+||++.+..|+..+ ++.-+.+|
T Consensus 1 m~-riillG~-PGSGKgTqa~~L~~~~---~~~his~G 33 (185)
T PRK02496 1 MA-RLIFLGP-PGAGKGTQAVVLAEHL---QIPHISTG 33 (185)
T ss_pred CE-EEEEECC-CCCCHHHHHHHHHHHH---CCEEECHH
T ss_conf 91-8999799-9999899999999996---99778888
No 315
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=86.35 E-value=2.5 Score=21.53 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=53.0
Q ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHC-C-CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC-----CC
Q ss_conf 887999227655566767530899999747-9-4489705776504579999999984799079999769778-----00
Q gi|254780487|r 94 NDSIIIEGIGGLLVPLTTEYLFIDLIERWQ-F-PIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSM-----PK 166 (217)
Q Consensus 94 ~D~viIEGagg~~~~~~~~~~~~dla~~l~-~-~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~-----~~ 166 (217)
+-+.+|+..|.. + ...++.+.+. + -++||+++..|.-.++.-.+..++..|+++. +++|+.-. ..
T Consensus 67 ~~in~iDtPGh~------d-F~~~~~~al~~~D~allVVda~~Gv~~qT~~~~~~a~~~~~p~i-vviNKiD~~~ad~~~ 138 (179)
T cd01890 67 YLLNLIDTPGHV------D-FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEII-PVINKIDLPSADPER 138 (179)
T ss_pred EEEEEEECCCCC------C-CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCCCCHHH
T ss_conf 489999899864------5-17789889975442789986477873748999999987699889-998655567789999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 59999986199899994788888887999999
Q gi|254780487|r 167 VEETIVKIGRIPHLGRLPKIDPIDPDVLHQKF 198 (217)
Q Consensus 167 ~~~~le~~~~ipvLG~iP~~~~~~~~~l~~~~ 198 (217)
..+.+++..++...-++| .+..+-+.+.+++
T Consensus 139 v~~~i~~~~g~~~~~~v~-vSA~~g~gv~~Ll 169 (179)
T cd01890 139 VKQQIEDVLGLDPSEAIL-VSAKTGLGVEDLL 169 (179)
T ss_pred HHHHHHHHHCCCCCCEEE-EECCCCCCHHHHH
T ss_conf 999999986889767488-4378897989999
No 316
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=86.17 E-value=0.87 Score=24.35 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=24.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 29998358987479999999999840486120138
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG 38 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G 38 (217)
+|++.|. +|+||++.+..|++.+ ++..+.+|
T Consensus 1 ri~l~G~-PGsGKgTqa~~La~~~---~~~~is~g 31 (194)
T cd01428 1 RILLLGP-PGSGKGTQAERLAKKY---GLPHISTG 31 (194)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHH---CCEEECHH
T ss_conf 9899899-9998799999999997---98467688
No 317
>PRK06483 short chain dehydrogenase; Provisional
Probab=86.09 E-value=2.5 Score=21.50 Aligned_cols=33 Identities=30% Similarity=0.256 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 98329998358987479999999999840486120138
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG 38 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G 38 (217)
|+|.++|||-++|+|+ ++++.|-..|.+=+.++
T Consensus 1 M~ktVlVTGas~GIG~-----aiA~~la~~Ga~Vvi~~ 33 (236)
T PRK06483 1 MSAPILITGAGQRIGL-----ALAKHLLAQGQPVIVSY 33 (236)
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEE
T ss_conf 9987999789988999-----99999998899899995
No 318
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=86.02 E-value=0.93 Score=24.15 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8329998358987479999999999840
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
+.+++.+|+ .|+|||+++..++++++.
T Consensus 40 aHAYLF~GP-RGvGKTT~ARIfAKaLNC 66 (718)
T PRK07133 40 SHAYLFSGP-HGTGKTSVAKIFANALNC 66 (718)
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf 505862389-986889999999999679
No 319
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=85.89 E-value=2.6 Score=21.38 Aligned_cols=63 Identities=17% Similarity=0.125 Sum_probs=37.7
Q ss_pred HHCCEEEEECCCCCCCCCCCCCCHHHHHHHH-CCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 3288799922765556676753089999974-794-4897057765045799999999847990799997697
Q gi|254780487|r 92 DINDSIIIEGIGGLLVPLTTEYLFIDLIERW-QFP-IILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGD 162 (217)
Q Consensus 92 ~~~D~viIEGagg~~~~~~~~~~~~dla~~l-~~~-vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~ 162 (217)
.++.+.+|..+|.. ....+..+.+ .++ +++|.++..|--.++.-.+..++..|+++. +++|+.
T Consensus 65 ~~~~i~~iDtPGh~-------~f~~~~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~~p~i-v~vNKi 129 (185)
T pfam00009 65 KKRHINIIDTPGHV-------DFTKEMIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLGVPII-VFINKM 129 (185)
T ss_pred CCCEEEEEECCCCC-------CHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEE-EEEECC
T ss_conf 89368999899871-------439999999864656429998676853230999999998289879-999773
No 320
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=85.84 E-value=0.86 Score=24.37 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=17.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 3299983589874799999999998
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
+.++|+|- ||+|||+...+|+..+
T Consensus 150 ~nilI~G~-TgsGKTTll~all~~i 173 (320)
T PRK13894 150 RNILVIGG-TGSGKTTLVNAIINEM 173 (320)
T ss_pred CCEEEECC-CCCCHHHHHHHHHHHH
T ss_conf 75899858-8865689999998632
No 321
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=85.79 E-value=0.91 Score=24.21 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=27.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC
Q ss_conf 9832999835898747999999999984048612013
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS 37 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~ 37 (217)
|.|-|+..|- ||||||.++--|++.+.+=|.|-=+|
T Consensus 49 ~pkNILmIGP-TGvGKTeIARrLAkl~~aPFvkveAT 84 (442)
T PRK05201 49 TPKNILMIGP-TGVGKTEIARRLAKLANAPFIKVEAT 84 (442)
T ss_pred CCCCEEEECC-CCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 6431688788-88667899999999848985875213
No 322
>PRK09291 short chain dehydrogenase; Provisional
Probab=85.68 E-value=0.38 Score=26.61 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 98329998358987479999999999840486120138
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG 38 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G 38 (217)
|+|.++|||.++|.||.+ ++.|-..|++-+.++
T Consensus 1 MgK~vLITGAssGIGrai-----A~~la~~G~~Vi~~~ 33 (257)
T PRK09291 1 MSKTILITGAGSGFGREV-----ALRLARKGHRVIAGV 33 (257)
T ss_pred CCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEE
T ss_conf 999899968985899999-----999998799899996
No 323
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=85.68 E-value=0.91 Score=24.23 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8329998358987479999999999840
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
+.+|+-+|+. |+|||+++-.|+++++.
T Consensus 38 ~hayLf~Gpr-G~GKTs~Ari~akalnc 64 (541)
T PRK05563 38 AHAYLFCGTR-GTGKTSTAKIFAKAVNC 64 (541)
T ss_pred CEEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf 2045303879-95899999999999579
No 324
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=85.63 E-value=0.92 Score=24.18 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 3299983589874799999999998
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
++|+|.|. +|+||||.+-.|++.+
T Consensus 1 ~riiilG~-pGaGK~T~A~~La~~~ 24 (178)
T COG0563 1 MRILILGP-PGAGKSTLAKKLAKKL 24 (178)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHC
T ss_conf 97999899-9998899999999976
No 325
>KOG3308 consensus
Probab=85.57 E-value=1.7 Score=22.52 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=24.7
Q ss_pred CCCEEE--EECCCCCCCHHHHHHHHHHHHHC-------CCCCCEE
Q ss_conf 983299--98358987479999999999840-------4861201
Q gi|254780487|r 1 MKLRLV--IVGTDTSVGKTIFASALVHALNA-------YYWKPIQ 36 (217)
Q Consensus 1 M~~~i~--I~GT~t~vGKT~vs~~L~~~l~~-------~~~KPv~ 36 (217)
|.|.|. |.|. |++|||+++-.|.+.|.. .||||..
T Consensus 1 s~K~~ivgiSG~-TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~ 44 (225)
T KOG3308 1 SMKTLIVGISGC-TNSGKTTLAKSLHRFFPGCSLIHQDDFYKPEN 44 (225)
T ss_pred CCEEEEEEEECC-CCCCHHHHHHHHHHHCCCCEEECCCCCCCCHH
T ss_conf 961899986424-67877689999998736874640223467553
No 326
>PRK13973 thymidylate kinase; Provisional
Probab=85.53 E-value=2.7 Score=21.27 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=35.4
Q ss_pred CCCE-EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCC-HHHHHHHHH
Q ss_conf 9832-999835898747999999999984048612013887380-689999985
Q gi|254780487|r 1 MKLR-LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEET-DSKTIHRIG 52 (217)
Q Consensus 1 M~~~-i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~-D~~~~~~~~ 52 (217)
|.-. |.+=|.+ |+|||+.+-.|...|+..++|-+.+..|..+ -...++...
T Consensus 1 MkG~fIv~EGiD-GsGKsTq~~~L~~~L~~~g~~v~~trePg~t~~~e~ir~~l 53 (216)
T PRK13973 1 MRGRFITFEGGE-GAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVL 53 (216)
T ss_pred CCCEEEEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 982499988999-99899999999999997799579940989984089999998
No 327
>COG1160 Predicted GTPases [General function prediction only]
Probab=85.45 E-value=2.7 Score=21.25 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=39.7
Q ss_pred HCCEEEEECCC----CCCCCCCCCCCHHHHHHHH-CCCE-EEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 28879992276----5556676753089999974-7944-897057765045799999999847990799997697
Q gi|254780487|r 93 INDSIIIEGIG----GLLVPLTTEYLFIDLIERW-QFPI-ILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGD 162 (217)
Q Consensus 93 ~~D~viIEGag----g~~~~~~~~~~~~dla~~l-~~~v-ILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~ 162 (217)
+..+.+|+.|| +--....+.++..+-.+.. .+.| +||.++..|-..+-.--..+..+.|..+. +++|+.
T Consensus 225 ~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~v-IvvNKW 299 (444)
T COG1160 225 GRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIV-IVVNKW 299 (444)
T ss_pred CEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEE-EEEECC
T ss_conf 818999987787746641242688750546767865688999998887836889999999997589749-999753
No 328
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=85.31 E-value=2.8 Score=21.21 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=61.3
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 99835898747999999999984048612013887380689999985578731144300145103478899985023507
Q gi|254780487|r 6 VIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDP 85 (217)
Q Consensus 6 ~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 85 (217)
.|.| +.|.|||+++-.|+..+.. .........+..+.... ...+.|..........+..+.+++.
T Consensus 3 ~iiG-HvD~GKSTL~g~lL~~~g~----------i~~~~~~k~~~~~~~~g----k~s~~~a~~lD~~~~ErerGiTI~~ 67 (219)
T cd01883 3 VVIG-HVDAGKSTTTGHLLYLLGG----------VDKRTIEKYEKEAKEMG----KGSFKYAWVLDTLKEERERGVTIDV 67 (219)
T ss_pred EEEE-CCCCCHHHHHHHHHHHCCC----------CCHHHHHHHHHHHHHCC----CCCCEEEEEECCCHHHHHCCCCEEE
T ss_conf 9996-6899899999999998599----------76889999999998549----9875055661389879858925885
Q ss_pred HHHHH-HHHCCEEEEECCCCC-CCC-CCCCCCHHHHHHHHCCCEEEEECCCCCHH-------HHHHHHHHHHHHCCCEEE
Q ss_conf 88642-232887999227655-566-76753089999974794489705776504-------579999999984799079
Q gi|254780487|r 86 ATINP-PDINDSIIIEGIGGL-LVP-LTTEYLFIDLIERWQFPIILCARTSLGTI-------NHSLLSLETLRNRNINII 155 (217)
Q Consensus 86 ~~~~~-~~~~D~viIEGagg~-~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~i-------~~~~l~~~~~~~~g~~i~ 155 (217)
++... .+++.+.||.-.|.- +.+ ...+.+.+| -.|||+++..|.. .++.--+..++..|++-.
T Consensus 68 ~~~~f~~~~~~~~iiDtPGH~df~~~mi~g~~~ad-------~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~i 140 (219)
T cd01883 68 GLAKFETEKYRFTILDAPGHRDFVPNMITGASQAD-------VAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQL 140 (219)
T ss_pred EEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHCC-------EEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 89999849936999878972667889998775316-------68999985767510366777659999999998499748
Q ss_pred EEEECC
Q ss_conf 999769
Q gi|254780487|r 156 GIAFIG 161 (217)
Q Consensus 156 GiIlN~ 161 (217)
-|.+|+
T Consensus 141 IVavNK 146 (219)
T cd01883 141 IVAVNK 146 (219)
T ss_pred EEEEEC
T ss_conf 999987
No 329
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=85.31 E-value=1.3 Score=23.27 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=22.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
-+...|- +|||||++.-.+++++.+.|++
T Consensus 351 IlclvGp-PGvGKTSl~~sIA~al~r~f~r 379 (784)
T PRK10787 351 ILCLVGP-PGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHCCCEEE
T ss_conf 7996469-9877246999999985898699
No 330
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=85.12 E-value=2.8 Score=21.15 Aligned_cols=178 Identities=16% Similarity=0.132 Sum_probs=89.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE---------ECCC-CCCCHH-HHHHHHHCCCCCCCC--------CCC-
Q ss_conf 29998358987479999999999840486120---------1388-738068-999998557873114--------430-
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPI---------QSGM-YEETDS-KTIHRIGRIPKSHII--------PEK- 63 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv---------~~G~-~~~~D~-~~~~~~~~~~~~~~~--------~~~- 63 (217)
.+=+.|.+.|+|-|+++.-++.+++...-+-+ .+|. .-+.|+ .-+.++...+.-... -++
T Consensus 106 ~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~~~~ 185 (366)
T COG4963 106 ELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTRLAS 185 (366)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 89999605886668999999999864148738999768887612343078721458988609787607877789861688
Q ss_pred --CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCC-CCHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf --0145103478899985023507886422328879992276555667675-3089999974794489705776504579
Q gi|254780487|r 64 --WKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTE-YLFIDLIERWQFPIILCARTSLGTINHS 140 (217)
Q Consensus 64 --~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~-~~~~dla~~l~~~vILV~~~~~g~i~~~ 140 (217)
-.+..+.++...-.............+...+|++|+.=. -...+.... ++.+| .+++|+.-...++-.+
T Consensus 186 ~l~ll~a~~~~~~~~d~~~~~~~~Ll~~~~~~~~~vV~Dlp-~~~~~~t~~vL~~Sd-------~iviv~e~sl~slR~a 257 (366)
T COG4963 186 GLKLLAAPTELAKNYDLKTGAVERLLDLLRGSFDFVVVDLP-NIWTDWTRQVLSGSD-------EIVIVAEPSLASLRNA 257 (366)
T ss_pred CCEEECCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEECCC-CCCCHHHHHHHHCCC-------EEEEEECCCHHHHHHH
T ss_conf 76330377445652153312699999976402883897189-766258999986288-------4999963638989999
Q ss_pred HHHHHHHHHCC--CEEEEEEECCCCCCC--HHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 99999998479--907999976977800--59999986199899994788888
Q gi|254780487|r 141 LLSLETLRNRN--INIIGIAFIGDSMPK--VEETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 141 ~l~~~~~~~~g--~~i~GiIlN~~~~~~--~~~~le~~~~ipvLG~iP~~~~~ 189 (217)
.--+..+++.+ -.-.-.|+|+...+. ..+.+++..+++-++.+|....+
T Consensus 258 k~lld~l~~~r~~~~~p~lv~n~~~~~~~~~~~dl~~~~~i~~~~~~p~d~~~ 310 (366)
T COG4963 258 KELLDELKRLRPNDPKPILVLNRVGVPKRPEPSDLEEILGIESLLVLPFDPAL 310 (366)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCHHCCCCCCCHH
T ss_conf 99999999737798895688652278889999999888488400136677054
No 331
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=84.96 E-value=1.4 Score=23.07 Aligned_cols=30 Identities=20% Similarity=0.035 Sum_probs=24.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
.|=|+-=.-|||||++++-|+++|-..|+|
T Consensus 108 VIAVaN~KGGVGKTTTavnLA~~LAl~G~R 137 (387)
T PHA02519 108 VLAVMSHKGGVYKTSSAVHTAQWLALQGHR 137 (387)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 899861688776999999999999976996
No 332
>PRK04195 replication factor C large subunit; Provisional
Probab=84.91 E-value=1.1 Score=23.60 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 32999835898747999999999984
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
|.++++|. +|+|||+++..|++-+.
T Consensus 41 k~lLL~GP-pGvGKTT~a~~lAk~~g 65 (403)
T PRK04195 41 KALLLYGP-PGVGKTSLAHALANDYG 65 (403)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHC
T ss_conf 46998893-99879999999999849
No 333
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=84.62 E-value=1.5 Score=22.91 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=24.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
.|-|+-=.-|||||++++-|+++|-..|+|
T Consensus 108 VIAVaNqKGGvGKTTTavnLA~~LAl~G~R 137 (388)
T PRK13705 108 VIGVAAHKGGVYKTSVSVHLAQDLALKGLR 137 (388)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 899952788855999999999999977990
No 334
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=84.46 E-value=3 Score=20.97 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 32999835898747999999999984
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
+.+-|.|. ||+|||++.-.|+|-+.
T Consensus 368 e~vaiVG~-SGsGKSTL~~LL~r~yd 392 (575)
T PRK11160 368 EKVALLGR-TGCGKSTLLQLLTRAWD 392 (575)
T ss_pred CEEEEECC-CCCCHHHHHHHHHCCCC
T ss_conf 88999889-99759999999862367
No 335
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; InterPro: IPR005757 The tripeptide L-ananyl-gamma-D-glutamyl-meso-diaminopimelic acid is efficiently re-cycled during the formation of bacterial cell wall murein. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase is an essential enzyme in this process which links the tripeptide to UDP-N-acetylmuramate.; GO: 0016874 ligase activity, 0007047 cell wall organization and biogenesis.
