HHsearch alignment for GI: 254780488 and conserved domain: TIGR01328
>TIGR01328 met_gam_lyase methionine gamma-lyase; InterPro: IPR006237 This family of sequences is a methionine gamma-lyase subset of a family of PLP-dependent trans-sulphuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine..
Probab=92.70 E-value=0.24 Score=29.27 Aligned_cols=292 Identities=15% Similarity=0.241 Sum_probs=157.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHH-HHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 245689789999999997203786411102654202567777-6430013344332113432025665321123432233
Q gi|254780488|r 77 FSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALK-MALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRG 155 (423)
Q Consensus 77 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~SGsEA~e~Alk-lar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~ 155 (423)
T Consensus 53 YsRlgNPTv~~LE~riA~LE--g~EAavAt~SGMgAi~A~l~~~lkA--------gDh~i~-d~~lYGCTfall~~~--- 118 (392)
T TIGR01328 53 YSRLGNPTVDLLERRIAELE--GAEAAVATASGMGAIAATLLSLLKA--------GDHVIS-DETLYGCTFALLEDA--- 118 (392)
T ss_pred EECCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC--------CCEEEE-CCCCCCCHHHHHHHH---
T ss_conf 85267713778888987542--0467788751289999999999852--------875774-387420148998732---
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CEECC
Q ss_conf 33332223445421000122222221111012212775113431165543211222233321100110111234-20001
Q gi|254780488|r 156 AFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYD-TLLIA 234 (423)
Q Consensus 156 ~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g-~llI~ 234 (423)
T Consensus 119 -----ltkfgi~v~f~~~~~-------pee~~a~i~d-nT~ivYfET-PaN-Ptm~liD---~e~v~r~A~~~gG~kViv 180 (392)
T TIGR01328 119 -----LTKFGIDVKFVDMAS-------PEEVKAAIKD-NTKIVYFET-PAN-PTMKLID---LELVVRVAHEKGGVKVIV 180 (392)
T ss_pred -----HHHHCCEEEEECCCC-------HHHHHHHCCC-CCEEEEEEC-CCC-CCHHHHH---HHHHHHHHHHCCCEEEEE
T ss_conf -----677375279831787-------7999984489-977999865-998-7525775---999999997529828998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCC-CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC---H
Q ss_conf 22124444555431122334444202013--44332-223444332240132100012222222233333222210---0
Q gi|254780488|r 235 DEVMTGWGRTGKIFACNHADITPDILCLS--KGITG-GALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIA---C 308 (423)
Q Consensus 235 DEV~tG~GRtG~~~a~~~~gi~PDi~~~g--K~l~g-G~~pisav~~~~~i~~~~~~~~~~~~~~h~~T~~gnpl~---~ 308 (423)
T Consensus 181 DNTfatP------~lt~P~alG~D~VVHSATKYigGHgDvVaG~~~G~~e~~q~iR~~g~KD~t--G~Vi--SPfdAwL~ 250 (392)
T TIGR01328 181 DNTFATP------YLTRPVALGVDVVVHSATKYIGGHGDVVAGVLIGDAELLQRIRLVGVKDMT--GAVI--SPFDAWLV 250 (392)
T ss_pred ECCCCCH------HHCCHHHCCCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCC--CCEE--CHHHHHHH
T ss_conf 5662770------013803618776894241213761221122110775667440111100056--6500--55789999
Q ss_pred HHHHCCHHH-CCCCCCCCCCCCHHHHHHH----------HHHHHHHCCCEE-EECCCCCEEEEEECCCCCCCCCHHHHHH
Q ss_conf 110000000-0011233222100267898----------999975189777-7745533999997068766641068999
Q gi|254780488|r 309 AAALANLQI-WEKEPVIERIKNLERMHAD----------RLSLLKSNKKFV-NIRQMGTIVALDFNVQNKGYFFDKNAKL 376 (423)
Q Consensus 309 aaa~a~L~~-i~~~~l~~~~~~~g~~l~~----------~l~~L~~~~~v~-~vrG~Gl~~~iel~~~~~~~~~~~~~~l 376 (423)
T Consensus 251 lRGLkTL~~RM~rhs--enA~kvAe~Lk~HPaVe~V~YPG~~~hp~hdiaakQM~~gGgm~~F~lKgg~-----a~~~k~ 323 (392)
T TIGR01328 251 LRGLKTLAVRMKRHS--ENAEKVAEYLKEHPAVEKVYYPGLEEHPDHDIAAKQMKKGGGMLAFELKGGE-----ADAKKL 323 (392)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCH-----HHHHHH
T ss_conf 743667778887730--5389999985238860212368877888740899987404872775432566-----899999
Q ss_pred HHHHH--HC--------CEEEEEC------------------CCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999--78--------8599951------------------9989956898787999999999999999875
Q gi|254780488|r 377 KNFFR--EK--------KILIRPL------------------GHIMYLMPPYCITATDLDHIYNTINEAVDFL 421 (423)
Q Consensus 377 ~~~l~--~~--------Gil~~~~------------------gn~i~l~Ppl~it~~eId~~l~~l~~aL~~l 421 (423)
T Consensus 324 ~n~LkLIr~AVSLGdaEtLIQHPAsMTHavvp~eeR~aaGI~~gm~RlS----vGlEd~~d~~ADl~~aL~~L 392 (392)
T TIGR01328 324 LNRLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGISEGMVRLS----VGLEDVDDVLADLKQALDAL 392 (392)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEE----CCHHHHHHHHHHHHHHHCCC
T ss_conf 8755576655312774200058764667898856784447664612230----04526999999999852149