HHsearch alignment for GI: 254780488 and conserved domain: COG1104
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].
Probab=99.39 E-value=4.8e-11 Score=94.74 Aligned_cols=339 Identities=15% Similarity=0.162 Sum_probs=180.2
Q ss_pred EEEECHHHHHHHCCCCCCHHHHHHHHHHHHHH--CCHHCCCCCCH--HH-HHHHHHHHHHCCCCCCCEEECCCCCCHHHH
Q ss_conf 64641023775367878999999999999852--20102456897--89-999999997203786411102654202567
Q gi|254780488|r 41 KIIDAISSWWVITHGHRHPIIMNAIRSASENY--DQIIFSEYTHE--PA-EQLARLLIKIAPLGLQYVFFSDSGSTSIEV 115 (423)
Q Consensus 41 ~~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~--~~~~~~~~~~~--~~-~~la~~l~~~~p~~~~~v~f~~SGsEA~e~ 115 (423)
T Consensus 3 iYlD~~AT---Tp---~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNl 76 (386)
T COG1104 3 IYLDNAAT---TP---VDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNL 76 (386)
T ss_pred CCCCCCCC---CC---CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
T ss_conf 25554356---88---9899999999998753189611557579999999999999999839997808995698477779
Q ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCCCCE
Q ss_conf 77764300133443321134320256653211234322333333222344542100012222222111101221277511
Q gi|254780488|r 116 ALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKI 195 (423)
Q Consensus 116 Alklar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~i 195 (423)
T Consensus 77 aI~g~~~a~~~~~~-~~HIIts~-iEH~aVl~~~--------~~-Le~~g~~Vtyl~v~~--~G~v~~e~L~~al~~~T~ 143 (386)
T COG1104 77 AIKGAALAYRNAQK-GKHIITSA-IEHPAVLNTC--------RY-LERQGFEVTYLPVDS--NGLVDLEQLEEALRPDTI 143 (386)
T ss_pred HHHHHHHHHHCCCC-CCEEEECC-CCCHHHHHHH--------HH-HHHCCCEEEEECCCC--CCEECHHHHHHHCCCCCE
T ss_conf 99864876423568-98588755-4349999999--------99-986697579968888--972879999986388845
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 34311655432112222333211001101112342000122124444555431122334444202013443322234443
Q gi|254780488|r 196 AAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLSKGITGGALPLAA 275 (423)
Q Consensus 196 aavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~gi~PDi~~~gK~l~gG~~pisa 275 (423)
T Consensus 144 LVSim--~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkipi----~~~~~~vD~ls~SaHK~~GpkGiGa 212 (386)
T COG1104 144 LVSIM--HANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIPI----DLEELGVDLLSFSAHKFGGPKGIGA 212 (386)
T ss_pred EEEEE--ECCCCEEECCC----HHHHHHHHHHCCCEEEEEHHHH-CCCEEC----CCCCCCCCEEEEEHHHCCCCCCEEE
T ss_conf 99998--50268201120----9999999997598179761332-576004----6021576568731121369984279
Q ss_pred CCCCHHHHHH-HC-CCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCC--CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 3224013210-00-122222222333332222100110000000001--1233222100267898999975189777774
Q gi|254780488|r 276 TLCSEEIFDS-HL-SSDKKKTFFHSSSYTANPIACAAALANLQIWEK--EPVIERIKNLERMHADRLSLLKSNKKFVNIR 351 (423)
Q Consensus 276 v~~~~~i~~~-~~-~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l~~L~~~~~v~~vr 351 (423)
T Consensus 213 Lyv~~~~~~~p~i~GGgQE~g~-RsGTen--v~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~--p~~-~~~ 286 (386)
T COG1104 213 LYVRPGVRLEPLIHGGGQERGL-RSGTEN--VPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEII--PDV-YLN 286 (386)
T ss_pred EEECCCCCCCCEEECCCCCCCC-CCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCE-EEC
T ss_conf 9987998737446047678997-888755--7999999999999998778889999999999999998509--968-986
Q ss_pred CCC-----CEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEC------------------------CCEEEECCCCCC
Q ss_conf 553-----399999706876664106899999999788599951------------------------998995689878
Q gi|254780488|r 352 QMG-----TIVALDFNVQNKGYFFDKNAKLKNFFREKKILIRPL------------------------GHIMYLMPPYCI 402 (423)
Q Consensus 352 G~G-----l~~~iel~~~~~~~~~~~~~~l~~~l~~~Gil~~~~------------------------gn~i~l~Ppl~i 402 (423)
T Consensus 287 g~~~~rlP~~~~~~f~--g-----v~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~t 359 (386)
T COG1104 287 GDDEPRLPNILNFSFP--G-----VEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFT 359 (386)
T ss_pred CCCCCCCCCEEEEEEC--C-----CCHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCEEEECCCCC
T ss_conf 8854578986899968--9-----75789998610408687336434589987149999809996883724899737999
Q ss_pred CHHHHHHHHHHHHHHHHHHC
Q ss_conf 79999999999999998755
Q gi|254780488|r 403 TATDLDHIYNTINEAVDFLE 422 (423)
Q Consensus 403 t~~eId~~l~~l~~aL~~le 422 (423)
T Consensus 360 t~eei~~~~~~l~~~i~~lr 379 (386)
T COG1104 360 TEEEIDAAAEALKEIIKRLR 379 (386)
T ss_pred CHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999986