Probab=84.41 E-value=1 Score=23.85 Aligned_cols=27 Identities=44% Similarity=0.543 Sum_probs=24.2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 999835898747999999999984048612
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKP 34 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP 34 (217)
+=|+||+ |||+++.-+..-|-..|+||
T Consensus 106 laV~GTH---GKTTT~~M~~WvLE~~G~~p 132 (459)
T TIGR01081 106 LAVAGTH---GKTTTASMLAWVLEQCGLKP 132 (459)
T ss_pred EEEECCC---CCHHHHHHHHHHHHHCCCCC
T ss_conf 8950788---60468899999998637988
No 336
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=84.25 E-value=0.6 Score=25.34 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=25.2
Q ss_pred CEEEEEC---CCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 3299983---58987479999999999840486120
Q gi|254780487|r 3 LRLVIVG---TDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 3 ~~i~I~G---T~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
|-|+||+ |-.|-|||++|.||.++|+.-+.|.+
T Consensus 55 klilVTaitPTP~GEGKTTttIGL~~aL~~lgk~~~ 90 (577)
T PRK13506 55 KLVIVTAVTPTPLGEGKTVTTIGLTQGLNALGQKVC 90 (577)
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 499998568988989841109879999987198458
No 337
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=84.08 E-value=3.1 Score=20.87 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=59.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
.|.++| +-|.|||+.+--|++.+..- ++.....+.+.+.... ..++.+..........+..+..+
T Consensus 9 ni~~~G-hVD~GKSTL~G~Ll~~~~~v----------~~~~l~~~~~~~~~~g----~~s~~~a~~~D~~~~Er~rGiTi 73 (449)
T PTZ00336 9 NLVVVG-HVDAGKSTATGHLIYKCGGI----------DKRTIEKFEKEAAEIG----KASFKYAWVLDKLKAERERGITI 73 (449)
T ss_pred EEEEEE-CCCCCHHHHHHHHHHHCCCC----------CHHHHHHHHHHHHHHC----CCCHHHHHHHCCCHHHHCCCEEE
T ss_conf 999992-77896888899999874884----------7899999999998718----75143254512772232287589
Q ss_pred HHHHHHHHH-HCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECCCCCHHH-------HHHHHHHHHHHCCCEE
Q ss_conf 078864223-288799922765556676753089999974794-4897057765045-------7999999998479907
Q gi|254780487|r 84 DPATINPPD-INDSIIIEGIGGLLVPLTTEYLFIDLIERWQFP-IILCARTSLGTIN-------HSLLSLETLRNRNINI 154 (217)
Q Consensus 84 ~~~~~~~~~-~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~-vILV~~~~~g~i~-------~~~l~~~~~~~~g~~i 154 (217)
+.++..... ..-+.++.-.|.- ++.--=++...+++ +|||+++..|... ++.--+..++..|++-
T Consensus 74 d~~~~~f~t~~~~~~iiD~PGH~------~fi~nmi~Gas~aD~aiLVVdA~~G~~e~g~~~~gQTreHl~i~~~Lgv~~ 147 (449)
T PTZ00336 74 DIALWKFESPKSVFTIIDAPGHR------DFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQ 147 (449)
T ss_pred EEEEEEEECCCEEEEEEECCCHH------HHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCE
T ss_conf 86799997498489998689468------889999976500676799998787741035566775399999998669977
Q ss_pred EEEEECC
Q ss_conf 9999769
Q gi|254780487|r 155 IGIAFIG 161 (217)
Q Consensus 155 ~GiIlN~ 161 (217)
.-|.+|+
T Consensus 148 iiV~vNK 154 (449)
T PTZ00336 148 MVVCCNK 154 (449)
T ss_pred EEEEEEC
T ss_conf 9999862
No 338
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=84.05 E-value=1.1 Score=23.76 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=19.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 2999835898747999999999984
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
.|+|-|| ||||||+++..|+.-|.
T Consensus 264 iILIGGa-SGvGKSTlAseLA~RLG 287 (492)
T PRK12337 264 HVLLGGV-SGTGKSVLAAELAYRLG 287 (492)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHC
T ss_conf 9996078-88668889999999609
No 339
>PRK06696 uridine kinase; Validated
Probab=84.00 E-value=1.5 Score=22.84 Aligned_cols=28 Identities=36% Similarity=0.461 Sum_probs=23.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 29998358987479999999999840486
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
.|=|.|- +++|||+++-.|+..|+..+.
T Consensus 28 ~VgIdG~-~gSGKTTlA~~La~~L~~~G~ 55 (227)
T PRK06696 28 RVAIDGI-TASGKTTFANELAEEIKKRGR 55 (227)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf 9997789-987879999999999974699
No 340
>CHL00071 tufA elongation factor Tu
Probab=83.94 E-value=3.2 Score=20.83 Aligned_cols=119 Identities=15% Similarity=0.102 Sum_probs=59.2
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 98358987479999999999840486120138873806899999855787311443001451034788999850235078
Q gi|254780487|r 7 IVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDPA 86 (217)
Q Consensus 7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 86 (217)
++--|-|.|||+.+-.|...+...+-+-. ......+ .....+..+.+++..
T Consensus 16 ~~~GHVD~GKSTL~g~L~~~~~~~~~~~~-------------~~~~~~D----------------~~~eEr~rGiTid~~ 66 (409)
T CHL00071 16 GTIGHVDHGKTTLTAAITMTLAANGGAKG-------------KKYDEID----------------SAPEEKARGITINTA 66 (409)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCHHH-------------HHHHHCC----------------CCHHHHHCCCEEEEC
T ss_conf 99954588399999998645300451334-------------3155323----------------797687369448802
Q ss_pred HHHH-HHHCCEEEEECCCC-CCCC-CCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 8642-23288799922765-5566-76753089999974794489705776504579999999984799079999769
Q gi|254780487|r 87 TINP-PDINDSIIIEGIGG-LLVP-LTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG 161 (217)
Q Consensus 87 ~~~~-~~~~D~viIEGagg-~~~~-~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~ 161 (217)
+... .....+.+|.-+|. -|.+ ...+.+.+| -++||+++..|-..+|.--+..++..|++..-|.+|+
T Consensus 67 ~~~~et~~~~~~~iD~PGH~~fv~nmi~Gas~aD-------~alLVV~A~~G~~~QTkEHl~l~~~lgV~~~IVavnK 137 (409)
T CHL00071 67 HVEYETENRHYAHVDCPGHADYVKNMITGAAQMD-------GAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNK 137 (409)
T ss_pred EEEEECCCEEEEEEECCCHHHHHHHHHHHHCCCC-------CEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 4899628759999867967899999875230158-------1289998687885004999999997399936555556
No 341
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=83.93 E-value=3.2 Score=20.83 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=20.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 299983589874799999999998
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
.+.|.|-.|++|||++++-++..+
T Consensus 20 ~l~vi~g~pg~GKS~~~~~~a~~~ 43 (186)
T pfam03796 20 DLIIIAARPSMGKTAFALNIARNA 43 (186)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 179999679998799999999999
No 342
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=83.85 E-value=1.2 Score=23.41 Aligned_cols=29 Identities=45% Similarity=0.639 Sum_probs=22.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 299983589874799999999998404861201
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQ 36 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~ 36 (217)
-+.|+|- ||+|||++-=+++.|| |-||+-
T Consensus 32 ~f~i~G~-tGAGKtsLldAI~yAL---YGkP~~ 60 (1063)
T TIGR00618 32 LFVICGK-TGAGKTSLLDAITYAL---YGKPVP 60 (1063)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHH---CCCCCC
T ss_conf 3677788-9983545999999987---288877
No 343
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=83.71 E-value=0.62 Score=25.25 Aligned_cols=33 Identities=33% Similarity=0.298 Sum_probs=25.4
Q ss_pred CEEEEEC---CCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 3299983---58987479999999999840486120
Q gi|254780487|r 3 LRLVIVG---TDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 3 ~~i~I~G---T~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
|-|+||+ |--|-|||++|.||.++|+.-+.|.+
T Consensus 39 klilVTaitPTP~GEGKTTttIGL~~aL~~~gk~~~ 74 (524)
T cd00477 39 KLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAI 74 (524)
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 599998468888888853109989999987366314
No 344
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=83.60 E-value=1.4 Score=23.01 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8329998358987479999999999840
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
..+++.+|+. |+|||+++..|+++++.
T Consensus 38 ~HAyLFsGpr-G~GKTt~ArilAk~LnC 64 (560)
T PRK06647 38 ANAYIFSGPR-GVGKTSSARAFARCLNC 64 (560)
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf 7436632899-87899999999999659
No 345
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=83.58 E-value=3.3 Score=20.74 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=27.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 299983589874799999999998404861201388
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM 39 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~ 39 (217)
+||. |-.+|||||+--+.=++.++..|..-| .|.
T Consensus 7 kIyl-G~apGVGKTy~ML~eA~~l~~~G~DVV-iG~ 40 (211)
T pfam02702 7 KIFL-GAAPGVGKTYAMLSEAHELLERGVDVV-IGY 40 (211)
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEE-EEE
T ss_conf 8985-359987789999999999997899569-999
No 346
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=83.45 E-value=1.6 Score=22.69 Aligned_cols=30 Identities=40% Similarity=0.331 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHH-HCCCCCC
Q ss_conf 3299983589874799999999998-4048612
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHAL-NAYYWKP 34 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l-~~~~~KP 34 (217)
+.+++.+||| |||.++.+|+..| +.+.+|=
T Consensus 438 raLl~MATGT--GKTrtaial~~rLlk~~~~kR 468 (1126)
T PRK11448 438 EILLAMATGT--GKTRTAIALMYRLLKAKRFKR 468 (1126)
T ss_pred CEEEEECCCC--CHHHHHHHHHHHHHHCCCCCE
T ss_conf 4688724888--589899999999996587672
No 347
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=83.44 E-value=3.3 Score=20.70 Aligned_cols=113 Identities=16% Similarity=0.183 Sum_probs=53.7
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 98358987479999999999840486120138873806899999855787311443001451034788999850235078
Q gi|254780487|r 7 IVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDPA 86 (217)
Q Consensus 7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 86 (217)
|.|- -|.|||++-...-.++...||.-+..- +-..=+.-+..-++... . -+++........
T Consensus 402 VvG~-AGaGKStmL~aAReawEa~GyrV~GaA-LsGkAAegLe~~sGI~S-------r--------TlAs~e~~w~~g-- 462 (1102)
T PRK13826 402 VIGR-AGAGKTTMMKAAREAWEAAGYRVVGGA-LAGKAAEGLEKEAGIAS-------R--------TLSSWELRWNQG-- 462 (1102)
T ss_pred EEEC-CCCCHHHHHHHHHHHHHHCCCEEEEEC-CCHHHHHHHHHCCCCCC-------H--------HHHHHHHHHCCC--
T ss_conf 9842-888788999999999997797798015-00789997753469530-------3--------389999874358--
Q ss_pred HHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC-CCCHHHHHH
Q ss_conf 8642232887999227655566767530899999747944897057-765045799
Q gi|254780487|r 87 TINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART-SLGTINHSL 141 (217)
Q Consensus 87 ~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~-~~g~i~~~~ 141 (217)
.. .-...|+++|.-+|= ++.-.-.-..+.+..-|++||||++. .++.|..--
T Consensus 463 r~-~L~~~dVlVIDEAGM--Vgsrqmarvl~~ae~aGAKvVLVGD~~QLQpIeAGa 515 (1102)
T PRK13826 463 RD-QLDNKTVFVLDEAGM--VSSRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAGA 515 (1102)
T ss_pred CC-CCCCCCEEEEECCCC--CCHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCH
T ss_conf 65-567873899845556--557999999999997599899968878827610468
No 348
>COG3944 Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=83.43 E-value=0.91 Score=24.22 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=19.7
Q ss_pred CHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 059999986199899994788888
Q gi|254780487|r 166 KVEETIVKIGRIPHLGRLPKIDPI 189 (217)
Q Consensus 166 ~~~~~le~~~~ipvLG~iP~~~~~ 189 (217)
..+|.+|+.++.|+||+||.+.+.
T Consensus 202 Ks~edie~~l~lPvLG~Ip~~~~~ 225 (226)
T COG3944 202 KSEEDIEEVLDLPVLGVIPNFEKE 225 (226)
T ss_pred CCHHHHHHHHCCCEEECCCCCCCC
T ss_conf 799999986099623024664446
No 349
>KOG1384 consensus
Probab=83.39 E-value=1.3 Score=23.15 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 32999835898747999999999984
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
|-++|.|| ||+||+-++.-|+.-|+
T Consensus 8 KVvvI~G~-TGsGKSrLaVdLA~rf~ 32 (348)
T KOG1384 8 KVVVIMGA-TGAGKSRLAVDLATRFP 32 (348)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHCC
T ss_conf 59999557-77770466788897578
No 350
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=83.37 E-value=0.67 Score=25.05 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=25.3
Q ss_pred CEEEEEC---CCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 3299983---58987479999999999840486120
Q gi|254780487|r 3 LRLVIVG---TDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 3 ~~i~I~G---T~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
|-|+||+ |--|-|||++|.||.++|+.-+.|.+
T Consensus 55 klIlVTaitPTP~GEGKTTttIGL~~aL~~lgk~~~ 90 (556)
T PRK13505 55 KLILVTAINPTPAGEGKTTVTVGLGDALNKIGKKTV 90 (556)
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 399998458888888863017989999987187437
No 351
>PRK13946 shikimate kinase; Provisional
Probab=83.32 E-value=1.4 Score=23.11 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=24.9
Q ss_pred CC-CEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 98-329998358987479999999999840486
Q gi|254780487|r 1 MK-LRLVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 1 M~-~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
|. |.||..|- +|+|||+|.-.|++.|...++
T Consensus 18 l~kknIvLIG~-mGsGKStvGk~LA~~L~~~fi 49 (195)
T PRK13946 18 LGKRTVVLVGL-MGAGKSTVGRRLATMLGLPFL 49 (195)
T ss_pred HCCCCEEEECC-CCCCHHHHHHHHHHHHCCCEE
T ss_conf 58995899899-999889999999999797989
No 352
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=83.30 E-value=1.4 Score=23.08 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=19.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 299983589874799999999998
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
-|.|+|- ||+|||++-=++|-||
T Consensus 32 LFlI~G~-TGAGKSTIlDAItfAL 54 (1047)
T PRK10246 32 LFAITGP-TGAGKTTLLDAICLAL 54 (1047)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHH
T ss_conf 7888899-9998899999999995
No 353
>PRK05595 replicative DNA helicase; Provisional
Probab=83.27 E-value=3.4 Score=20.66 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHH
Q ss_conf 2999835898747999999999
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVH 25 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~ 25 (217)
-++|.|..+++|||+.++.+++
T Consensus 202 dLiiiaaRP~mGKTa~alnia~ 223 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAE 223 (444)
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 7799985798980799999999
No 354
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=83.24 E-value=1.4 Score=23.03 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=21.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 29998358987479999999999840
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
.+++.|. +|+|||+++..|++.+-.
T Consensus 39 hlLf~Gp-pG~GKTt~a~~la~~l~~ 63 (318)
T PRK00440 39 HLLFAGP-PGTGKTTAALALARELYG 63 (318)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf 6988895-998899999999999769
No 355
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=83.21 E-value=1.4 Score=23.02 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 3299983589874799999999998404
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAY 30 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~ 30 (217)
..++.+|+. |+|||+++..|+++++..
T Consensus 40 HAyLF~Gpr-GtGKTT~ArilAkaLnC~ 66 (462)
T PRK06305 40 HAYLFSGIR-GTGKTTLARIFAKALNCQ 66 (462)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHCCC
T ss_conf 234303899-859999999999996799
No 356
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=83.16 E-value=1 Score=23.88 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=19.9
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999835898747999999999984
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
+|+||- ||+|||+.-=.||.+++
T Consensus 31 ~FLtG~-SGAGKttLLKLl~~~~~ 53 (215)
T TIGR02673 31 LFLTGP-SGAGKTTLLKLLYGALT 53 (215)
T ss_pred EEEECC-CCCCHHHHHHHHHHHCC
T ss_conf 788727-78617899999985269
No 357
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=83.06 E-value=3.4 Score=20.61 Aligned_cols=117 Identities=18% Similarity=0.228 Sum_probs=54.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC-------CCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHH
Q ss_conf 3299983589874799999999998404861201388-------73806899999855-787311443001451034788
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM-------YEETDSKTIHRIGR-IPKSHIIPEKWKLRTPASPHL 74 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~-------~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 74 (217)
+.+-|.|. ||+|||++.-.|++.+ |. +|. ..+-|...+++... ..+ .|+.|.......+
T Consensus 377 e~vaIVG~-SGsGKSTl~~LL~g~~------p~-~G~I~i~g~di~~i~~~~lr~~i~~V~Q-----~~~LF~~TI~eNI 443 (588)
T PRK11174 377 QRVALVGP-SGAGKTSLLNALLGFL------PY-QGSLKINGIELRELDPESWRKHLSWVGQ-----NPQLFHGTLRDNV 443 (588)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHC------CC-CCEEEECCEECCCCCHHHHHHHEEEECC-----CCCCCCCCHHHHH
T ss_conf 78999899-9864999999998728------98-8389999986030899999966035166-----6777766299865
Q ss_pred ------------HHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH--CCCEEEEECCCCC
Q ss_conf ------------999850235078864223288799922765556676753089999974--7944897057765
Q gi|254780487|r 75 ------------AAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERW--QFPIILCARTSLG 135 (217)
Q Consensus 75 ------------~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l--~~~vILV~~~~~g 135 (217)
....+....+.-...+++++|-.+=|+...+-. ...=-.-+||.+ ++|+++.-.+-..
T Consensus 444 ~~g~~~atdeei~~A~~~a~~~~~I~~Lp~GldT~vge~G~~LSG---GQrQRiaiARAll~~~~ILILDEaTSa 515 (588)
T PRK11174 444 LLANPDASDEQLQQALENAWVSEFVPLLPQGLDTPIGDQAAGLSV---GQAQRLALARALLQPCQLLLLDEPTAS 515 (588)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCH---HHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 335854334579999998624789984513223632288887799---999999999998379898999898779
No 358
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=82.96 E-value=3.5 Score=20.58 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=32.2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCH-HHHHHHHH
Q ss_conf 9998358987479999999999840486120138873806-89999985
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETD-SKTIHRIG 52 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D-~~~~~~~~ 52 (217)
|-|-|.+ |+|||+.+-.|.+.|+..+.+.+.+..|.+.. ...++...
T Consensus 3 IviEG~d-GsGKsT~~~~L~~~L~~~g~~v~~~~eP~~~~~~~~ir~~l 50 (200)
T cd01672 3 IVFEGID-GAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELL 50 (200)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 9998998-99999999999999997799389986999984678999987
No 359
>PRK07024 short chain dehydrogenase; Provisional
Probab=82.94 E-value=0.49 Score=25.92 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 98329998358987479999999999840486120138
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG 38 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G 38 (217)
|+|+++|||.++|+|+ .+++.|-..|++-+.++
T Consensus 1 M~~~VlITGassGIG~-----a~A~~la~~G~~v~l~~ 33 (256)
T PRK07024 1 MPLKVFITGASSGIGQ-----ALAREYARQGATLGLVA 33 (256)
T ss_pred CCCEEEEECCCHHHHH-----HHHHHHHHCCCEEEEEE
T ss_conf 9998999846029999-----99999998899899998
No 360
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=82.89 E-value=0.47 Score=26.00 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=16.8
Q ss_pred EEEEECCCCCCCHHH----HHHHHHHHH
Q ss_conf 299983589874799----999999998
Q gi|254780487|r 4 RLVIVGTDTSVGKTI----FASALVHAL 27 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~----vs~~L~~~l 27 (217)
-+.||| .||||||| ||+-|-++.
T Consensus 86 VviiAG-ETGSGKTTQLPKICLELGrG~ 112 (1320)
T TIGR01967 86 VVIIAG-ETGSGKTTQLPKICLELGRGS 112 (1320)
T ss_pred EEEEEC-CCCCCCCCCCHHHHHHHCCCC
T ss_conf 899972-448762023216777542787
No 361
>pfam01268 FTHFS Formate--tetrahydrofolate ligase.
