HHsearch alignment for GI: 254780487 and conserved domain: pfam08245

>pfam08245 Mur_ligase_M Mur ligase middle domain.
Probab=92.46  E-value=0.81  Score=24.52  Aligned_cols=29  Identities=31%  Similarity=0.248  Sum_probs=23.0

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             98358987479999999999840486120138
Q gi|254780487|r    7 IVGTDTSVGKTIFASALVHALNAYYWKPIQSG   38 (217)
Q Consensus         7 I~GT~t~vGKT~vs~~L~~~l~~~~~KPv~~G   38 (217)
T Consensus         1 VTGT~---GKTTt~~ml~~iL~~~g~~~~~~g   29 (188)
T pfam08245         1 ITGTN---GKTTTTELIAALLSAAGGVVGTGG   29 (188)
T ss_pred             CCCCC---CHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             93758---689999999999983899899838