HHsearch alignment for GI: 254780487 and conserved domain: pfam01656
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=99.38 E-value=6.1e-12 Score=94.22 Aligned_cols=179 Identities=17% Similarity=0.144 Sum_probs=99.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCC-CHHHHH----------------------HHHHCCCCCCCCC
Q ss_conf 99983589874799999999998404861201388738-068999----------------------9985578731144
Q gi|254780487|r 5 LVIVGTDTSVGKTIFASALVHALNAYYWKPIQSGMYEE-TDSKTI----------------------HRIGRIPKSHIIP 61 (217)
Q Consensus 5 i~I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G~~~~-~D~~~~----------------------~~~~~~~~~~~~~ 61 (217)
T Consensus 1 Iav~s~KGGVGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T pfam01656 1 IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRNL 80 (212)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCCC
T ss_conf 98976899806999999999999978997899838999962588658764344444410101121002456422245555
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 30014510347889998502350788642232887999227655566767530899999747944897057765045799
Q gi|254780487|r 62 EKWKLRTPASPHLAAEIDGVIIDPATINPPDINDSIIIEGIGGLLVPLTTEYLFIDLIERWQFPIILCARTSLGTINHSL 141 (217)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~D~viIEGagg~~~~~~~~~~~~dla~~l~~~vILV~~~~~g~i~~~~ 141 (217)
T Consensus 81 ~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~D~viiD~pp~~~~~------~~~al~~ad-~vivv~~p~~~sl~~~~ 153 (212)
T pfam01656 81 DPLLLIPSNLSLANFESELILEGGEEGLIKLAYDYVIIDGAPGLGEL------TANALVAAD-ILVVPIEPEGVAVLGAQ 153 (212)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH------HHHHHHCCC-EEEEEECCCHHHHHHHH
T ss_conf 87465335015667777779999998766604998999479975599------999998399-89999489769999999
Q ss_pred HHHHHHHHCCCEEEEEEECCCCCC--C----HHHHHHHHCCCCEE---EEECCCCCCC
Q ss_conf 999999847990799997697780--0----59999986199899---9947888888
Q gi|254780487|r 142 LSLETLRNRNINIIGIAFIGDSMP--K----VEETIVKIGRIPHL---GRLPKIDPID 190 (217)
Q Consensus 142 l~~~~~~~~g~~i~GiIlN~~~~~--~----~~~~le~~~~ipvL---G~iP~~~~~~ 190 (217)
T Consensus 154 ~l~~~~~~l~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~d~~v~ 211 (212)
T pfam01656 154 RLLELVERLGLKILGVVLNKVDRGDERHLDKEIEALERKTGIPVLLLLGVIPRDLALS 211 (212)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 9999999859962299991488998366307899999997899751404116877668