Probab=82.82 E-value=0.6 Score=25.35 Aligned_cols=33 Identities=30% Similarity=0.255 Sum_probs=25.3
Q ss_pred CEEEEEC---CCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 3299983---58987479999999999840486120
Q gi|254780487|r 3 LRLVIVG---TDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 3 ~~i~I~G---T~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
|-|+||+ |--|-|||++|.||.++|+.-+.|.+
T Consensus 55 klilVTaitPTP~GEGKTTttIGL~~aL~~lgk~~~ 90 (555)
T pfam01268 55 KLILVTAITPTPAGEGKTTTTIGLGQALNRLGKKAI 90 (555)
T ss_pred EEEEEEECCCCCCCCCCCEEHHHHHHHHHHHCCCEE
T ss_conf 399998457888888863023659999986287436
No 362
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=82.71 E-value=1.7 Score=22.54 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=26.7
Q ss_pred CC-CEEEEECCCCCCCHHHHHHHHHHHHHC-CCCCCEE
Q ss_conf 98-329998358987479999999999840-4861201
Q gi|254780487|r 1 MK-LRLVIVGTDTSVGKTIFASALVHALNA-YYWKPIQ 36 (217)
Q Consensus 1 M~-~~i~I~GT~t~vGKT~vs~~L~~~l~~-~~~KPv~ 36 (217)
|+ +.++++|- +|.|||.++.|+++.|-. ..|-|+.
T Consensus 48 ~aGraiLlaGp-pGTGKTAlA~aiakeLG~~vPF~~i~ 84 (395)
T pfam06068 48 IAGRAVLIAGP-PGTGKTALAIAISKELGEDTPFCPIS 84 (395)
T ss_pred CCCCEEEEECC-CCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 57738998779-99888999999999748799734500
No 363
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=82.48 E-value=3.6 Score=20.47 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=47.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCC---CCCCCCCCCHHHHHHHHHH-
Q ss_conf 299983589874799999999998404861201388738068999998557873114---4300145103478899985-
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHII---PEKWKLRTPASPHLAAEID- 79 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~- 79 (217)
.++|.|. .|.|||+.+.-++.+.-..+.|-.--- .+.+-..++.+.....-+... -..+.+. +..|......+
T Consensus 26 ~~li~G~-~GtGKsi~~~~~~~~~l~~g~~~~yis-~e~t~~~~i~qm~s~g~di~~~~~~G~l~~i-~~~~~~~~~~~~ 102 (230)
T PRK08533 26 IILIEGD-ESTGKSILSQRLAYGFLQNGYSVSYVS-SQLTTTEFIKQMMSLGYDINKKLISGKLLYI-PVYPLLSGNSEK 102 (230)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCEEEEEE-ECCCHHHHHHHHHHCCCCCHHHHHCCCEEEE-ECCCCCCCHHHH
T ss_conf 8999868-998789999999999987898699999-4389999999999869981799757967999-613433540457
Q ss_pred HCCCHHH-HHHHHHHCCEEEEECCCCCCCCCCC
Q ss_conf 0235078-8642232887999227655566767
Q gi|254780487|r 80 GVIIDPA-TINPPDINDSIIIEGIGGLLVPLTT 111 (217)
Q Consensus 80 ~~~i~~~-~~~~~~~~D~viIEGagg~~~~~~~ 111 (217)
...+... ......++|+++|.....+......
T Consensus 103 ~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~ 135 (230)
T PRK08533 103 RDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDAS 135 (230)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCC
T ss_conf 899999973266437989999053188516777
No 364
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=82.47 E-value=1.9 Score=22.16 Aligned_cols=50 Identities=22% Similarity=0.213 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 987479999999999840486120138873806899999855787311443001
Q gi|254780487|r 12 TSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWK 65 (217)
Q Consensus 12 t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~ 65 (217)
+|+|||+|...|++.|...|. -|..-.+.+...+...+.+.+..+.-||.
T Consensus 4 sG~GKStvg~~lA~~lg~~fi----dGDdlHp~aNi~KM~~GiPL~DdDR~pWL 53 (161)
T COG3265 4 SGSGKSTVGSALAERLGAKFI----DGDDLHPPANIEKMSAGIPLNDDDRWPWL 53 (161)
T ss_pred CCCCHHHHHHHHHHHCCCCEE----CCCCCCCHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 765777999999998098233----35656998899987279989841124799
No 365
>PRK12377 putative replication protein; Provisional
Probab=82.41 E-value=3.6 Score=20.45 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=49.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 89874799999999998404861201388738068999998557873114430014510347889998502350788642
Q gi|254780487|r 11 DTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDPATINP 90 (217)
Q Consensus 11 ~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 90 (217)
.+|+|||..+++|++.+-..|++-.-. .- +.++..+.. +..++. ....+.+.
T Consensus 109 ~pGtGKTHLA~AIg~~a~~~G~sVlF~---t~--~dLv~~L~~----------------------a~~~g~-~~~k~l~~ 160 (248)
T PRK12377 109 KPGTGKNHLAAAIGNRLLAKGRSVIVV---TV--PDVMSRLHE----------------------SYDNGQ-SGEKFLQE 160 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEE---EH--HHHHHHHHH----------------------HHHCCC-CHHHHHHH
T ss_conf 999878899999999999879969998---89--999999999----------------------998485-09999999
Q ss_pred HHHCCEEEEECCCCCCCCCCCCCCHHHHHH-H-HC-CCEEEEECCCCCHHHHHH
Q ss_conf 232887999227655566767530899999-7-47-944897057765045799
Q gi|254780487|r 91 PDINDSIIIEGIGGLLVPLTTEYLFIDLIE-R-WQ-FPIILCARTSLGTINHSL 141 (217)
Q Consensus 91 ~~~~D~viIEGagg~~~~~~~~~~~~dla~-~-l~-~~vILV~~~~~g~i~~~~ 141 (217)
-...|++||+-.|-...........-++.. . -. -|+|+.++-.-+.....+
T Consensus 161 l~~~dLLIIDElG~~~~s~~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~il 214 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLL 214 (248)
T ss_pred HHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
T ss_conf 733898986000578898679999999999998557986897589977998887
No 366
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.37 E-value=1.6 Score=22.63 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC
Q ss_conf 9832999835898747999999999984048612013
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS 37 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~ 37 (217)
|.|-|+.-|. ||||||-++--|++..+.-|.|-=+|
T Consensus 49 ~PKNILMIGp-TGVGKTEIARRLAkl~~aPFiKVEAT 84 (444)
T COG1220 49 TPKNILMIGP-TGVGKTEIARRLAKLAGAPFIKVEAT 84 (444)
T ss_pred CCCCEEEECC-CCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 7553588888-88768899999999848983788764
No 367
>PRK13975 thymidylate kinase; Provisional
Probab=82.33 E-value=1.6 Score=22.64 Aligned_cols=30 Identities=40% Similarity=0.478 Sum_probs=25.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9832999835898747999999999984048
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
|.|=|-+=|.+ |+|||+.+-.|...|++.+
T Consensus 1 m~kfI~fEGiD-GsGKsTq~~lL~~~L~~~~ 30 (198)
T PRK13975 1 MNKFIVFEGID-GSGKTTQAKLLAEKLNAKF 30 (198)
T ss_pred CCCEEEEECCC-CCCHHHHHHHHHHHCCCCE
T ss_conf 99889998998-8869999999999738748
No 368
>TIGR01069 mutS2 MutS2 family protein; InterPro: IPR005747 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication . MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base . MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch . MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level . Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure , and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions . Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts . This entry represents a family of MutS proteins.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0045005 maintenance of fidelity during DNA-dependent DNA replication.
Probab=82.32 E-value=1.9 Score=22.26 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=23.8
Q ss_pred CEEEEECCCCCCCHHHH--HHHHHHHHHCCCC
Q ss_conf 32999835898747999--9999999840486
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIF--ASALVHALNAYYW 32 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~v--s~~L~~~l~~~~~ 32 (217)
+.+.|||-+|| |||.+ |+||+..+-..+.
T Consensus 342 ~~~~iTGPNtG-GKTVtLKTLGL~~lm~q~gi 372 (834)
T TIGR01069 342 RVLIITGPNTG-GKTVTLKTLGLLALMAQSGI 372 (834)
T ss_pred CEEEEECCCCC-HHHHHHHHHHHHHHHHHCCC
T ss_conf 17888677996-17899999999999987278
No 369
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=82.29 E-value=0.73 Score=24.84 Aligned_cols=33 Identities=21% Similarity=0.078 Sum_probs=25.4
Q ss_pred CEEEEEC---CCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 3299983---58987479999999999840486120
Q gi|254780487|r 3 LRLVIVG---TDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 3 ~~i~I~G---T~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
|-|+||+ |--|-|||++|.||.++|+.-+.|.+
T Consensus 64 klILVTaitPTP~GEGKTTttIGL~~aL~~lgkk~~ 99 (587)
T PRK13507 64 KYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVG 99 (587)
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 399998468888889862105629999986088258
No 370
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=82.15 E-value=1.9 Score=22.25 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=26.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf 29998358987479999999999840486120138873
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYE 41 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~ 41 (217)
-+.-.|- +|||||++.-.+++++.+.|++ ++-|.-+
T Consensus 352 ILcLVGP-PGVGKTSLgkSIA~al~RkfvR-~sLGGvr 387 (782)
T COG0466 352 ILCLVGP-PGVGKTSLGKSIAKALGRKFVR-ISLGGVR 387 (782)
T ss_pred EEEEECC-CCCCCHHHHHHHHHHHCCCEEE-EECCCCC
T ss_conf 7999789-9887011899999995897799-9547654
No 371
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=81.87 E-value=1.4 Score=23.00 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 832999835898747999999999984
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
.+++-|.|- ||+||||...-|.+.+.
T Consensus 387 G~r~Ai~G~-SG~GKsTLL~~L~G~l~ 412 (566)
T TIGR02868 387 GERVAILGP-SGSGKSTLLATLAGLLD 412 (566)
T ss_pred CCCEEEECC-CCCCHHHHHHHHHHHCC
T ss_conf 860898668-87657899999984028
No 372
>pfam04227 Indigoidine_A Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown.
Probab=81.83 E-value=3.8 Score=20.32 Aligned_cols=110 Identities=19% Similarity=0.213 Sum_probs=66.4
Q ss_pred CEEEEECCCCCCCCCCC-CCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC----------
Q ss_conf 87999227655566767-5308999997479448970577650457999999998479907999976977----------
Q gi|254780487|r 95 DSIIIEGIGGLLVPLTT-EYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDS---------- 163 (217)
Q Consensus 95 D~viIEGagg~~~~~~~-~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~---------- 163 (217)
.+-.=-|.||+..+... ..-.+|+...-+.||++|+.. .-+|=+.-.|+|+++..|+++.|+==+..+
T Consensus 112 ~VFaTGGIGGVHrg~~~t~DiSaDL~eL~~tpv~VVcaG-~KsILDi~~TlE~LET~GV~V~gy~td~fPaFy~~~Sg~~ 190 (293)
T pfam04227 112 KVFATGGIGGVHRGAEESFDISADLTELARTPVAVVCAG-AKSILDIPKTLEYLETQGVPVIGYGTDEFPAFYSRDSGFK 190 (293)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEECC-CHHHHCCHHHHHHHHHCCCEEEEECCCCCCCEEECCCCCC
T ss_conf 089746745125786456321434788815975999426-0765054468999997594389745876564230588998
Q ss_pred CC---CHHH----HHH--HHCCCC--EEEE--ECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 80---0599----999--861998--9999--47888888879999999713399
Q gi|254780487|r 164 MP---KVEE----TIV--KIGRIP--HLGR--LPKIDPIDPDVLHQKFQEHFTQS 205 (217)
Q Consensus 164 ~~---~~~~----~le--~~~~ip--vLG~--iP~~~~~~~~~l~~~~~~~~~~~ 205 (217)
.+ +..+ .+. ...+.| +|=+ ||....++.+.+..++++.+.+.
T Consensus 191 ~~~~~~~~~eiA~i~~~~~~lgl~~g~LianPIP~e~~i~~~~ie~~I~~Al~ea 245 (293)
T pfam04227 191 VPYRLDSAEEIAAIIRARWALGLQGGVLVANPIPEEYAIDREEIEAAIEQALAEA 245 (293)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 8661389999999999999718998359966897254499899999999999999
No 373
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=81.76 E-value=3.8 Score=20.30 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=55.5
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 98358987479999999999840486120138873806899999855787311443001451034788999850235078
Q gi|254780487|r 7 IVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDPA 86 (217)
Q Consensus 7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 86 (217)
|.|- -|.|||++-.+--.++...||.-+..- +-..=+.-+..-++... .+ -.| ... .+++ .
T Consensus 367 VvG~-AGtGKStmL~aAReawEa~GyrV~GaA-LsGkAAegLe~~sGI~S-------rT---lAs-~e~-~w~~-----g 427 (992)
T PRK13889 367 VVGY-AGTGKSAMLGVAREAWEAAGYEVRGAA-LSGIAAENLEGGSGIAS-------RT---IAS-LEH-GWGQ-----G 427 (992)
T ss_pred EEEC-CCCCHHHHHHHHHHHHHHCCCEEEEEC-CCHHHHHHHHHCCCCCC-------HH---HHH-HHH-HHHC-----C
T ss_conf 9833-888788999999999997798898115-00689997653479431-------67---999-999-8746-----7
Q ss_pred HHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC-CCCHHHHHH
Q ss_conf 8642232887999227655566767530899999747944897057-765045799
Q gi|254780487|r 87 TINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART-SLGTINHSL 141 (217)
Q Consensus 87 ~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~-~~g~i~~~~ 141 (217)
.. .-...|++||.-+|= ++.-.-.-..+.+...++.||||++. .++.|..--
T Consensus 428 ~~-~L~~~dVlVVDEAGM--VgSRqMarll~~Ae~AGAKVVLVGD~~QLq~IeAGa 480 (992)
T PRK13889 428 RD-LLTARDVLVIDEAGM--VGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEAGA 480 (992)
T ss_pred CC-CCCCCCEEEEECCCC--CCHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCH
T ss_conf 33-478985899967655--774999999999998499899948877718864688
No 374
>PRK06749 replicative DNA helicase; Provisional
Probab=81.64 E-value=3.9 Score=20.27 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=22.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 2999835898747999999999984048
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
.++|.|..+++|||..++.++...-..+
T Consensus 187 ~LiviaaRPsmGKTa~alnia~~~a~~g 214 (428)
T PRK06749 187 DFVVLGARPSMGKTAFALNVGLHAAKSG 214 (428)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 6899962798976899999999999649
No 375
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=81.56 E-value=2.3 Score=21.66 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=19.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
.++++.| |+|||.+++.+++.+...+-|
T Consensus 21 ~~i~~pT--GsGKT~~~~~~i~~~~~~~~~ 48 (103)
T pfam04851 21 GLIVMAT--GSGKTLTAAKLIARLLKGKKK 48 (103)
T ss_pred EEEEECC--CCCHHHHHHHHHHHHHHCCCC
T ss_conf 6999589--998799999999999846992
No 376
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=81.42 E-value=0.81 Score=24.53 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=11.3
Q ss_pred EEEECCCCCCCHHHH
Q ss_conf 999835898747999
Q gi|254780487|r 5 LVIVGTDTSVGKTIF 19 (217)
Q Consensus 5 i~I~GT~t~vGKT~v 19 (217)
++|||- ||||||+.
T Consensus 329 vLVTGP-TGSGKTVS 342 (577)
T TIGR02538 329 VLVTGP-TGSGKTVS 342 (577)
T ss_pred EEEECC-CCCCHHHH
T ss_conf 886266-59841687
No 377
>PRK13764 ATPase; Provisional
Probab=81.28 E-value=2.4 Score=21.53 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=23.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 32999835898747999999999984048
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
..|+|+|. +|+|||+.+.+|+..+...+
T Consensus 260 ~GilIaG~-PGaGKsTfaqalA~~~~~~g 287 (605)
T PRK13764 260 EGILIAGA-PGAGKSTFAQALAEFYADMG 287 (605)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHCC
T ss_conf 64999779-99977899999999998479
No 378
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=81.23 E-value=0.96 Score=24.07 Aligned_cols=117 Identities=14% Similarity=0.083 Sum_probs=54.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 32999835898747999999999984048612013887380689999985578731144300145103478899985023
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVI 82 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (217)
||+++.|- |++|||+. |++|+..+.|-=+|+.-+.. + ....-.|--|.... .
T Consensus 1 Kr~~f~G~-~gCGKTTL----~q~L~g~~~~YKKTQAvE~~-----------~-k~~IDTPGEY~enr-----------~ 52 (144)
T TIGR02528 1 KRIMFIGS-VGCGKTTL----TQALQGEEIKYKKTQAVEYK-----------D-KEAIDTPGEYVENR-----------R 52 (144)
T ss_pred CEEEEEEC-CCCCHHHH----HHHCCCCCCCEEEEEEEEEC-----------C-CCCCCCCCCCCCCC-----------C
T ss_conf 91788715-88874435----43116873210233445425-----------8-88655985001575-----------2
Q ss_pred CHHHHHHHHHHCCE-EEEECCCCCCCCCCCCCCHHHHHHHHCC-CEE-EEECCCCCH-HHHHHHHHHHHHHCCC
Q ss_conf 50788642232887-9992276555667675308999997479-448-970577650-4579999999984799
Q gi|254780487|r 83 IDPATINPPDINDS-IIIEGIGGLLVPLTTEYLFIDLIERWQF-PII-LCARTSLGT-INHSLLSLETLRNRNI 152 (217)
Q Consensus 83 i~~~~~~~~~~~D~-viIEGagg~~~~~~~~~~~~dla~~l~~-~vI-LV~~~~~g~-i~~~~l~~~~~~~~g~ 152 (217)
.-.++.-...+.|+ ++|-++-.-.++ .-.-++....- ||| +|+..++.- -.+.-.+-+.++..|.
T Consensus 53 ~Y~AL~vtaaDAd~i~lV~~a~~~~~~-----f~PgF~~~f~kK~~IG~vTK~DLA~~d~~i~r~~~~L~~AG~ 121 (144)
T TIGR02528 53 YYSALIVTAADADVIALVQSATDEESR-----FSPGFASIFVKKEVIGIVTKIDLAEADKDIERAKRLLETAGA 121 (144)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCC-----CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 378888887210236677357764223-----785000236788634788403788773479999999872365
No 379
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=81.14 E-value=2.7 Score=21.29 Aligned_cols=30 Identities=20% Similarity=0.097 Sum_probs=23.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 3299983589874799999999998404861
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
+.+||.|- +|+|||+..-++++.++..+.+
T Consensus 39 ~~l~i~G~-~GsGKTHLl~a~~~~~~~~~~~ 68 (226)
T TIGR03420 39 RFLYLWGE-SGSGKSHLLQAACAAAEERGKS 68 (226)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHCCCCC
T ss_conf 86999899-9998899999999998626995
No 380
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=80.75 E-value=2.2 Score=21.83 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8329998358987479999999999840
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
+.+++.+|.. |+|||+++..+++++..
