HHsearch alignment for GI: 254780488 and conserved domain: PRK08960

>PRK08960 hypothetical protein; Provisional.
Probab=99.69  E-value=4.9e-15  Score=121.70  Aligned_cols=338  Identities=14%  Similarity=0.111  Sum_probs=192.9

Q ss_pred             CCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCC-HHCCCCCCHHHHHHHHHHHHHCCCC--CCCEEECCCCCCHH
Q ss_conf             89876464102377536787899999999999985220-1024568978999999999720378--64111026542025
Q gi|254780488|r   37 ENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQ-IIFSEYTHEPAEQLARLLIKIAPLG--LQYVFFSDSGSTSI  113 (423)
Q Consensus        37 ~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~--~~~v~f~~SGsEA~  113 (423)
T Consensus        29 ~~G~~vi~l~~G~pdf---~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~d~I~vt~G~~~al  105 (387)
T PRK08960         29 AAGHDVIHLEIGEPDF---TTAAPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGLDVDPERILVTPGGSGAL  105 (387)
T ss_pred             HCCCCEEECCCCCCCC---CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHHH
T ss_conf             7799807889948999---8899999999999853899889987729999999999999858999843289808669999


Q ss_pred             HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCCC
Q ss_conf             67777643001334433211343202566532112343223333332223445421000122222221111012212775
Q gi|254780488|r  114 EVALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQ  193 (423)
Q Consensus       114 e~Alklar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~  193 (423)
T Consensus       106 ~~~~~~l~-------~pGD~Vlv~~P~Yp~~~~~~~~~~-------------~~~~~vp~~~~~~~~~~~~~le~~~~~~  165 (387)
T PRK08960        106 LLASSLLV-------DPGKHWLLADPGYPCNRHFLRLVE-------------GAAQLVPVGPDTRYQLTPALVERHWDSD  165 (387)
T ss_pred             HHHHHHHC-------CCCCEEEEECCCCCCHHHHHHHHC-------------CEEEEEECCCCCCCCCCHHHHHHHCCCC
T ss_conf             99999956-------999879981787655289999853-------------7449997575447788999999727878


Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC---EEECCCCCCCCC
Q ss_conf             11343116554321122223332110011011123420001221244445554311223344442---020134433222
Q gi|254780488|r  194 KIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPD---ILCLSKGITGGA  270 (423)
Q Consensus       194 ~iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~gi~PD---i~~~gK~l~gG~  270 (423)
T Consensus       166 ~~~iil~nP--~NPTG~v~-s~~~l~~l~~~a~~~~~~vI~DEiY~~l~~~~~~~s--~~~~~~~~i~i~S~SK~~~~~G  240 (387)
T PRK08960        166 SVGALVASP--ANPTGTLL-SRDELAALSQALKARGGHLVVDEIYHGLTYGVDAAS--VLEVDDSAFVLNSFSKYFGMTG  240 (387)
T ss_pred             CEEEEECCC--CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCC--CCCCCCCEEEEEECCCCCCCCC
T ss_conf             729997689--89886314-689999999987623977998446144125898653--1136787799950643255776


Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCC----CCHHHHHHHHHHHHHHCCC
Q ss_conf             344433224013210001222222223333322221001100000000011233222----1002678989999751897
Q gi|254780488|r  271 LPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIERI----KNLERMHADRLSLLKSNKK  346 (423)
Q Consensus       271 ~pisav~~~~~i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~----~~~g~~l~~~l~~L~~~~~  346 (423)
T Consensus       241 ~RiG~~v~p~~~i~~~~~~~~------~~~~~~~~~~Q~aa~~al~~-~~~~~~~~~~~~~~~rrd~l~~~---l~~~~~  310 (387)
T PRK08960        241 WRLGWLVAPPAAVPELEKLAQ------NLYISASSMAQHAALACFEP-ETIAILEARRAEFQRRRDFLLPA---LRELGF  310 (387)
T ss_pred             CEEEEEEECHHHHHHHHHHHH------HCCCCCCCHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHH---HHHCCC
T ss_conf             305899988999999999998------54377987999999999621-55999999999999999999999---997599


Q ss_pred             EEEECCCCCEEE-EEECCCCCCCCCHHHHHHHHHH-HHCCEEEEEC---C-----CEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             777745533999-9970687666410689999999-9788599951---9-----9899568987879999999999999
Q gi|254780488|r  347 FVNIRQMGTIVA-LDFNVQNKGYFFDKNAKLKNFF-REKKILIRPL---G-----HIMYLMPPYCITATDLDHIYNTINE  416 (423)
Q Consensus       347 v~~vrG~Gl~~~-iel~~~~~~~~~~~~~~l~~~l-~~~Gil~~~~---g-----n~i~l~Ppl~it~~eId~~l~~l~~  416 (423)
T Consensus       311 ~~~~~P~G~~y~w~~~--~~--~~-~d~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~~Rls~--~~~~~~l~eal~RL~~  383 (387)
T PRK08960        311 GIAVEPQGAFYLYADI--SA--FG-GDAFAFCRHFLETEHVAFTPGLDFGRHQAGHHVRFAY--TQSLPRLQEAVERIAR  383 (387)
T ss_pred             CCCCCCCEEEEEEEEC--CC--CC-CCHHHHHHHHHHHCCEEEECCHHHCCCCCCCEEEEEE--CCCHHHHHHHHHHHHH
T ss_conf             6045898666997888--88--89-9999999999986999997472208999999899997--6999999999999999


Q ss_pred             HHH
Q ss_conf             998
Q gi|254780488|r  417 AVD  419 (423)
Q Consensus       417 aL~  419 (423)
T Consensus       384 ~Lk  386 (387)
T PRK08960        384 GLR  386 (387)
T ss_pred             HHC
T ss_conf             966