HHsearch alignment for GI: 254780488 and conserved domain: TIGR00461
>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=96.05 E-value=0.15 Score=30.73 Aligned_cols=339 Identities=14% Similarity=0.211 Sum_probs=191.2
Q ss_pred ECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCC--------------CCHHHHHHHHHHHHHCCCCCCCEEE-CCC
Q ss_conf 4102377536787899999999999985220102456--------------8978999999999720378641110-265
Q gi|254780488|r 44 DAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEY--------------THEPAEQLARLLIKIAPLGLQYVFF-SDS 108 (423)
Q Consensus 44 D~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~~~~~~~--------------~~~~~~~la~~l~~~~p~~~~~v~f-~~S 108 (423)
T Consensus 503 DLaLn~sMIPLGSCTMKLNata-E----MmPiTWPeF~~iHPF~P~~Q~eGY~~lia~Le~wL~~iT--GfDaislQPNs 575 (965)
T TIGR00461 503 DLALNNSMIPLGSCTMKLNATA-E----MMPITWPEFSEIHPFAPSEQVEGYQELIAQLEKWLVEIT--GFDAISLQPNS 575 (965)
T ss_pred HHHHHHCCCCCCCCHHHHHHHH-C----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCCEECCCCC
T ss_conf 4767514674442032230110-0----267767010565878885022589999999988752105--76624417888
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHH
Q ss_conf 42025677776430013344332113432025665321123432233333322234454210001222222211110122
Q gi|254780488|r 109 GSTSIEVALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEK 188 (423)
Q Consensus 109 GsEA~e~Alklar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~ 188 (423)
T Consensus 576 GaQGEYaGL~vIR~YheSrgE~hRniCLIP~SAHGTNPASA~M--------------aGm~VVpV~Cd~~GniDl~DL~~ 641 (965)
T TIGR00461 576 GAQGEYAGLRVIRSYHESRGEEHRNICLIPVSAHGTNPASAAM--------------AGMQVVPVKCDKDGNIDLVDLKA 641 (965)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHHH--------------CCCEEEEEEECCCCCEEHHHHHH
T ss_conf 8446678899999987605889874453077767887289961--------------69868987656999500777788
Q ss_pred H--CCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCC----CCCCCCCCCCCCCCCCCCCCCCEE--
Q ss_conf 1--27751134311655432112222333211001101112342000122----124444555431122334444202--
Q gi|254780488|r 189 H--CSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADE----VMTGWGRTGKIFACNHADITPDIL-- 260 (423)
Q Consensus 189 ~--~~~~~iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DE----V~tG~GRtG~~~a~~~~gi~PDi~-- 260 (423)
T Consensus 642 KAEq~gd~Laa~MvT-Y-PSThGv--fE~t-I~~~~diVH~FGGqVYlDGANMNAQVGltsPgd~G--------ADVcHL 708 (965)
T TIGR00461 642 KAEQYGDELAAVMVT-Y-PSTHGV--FEET-IREVCDIVHRFGGQVYLDGANMNAQVGLTSPGDLG--------ADVCHL 708 (965)
T ss_pred HHHHCCCCEEEEEEE-C-CCCCCC--CHHH-HCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCC--------CCHHHH
T ss_conf 887506652567750-5-877664--3222-10013114426884752456642233667861105--------634343
Q ss_pred ----ECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC--C-----CCCCCCCCCC----HHHHHCCHHHCCCCCCCC
Q ss_conf ----013443322234443322401321000122222222--3-----3333222210----011000000000112332
Q gi|254780488|r 261 ----CLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFF--H-----SSSYTANPIA----CAAALANLQIWEKEPVIE 325 (423)
Q Consensus 261 ----~~gK~l~gG~~pisav~~~~~i~~~~~~~~~~~~~~--h-----~~T~~gnpl~----~aaa~a~L~~i~~~~l~~ 325 (423)
T Consensus 709 NLHKTFcIPHGGGG-PgmgPIgVKsHL~pflP~~~~~s~~~~~g~~~sig~vSaAPyGsAsiLpISw~YI~MMG~eGL-~ 786 (965)
T TIGR00461 709 NLHKTFCIPHGGGG-PGMGPIGVKSHLIPFLPKTDVVSVVELEGESKSIGAVSAAPYGSASILPISWMYIKMMGAEGL-K 786 (965)
T ss_pred HCCCCEECCCCCCC-CCCCCHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCC-H
T ss_conf 05442012686787-877522246402245888760001565312324354523654541466889999985220135-0
Q ss_pred CCCCH----HHHHHHHHHHHHHCCCEEEEC--CCCCEEEEEECCCCCCCC---CHHHHHHHHHHHHCCEEE----EECCC
Q ss_conf 22100----267898999975189777774--553399999706876664---106899999999788599----95199
Q gi|254780488|r 326 RIKNL----ERMHADRLSLLKSNKKFVNIR--QMGTIVALDFNVQNKGYF---FDKNAKLKNFFREKKILI----RPLGH 392 (423)
Q Consensus 326 ~~~~~----g~~l~~~l~~L~~~~~v~~vr--G~Gl~~~iel~~~~~~~~---~~~~~~l~~~l~~~Gil~----~~~gn 392 (423)
T Consensus 787 kas~vAiLnaNYma~R---L~d~ypiLf~nemg~~~~vAHEcIlDlRplK~~~gie~~DvAKRL~DyGFHAPT~sfPV~G 863 (965)
T TIGR00461 787 KASEVAILNANYMAKR---LKDYYPILFVNEMGRDKRVAHECILDLRPLKKKAGIEALDVAKRLIDYGFHAPTLSFPVAG 863 (965)
T ss_pred HHHHHHHHHHHHHHHH---HHHCCCEEEEECCCCCCCEEEEEEECHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 3557775626689988---7610765443115788831356763525545651765445676641157765332336787
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89956898787999999999999999875
Q gi|254780488|r 393 IMYLMPPYCITATDLDHIYNTINEAVDFL 421 (423)
Q Consensus 393 ~i~l~Ppl~it~~eId~~l~~l~~aL~~l 421 (423)
T Consensus 864 TlMvEPTESEsl~ELDRF~DAMiaI~~Ei 892 (965)
T TIGR00461 864 TLMVEPTESESLEELDRFCDAMIAIKEEI 892 (965)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 42005546566312458888999999999