T Consensus 36 ~HAYLFsGPr-GvGKTt~ArifAkaLnC 62 (523)
T PRK08451 36 AHAYLFSGLR-GSGKTSSARIFSRALVC 62 (523)
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf 7158757899-86889999999999759
No 381
>PRK08506 replicative DNA helicase; Provisional
Probab=80.67 E-value=4.2 Score=20.06 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 299983589874799999999998
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
-++|.|..+++|||..++.++...
T Consensus 194 dLiIIAARPsmGKTAfAlniA~~~ 217 (473)
T PRK08506 194 DLIIIAARPSMGKTTLVLNMVLKA 217 (473)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 279995079986789999999999
No 382
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=80.63 E-value=2.2 Score=21.86 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=21.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
-++|+|. ||+|||+....+++.++....+
T Consensus 82 lilitGp-tGSGKtTtl~a~l~~~~~~~~~ 110 (264)
T cd01129 82 IILVTGP-TGSGKTTTLYSALSELNTPEKN 110 (264)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHCCCCCE
T ss_conf 8999789-9997799999999864368850
No 383
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=80.36 E-value=2.3 Score=21.75 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8329998358987479999999999840
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
+.+++.+|. .|+|||+++..+++++..
T Consensus 38 aHAYLFsGP-rGvGKTTlArifAkaLnC 64 (613)
T PRK05896 38 THAYIFSGP-RGIGKTSIAKIFAKAINC 64 (613)
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf 622775589-984889999999999669
No 384
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=80.35 E-value=4.3 Score=20.00 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=15.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99983589874799999999998
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
++| |- +|||||.+.=||++.+
T Consensus 198 iLV-Ge-pGVGKTAIvEGLA~rI 218 (852)
T TIGR03346 198 VLI-GE-PGVGKTAIVEGLAQRI 218 (852)
T ss_pred CEE-CC-CCCCHHHHHHHHHHHH
T ss_conf 212-79-9987999999999998
No 385
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=79.96 E-value=1.9 Score=22.23 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 983299983589874799999999
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALV 24 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~ 24 (217)
|.+.|-|||. .++|||+++--|-
T Consensus 1 ~m~~IgiTG~-igsGKStv~~~l~ 23 (199)
T PRK00081 1 MMLIIGLTGG-IGSGKSTVANIFA 23 (199)
T ss_pred CCEEEEEECC-CCCCHHHHHHHHH
T ss_conf 9789995788-8777999999999
No 386
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=79.96 E-value=2.3 Score=21.74 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=49.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCC-----CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9832999835898747999999999984048-----61201388738068999998557873114430014510347889
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYY-----WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLA 75 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~-----~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (217)
|++-+||+|+ +++|||.--+--++-++.++ |||--- .--....+....+...+...+. ... ...
T Consensus 3 ~g~l~~i~gp-M~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD---~R~~~~~V~Sr~G~~~~A~~i~-----~~~--~i~ 71 (201)
T COG1435 3 MGWLEFIYGP-MFSGKTEELLRRARRYKEAGMKVLVFKPAID---TRYGVGKVSSRIGLSSEAVVIP-----SDT--DIF 71 (201)
T ss_pred EEEEEEEECC-CCCCCHHHHHHHHHHHHHCCCEEEEEECCCC---CCCCCCEEEECCCCCCCCEECC-----CHH--HHH
T ss_conf 4789999715-7686359999999999975980899852533---5356433653158766535638-----757--899
Q ss_pred HHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 9985023507886422328879992276555667675308999997479448970
Q gi|254780487|r 76 AEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCA 130 (217)
Q Consensus 76 ~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~ 130 (217)
..+. ........|+++|.-+--+-. ..-....+++..||.|||+-+
T Consensus 72 ~~i~-------~~~~~~~~~~v~IDEaQF~~~--~~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 72 DEIA-------ALHEKPPVDCVLIDEAQFFDE--ELVYVLNELADRLGIPVICYG 117 (201)
T ss_pred HHHH-------HCCCCCCCCEEEEEHHHHCCH--HHHHHHHHHHHHCCCEEEEEC
T ss_conf 9998-------513478757899961671897--899999999861498899954
No 387
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=79.71 E-value=2.6 Score=21.38 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 3299983589874799999999998404
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAY 30 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~ 30 (217)
..+||.|. +|.|||.++--+++.++..
T Consensus 56 ~n~~I~G~-pGTGKT~~vk~v~~~l~~~ 82 (394)
T PRK00411 56 SNVLILGP-PGTGKTTTVKKVFEELEEA 82 (394)
T ss_pred CCEEEECC-CCCCHHHHHHHHHHHHHHH
T ss_conf 84799889-9998999999999999974
No 388
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=79.68 E-value=2.2 Score=21.85 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=21.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 299983589874799999999998404
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAY 30 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~ 30 (217)
.++..|. .|+|||+++..+++.+...
T Consensus 38 hlLf~GP-pG~GKTt~A~~lA~~l~~~ 63 (337)
T PRK12402 38 HLVVYGP-SGSGKTAAVRALARELYGD 63 (337)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHCCC
T ss_conf 6988892-9848999999999996799
No 389
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=79.50 E-value=2.5 Score=21.50 Aligned_cols=28 Identities=29% Similarity=0.390 Sum_probs=24.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 32999835898747999999999984048
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
..|+|+|. +|.|||+.+.+|+.-+...|
T Consensus 264 eGILIAG~-PGaGKsTFaqAlAefy~~~G 291 (604)
T COG1855 264 EGILIAGA-PGAGKSTFAQALAEFYASQG 291 (604)
T ss_pred CCEEEECC-CCCCHHHHHHHHHHHHHHCC
T ss_conf 64699569-99974689999999998669
No 390
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=79.44 E-value=2.2 Score=21.87 Aligned_cols=32 Identities=34% Similarity=0.462 Sum_probs=25.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 983299983589874799999999998404861
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
|.|=|+.-|. ||||||=++-=|++..+.=|.|
T Consensus 46 ~PKNILMiGp-TGVGKTEIARRlAKL~~aPFiK 77 (463)
T TIGR00390 46 TPKNILMIGP-TGVGKTEIARRLAKLANAPFIK 77 (463)
T ss_pred CCCCEEEECC-CCCCHHHHHHHHHHHHCCCCEE
T ss_conf 8743043278-8985447999999984489146
No 391
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=79.43 E-value=4.6 Score=19.81 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=36.3
Q ss_pred HHHHHHCCEEEEECCCCCCCCCCCCCC---HHHHHHHHCCCEEEEECC
Q ss_conf 642232887999227655566767530---899999747944897057
Q gi|254780487|r 88 INPPDINDSIIIEGIGGLLVPLTTEYL---FIDLIERWQFPIILCART 132 (217)
Q Consensus 88 ~~~~~~~D~viIEGagg~~~~~~~~~~---~~dla~~l~~~vILV~~~ 132 (217)
..++.+..++|+.-..|-.+|+..... ..++-+.++.-+|+|+..
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD 195 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD 195 (309)
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 997419886863488554476549999999999999859879999357
No 392
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=79.32 E-value=4.6 Score=19.79 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=23.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC--CC-CEEC
Q ss_conf 2999835898747999999999984048--61-2013
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYY--WK-PIQS 37 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~--~K-Pv~~ 37 (217)
-++.+|. +|+|||++.-.|++-+.... ++ |+..
T Consensus 47 iLlLtGP-aG~GKTTTI~lLAkeLG~ei~EW~NP~~~ 82 (490)
T pfam03215 47 ILLLTGP-SGCGKSTTVKVLSKELGIEIIEWSNPEYL 82 (490)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHCCEEEEECCCCCC
T ss_conf 8998798-99889999999999759689981486545
No 393
>TIGR00150 TIGR00150 conserved hypothetical protein TIGR00150; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements . .
Probab=79.20 E-value=1.9 Score=22.18 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 3299983589874799999999998404
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAY 30 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~ 30 (217)
+.++..-=+-|+|||+.+-|++++|--.
T Consensus 28 ~~v~~L~GDlGaGKTtl~~G~~~~LG~~ 55 (147)
T TIGR00150 28 GTVVLLKGDLGAGKTTLVKGLLQGLGIT 55 (147)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCE
T ss_conf 5389973234666589999999837922
No 394
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=79.09 E-value=2.8 Score=21.14 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=19.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999835898747999999999984
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
++|+|+ ||+|||+.+-.|++.+.
T Consensus 477 ~~I~g~-SGsGKSf~~q~l~~~~~ 499 (864)
T PRK13721 477 MAVCGT-SGAGKTGLIQPLIRSVL 499 (864)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH
T ss_conf 699828-99868999999999998
No 395
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=78.90 E-value=4.8 Score=19.71 Aligned_cols=64 Identities=11% Similarity=0.035 Sum_probs=38.3
Q ss_pred HCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 2887999227655566767530899999747944897057765045799999999847990799997697
Q gi|254780487|r 93 INDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGD 162 (217)
Q Consensus 93 ~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~ 162 (217)
++-+.+|...|..- +......-++..+ -+|||+++..|--.+|.-.+..++..|+++. +.+|+.
T Consensus 64 ~~~~n~IDtPGH~d----F~~~~~~~~~~~D-~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~i-v~iNK~ 127 (194)
T cd01891 64 DTKINIVDTPGHAD----FGGEVERVLSMVD-GVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKI 127 (194)
T ss_pred CEEEEEEECCCCHH----HHHHHHHHHHHCC-EEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECC
T ss_conf 98899998998477----7778987764344-6789865378975899999999987299749-988564
No 396
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane.
Probab=78.87 E-value=3.2 Score=20.77 Aligned_cols=121 Identities=19% Similarity=0.126 Sum_probs=68.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEC-CCCCCCHHH---HHHHHHCCCCCCCCCCCCCCCCCHHHHHHH-H
Q ss_conf 32999835898747999999999984048612013-887380689---999985578731144300145103478899-9
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQS-GMYEETDSK---TIHRIGRIPKSHIIPEKWKLRTPASPHLAA-E 77 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~-G~~~~~D~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 77 (217)
+++=+.| .||+||++.-.+|+|.++..|- |+- | ..=|.. .=+++++.-+-...+..-+|+....||... .
T Consensus 1287 Q~VGlLG-RTGsGKSTLLSAlLRL~~T~GE--I~IDG--vSW~SvtLQ~WRKAFGViPQKvFi~sGTFR~NLDPy~~~SD 1361 (1534)
T TIGR01271 1287 QRVGLLG-RTGSGKSTLLSALLRLLSTEGE--IQIDG--VSWNSVTLQKWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSD 1361 (1534)
T ss_pred CEEEEEE-CCCCCHHHHHHHHHHHCCCCCC--EEECC--EEECCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCCH
T ss_conf 3577530-2687678999999996077981--67623--35052122003444131563478831551136881342260
Q ss_pred HHHCCCHHH------HHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH--HCCCEEEEEC
Q ss_conf 850235078------86422328879992276555667675308999997--4794489705
Q gi|254780487|r 78 IDGVIIDPA------TINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIER--WQFPIILCAR 131 (217)
Q Consensus 78 ~~~~~i~~~------~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~--l~~~vILV~~ 131 (217)
.|-.++... ...-+.+-|++|++|-- +-...-.-..=+||. =+|.++|.--
T Consensus 1362 ~E~WkVaeEVGLkSvIEQFPdKLdF~L~DGGy---vLS~GHKQLMCLARSiLSKAkILLLDE 1420 (1534)
T TIGR01271 1362 EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGY---VLSNGHKQLMCLARSILSKAKILLLDE 1420 (1534)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCEEEECCCE---EEECCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 35666654315431100088841248862867---831641689999988886533222148
No 397
>PRK10263 DNA translocase FtsK; Provisional
Probab=78.84 E-value=1.9 Score=22.22 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=17.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 29998358987479999999999
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHA 26 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~ 26 (217)
.++|+|| ||+||+...-.++-.
T Consensus 1012 HLLIAGt-TGSGKSV~iNsmI~S 1033 (1355)
T PRK10263 1012 HLLVAGT-TGSGKSVGVNAMILS 1033 (1355)
T ss_pred CEEEECC-CCCCCHHHHHHHHHH
T ss_conf 1134046-788830439999999
No 398
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=78.73 E-value=4.8 Score=19.68 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 32999835898747999999999984
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
..+.|.|. +|+|||+..-.|+.-++
T Consensus 29 e~~aivG~-sGsGKSTLl~~l~G~~~ 53 (178)
T cd03247 29 EKIALLGR-SGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CEEEEECC-CCCHHHHHHHHHHHCCC
T ss_conf 99999999-98759999999986176
No 399
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=78.72 E-value=1.3 Score=23.28 Aligned_cols=134 Identities=16% Similarity=0.239 Sum_probs=59.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCC--EECCCCCCCHHHHHHHHHCCCCCCC---CCCCCCCCCCHHH-----------
Q ss_conf 35898747999999999984048612--0138873806899999855787311---4430014510347-----------
Q gi|254780487|r 9 GTDTSVGKTIFASALVHALNAYYWKP--IQSGMYEETDSKTIHRIGRIPKSHI---IPEKWKLRTPASP----------- 72 (217)
Q Consensus 9 GT~t~vGKT~vs~~L~~~l~~~~~KP--v~~G~~~~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------- 72 (217)
|. ||+|||++.+-+++.++ || |-+- ...==+++....-..=+..+ .++.|-|-+|-+.
T Consensus 36 Gv-TGsGKTFT~AnVIa~~~----rPTLV~aH-NKTLAAQLY~EfKefFPeNAVEYFvSYYDYYQPEAYvP~~DtyIEKd 109 (667)
T TIGR00631 36 GV-TGSGKTFTMANVIAQVQ----RPTLVLAH-NKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKD 109 (667)
T ss_pred EE-ECCCHHHHHHHHHHHHC----CCEEEECC-CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEECC
T ss_conf 32-14862788989999847----98499857-77679999999986386772452552032378732147988413045
Q ss_pred -HHHHHHHHCCCHHHHHHHHHHCCEEEEECCC---CCCCCCCCCCCHHHHHHHHCCCEEEEECC--CCCHHHHHHHHHHH
Q ss_conf -8899985023507886422328879992276---55566767530899999747944897057--76504579999999
Q gi|254780487|r 73 -HLAAEIDGVIIDPATINPPDINDSIIIEGIG---GLLVPLTTEYLFIDLIERWQFPIILCART--SLGTINHSLLSLET 146 (217)
Q Consensus 73 -~~~~~~~~~~i~~~~~~~~~~~D~viIEGag---g~~~~~~~~~~~~dla~~l~~~vILV~~~--~~g~i~~~~l~~~~ 146 (217)
-...++|.-.+ .+...+.+..|++||=.+. |+.+|...... -+-|.++. ....+-.-+..++|
T Consensus 110 aSINdeIerlR~-SAT~SLl~RrDVIVVASVScIYGLG~P~~Y~~~----------~~~l~vG~~~~~~~ll~~LV~lqY 178 (667)
T TIGR00631 110 ASINDEIERLRL-SATKSLLERRDVIVVASVSCIYGLGSPEEYLKM----------VLHLEVGKEIDRRELLRRLVELQY 178 (667)
T ss_pred CCHHHHHHHHHH-HHHHHHCCCCCEEEEEEEEEECCCCCCHHHHCC----------EEEEEECCCCCHHHHHHHHHHHCE
T ss_conf 530046767788-988864237878999875520688882556422----------786540785588999988634030
Q ss_pred HHHC-----C-CEEEEEEE
Q ss_conf 9847-----9-90799997
Q gi|254780487|r 147 LRNR-----N-INIIGIAF 159 (217)
Q Consensus 147 ~~~~-----g-~~i~GiIl 159 (217)
-+++ | =++.|=|+
T Consensus 179 ~RNd~~f~RG~FRvrGDVv 197 (667)
T TIGR00631 179 ERNDVDFQRGTFRVRGDVV 197 (667)
T ss_pred EECCEECCCCCEEEEEEEE
T ss_conf 5712340577125763189
No 400
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=78.69 E-value=2.3 Score=21.76 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=10.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHH
Q ss_conf 2999835898747999999999
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVH 25 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~ 25 (217)
.||| |- +|||||.++=||++
T Consensus 232 Pl~V-GE-PGVGKTAI~EGLA~ 251 (774)
T TIGR02639 232 PLLV-GE-PGVGKTAIVEGLAQ 251 (774)
T ss_pred CCEE-CC-CCCCHHHHHHHHHH
T ss_conf 7204-48-88644899999999
No 401
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=78.65 E-value=4.9 Score=19.66 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=12.7
Q ss_pred EEECCCCCCCHHHHHHHHHHHH
Q ss_conf 9983589874799999999998
Q gi|254780487|r 6 VIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 6 ~I~GT~t~vGKT~vs~~L~~~l 27 (217)
=++-+.+|.|-|-...|++.++
T Consensus 77 gv~~~t~GpG~~Na~~gi~~A~ 98 (588)
T CHL00099 77 GVCFATSGPGATNLVTGIATAQ 98 (588)
T ss_pred EEEEECCCHHHHHHHHHHHHHH
T ss_conf 8999803778999999999999
No 402
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.62 E-value=2.8 Score=21.12 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=20.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
-++|||. ||+|||+.--.++..++....|
T Consensus 260 liLvTGP-TGSGKTTTLY~~L~~ln~~~~n 288 (500)
T COG2804 260 LILVTGP-TGSGKTTTLYAALSELNTPERN 288 (500)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHCCCCCE
T ss_conf 8999689-9998899999999986278850
No 403
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=78.58 E-value=2.7 Score=21.24 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 987479999999999
Q gi|254780487|r 12 TSVGKTIFASALVHA 26 (217)
Q Consensus 12 t~vGKT~vs~~L~~~ 26 (217)
+|||||.+.=||++.
T Consensus 217 pGVGKTAIvEGLA~r 231 (852)
T TIGR03345 217 AGVGKTAVVEGLALR 231 (852)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 998799999999999
No 404
>PRK00698 tmk thymidylate kinase; Validated
Probab=78.54 E-value=4.9 Score=19.65 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=34.2
Q ss_pred CCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCH-HHHHHHHH
Q ss_conf 983-29998358987479999999999840486120138873806-89999985
Q gi|254780487|r 1 MKL-RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETD-SKTIHRIG 52 (217)
Q Consensus 1 M~~-~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D-~~~~~~~~ 52 (217)
|+- =|.|-|.+ |+|||+.+-.|.+.|+..+++-+.+..|.++. ...+++..
