HHsearch alignment for GI: 254780488 and conserved domain: COG1003
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism].
Probab=98.74 E-value=1.1e-06 Score=65.38 Aligned_cols=305 Identities=14% Similarity=0.172 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHCCCCCCCEEE-CCCCCCHHHHHHHHHHHCCCCCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8999999999720378641110-2654202567777643001334433-2113432025665321123432233333322
Q gi|254780488|r 84 PAEQLARLLIKIAPLGLQYVFF-SDSGSTSIEVALKMALGFFNNNNMP-RNKIVVMEHGYHGDTIGSMSVSMRGAFNNSY 161 (423)
Q Consensus 84 ~~~~la~~l~~~~p~~~~~v~f-~~SGsEA~e~Alklar~~~~~~~~~-r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~ 161 (423)
T Consensus 110 li~~Lq~~L~~IT--G~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~L-IP~SAHGTNPASAam~G-------- 178 (496)
T COG1003 110 LIYELQEWLKEIT--GMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICL-IPDSAHGTNPASAAMAG-------- 178 (496)
T ss_pred HHHHHHHHHHHHC--CCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE-EECCCCCCCHHHHHHCC--------
T ss_conf 9999999999740--976264067877641567899999999975887776798-31655689865676548--------
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCHHHHHCCCCCEEEEECC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCC---
Q ss_conf 2344542100012222222111101221277511343116-554321122223332110011011123420001221---
Q gi|254780488|r 162 EPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLVE-PLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEV--- 237 (423)
Q Consensus 162 ~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~iaavi~E-P~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV--- 237 (423)
T Consensus 179 ------~~VV~V~~~~~G~VDlddLk~k~~-~~~AalMiTnP---sT~Gv--FE~~-I~ei~~ivH~~Gg~vY~DGANlN 245 (496)
T COG1003 179 ------FKVVVVKCDENGNVDLDDLRAKAE-DNLAALMITNP---STLGV--FEED-IREICEIVHEAGGQVYYDGANLN 245 (496)
T ss_pred ------CEEEEEECCCCCCCCHHHHHHHHC-CCEEEEEECCC---CCCCC--CHHH-HHHHHHHHHHCCCEEEECCCCHH
T ss_conf ------559998328988716999998741-31158886168---64545--0451-99999999972998984475435
Q ss_pred -CCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCC----C----------CCCCCCCCCC
Q ss_conf -244445554311-22334444202013443322234443322401321000122----2----------2222233333
Q gi|254780488|r 238 -MTGWGRTGKIFA-CNHADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSD----K----------KKTFFHSSSY 301 (423)
Q Consensus 238 -~tG~GRtG~~~a-~~~~gi~PDi~~~gK~l~gG~~pisav~~~~~i~~~~~~~~----~----------~~~~~h~~T~ 301 (423)
T Consensus 246 A~vG~~rPGd~G~DV~HlNLH---KTF~iPHGGGGPG~GPvgVk~~L~p-fLP~p~~~~~~~~y~~~~~~~~s~g~~~a~ 321 (496)
T COG1003 246 AIVGLARPGDMGFDVVHLNLH---KTFCIPHGGGGPGAGPVGVKAHLAP-FLPGPVVYHDVGEYRLDYDGKKSIGVSAAP 321 (496)
T ss_pred HHHCCCCCCCCCCCEEEEECC---CCCCCCCCCCCCCCCCEEHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 252255665565635775223---1102588889998776025855123-389873347775300367877642265145
Q ss_pred CCCCCCHHHHHCCHHHCCCCCCCCCCCC----HHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCC---CCCCHHHH
Q ss_conf 2222100110000000001123322210----0267898999975189777774553399999706876---66410689
Q gi|254780488|r 302 TANPIACAAALANLQIWEKEPVIERIKN----LERMHADRLSLLKSNKKFVNIRQMGTIVALDFNVQNK---GYFFDKNA 374 (423)
Q Consensus 302 ~gnpl~~aaa~a~L~~i~~~~l~~~~~~----~g~~l~~~l~~L~~~~~v~~vrG~Gl~~~iel~~~~~---~~~~~~~~ 374 (423)
T Consensus 322 ~Gs~~il~~a~~YI~~mG~~GL-~~ase~AvLNANYia~rL~~---~y~~~-y~~~~-~~~HE~ild~r~l~~~~Gv~~~ 395 (496)
T COG1003 322 YGSASILPIAWAYIRMMGADGL-KQASEVAVLNANYIARRLKG---YYPVP-YTGEN-RVAHECILDARPLKKETGVRAL 395 (496)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---CCCCC-CCCCC-CCEEEEEEECHHHHHHCCCCHH
T ss_conf 5761689999999998757788-89899999847999997540---27555-47887-6115899605666764298389
Q ss_pred HHHHHHHHCCEEE----EE--CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999788599----95--199899568987879999999999999998755
Q gi|254780488|r 375 KLKNFFREKKILI----RP--LGHIMYLMPPYCITATDLDHIYNTINEAVDFLE 422 (423)
Q Consensus 375 ~l~~~l~~~Gil~----~~--~gn~i~l~Ppl~it~~eId~~l~~l~~aL~~le 422 (423)
T Consensus 396 DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~ 449 (496)
T COG1003 396 DVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEAD 449 (496)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999998725888874657533565045357777688999999999999999987