HHsearch alignment for GI: 254780488 and conserved domain: TIGR03235

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=98.59  E-value=1.9e-07  Score=70.40  Aligned_cols=261  Identities=11%  Similarity=0.101  Sum_probs=132.5

Q ss_pred             EEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHH-------HHHHHHHHHCCCCCCCEEECCCCCCHHH
Q ss_conf             464102377536787899999999999985220102456897899-------9999999720378641110265420256
Q gi|254780488|r   42 IIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPAE-------QLARLLIKIAPLGLQYVFFSDSGSTSIE  114 (423)
Q Consensus        42 ~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~~~~~~~~~~~~~-------~la~~l~~~~p~~~~~v~f~~SGsEA~e  114 (423)
T Consensus         1 YLD~aAT------tp~~~~v~~~~~~~~~~~-~~Np~s~~h~~g~~a~~~le~aR~~ia~~lga~~~eiiFTsg~Tes~n   73 (354)
T TIGR03235         1 YLDHNAT------TPVDPEVAEVMLPFLLEE-FGNPGSRTHEHGHNAKKAVERARKQVAEALGAQTKEVIFTSGATESNN   73 (354)
T ss_pred             CCCCCCC------CCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH
T ss_conf             9888678------989999999999999866-879730312899999999999999999980999677899688379999


Q ss_pred             HHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCCCC
Q ss_conf             77776430013344332113432025665321123432233333322234454210001222222211110122127751
Q gi|254780488|r  115 VALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQK  194 (423)
Q Consensus       115 ~Alklar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~  194 (423)
T Consensus        74 l~i~g~~~~~--~~~-g~~ii~s~~E-H~svl~~-------~~~--l~~~G~~v~~~~vd~--~G~id~~~l~~~l~~~t  138 (354)
T TIGR03235        74 IAILGLARAH--ENK-GKHIITTAIE-HPAILEP-------ARA--LERNGFTVTYLEVDE--SGRVSVEELADAIRDDT  138 (354)
T ss_pred             HHHHHHHHHH--HCC-CCEEEECHHH-HHHHHHH-------HHH--HHHCCCEEEEECCCC--CCCCCHHHHHHHHCCCC
T ss_conf             9999999850--269-9999981003-0447999-------999--996496899955578--98287799998726897


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCCCCC
Q ss_conf             1343116554321122223332110011011123420001221244445554311223344442020134-433222344
Q gi|254780488|r  195 IAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLSK-GITGGALPL  273 (423)
Q Consensus       195 iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~gi~PDi~~~gK-~l~gG~~pi  273 (423)
T Consensus       139 ~-lvsi~-~~nnetG~i~p----i~~i~~~~~~~g~~~~vDa~Q~-~g~~----~id~~~~~~D~~s~S~HK~-~GP~Gi  206 (354)
T TIGR03235       139 L-LVSIM-HVNNETGSLQP----IREIAELCEAREVFFHSDAAQV-VGKI----TVDLERDHIDLISLSGHKA-YGPKGI  206 (354)
T ss_pred             E-EEEEE-CCCCCCCCCCC----HHHHHHHHHCCCCEEEEECHHC-CCCC----CCCHHHHCCCEEEEECCCC-CCCCCE
T ss_conf             7-99998-87566676388----9999886522564156250011-5875----5577884997376310003-488714


Q ss_pred             CCCCCCHHHHH------HHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCC--CCCCCCCCCHHHHHHHHHH
Q ss_conf             43322401321------000122222222333332222100110000000001--1233222100267898999
Q gi|254780488|r  274 AATLCSEEIFD------SHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEK--EPVIERIKNLERMHADRLS  339 (423)
Q Consensus       274 sav~~~~~i~~------~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l~  339 (423)
T Consensus       207 G~L~vr~~~~~~~~l~Pl~~GGgqe~g~-r~GT~n--v~~i~g~~~A~~~~~~~~~~~~~~~~~l~~~l~~~L~  277 (354)
T TIGR03235       207 GALYIRKRGKPKAPLAPIMFGGGQERGL-RPGTLP--VPLIVGMGEAAEIARRNAQAWGVRLRAMCNLLRDALQ  277 (354)
T ss_pred             EEEEEECCCCCCCCCCCEECCCCCCCCC-CCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999804667666646403689886874-689965--9999999999999998289999999999999999997