T Consensus 1 mkG~fIviEGiD-GsGKsTq~~~L~~~L~~~g~~v~~t~eP~~t~~g~~ir~~~ 53 (204)
T PRK00698 1 MRGMFITIEGID-GAGKSTQIELLAERLEEQGRDVVFTREPGGTPLGEKLRELL 53 (204)
T ss_pred CCCEEEEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 983199998899-99899999999999996799789986999980699999998
No 405
>PRK08263 short chain dehydrogenase; Provisional
Probab=78.38 E-value=0.89 Score=24.30 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 98329998358987479999999999840486120138
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG 38 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G 38 (217)
|+|.+||||.++|+|+.++ +.|-..|.+-+.++
T Consensus 2 ~gKv~lITGassGIG~a~A-----~~la~~G~~Vv~~~ 34 (275)
T PRK08263 2 MGKVWFITGASRGFGREWT-----EAALERGDRVVATA 34 (275)
T ss_pred CCCEEEEECCCHHHHHHHH-----HHHHHCCCEEEEEE
T ss_conf 8998999467439999999-----99998799899997
No 406
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=78.32 E-value=2.2 Score=21.81 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=19.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 2999835898747999999999984
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
.++|+|+ |++|||..--.|+..+-
T Consensus 40 H~Lv~G~-tGsGKS~~l~~li~sl~ 63 (202)
T pfam01580 40 HLLIAGA-TGSGKSTFLNTLILSLA 63 (202)
T ss_pred CEEEECC-CCCCCCHHHHHHHHHHH
T ss_conf 6899658-99980099999999998
No 407
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=78.31 E-value=5 Score=19.60 Aligned_cols=62 Identities=16% Similarity=0.083 Sum_probs=38.8
Q ss_pred HCCEEEEECCCCCCCCCCCCCCHHHHHHHH-CC-CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 288799922765556676753089999974-79-44897057765045799999999847990799997697
Q gi|254780487|r 93 INDSIIIEGIGGLLVPLTTEYLFIDLIERW-QF-PIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGD 162 (217)
Q Consensus 93 ~~D~viIEGagg~~~~~~~~~~~~dla~~l-~~-~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~ 162 (217)
++-+.+|...|.. + ...+..+.+ .+ -+|||+++..|--.++.-.++.++..++++ -+++|+.
T Consensus 61 ~~~i~~iDTPGh~------~-f~~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~-iv~iNKi 124 (189)
T cd00881 61 DRRVNFIDTPGHE------D-FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPI-IVAINKI 124 (189)
T ss_pred CEEEEEEECCCCH------H-HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECC
T ss_conf 9899999699818------8-9999999986468569999879899878999999999769987-9999897
No 408
>PRK00049 elongation factor Tu; Reviewed
Probab=78.30 E-value=5 Score=19.60 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=61.1
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCC-CCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 983589874799999999998404-8612013887380689999985578731144300145103478899985023507
Q gi|254780487|r 7 IVGTDTSVGKTIFASALVHALNAY-YWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIIDP 85 (217)
Q Consensus 7 I~GT~t~vGKT~vs~~L~~~l~~~-~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 85 (217)
++--|-|.|||+.+-.|...+... +..-... .... ..+...+..+.+++.
T Consensus 16 ~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~--~~~~---------------------------D~~~eEr~rGiTid~ 66 (397)
T PRK00049 16 GTIGHVDHGKTTLTAAITKVLAKKYGGAEAKA--YDQI---------------------------DNAPEEKARGITINT 66 (397)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCHHH--HHHC---------------------------CCCHHHHHCCCEEEE
T ss_conf 99912588899999999866665438531001--3330---------------------------257667625816998
Q ss_pred HHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 88642-23288799922765556676753089999974794-489705776504579999999984799079999769
Q gi|254780487|r 86 ATINP-PDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFP-IILCARTSLGTINHSLLSLETLRNRNINIIGIAFIG 161 (217)
Q Consensus 86 ~~~~~-~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~-vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~ 161 (217)
.+... .++..+.+|.-.|. .++.--=++...+++ ++||+++..|...++.--+..++..|++..-|.+|+
T Consensus 67 ~~~~~~t~~~~~~~iD~PGH------~~fiknmI~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~LGv~~~iV~vnK 138 (397)
T PRK00049 67 AHVEYETEKRHYAHVDCPGH------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNK 138 (397)
T ss_pred EEEEEECCCCEEEEECCCCH------HHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 79999728814999517863------8889998730121567999997488866528999999998099827999986
No 409
>PRK10436 hypothetical protein; Provisional
Probab=78.14 E-value=3.5 Score=20.56 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=22.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
-++|+|. ||+|||+.--++++.++....+
T Consensus 217 liLvtGP-TGSGKTTTLya~L~~l~~~~~~ 245 (461)
T PRK10436 217 LVLVTGP-TGSGKTVTLYSALQTLNTAQIN 245 (461)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHCCCCCE
T ss_conf 7999789-9995699999999743467716
No 410
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=78.11 E-value=1.7 Score=22.52 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=15.2
Q ss_pred HHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf 8642232887999227655566767530899999747944897057
Q gi|254780487|r 87 TINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCART 132 (217)
Q Consensus 87 ~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~ 132 (217)
|.++.+....++|=|||-+.. -+|=+...|++..=|+.|.
T Consensus 174 fF~LEElP~~~v~vGAGYIAv------ELAGvLh~LG~~T~L~~R~ 213 (475)
T TIGR01421 174 FFALEELPKRVVIVGAGYIAV------ELAGVLHGLGSKTHLVIRH 213 (475)
T ss_pred EEHHHCCCCEEEEEECCHHHH------HHHHHHHHCCCCEEEEEEC
T ss_conf 002201787179990738988------8888873126402257736
No 411
>PRK08266 hypothetical protein; Provisional
Probab=78.08 E-value=5.1 Score=19.56 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 79448970577650457999999998479907999976977800
Q gi|254780487|r 123 QFPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSMPK 166 (217)
Q Consensus 123 ~~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~~~ 166 (217)
+-+|+.+++ .|+.......+..+.+.++++.-||+|+...-.
T Consensus 417 ~~~Vv~i~G--DG~f~~~~~eL~Ta~r~~lpi~ivV~NN~~yg~ 458 (531)
T PRK08266 417 DKAVVSITG--DGGFMFGVQELATAVQHNIGVVTLVFNNSAYGN 458 (531)
T ss_pred CCCEEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf 996899984--368734199999999978691899996883268
No 412
>PRK08903 hypothetical protein; Validated
Probab=78.05 E-value=3.5 Score=20.54 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=22.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
-+||.|- +|+|||...-++|+.....+.+
T Consensus 44 ~l~i~G~-~G~GKTHLl~a~~~~~~~~~~~ 72 (227)
T PRK08903 44 FFYLWGE-AGSGRSHLLQALVAAASEGGKN 72 (227)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCC
T ss_conf 6999899-9998889999999999806997
No 413
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=78.01 E-value=2.5 Score=21.47 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=22.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9998358987479999999999840486
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
||..|- +|+|||++.-.|++.++..++
T Consensus 2 I~LiG~-~G~GKstigk~la~~l~~~fi 28 (154)
T cd00464 2 IVLIGM-MGAGKTTVGRLLAKALGLPFV 28 (154)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHCCCEE
T ss_conf 899889-999889999999999798979
No 414
>PRK13948 shikimate kinase; Provisional
Probab=77.97 E-value=2.7 Score=21.26 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=23.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 29998358987479999999999840486
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
.|+..|- +|+|||+|.-.|++.+...++
T Consensus 12 ~IvLIG~-mGsGKStiGk~LA~~l~~~fi 39 (182)
T PRK13948 12 FVALAGF-MGTGKSRIGWELSRALALHFV 39 (182)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHCCCEE
T ss_conf 1898899-999889999999999695988
No 415
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=77.89 E-value=5.1 Score=19.52 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 98329998358987479999999999840486120138
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG 38 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G 38 (217)
|.|..+|||.+.|+|+.+ ++.|-..|++-+.+.
T Consensus 1 M~KvalITGas~GIG~a~-----a~~la~~G~~Vv~~~ 33 (245)
T PRK12824 1 MKKIALVTGAKRGIGSAI-----ARELLADGYRVIATY 33 (245)
T ss_pred CCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEE
T ss_conf 985999947888899999-----999998799899995
No 416
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.58 E-value=5.2 Score=19.47 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 32999835898747999999999984
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
+.+-|.|. +|+|||+..-.|++.++
T Consensus 29 e~i~ivG~-sGsGKSTLl~ll~gl~~ 53 (171)
T cd03228 29 EKVAIVGP-SGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CEEEEECC-CCCHHHHHHHHHHCCCC
T ss_conf 89999999-99839999999976775
No 417
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=77.21 E-value=5.3 Score=19.40 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=18.2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9998358987479999999999840
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
.-|+|- +++|||.+++-|+...+.
T Consensus 22 tEi~G~-~gsGKT~l~lqla~~~q~ 45 (226)
T cd01393 22 TEIFGE-FGSGKTQLCLQLAVEAQL 45 (226)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHC
T ss_conf 999999-999899999999999854
No 418
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=77.16 E-value=4 Score=20.22 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 3299983589874799999999998404861
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
..++|+|. +|+|||+.++-++...-..+-|
T Consensus 33 ~~~li~G~-~G~GKt~~~~~f~~~~~~~g~~ 62 (241)
T PRK06067 33 SLILIEGE-NDTGKSVLSQQFVWGALNQGKR 62 (241)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHHCCCE
T ss_conf 08999807-9988799999999999867982
No 419
>TIGR01826 CofD_related conserved hypothetical protein; InterPro: IPR010119 This entry represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (IPR010115 from INTERPRO), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis..
Probab=77.15 E-value=2.6 Score=21.34 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=47.4
Q ss_pred HHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH---CCCEEEEECCC--CC-HHHHHH-HHHHHHHHC-CCEEEE-EEEC
Q ss_conf 223288799922765556676753089999974---79448970577--65-045799-999999847-990799-9976
Q gi|254780487|r 90 PPDINDSIIIEGIGGLLVPLTTEYLFIDLIERW---QFPIILCARTS--LG-TINHSL-LSLETLRNR-NINIIG-IAFI 160 (217)
Q Consensus 90 ~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l---~~~vILV~~~~--~g-~i~~~~-l~~~~~~~~-g~~i~G-iIlN 160 (217)
.-+++|.+| =|.|++|+.+.-.++.-++++++ .||++.|++.- .| +.+-++ --++.+.++ |.+..= ||+|
T Consensus 187 aI~eADlIi-lGPGSLyTSI~PnLLvp~i~~A~~~s~A~kvYV~NlmtqpGET~~~~~~dHv~~l~~h~G~~~iD~Vlvn 265 (331)
T TIGR01826 187 AIREADLII-LGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNLMTQPGETDGFSVEDHVKALHRHLGKPFIDVVLVN 265 (331)
T ss_pred HHHHCCEEE-ECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 996669278-7772457774243216789999972899899973356688866477289999999986689834478717
No 420
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=77.14 E-value=5.4 Score=19.39 Aligned_cols=113 Identities=11% Similarity=0.052 Sum_probs=53.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCC-CCCCHHHHHHHHHCCCC--CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 83299983589874799999999998404861201388-73806899999855787--3114430014510347889998
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGM-YEETDSKTIHRIGRIPK--SHIIPEKWKLRTPASPHLAAEI 78 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~-~~~~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
.+++.|.|- .++|||++..-+++..+..... |-.+. .+..+...+.+...... ....+-.-....+...+..+..
T Consensus 15 GQr~~I~g~-~g~GKt~l~~~i~~~~~~~~~~-V~~~iGer~~ev~~~~~~~~~~~~~~~t~vv~~~~d~~~~~r~~~~~ 92 (213)
T pfam00006 15 GQRIGIFGG-SGTGKTVLLGMIARNAKADVVE-VYVLIGERGREVAEFIEELLGEGALKRTVVVAATSDEPPAERYLAPY 92 (213)
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHHHCCCE-EEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 888778789-9998899999999856618935-99813777799999999752137665069998468898789999999
Q ss_pred HHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 5023507886422328879992276555667675308999997479448970
Q gi|254780487|r 79 DGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCA 130 (217)
Q Consensus 79 ~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~ 130 (217)
....+.+ +.+ .++.|++++ -.+..++|+.++-=..+..
T Consensus 93 ~a~~~AE-yf~-~~G~dVlvi------------~Dsltr~A~A~reis~~~g 130 (213)
T pfam00006 93 TALTIAE-YFR-DQGKDVLLL------------LDSLTRFARALREISLLLG 130 (213)
T ss_pred HHHHHHH-HHH-HCCCCEEEE------------CCCHHHHHHHHHHHCCCCC
T ss_conf 9999999-999-769968998------------3780599999876500147
No 421
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=77.07 E-value=5.4 Score=19.38 Aligned_cols=29 Identities=31% Similarity=0.335 Sum_probs=23.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
+|+|+|-+|| |--+=+++|++.|+..+++
T Consensus 1 ki~i~~GGTG-GHi~Palala~~L~~~g~~ 29 (350)
T cd03785 1 RILIAGGGTG-GHIFPALALAEELRERGAE 29 (350)
T ss_pred CEEEEECCCH-HHHHHHHHHHHHHHHCCCE
T ss_conf 9899947858-9999999999999978798
No 422
>PRK00625 shikimate kinase; Provisional
Probab=76.89 E-value=3.1 Score=20.89 Aligned_cols=40 Identities=28% Similarity=0.512 Sum_probs=28.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHH
Q ss_conf 32999835898747999999999984048612013887380689999985
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIG 52 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~ 52 (217)
+.||..|- +|+|||++.-.|++.++..++ |.|..+.++..
T Consensus 1 MnI~LIG~-mGsGKStiGk~LA~~l~~~Fv---------D~D~~Ie~~~~ 40 (173)
T PRK00625 1 MQIFLCGL-PTVGKTSFGKALAKFLSLPFF---------DTDDLIVSNYH 40 (173)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHCCCEE---------ECHHHHHHHHC
T ss_conf 92999899-999889999999999399957---------74999999868
No 423
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=76.85 E-value=2.6 Score=21.38 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 998358987479999999999840486
Q gi|254780487|r 6 VIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 6 ~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
++.|. +|+|||+++-++++.++..++
T Consensus 2 Ll~Gp-pGtGKT~~a~~la~~~~~~~~ 27 (131)
T pfam00004 2 LLYGP-PGTGKTTLAKAVAKELGAPFI 27 (131)
T ss_pred EEECC-CCCCHHHHHHHHHHHHCCCCE
T ss_conf 87899-999999999999999789853
No 424
>KOG0460 consensus
Probab=76.50 E-value=3.9 Score=20.25 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=15.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCC
Q ss_conf 898747999999999984048
Q gi|254780487|r 11 DTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 11 ~t~vGKT~vs~~L~~~l~~~~ 31 (217)
+-|-|||+.|+++-+.+...+
T Consensus 62 HVDHGKTTLTaAITkila~~g 82 (449)
T KOG0460 62 HVDHGKTTLTAAITKILAEKG 82 (449)
T ss_pred CCCCCCHHHHHHHHHHHHHCC
T ss_conf 335772008999999997516
No 425
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=76.44 E-value=3.7 Score=20.38 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 832999835898747999999999984048
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
.|++.|.|+. ..|||+.+-.|++.++..+
T Consensus 231 vKkVvIlG~E-STGKTTL~~~LA~~ynT~~ 259 (411)
T PRK08099 231 VRTVAILGGE-SSGKSTLVNKLANIFNTTS 259 (411)
T ss_pred CEEEEEECCC-CCCHHHHHHHHHHHHCCCC
T ss_conf 3689998999-8888999999999978995
No 426
>PRK10865 protein disaggregation chaperone; Provisional
Probab=76.41 E-value=3.4 Score=20.62 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=15.7
Q ss_pred EECCCCCCCHHHHHHHHHHHH
Q ss_conf 983589874799999999998
Q gi|254780487|r 7 IVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 7 I~GT~t~vGKT~vs~~L~~~l 27 (217)
..|- +|||||.+.=||++.+
T Consensus 204 LvGe-pGVGKTAIvEGLA~rI 223 (857)
T PRK10865 204 LIGE-PGVGKTAIVEGLAQRI 223 (857)
T ss_pred EECC-CCCCHHHHHHHHHHHH
T ss_conf 8789-9988999999999999
No 427
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=76.33 E-value=1.7 Score=22.58 Aligned_cols=182 Identities=20% Similarity=0.239 Sum_probs=74.8
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE---------CCCCCCCHHHHHHHHHCCCCCCCCCCC---CCCCCCHHH
Q ss_conf 99983589874799999999998404861201---------388738068999998557873114430---014510347
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQ---------SGMYEETDSKTIHRIGRIPKSHIIPEK---WKLRTPASP 72 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~---------~G~~~~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 72 (217)
|.-.|- ||||||..+--|+|.|++ ||+ +| ...+|+..+..-+-..+++..-.. ..|--. ..
T Consensus 155 ILLiGP-TGSGKTLLAqTLA~~L~V----PfAiADATtLTEAG-YVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDE-ID 227 (452)
T TIGR00382 155 ILLIGP-TGSGKTLLAQTLARILNV----PFAIADATTLTEAG-YVGEDVENILLKLLQAADYDVEKAQKGIIYIDE-ID 227 (452)
T ss_pred EEEECC-CCCCHHHHHHHHHHHCCC----CEEECCHHHHHCCC-CCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEEC-CC
T ss_conf 245468-885268999999987388----74211111020066-424228899999987414552452785089842-23
Q ss_pred HHHHHHHHCCCHHHHH-HHHHHCCEEEEECCCCCCCCCCCCC--CHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 8899985023507886-4223288799922765556676753--089999974794489705776504579999999984
Q gi|254780487|r 73 HLAAEIDGVIIDPATI-NPPDINDSIIIEGIGGLLVPLTTEY--LFIDLIERWQFPIILCARTSLGTINHSLLSLETLRN 149 (217)
Q Consensus 73 ~~~~~~~~~~i~~~~~-~~~~~~D~viIEGagg~~~~~~~~~--~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~ 149 (217)
-.+.+-|+..|..+.. .--+++=.=||||+--- +|+-.++ -.-|+...=-..++.+++..=.++...+- ++
T Consensus 228 KIaRkSEN~SITRDVSGEGVQQALLKi~EGTvA~-vPPqGGRKHP~~~~iqiDTs~ILFICGGAF~GL~~iI~-----~R 301 (452)
T TIGR00382 228 KIARKSENPSITRDVSGEGVQQALLKIIEGTVAN-VPPQGGRKHPQQEFIQIDTSNILFICGGAFVGLEKIIK-----KR 301 (452)
T ss_pred CHHHHCCCCEEEEEECCCHHHHHHHHHHHCCEEE-ECCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHHH-----HH
T ss_conf 1012157780112217554999999876032343-17544886886576886476400110543444899998-----87
Q ss_pred CCCEE-EEEEECCCCCCCH---HHHHHH-----HC--C-CC-EEEEECC---CCCCCHHHHHHHHH
Q ss_conf 79907-9999769778005---999998-----61--9-98-9999478---88888879999999
Q gi|254780487|r 150 RNINI-IGIAFIGDSMPKV---EETIVK-----IG--R-IP-HLGRLPK---IDPIDPDVLHQKFQ 199 (217)
Q Consensus 150 ~g~~i-~GiIlN~~~~~~~---~~~le~-----~~--~-ip-vLG~iP~---~~~~~~~~l~~~~~ 199 (217)
-+-+. .|+--........ .+.+.. +. | || ..|.||- ++.++.|.+-+++.
T Consensus 302 ~~~~~~iGF~~~~~~~~~~~~~~~~L~~v~~~DL~kFGLIPEfIGRLPV~a~L~~L~~eAL~~IL~ 367 (452)
T TIGR00382 302 TEKKSSIGFGAEVKKKSKEKSEEELLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILT 367 (452)
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHH
T ss_conf 455533354552100457878999997517111221055510110534020278788789999852
No 428
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=76.28 E-value=5.7 Score=19.25 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=54.2
Q ss_pred EEEEECCCCCCCHHHHHHHHH-HHH----HCC---CCCCEECCCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCCH-HHH
Q ss_conf 299983589874799999999-998----404---8612013887380689999985578731144-300145103-478
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALV-HAL----NAY---YWKPIQSGMYEETDSKTIHRIGRIPKSHIIP-EKWKLRTPA-SPH 73 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~-~~l----~~~---~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 73 (217)
.+...=|+.|=|||+.++|++ |++ |+. ++| |.....+...+ .......... .++.+.... ..+
T Consensus 23 Gli~VytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlK----g~~~~GE~~~l---~~~~i~~~~~g~g~~~~~~~~e~d 95 (190)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIK----GAWSTGERNLL---EGPGVEFHVMGTGFTWETQDRERD 95 (190)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEC----CCCCHHHHHHH---CCCCCEEEECCCCCCCCCCCCHHH
T ss_conf 67999806998718899999999836998899999944----88545778874---379828998789985778971899
Q ss_pred HHHHHHHCCCHHHHHH-HHHHCCEEEEECCCCCC-CCCCCCCCHHHHHHH--HCCCEEEEECCCCC
Q ss_conf 8999850235078864-22328879992276555-667675308999997--47944897057765
Q gi|254780487|r 74 LAAEIDGVIIDPATIN-PPDINDSIIIEGIGGLL-VPLTTEYLFIDLIER--WQFPIILCARTSLG 135 (217)
Q Consensus 74 ~~~~~~~~~i~~~~~~-~~~~~D~viIEGagg~~-~~~~~~~~~~dla~~--l~~~vILV~~~~~g 135 (217)
.....+. ...+... .+..+|++|.+-..... .+........++.+. -+..|||-++.-..
T Consensus 96 ~~~a~~~--~~~a~~~l~~~~~dlvVLDEi~~Al~~gll~~eevi~~L~~rp~~~evVLTGR~~p~ 159 (190)
T PRK05986 96 IAAAREG--WEEAKRMLADESYDLVVLDELTYALKYGYLDLEEVLEALNNRPGMQHVVITGRGAPR 159 (190)
T ss_pred HHHHHHH--HHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 9999999--999999985888888953767999855995899999999828998769997999999
No 429
>PRK04132 replication factor C small subunit; Provisional
Probab=76.24 E-value=2.3 Score=21.72 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=19.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 299983589874799999999998
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
.++-+|. +|||||+.+++|+|.|
T Consensus 48 HLLFaGP-PGvGKt~~al~lar~l 70 (863)
T PRK04132 48 HLLFAGP-PGVGKTTAALALAREL 70 (863)
T ss_pred CEEECCC-CCCCCHHHHHHHHHHH
T ss_conf 4430489-9877144788888876
No 430
>COG3911 Predicted ATPase [General function prediction only]
Probab=76.17 E-value=2.8 Score=21.13 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=17.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
++||..-++|.|||+.-. +|..+||-
T Consensus 10 ~~fIltGgpGaGKTtLL~----aLa~~Gfa 35 (183)
T COG3911 10 KRFILTGGPGAGKTTLLA----ALARAGFA 35 (183)
T ss_pred EEEEEECCCCCCHHHHHH----HHHHCCCE
T ss_conf 389983799976899999----99975863
No 431
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=76.11 E-value=3.7 Score=20.40 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 98329998358987479999999999840
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
|..+++++|. .|+|||+++..+++.+-.
T Consensus 38 l~HA~Lf~Gp-~GiGK~tlA~~~A~~ll~ 65 (363)
T PRK07471 38 LHHAWLIGGP-QGIGKATLAYRMARFLLA 65 (363)
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHHHC
T ss_conf 7645876799-981889999999999857
No 432
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=76.08 E-value=3.6 Score=20.52 Aligned_cols=14 Identities=43% Similarity=0.577 Sum_probs=6.8
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 98747999999999
Q gi|254780487|r 12 TSVGKTIFASALVH 25 (217)
Q Consensus 12 t~vGKT~vs~~L~~ 25 (217)
+|||||.+.=||++
T Consensus 216 pGVGKTAIvEGLA~ 229 (758)
T PRK11034 216 SGVGKTAIAEGLAW 229 (758)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 99869999999999
No 433
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=76.06 E-value=3.2 Score=20.77 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8329998358987479999999999840
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
+-+++.+|.. |+|||+++..++++++.
T Consensus 38 ~HAyLF~Gpr-GtGKts~Ari~AkaLnC 64 (563)
T PRK06674 38 SHAYLFSGPR-GTGKTSIAKVFAKAVNC 64 (563)
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf 5034312899-86899999999998579
No 434
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=76.02 E-value=5.3 Score=19.42 Aligned_cols=61 Identities=7% Similarity=0.010 Sum_probs=38.4
Q ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHCC--CEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 8879992276555667675308999997479--44897057765045799999999847990799997697
Q gi|254780487|r 94 NDSIIIEGIGGLLVPLTTEYLFIDLIERWQF--PIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGD 162 (217)
Q Consensus 94 ~D~viIEGagg~~~~~~~~~~~~dla~~l~~--~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~ 162 (217)
+-+-+|...|.. ....++.+.+.+ -++||+++-.|.-.++...+..+.+.++++ -+++|+.
T Consensus 73 ~~inlIDTPGH~-------dF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~l~~-il~iNKi 135 (222)
T cd01885 73 YLINLIDSPGHV-------DFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKP-VLVINKI 135 (222)
T ss_pred EEEEEEECCCHH-------HHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCE-EEEEECC
T ss_conf 389997288569-------89999999998568179961045785778999999999859997-9999890
No 435
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=75.87 E-value=5.8 Score=19.18 Aligned_cols=144 Identities=15% Similarity=0.192 Sum_probs=77.4
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE-ECCC-------CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 8329998358987479999999999840486120-1388-------7380689999985578731144300145103478
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPI-QSGM-------YEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPH 73 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv-~~G~-------~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (217)
-.++-|.|- ||+||||.+=.| |++|.|= ++|. ..+-|-..+++.... -.=.|+.|....-..
T Consensus 500 n~k~tiVGm-SGSGKsTLaKLL-----V~FfePQ~~sG~I~Lng~~l~~iD~h~LRq~INY----lPQeP~IF~GsILeN 569 (710)
T TIGR01193 500 NEKITIVGM-SGSGKSTLAKLL-----VGFFEPQAESGEILLNGISLKDIDRHELRQFINY----LPQEPYIFSGSILEN 569 (710)
T ss_pred CCEEEEECC-CCCCHHHHHHHH-----HCCCCCCCCCCEEEECCCCHHHCCHHHHCCCCCC----CCCCCEEECCCHHHH
T ss_conf 854899736-797489999875-----2035899887736527824453373444123355----688784512317887
Q ss_pred -------------HHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHH--CCCEEEEECCCCCHHH
Q ss_conf -------------8999850235078864223288799922765556676753089999974--7944897057765045
Q gi|254780487|r 74 -------------LAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERW--QFPIILCARTSLGTIN 138 (217)
Q Consensus 74 -------------~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l--~~~vILV~~~~~g~i~ 138 (217)
....++-..|+.+-.+.+.+++--|=|-.+.+-.| ..=-.-+||.| +++|++---. .+-=
T Consensus 570 LLlGak~~~~~~~i~~A~~iAEIk~DIe~mp~Gy~T~LS~~~~~iSGG---QKQRialARaLL~~s~vLilDEs--TSnL 644 (710)
T TIGR01193 570 LLLGAKENVSQDEILKAVEIAEIKDDIEKMPLGYQTELSEEGSSISGG---QKQRIALARALLTDSKVLILDES--TSNL 644 (710)
T ss_pred HHHCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCEEECCCCCCCCCH---HHHHHHHHHHHCCCCCEEEEECC--CCHH
T ss_conf 650378998989999884020112458318887660001037411515---89999999986188867886244--3400
Q ss_pred HHHHHHHHHHHC-CCEEEEEEEC
Q ss_conf 799999999847-9907999976
Q gi|254780487|r 139 HSLLSLETLRNR-NINIIGIAFI 160 (217)
Q Consensus 139 ~~~l~~~~~~~~-g~~i~GiIlN 160 (217)
++++-..-.++. .++=|-+|+-
T Consensus 645 D~itE~KI~~nLl~l~dKTIIFv 667 (710)
T TIGR01193 645 DTITEKKIVENLLNLKDKTIIFV 667 (710)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 37889999984246667626875
No 436
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=75.87 E-value=3.7 Score=20.38 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=22.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 2999835898747999999999984048
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
.++|.|. ||.|||.++--+++.++...
T Consensus 44 n~~iyG~-~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 44 NIIIYGP-TGTGKTATVKFVMEELEESS 70 (366)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHHHHC
T ss_conf 0799889-99873289999999997331
No 437
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=75.83 E-value=4.1 Score=20.12 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 3299983589874799999999998404
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAY 30 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~ 30 (217)
.+++|.|- .|+|||+...-++..+..+
T Consensus 1 r~i~i~G~-aG~GKTtll~kl~~~wa~g 27 (165)
T pfam05729 1 RTVILQGE-AGSGKTTLLQKLALLWAQG 27 (165)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHCC
T ss_conf 98999827-9898999999999999869
No 438
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=75.74 E-value=5.9 Score=19.16 Aligned_cols=129 Identities=14% Similarity=0.109 Sum_probs=54.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHH-HHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCC---CCCCCCCCCCC-CHHHH-HHH
Q ss_conf 3299983589874799999999-998404861201388738068999998557873---11443001451-03478-899
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALV-HALNAYYWKPIQSGMYEETDSKTIHRIGRIPKS---HIIPEKWKLRT-PASPH-LAA 76 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~-~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~-~~~ 76 (217)
..+.|.|. +|+|||+.++-++ +++...+-|-+=... +++-..+..+.....-+ ...-....+.. ..... ...
T Consensus 20 s~~LI~G~-pGsGKT~la~qfl~~ga~~~ge~~lYis~-ee~~~~l~~~~~~~g~~~~~~~~~g~l~i~d~~~~~~~~~~ 97 (231)
T pfam06745 20 RVVLITGG-PGTGKTIFGLQFLYNGALEYGEPGVYVTL-EEPPEDLRENAKSFGWDLEKLEEEGKLAIIDASTSGIGIAE 97 (231)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEEE-CCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 69999858-97259999999999999865896899981-37999999999982998589864696789862544222100
Q ss_pred HHHHCCCHHHH-----HHHHHHCCEEEEECCCCCCCCCCCC------CCHHHHHHHHCCCEEEEECCC
Q ss_conf 98502350788-----6422328879992276555667675------308999997479448970577
Q gi|254780487|r 77 EIDGVIIDPAT-----INPPDINDSIIIEGIGGLLVPLTTE------YLFIDLIERWQFPIILCARTS 133 (217)
Q Consensus 77 ~~~~~~i~~~~-----~~~~~~~D~viIEGagg~~~~~~~~------~~~~dla~~l~~~vILV~~~~ 133 (217)
.......+... .-...+.+.++|.+...+....... ....+..+.+++.++++....
T Consensus 98 ~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsit~l~~~~~~~~~r~~l~~l~~~lk~~g~t~l~t~e~~ 165 (231)
T pfam06745 98 VKGRFDLEELIERLREAIREIGAKRVVIDSITTLFYLLKPAMAREILRRLKRVLKKLGVTAIFTSEKP 165 (231)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 11227999999999999997199889997641640058899999999999999997699199998212
No 439
>TIGR01935 NOT-MenG RraA family; InterPro: IPR010203 This entry includes a number of closely related sequences bacteria and plants. The Escherichia coli member of this family has been characterised as a regulator of RNase E (see IPR004659 from INTERPRO), and its crystal structure has been analysed . E. coli RraA acts as a trans-acting modulator of RNA turnover, binding essential endonuclease RNase E and inhibiting RNA processing . RNase E forms the core of a large RNA-catalysis machine termed the degradosomes. RraA (and RraB) causes remodelling of degradosome composition, which is associated with alterations in RNA decay and global transcript abundance and as such is a bacterial mechanism for the regulation of RNA cleavage .; GO: 0008428 ribonuclease inhibitor activity, 0051252 regulation of RNA metabolic process.
Probab=75.72 E-value=3.5 Score=20.59 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=45.3
Q ss_pred CHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH--HCCCEEEEEEECCCCCCCHHHHHHHH-CCCCEEEEECCC
Q ss_conf 08999997479448970577650457999999998--47990799997697780059999986-199899994788
Q gi|254780487|r 114 LFIDLIERWQFPIILCARTSLGTINHSLLSLETLR--NRNINIIGIAFIGDSMPKVEETIVKI-GRIPHLGRLPKI 186 (217)
Q Consensus 114 ~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~--~~g~~i~GiIlN~~~~~~~~~~le~~-~~ipvLG~iP~~ 186 (217)
..-+++..-+.==|||+| +.||..+||+.-...+ ..+ .=.|||+|++- +-.+.|++. .||.=||..|+-
T Consensus 48 lvr~~L~qpG~GrVLVVD-GgGSlr~ALlGd~lA~~A~~N-GWeGviv~GcV--RDv~~L~~~~lGv~ALAa~P~k 119 (155)
T TIGR01935 48 LVREVLEQPGAGRVLVVD-GGGSLRRALLGDNLAELAEEN-GWEGVIVHGCV--RDVAELAELDLGVKALAAHPRK 119 (155)
T ss_pred HHHHHHHCCCCCCEEEEE-CCCHHHHHCCCCHHHHHHHHC-CCCEEEEECCH--HHHHHHHCCCCCCEEECCCCCC
T ss_conf 688998259997279995-885010210167567886505-95149996230--1688860489010010088876
No 440
>CHL00095 clpC Clp protease ATP binding subunit
Probab=75.62 E-value=3.7 Score=20.42 Aligned_cols=15 Identities=40% Similarity=0.539 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 987479999999999
Q gi|254780487|r 12 TSVGKTIFASALVHA 26 (217)
Q Consensus 12 t~vGKT~vs~~L~~~ 26 (217)
+|||||.+.=||++.
T Consensus 209 pGVGKTAIvEGLA~r 223 (823)
T CHL00095 209 PGVGKTAIAEGLAQR 223 (823)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 998799999999997
No 441
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=75.60 E-value=3 Score=21.02 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=25.6
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCH
Q ss_conf 9998358987479999999999840486120138873806
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETD 44 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D 44 (217)
|-|-|+ +++|||+++-.|++.|.-.| +.+|.....+
T Consensus 2 IaIdGp-agsGKsT~ak~lA~~l~~~~---ldtG~ir~~e 37 (147)
T cd02020 2 IAIDGP-AGSGKSTVAKLLAKKLGLPY---LDTGGIRTEE 37 (147)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHCCEE---ECCCCCCCHH
T ss_conf 888689-97898999999999909907---7665425489
No 442
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=75.56 E-value=3.8 Score=20.31 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=21.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 299983589874799999999998404
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAY 30 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~ 30 (217)
.+||.|. +|+|||...-++++.+...
T Consensus 36 pl~i~G~-~G~GKTHLLqA~~~~~~~~ 61 (219)
T pfam00308 36 PLFIYGG-VGLGKTHLLHAIGNYALRN 61 (219)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHHHH
T ss_conf 2699889-9998889999999999984
No 443
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=75.44 E-value=3.5 Score=20.57 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=23.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 329998358987479999999999840486120
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
|.|.+.|. ||+||+++...|++.....+..++
T Consensus 3 r~iil~Gp-sg~GK~tl~~~l~~~~~~~~~~~v 34 (184)
T smart00072 3 RPIVLSGP-SGVGKGTLLAELIQEIPDAFERVV 34 (184)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 77999999-999999999999863964505778
No 444
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=75.32 E-value=2.7 Score=21.25 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 32999835898747999999999984
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
+.+.|.|. ||+|||++.-.|+|-+.
T Consensus 350 e~vaiVG~-SGsGKSTL~~LL~r~y~ 374 (547)
T PRK10522 350 ELLFLIGG-NGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred CEEEEECC-CCCCHHHHHHHHHCCCC
T ss_conf 88999899-99977999999828966
No 445
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=75.32 E-value=3.4 Score=20.61 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 3299983589874799999999998404
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAY 30 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~ 30 (217)
+.|.|+|| -|+|||+.+-.|+.-++..
T Consensus 5 ~~IvI~G~-IG~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 5 MVIVIEGM-IGAGKSTLAQALAEHLGFK 31 (216)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHCCC
T ss_conf 08998446-4468789999999883885
No 446
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=75.22 E-value=3.5 Score=20.58 Aligned_cols=43 Identities=26% Similarity=0.188 Sum_probs=28.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCH-HHHHHHHH
Q ss_conf 358987479999999999840486120138873806-89999985
Q gi|254780487|r 9 GTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETD-SKTIHRIG 52 (217)
Q Consensus 9 GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D-~~~~~~~~ 52 (217)
|.+ |+|||+.+-.|.+.|+..+++-+.+..+..+. +..++...
T Consensus 3 GiD-GsGKsTq~~~L~~~L~~~g~~v~~~~ep~~~~~g~~ir~~l 46 (186)
T pfam02223 3 GLD-GAGKTTQAELLKERLKEQGIKVVLTREPGGTPIGEKIRELL 46 (186)
T ss_pred CCC-CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 999-98999999999999998799089974999983799999998
No 447
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=75.07 E-value=3.4 Score=20.63 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 329998358987479999999999840
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
..|+.+|.. |+|||+++..|+++|+.
T Consensus 38 HAYLFsGpr-G~GKTt~ARilAkaLNC 63 (775)
T PRK07764 38 HAYLFSGPR-GCGKTSSARILARSLNC 63 (775)
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHCC
T ss_conf 337623788-87888999999999668
No 448
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=74.96 E-value=3.5 Score=20.59 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=21.9
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99983589874799999999998404861
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
+++-|- +|+|||++...+++.+...++.
T Consensus 2 VLL~Gp-pG~GKT~l~~~lA~~~~~~~~~ 29 (131)
T pfam07726 2 VLLEGV-PGLAKTLLARTLARSLGLDFRR 29 (131)
T ss_pred EEEECC-CCCHHHHHHHHHHHHHCCCCEE
T ss_conf 878989-9876999999999995998168
No 449
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=74.93 E-value=3.7 Score=20.38 Aligned_cols=21 Identities=52% Similarity=0.714 Sum_probs=9.5
Q ss_pred EEECCCCCCCHHHHHHHHHHHH
Q ss_conf 9983589874799999999998
Q gi|254780487|r 6 VIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 6 ~I~GT~t~vGKT~vs~~L~~~l 27 (217)
+-+|. ||||||-.+-.|+..|
T Consensus 525 lF~GP-TGVGKTELAkaLA~~L 545 (786)
T COG0542 525 LFLGP-TGVGKTELAKALAEAL 545 (786)
T ss_pred EEECC-CCCCHHHHHHHHHHHH
T ss_conf 86678-8656999999999996
No 450
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=74.75 E-value=3.8 Score=20.35 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=19.4
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 8329998358987479999999999
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHA 26 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~ 26 (217)
.+.++|+|- ||+|||.+++.|++.
T Consensus 14 g~GvLi~G~-SG~GKS~lal~Li~r 37 (149)
T cd01918 14 GIGVLITGP-SGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHC
T ss_conf 989999878-999989999999981
No 451
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB; InterPro: IPR013363 Proteins in this entry are the DotB component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This family is most closely related to the TraJ proteins of plasmid transfer (IPR013364 from INTERPRO), rather than to proteins of other type IV secretion systems..
Probab=74.44 E-value=3.6 Score=20.49 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 2999835898747999999999984
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
-+||+|. ||+||++.-+.++|-+-
T Consensus 136 ~v~~tGa-tGsGkstlla~iirel~ 159 (358)
T TIGR02524 136 VVYVTGA-TGSGKSTLLAAIIRELI 159 (358)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH
T ss_conf 6998626-77636889999999986
No 452
>PRK05642 DNA replication initiation factor; Validated
Probab=74.27 E-value=5.5 Score=19.31 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 32999835898747999999999984048
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
+.+||.|. +|+|||...-+.|+.+...+
T Consensus 46 ~~l~i~G~-~G~GKTHLL~A~~~~~~~~~ 73 (234)
T PRK05642 46 SLIYLWGK-DGVGRSHLLQAACLRFEQRG 73 (234)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHCC
T ss_conf 83899889-99988999999999998079
No 453
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=74.23 E-value=3.9 Score=20.23 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 3299983589874799999999998
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
+-|.++|. ||||||++.-.|++-.
T Consensus 2 ~livl~Gp-sG~GK~tl~~~l~~~~ 25 (180)
T TIGR03263 2 LLIVISGP-SGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHC
T ss_conf 39999899-9889999999999768
No 454
>KOG1610 consensus
Probab=74.03 E-value=6.5 Score=18.88 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=67.0
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 83299983589874799999999998404861201388738068999998557873114430014510347889998502
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGV 81 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
+|.+||||.+||=|+ .||+.+-..||. |-+|+..+.-+..++.... .+...........+.+-..+++.-.
T Consensus 29 ~k~VlITGCDSGfG~-----~LA~~l~~~Gf~-V~Agclt~~gae~L~~~~~--s~rl~t~~LDVT~~esi~~a~~~V~- 99 (322)
T KOG1610 29 DKAVLITGCDSGFGR-----LLAKKLDKKGFR-VFAGCLTEEGAESLRGETK--SPRLRTLQLDVTKPESVKEAAQWVK- 99 (322)
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCE-EEEEEECCCHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHH-
T ss_conf 737998347717779-----999999865887-8887206705898763233--8740247532588789999999999-
Q ss_pred CCHHHHHHHHHHCCEEEEECCC-CCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 3507886422328879992276-55566767530899999747944897057765045799999999847
Q gi|254780487|r 82 IIDPATINPPDINDSIIIEGIG-GLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSLLSLETLRNR 150 (217)
Q Consensus 82 ~i~~~~~~~~~~~D~viIEGag-g~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~l~~~~~~~~ 150 (217)
..+.++.=.-+|--|| ....+..+-.+..|+.+.++... .|++.-+..-.-.+++.
T Consensus 100 ------~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNl-------lG~irvT~~~lpLlr~a 156 (322)
T KOG1610 100 ------KHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNL-------LGTIRVTKAFLPLLRRA 156 (322)
T ss_pred ------HHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHC
T ss_conf ------8646655135773366455668511152999999886530-------54899999888777760
No 455
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=73.99 E-value=4.1 Score=20.12 Aligned_cols=29 Identities=31% Similarity=0.623 Sum_probs=23.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
-|..+|- +++|||+.+--|++.|+.....
T Consensus 3 LiIlTGy-PgsGKTtfakeLak~L~~~i~~ 31 (261)
T COG4088 3 LIILTGY-PGSGKTTFAKELAKELRQEIWR 31 (261)
T ss_pred EEEEECC-CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6998269-9988017899999999972001
No 456
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=73.89 E-value=3.5 Score=20.52 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 8329998358987479999999999840486
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
.+-||.-|+ |.+|||+++..|-..+..-|+
T Consensus 2 G~II~LNG~-SSSGKSsiAraLQ~~l~~p~~ 31 (175)
T cd00227 2 GRIIILNGG-SSAGKSSIARALQSVLAEPWL 31 (175)
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHCCCCEE
T ss_conf 749998689-989889999999984767568
No 457
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=73.80 E-value=4 Score=20.22 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 32999835898747999999999984048
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
|.|.++|. ||+|||++.-.|++.+.-.+
T Consensus 2 klivl~GP-SG~GK~tl~~~L~~~~~~~~ 29 (182)
T pfam00625 2 RPIVLSGP-SGVGKSHIKKALLDEYPEKF 29 (182)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHCCCCE
T ss_conf 86999898-99999999999998486673
No 458
>pfam06431 Polyoma_lg_T_C Polyomavirus large T antigen C-terminus.
Probab=73.76 E-value=3.7 Score=20.44 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=19.4
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 83299983589874799999999998
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
++|+++.----|+|||+++++|+..+
T Consensus 154 KkRy~lFkGPvNsGKTTlAAAlldLc 179 (417)
T pfam06431 154 KKRYWLFKGPIDSGKTTLAAALLDLC 179 (417)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 41158876786777487999999863
No 459
>PRK06893 DNA replication initiation factor; Validated
Probab=73.63 E-value=5.2 Score=19.47 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=21.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 2999835898747999999999984048
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
-+||.|. +|+|||...-++|+.+....
T Consensus 41 ~l~i~G~-~gsGKTHLLqa~~~~~~~~~ 67 (229)
T PRK06893 41 FFYIWGG-KSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHC
T ss_conf 7999899-99988999999999999718
No 460
>PRK08727 hypothetical protein; Validated
Probab=73.56 E-value=5.5 Score=19.33 Aligned_cols=28 Identities=29% Similarity=0.259 Sum_probs=22.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 29998358987479999999999840486
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
.+|+.|- +|+|||....+.|+.....+.
T Consensus 43 ~lyl~G~-~GsGKTHLl~a~~~~~~~~~~ 70 (233)
T PRK08727 43 WLYLSGP-AGTGKTHLALSLCAAAEQAGR 70 (233)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCC
T ss_conf 8999899-999889999999999982799
No 461
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=73.49 E-value=4.1 Score=20.15 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=23.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 2999835898747999999999984048612
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKP 34 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP 34 (217)
-|+..|- ||+|||.++--|++.+.+=+.+.
T Consensus 111 NILliGP-TG~GKTlla~tLAk~l~vPF~ia 140 (411)
T PRK05342 111 NILLIGP-TGSGKTLLAQTLARILNVPFAIA 140 (411)
T ss_pred CEEEECC-CCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 3899899-99778899999999869998998
No 462
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=73.48 E-value=4.2 Score=20.03 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=19.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 9832999835898747999999999
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVH 25 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~ 25 (217)
|.+.|-+||- .++|||+++-.+..
T Consensus 1 ~~~iIglTG~-igsGKStva~~~~~ 24 (201)
T COG0237 1 MMLIIGLTGG-IGSGKSTVAKILAE 24 (201)
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHH
T ss_conf 9649999578-87788999999997
No 463
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=73.35 E-value=6.7 Score=18.78 Aligned_cols=135 Identities=19% Similarity=0.162 Sum_probs=67.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
Q ss_conf 99983589874799999999998404861201388738068999998557873114430014510347889998502350
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVIID 84 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 84 (217)
+.+.| +.|+||++..--|+. ++|.-+..--...+..+.... ...+.|.-.....-..+..+.+++
T Consensus 10 l~~iG-HVD~GKSTl~GrLly----------~~G~id~~tmeK~~~ea~~~g----K~sf~fawvlD~tkeERerGvTi~ 74 (428)
T COG5256 10 LVFIG-HVDAGKSTLVGRLLY----------DLGEIDKRTMEKLEKEAKELG----KESFKFAWVLDKTKEERERGVTID 74 (428)
T ss_pred EEEEC-CCCCCCHHHHHHHHH----------HHCCCCHHHHHHHHHHHHHCC----CCCEEEEEEECCCHHHHHCCEEEE
T ss_conf 99983-787870344556577----------737979899999999998619----771689998538866786666899
Q ss_pred HHHHHHHH-HCCEEEEECCCC-CCC-CCCCCCCHHHHHHHHCCCEEEEECCCCC-------HHHHHHHHHHHHHHCCCEE
Q ss_conf 78864223-288799922765-556-6767530899999747944897057765-------0457999999998479907
Q gi|254780487|r 85 PATINPPD-INDSIIIEGIGG-LLV-PLTTEYLFIDLIERWQFPIILCARTSLG-------TINHSLLSLETLRNRNINI 154 (217)
Q Consensus 85 ~~~~~~~~-~~D~viIEGagg-~~~-~~~~~~~~~dla~~l~~~vILV~~~~~g-------~i~~~~l~~~~~~~~g~~i 154 (217)
.++..... .+.+.|+...|. .++ ....+.+.|| -.|||++++.+ .-.++.-.+-.++..|++-
T Consensus 75 ~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD-------~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~ 147 (428)
T COG5256 75 VAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQAD-------VAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQ 147 (428)
T ss_pred EEEEEEECCCCEEEEEECCCHHHHHHHHHCCHHHCC-------EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 777886437705899607846778987631331336-------7999998889831014365875167899998569756
Q ss_pred EEEEECC
Q ss_conf 9999769
Q gi|254780487|r 155 IGIAFIG 161 (217)
Q Consensus 155 ~GiIlN~ 161 (217)
.-|.+|+
T Consensus 148 lIVavNK 154 (428)
T COG5256 148 LIVAVNK 154 (428)
T ss_pred EEEEEEC
T ss_conf 9999971
No 464
>PRK09354 recA recombinase A; Provisional
Probab=73.23 E-value=6.7 Score=18.78 Aligned_cols=90 Identities=17% Similarity=0.177 Sum_probs=44.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29998358987479999999999840486120138873806899999855787311443001451034788999850235
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDGVII 83 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (217)
-+-|.|. ..+|||++++..++..+..+-.++--.....-|+.+...+ +.+... +...+|.+-..+ ..+
T Consensus 62 ivEi~G~-esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald~~~a~~l-GVd~d~-----llv~qpd~~Eqa-----l~i 129 (350)
T PRK09354 62 IVEIYGP-ESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKL-GVDIDN-----LLVSQPDTGEQA-----LEI 129 (350)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHC-CCCHHH-----EEEECCCHHHHH-----HHH
T ss_conf 8999889-8777999999999999975994799960002798899984-977157-----178568679999-----999
Q ss_pred HHHHHHHHHHCCEEEEECCCCCC
Q ss_conf 07886422328879992276555
Q gi|254780487|r 84 DPATINPPDINDSIIIEGIGGLL 106 (217)
Q Consensus 84 ~~~~~~~~~~~D~viIEGagg~~ 106 (217)
...+.+ +..-|+++|...+.+.
T Consensus 130 ~e~Lvr-sg~vd~IVvDSVaAL~ 151 (350)
T PRK09354 130 ADALVR-SGAVDLIVVDSVAALV 151 (350)
T ss_pred HHHHHH-CCCCCEEEEECCCCCC
T ss_conf 999985-4884189982533457
No 465
>TIGR00888 guaA_Nterm GMP synthase, N-terminal domain; InterPro: IPR004739 The N-terminal region of GMP synthase 6.3.5.2 from EC is recognised by this signature. GMP synthase catalyzes the synthesis of GMP from XMP , . ATP + xanthosine 5'-phosphate + L-glutamine + H(2)O = AMP + diphosphate + GMP + L-glutamate ; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006177 GMP biosynthetic process.
Probab=73.20 E-value=5.2 Score=19.47 Aligned_cols=37 Identities=32% Similarity=0.583 Sum_probs=19.4
Q ss_pred HHHHHHHCCCEEEEEEECCCC-------CCCHHHHHHHHCCCCEEEE
Q ss_conf 999998479907999976977-------8005999998619989999
Q gi|254780487|r 143 SLETLRNRNINIIGIAFIGDS-------MPKVEETIVKIGRIPHLGR 182 (217)
Q Consensus 143 ~~~~~~~~g~~i~GiIlN~~~-------~~~~~~~le~~~~ipvLG~ 182 (217)
+++.++.. +-+||||.+-+ .++..+.+-+ .|+||||+
T Consensus 33 ~~eeI~~~--~P~GiILSGGP~sv~~~n~~~~~~~if~-LgVPvLGI 76 (195)
T TIGR00888 33 PLEEIKEK--NPKGIILSGGPASVYAENAPEADEKIFE-LGVPVLGI 76 (195)
T ss_pred CHHHHHHC--CCCEEEEECCCCCCCCCCCHHHHHHHHH-CCCCEEEE
T ss_conf 77998612--9867997278876467885022488862-79968876
No 466
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=73.20 E-value=3.8 Score=20.34 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 329998358987479999999999840486
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
+-||.=|+ |.+|||+++..|-..+..-|+
T Consensus 2 ~II~LNG~-SSsGKSsiAraLQ~~l~~p~~ 30 (174)
T pfam07931 2 RIILLNGG-SSSGKSSIARALQDILDGPWL 30 (174)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHCCCCEE
T ss_conf 19997489-988879999999984747467
No 467
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=73.16 E-value=6.8 Score=18.75 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 32999835898747999999999984
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
+.+.|.|. +|+|||+..-.|+..++
T Consensus 29 ~~vaIvG~-sGsGKSTLl~ll~gl~~ 53 (173)
T cd03246 29 ESLAIIGP-SGSGKSTLARLILGLLR 53 (173)
T ss_pred CEEEEECC-CCCHHHHHHHHHHCCCC
T ss_conf 99999999-99809999999966666
No 468
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=73.10 E-value=6.8 Score=18.74 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=21.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 2999835898747999999999984048612
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWKP 34 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KP 34 (217)
-|=||||. |||+++-.+.+.|+..+.|.
T Consensus 102 vIgITGTn---GKTTt~~~l~~iL~~~g~~~ 129 (481)
T PRK00139 102 LIGVTGTN---GKTTTAYLIAQILRLLGKKA 129 (481)
T ss_pred EEEEECCC---CCHHHHHHHHHHHHHCCCCC
T ss_conf 89995899---84349999999998749863
No 469
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=73.07 E-value=4.7 Score=19.77 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 3299983589874799999999998
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
+.|+|.|. ||+|||..+--+++.|
T Consensus 95 QsIiiSGE-SGaGKTe~~K~il~yL 118 (692)
T cd01385 95 QCIVISGE-SGSGKTESTNFLIHHL 118 (692)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHH
T ss_conf 28999648-9898789999999999
No 470
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=73.06 E-value=6.8 Score=18.74 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=20.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99983589874799999999998404861
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
+.|.|- +|+|||+.++-+++.....+.+
T Consensus 2 ~li~g~-~g~GKttl~~~~~~~~~~~~~~ 29 (165)
T cd01120 2 ILVFGP-TGSGKTTLALQLALNIATKGGK 29 (165)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHCCCE
T ss_conf 899989-9998999999999998763997
No 471
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=73.04 E-value=4.7 Score=19.73 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 98329998358987479999999999840
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
|+-+|+.+|. .|+|||.++..+++++..
T Consensus 38 ~~HAyLF~Gp-~G~Gk~~~A~~~A~~l~C 65 (395)
T PRK07940 38 MTHAWLFTGP-PGSGRSNAARAFAAALQC 65 (395)
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf 6603763689-987889999999999669
No 472
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=73.03 E-value=6.8 Score=18.74 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 94489705776504579999999984799079999769778
Q gi|254780487|r 124 FPIILCARTSLGTINHSLLSLETLRNRNINIIGIAFIGDSM 164 (217)
Q Consensus 124 ~~vILV~~~~~g~i~~~~l~~~~~~~~g~~i~GiIlN~~~~ 164 (217)
-+||.+++ .|+..-+...++.+.+.++++.-||+|+...
T Consensus 440 ~~Vv~i~G--DG~f~m~~qEL~Tavr~~lpv~ivV~NN~~y 478 (574)
T PRK06882 440 GTVVCVTG--DGSIQMNIQELSTAKQYDIPVVIVSLNNRFL 478 (574)
T ss_pred CCEEEEEC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 85899988--2798655999999999689958999979854
No 473
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=72.95 E-value=3.8 Score=20.32 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=19.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999835898747999999999984
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
+++.|- +|+|||.++-.+++.+.
T Consensus 2 vll~Gp-~G~GKT~la~~la~~l~ 24 (139)
T pfam07728 2 VLLVGP-PGTGKSELAERLAAALS 24 (139)
T ss_pred EEEECC-CCCHHHHHHHHHHHHCC
T ss_conf 899989-97569999999999807
No 474
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.81 E-value=2.6 Score=21.39 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHH-HHHHCCCCC
Q ss_conf 89874799999999-998404861
Q gi|254780487|r 11 DTSVGKTIFASALV-HALNAYYWK 33 (217)
Q Consensus 11 ~t~vGKT~vs~~L~-~~l~~~~~K 33 (217)
.||+|||.|.+||+ ..++.+|.+
T Consensus 5 atgsgkt~~ma~lil~~y~kgyr~ 28 (812)
T COG3421 5 ATGSGKTLVMAGLILECYKKGYRN 28 (812)
T ss_pred CCCCCHHHHHHHHHHHHHHHCHHH
T ss_conf 358870059999999999734041
No 475
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=72.79 E-value=3.7 Score=20.44 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=17.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 983299983589874799999999
Q gi|254780487|r 1 MKLRLVIVGTDTSVGKTIFASALV 24 (217)
Q Consensus 1 M~~~i~I~GT~t~vGKT~vs~~L~ 24 (217)
|+ ++.|.|- +|||||+..-.|+
T Consensus 1 Mk-kVaivGr-pNvGKSTLlN~L~ 22 (143)
T pfam10662 1 MK-KIMLIGR-SGCGKTTLTQALN 22 (143)
T ss_pred CC-EEEEECC-CCCCHHHHHHHHC
T ss_conf 97-5999899-9999999999975
No 476
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=72.65 E-value=3.3 Score=20.70 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 329998358987479999999999840486
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNAYYW 32 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~ 32 (217)
.+++|.|.+ ++|||+....|.+..-...+
T Consensus 6 ~kivv~G~~-g~GKTtl~~~l~~~~~~~~~ 34 (219)
T COG1100 6 FKIVVLGDG-GVGKTTLLNRLVGDEFPEGY 34 (219)
T ss_pred EEEEEECCC-CCCHHHHHHHHHCCCCCCCC
T ss_conf 799999999-99889999999647676556
No 477
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=72.61 E-value=2.2 Score=21.79 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.1
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99835898747999999999984
Q gi|254780487|r 6 VIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 6 ~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
=..|- +|.|||+++..+++.++
T Consensus 25 Hl~GP-aG~GKT~LA~hvA~~r~ 46 (265)
T TIGR02640 25 HLRGP-AGTGKTTLAMHVARKRD 46 (265)
T ss_pred EEECC-CCCCHHHHHHHHHHHCC
T ss_conf 74478-88556899999997368
No 478
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=72.56 E-value=7 Score=18.67 Aligned_cols=167 Identities=13% Similarity=0.069 Sum_probs=74.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH--CCC-CCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 32999835898747999999999984--048-612013887380689999985578731144300145103478899985
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALN--AYY-WKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEID 79 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~--~~~-~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (217)
.-+||+|- .|.|||.|.+-|+..+. ..+ ..-+.+|..... ..++............ ..+..+.+. ..
T Consensus 2 ~v~~V~G~-pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~--~~l~~~l~~~~~~~~~--~~~~~~~~f-i~---- 71 (348)
T pfam09848 2 AVFLVTGG-PGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLV--LVLYEALAGDLKVRKK--KLFRKPTSF-IN---- 71 (348)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHH--HHHHHHHHHHCCHHHC--CCCCCCHHH-HC----
T ss_conf 79999777-99389999999999986440268208995786699--9999998604120010--200072523-16----
Q ss_pred HCCCHHHHHHHHHHCCEEEEECCCCCCCC------CCCCCCHHHHHHHHCCCEEEEECCC---CCHHHHHHHHHHHHHHC
Q ss_conf 02350788642232887999227655566------7675308999997479448970577---65045799999999847
Q gi|254780487|r 80 GVIIDPATINPPDINDSIIIEGIGGLLVP------LTTEYLFIDLIERWQFPIILCARTS---LGTINHSLLSLETLRNR 150 (217)
Q Consensus 80 ~~~i~~~~~~~~~~~D~viIEGagg~~~~------~~~~~~~~dla~~l~~~vILV~~~~---~g~i~~~~l~~~~~~~~ 150 (217)
........+|++|+.-|-=+..- .....-..++.+..+..|.++.+.+ .+.+...-.-.+.+...
T Consensus 72 ------~~~~~~~~~dvvivDEAhRl~~k~~~~~~~~~~~ql~~i~~~a~v~V~~~D~~Q~i~~~e~g~~~~l~~~~~~~ 145 (348)
T pfam09848 72 ------NLHKAPPHEDVVIVDEAHRLWTKSDLYFNFSGPNQLDEIMKRAKVVVFFIDEGQEINTGEIGTIEELKKIAAKW 145 (348)
T ss_pred ------CCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCEECCCCCCCHHHHHHHHHHC
T ss_conf ------52357986778998317866543365567785799999997528599998798488111376899999999868
Q ss_pred CCEEEEEEEC-C---CCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf 9907999976-9---778005999998619989999478
Q gi|254780487|r 151 NINIIGIAFI-G---DSMPKVEETIVKIGRIPHLGRLPK 185 (217)
Q Consensus 151 g~~i~GiIlN-~---~~~~~~~~~le~~~~ipvLG~iP~ 185 (217)
+..+.-+-|. + ...+...+|+..+.+.......|.
T Consensus 146 ~~~~~~~~L~~qfR~~~s~~~~~wv~~lL~~~~~~~~~~ 184 (348)
T pfam09848 146 PAEIYELHLSSQFRSGGSDDYLAWVDALLDNRDIAAKPL 184 (348)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 970479865501045786799999999854776667654
No 479
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=72.46 E-value=5.4 Score=19.39 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=17.6
Q ss_pred EEEEECCCCCCCHHHHHHHHH-HHHHC
Q ss_conf 299983589874799999999-99840
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALV-HALNA 29 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~-~~l~~ 29 (217)
-+++.|. .|+|||++++..+ +.++.
T Consensus 21 iv~~~Gp-AGtGKT~la~~~al~~l~~ 46 (205)
T pfam02562 21 IVFGIGP-AGTGKTYLAVAAAVDALKD 46 (205)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHH
T ss_conf 0799899-9860999999999999971
No 480
>pfam08303 tRNA_lig_kinase tRNA ligase kinase domain. This domain is found in fungal tRNA ligases and has kinase activity. tRNA ligases are enzymes required for the splicing of precursor tRNA molecules containing introns.
Probab=72.34 E-value=2.7 Score=21.27 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.6
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 898747999999999984
Q gi|254780487|r 11 DTSVGKTIFASALVHALN 28 (217)
Q Consensus 11 ~t~vGKT~vs~~L~~~l~ 28 (217)
.-|+|||+|+++|.+.+-
T Consensus 7 tIGCGKTTv~~aL~~LFg 24 (169)
T pfam08303 7 TIGCGKTTVSLTLNNLFP 24 (169)
T ss_pred CCCCCHHHHHHHHHHHCC
T ss_conf 688559999999999778
No 481
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=72.26 E-value=5.2 Score=19.51 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=25.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEE
Q ss_conf 32999835898747999999999984-04861201
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALN-AYYWKPIQ 36 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~-~~~~KPv~ 36 (217)
+.++++|- ++.|||.++.|++|-|- -..|-++.
T Consensus 66 rgiLi~Gp-pgTGKTAlA~gIa~eLG~dvPF~~is 99 (450)
T COG1224 66 RGILIVGP-PGTGKTALAMGIARELGEDVPFVAIS 99 (450)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHCCCCCCEEEC
T ss_conf 17999789-99768899999999858999821501
No 482
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=72.19 E-value=3.3 Score=20.68 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 89874799999999998404861
Q gi|254780487|r 11 DTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 11 ~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
.||+|||+|+-.|++.+=..|++
T Consensus 61 ~tGtGKn~vs~liA~~Ly~~G~~ 83 (127)
T pfam06309 61 WTGTGKNFVAEIIADNLYRDGLR 83 (127)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99987989999999998754347
No 483
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=72.11 E-value=5.8 Score=19.18 Aligned_cols=107 Identities=13% Similarity=0.112 Sum_probs=50.3
Q ss_pred CEEEEECCCCCCCHHHHHHH--HHHHHHCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 32999835898747999999--9999840486120138873806899999855787311443001451034788999850
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASA--LVHALNAYYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG 80 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~--L~~~l~~~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
+-++|+|. .|+|||.-+.. +..+++.+ .||-+..+ .-+-..+........ +..... .+.
T Consensus 1 MI~litG~-pGsGKS~~aV~~~i~~al~~G--R~V~tNI~-gL~~~~~~~~~~~~~------~~~~~~---------~~~ 61 (183)
T pfam05707 1 MIYLITGK-PGSGKTLEAVSYHILPALKKG--RKVITNID-GLNLERFPKVFGEDV------RERLED---------IGY 61 (183)
T ss_pred CEEEEECC-CCCCCCHHHHHHHHHHHHHCC--CEEEECCC-CCCCHHCCCCCCCCC------CCCCCC---------CCC
T ss_conf 97999359-999622999999999998789--98998786-535221012234445------432000---------012
Q ss_pred CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC------HHHHHHHHCCCEEEEECC
Q ss_conf 2350788642232887999227655566767530------899999747944897057
Q gi|254780487|r 81 VIIDPATINPPDINDSIIIEGIGGLLVPLTTEYL------FIDLIERWQFPIILCART 132 (217)
Q Consensus 81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~------~~dla~~l~~~vILV~~~ 132 (217)
...+.......+++|.-+.-++.+-..+.. .....+..+.+++|++-.
T Consensus 62 ----~~~w~~~p~g~liViDE~~~~~~~r~~~~~~~~~i~~l~~HRH~G~DiiliTQ~ 115 (183)
T pfam05707 62 ----MDPWRTYPKGALLVIDEAQTWFPSRRGGDKVPPVLDAFSTHRHLGWDIILITQN 115 (183)
T ss_pred ----CHHHCCCCCCCEEEEECCHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECC
T ss_conf ----223314999879999897655488777888838999999807788208999189
No 484
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=72.08 E-value=4.2 Score=20.07 Aligned_cols=14 Identities=21% Similarity=0.152 Sum_probs=6.6
Q ss_pred HHHHCCEEEEECCC
Q ss_conf 22328879992276
Q gi|254780487|r 90 PPDINDSIIIEGIG 103 (217)
Q Consensus 90 ~~~~~D~viIEGag 103 (217)
+....++++++|.+
T Consensus 140 ie~~~siii~G~t~ 153 (312)
T COG0630 140 IEARKSIIICGGTA 153 (312)
T ss_pred HHCCCCEEEECCCC
T ss_conf 97699499988888
No 485
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=72.06 E-value=3.5 Score=20.55 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 32999835898747999999999984
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
+.+-|.|. ||+|||++.-.|++.++
T Consensus 30 ~~iaIvG~-sGsGKSTLl~ll~gl~~ 54 (238)
T cd03249 30 KTVALVGS-SGCGKSTVVSLLERFYD 54 (238)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHCCC
T ss_conf 99999999-99989999999823861
No 486
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.04 E-value=3.1 Score=20.88 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 32999835898747999999999984
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
+.+.|+|. ||+|||++.-.|++.++
T Consensus 29 e~i~IvG~-sGsGKSTLl~ll~gl~~ 53 (234)
T cd03251 29 ETVALVGP-SGSGKSTLVNLIPRFYD 53 (234)
T ss_pred CEEEEECC-CCCHHHHHHHHHHCCCC
T ss_conf 99999989-99829999999966766
No 487
>PRK00300 gmk guanylate kinase; Provisional
Probab=71.85 E-value=4.1 Score=20.13 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=19.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 2999835898747999999999984048
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
-|.|+|- ||||||++.-.|++.....+
T Consensus 9 livisGP-SG~GK~tl~~~L~~~~p~~~ 35 (208)
T PRK00300 9 LIVLSAP-SGAGKSTLVRALLERDPNDL 35 (208)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHCCCCE
T ss_conf 8999999-98899999999997299868
No 488
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=71.65 E-value=5.4 Score=19.39 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 3299983589874799999999998
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
+.|.|.|. ||+|||..+=-+++.|
T Consensus 92 QsIiiSGE-SGAGKTes~K~il~yL 115 (693)
T cd01377 92 QSILITGE-SGAGKTENTKKVIQYL 115 (693)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHH
T ss_conf 06999688-9888899999999999
No 489
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=71.51 E-value=7.2 Score=18.60 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=10.2
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 589874799999999998
Q gi|254780487|r 10 TDTSVGKTIFASALVHAL 27 (217)
Q Consensus 10 T~t~vGKT~vs~~L~~~l 27 (217)
+.+|.|-|-...||+.|+
T Consensus 74 ~t~GPG~~N~~~gl~~A~ 91 (572)
T PRK06456 74 ATSGPGVTNLVTGLITAY 91 (572)
T ss_pred ECCCHHHHHHHHHHHHHH
T ss_conf 803636999999999999
No 490
>PRK13342 recombination factor protein RarA; Reviewed
Probab=71.47 E-value=4.8 Score=19.70 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=22.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 299983589874799999999998404861
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYYWK 33 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~~K 33 (217)
+++..|. +|+|||+++-.|++.++..++.
T Consensus 39 s~Il~GP-PG~GKTTlA~iiA~~~~~~f~~ 67 (417)
T PRK13342 39 SMILWGP-PGTGKTTLARIIAGATDAEFEA 67 (417)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHCCCEEE
T ss_conf 5998896-9998999999999986898899
No 491
>PRK08084 DNA replication initiation factor; Provisional
Probab=71.38 E-value=6.6 Score=18.83 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=21.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 2999835898747999999999984048
Q gi|254780487|r 4 RLVIVGTDTSVGKTIFASALVHALNAYY 31 (217)
Q Consensus 4 ~i~I~GT~t~vGKT~vs~~L~~~l~~~~ 31 (217)
.+||.|. +|+|||...-++|+.+...+
T Consensus 47 ~l~l~G~-~G~GKTHLLqA~~~~~~~~~ 73 (235)
T PRK08084 47 YIYLWGR-EGAGRSHLLHAACAELSQRG 73 (235)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHCCC
T ss_conf 6999899-99888999999999997079
No 492
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=71.36 E-value=3.6 Score=20.48 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=19.0
Q ss_pred EEEECCCCCCCHHHH-HHHHHHHHHCCCCCC
Q ss_conf 999835898747999-999999984048612
Q gi|254780487|r 5 LVIVGTDTSVGKTIF-ASALVHALNAYYWKP 34 (217)
Q Consensus 5 i~I~GT~t~vGKT~v-s~~L~~~l~~~~~KP 34 (217)
+.-||. |||||.| +--+++..+..+|+|
T Consensus 20 LVLAGA--GSGKT~VI~~KIayLi~~cgY~a 48 (677)
T TIGR01074 20 LVLAGA--GSGKTRVITNKIAYLIQNCGYKA 48 (677)
T ss_pred EEECCC--CCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 465177--77863578889999875158787
No 493
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD; InterPro: IPR014138 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are related families..
Probab=71.35 E-value=2.6 Score=21.41 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=18.2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999835898747999999999984
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
+=+.|- ||||||.+|+++..-|-
T Consensus 15 ~aLvG~-SGSGKS~tc~A~Lg~L~ 37 (239)
T TIGR02770 15 LALVGE-SGSGKSLTCLAILGLLP 37 (239)
T ss_pred EEEECC-CCCCHHHHHHHHHCCCC
T ss_conf 888748-78758999999850358
No 494
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=71.32 E-value=5.1 Score=19.54 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 329998358987479999999999840
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
++||..|- +|+|||+|--.|++.|..
T Consensus 1 m~I~LiG~-mGaGKTtvGr~LA~~L~~ 26 (488)
T PRK13951 1 MRIFLVGM-MGSGKSTIGKRISEVLDL 26 (488)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf 94999899-999877999999998397
No 495
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=71.31 E-value=4.9 Score=19.66 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8329998358987479999999999840
Q gi|254780487|r 2 KLRLVIVGTDTSVGKTIFASALVHALNA 29 (217)
Q Consensus 2 ~~~i~I~GT~t~vGKT~vs~~L~~~l~~ 29 (217)
+-+++.+|. .|+|||+++..++++++.
T Consensus 37 ~HAyLF~GP-~GtGKts~ArifAkaLnC 63 (557)
T PRK07270 37 SHAYLFSGP-RGTGKTSAAKIFAKAMNC 63 (557)
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf 404421089-986899999999999579
No 496
>pfam00931 NB-ARC NB-ARC domain.
Probab=71.18 E-value=4.1 Score=20.12 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 32999835898747999999999984
Q gi|254780487|r 3 LRLVIVGTDTSVGKTIFASALVHALN 28 (217)
Q Consensus 3 ~~i~I~GT~t~vGKT~vs~~L~~~l~ 28 (217)
+-|-|.|.+ |+|||+++-.+++-.+
T Consensus 20 ~vI~I~G~g-GiGKTtLA~~v~~~~~ 44 (285)
T pfam00931 20 GVVGIVGMG-GVGKTTLAKQIYNDDS 44 (285)
T ss_pred EEEEEECCC-CCCHHHHHHHHHCCHH
T ss_conf 399988999-5639999999971655
No 497
>PRK06179 short chain dehydrogenase; Provisional
Probab=71.18 E-value=7.5 Score=18.47 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=22.3
Q ss_pred CC--CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 98--329998358987479999999999840486120138
Q gi|254780487|r 1 MK--LRLVIVGTDTSVGKTIFASALVHALNAYYWKPIQSG 38 (217)
Q Consensus 1 M~--~~i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G 38 (217)
|+ |..+|||.++|+|+.+ ++.|-..|++-+.++
T Consensus 1 M~~~KvalITGassGIG~a~-----A~~la~~G~~V~~~~ 35 (270)
T PRK06179 1 MSNKKVALVTGASSGIGRAT-----AEALARAGYRVFGTS 35 (270)
T ss_pred CCCCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEE
T ss_conf 98995899907246999999-----999998799999996
No 498
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=71.16 E-value=4.4 Score=19.93 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=18.9
Q ss_pred EEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99983589874799999999998
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHAL 27 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l 27 (217)
=||.|.+ |+||+++.++++=+|
T Consensus 26 N~IiGpN-GSGKSsIv~AI~lgL 47 (213)
T cd03277 26 NMIIGPN-GSGKSSIVCAICLGL 47 (213)
T ss_pred EEEECCC-CCCHHHHHHHHHHHH
T ss_conf 7998899-887899999999881
No 499
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=71.14 E-value=3.7 Score=20.44 Aligned_cols=25 Identities=28% Similarity=-0.016 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 8987479999999999840486120
Q gi|254780487|r 11 DTSVGKTIFASALVHALNAYYWKPI 35 (217)
Q Consensus 11 ~t~vGKT~vs~~L~~~l~~~~~KPv 35 (217)
-.|.|||-++..|++.|+..|+||.
T Consensus 59 vGGtGKTP~v~~la~~l~~~g~~~~ 83 (334)
T PRK00652 59 VGGNGKTPVVIWLAEQLQARGVKVG 83 (334)
T ss_pred ECCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 7887779999999999997699367
No 500
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=70.89 E-value=7.7 Score=18.43 Aligned_cols=122 Identities=10% Similarity=0.043 Sum_probs=0.0
Q ss_pred EECCCCCCCHHHHHHHHHHHHHC------CCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 98358987479999999999840------486120138873806899999855787311443001451034788999850
Q gi|254780487|r 7 IVGTDTSVGKTIFASALVHALNA------YYWKPIQSGMYEETDSKTIHRIGRIPKSHIIPEKWKLRTPASPHLAAEIDG 80 (217)
Q Consensus 7 I~GT~t~vGKT~vs~~L~~~l~~------~~~KPv~~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
|+|. +|+|||.+++-|+..... ..-+-+=-.....-++..+.++.........-..-..............+.
T Consensus 24 i~G~-~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~~Rl~qia~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (235)
T cd01123 24 IFGE-FGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYNSDHQLQL 102 (235)
T ss_pred EECC-CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCEEEECCCCHHHHHHH
T ss_conf 9999-998499999999999842475367896299995367758899999999713472454225479637999999999
Q ss_pred CCCHHHHHHHHHHCCEEEEECCCCCCCCCCCC---------------CCHHHHHHHHCCCEEEE
Q ss_conf 23507886422328879992276555667675---------------30899999747944897
Q gi|254780487|r 81 VIIDPATINPPDINDSIIIEGIGGLLVPLTTE---------------YLFIDLIERWQFPIILC 129 (217)
Q Consensus 81 ~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~---------------~~~~dla~~l~~~vILV 129 (217)
................++|+..-.++.....+ .....+|+..+++|+++
T Consensus 103 l~~l~~~l~~~~~v~LvVIDSia~l~r~e~~~~~~~~~r~~~l~~~~~~L~~lA~~~~~aVvvt 166 (235)
T cd01123 103 LEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVIT 166 (235)
T ss_pred HHHHHHHHHCCCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999998730377239999610455566644886447899999999999999999809799996
Done!