HHsearch alignment for GI: 254780488 and conserved domain: TIGR03235
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=98.59 E-value=1.9e-07 Score=70.40 Aligned_cols=261 Identities=11% Similarity=0.101 Sum_probs=132.5
Q ss_pred EEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHH-------HHHHHHHHHCCCCCCCEEECCCCCCHHH
Q ss_conf 464102377536787899999999999985220102456897899-------9999999720378641110265420256
Q gi|254780488|r 42 IIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPAE-------QLARLLIKIAPLGLQYVFFSDSGSTSIE 114 (423)
Q Consensus 42 ~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~~~~~~~~~~~~~-------~la~~l~~~~p~~~~~v~f~~SGsEA~e 114 (423)
T Consensus 1 YLD~aAT------tp~~~~v~~~~~~~~~~~-~~Np~s~~h~~g~~a~~~le~aR~~ia~~lga~~~eiiFTsg~Tes~n 73 (354)
T TIGR03235 1 YLDHNAT------TPVDPEVAEVMLPFLLEE-FGNPGSRTHEHGHNAKKAVERARKQVAEALGAQTKEVIFTSGATESNN 73 (354)
T ss_pred CCCCCCC------CCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH
T ss_conf 9888678------989999999999999866-879730312899999999999999999980999677899688379999
Q ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCCCC
Q ss_conf 77776430013344332113432025665321123432233333322234454210001222222211110122127751
Q gi|254780488|r 115 VALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQK 194 (423)
Q Consensus 115 ~Alklar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~ 194 (423)
T Consensus 74 l~i~g~~~~~--~~~-g~~ii~s~~E-H~svl~~-------~~~--l~~~G~~v~~~~vd~--~G~id~~~l~~~l~~~t 138 (354)
T TIGR03235 74 IAILGLARAH--ENK-GKHIITTAIE-HPAILEP-------ARA--LERNGFTVTYLEVDE--SGRVSVEELADAIRDDT 138 (354)
T ss_pred HHHHHHHHHH--HCC-CCEEEECHHH-HHHHHHH-------HHH--HHHCCCEEEEECCCC--CCCCCHHHHHHHHCCCC
T ss_conf 9999999850--269-9999981003-0447999-------999--996496899955578--98287799998726897
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCCCCC
Q ss_conf 1343116554321122223332110011011123420001221244445554311223344442020134-433222344
Q gi|254780488|r 195 IAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLSK-GITGGALPL 273 (423)
Q Consensus 195 iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~gi~PDi~~~gK-~l~gG~~pi 273 (423)
T Consensus 139 ~-lvsi~-~~nnetG~i~p----i~~i~~~~~~~g~~~~vDa~Q~-~g~~----~id~~~~~~D~~s~S~HK~-~GP~Gi 206 (354)
T TIGR03235 139 L-LVSIM-HVNNETGSLQP----IREIAELCEAREVFFHSDAAQV-VGKI----TVDLERDHIDLISLSGHKA-YGPKGI 206 (354)
T ss_pred E-EEEEE-CCCCCCCCCCC----HHHHHHHHHCCCCEEEEECHHC-CCCC----CCCHHHHCCCEEEEECCCC-CCCCCE
T ss_conf 7-99998-87566676388----9999886522564156250011-5875----5577884997376310003-488714
Q ss_pred CCCCCCHHHHH------HHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCC--CCCCCCCCCHHHHHHHHHH
Q ss_conf 43322401321------000122222222333332222100110000000001--1233222100267898999
Q gi|254780488|r 274 AATLCSEEIFD------SHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEK--EPVIERIKNLERMHADRLS 339 (423)
Q Consensus 274 sav~~~~~i~~------~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l~ 339 (423)
T Consensus 207 G~L~vr~~~~~~~~l~Pl~~GGgqe~g~-r~GT~n--v~~i~g~~~A~~~~~~~~~~~~~~~~~l~~~l~~~L~ 277 (354)
T TIGR03235 207 GALYIRKRGKPKAPLAPIMFGGGQERGL-RPGTLP--VPLIVGMGEAAEIARRNAQAWGVRLRAMCNLLRDALQ 277 (354)
T ss_pred EEEEEECCCCCCCCCCCEECCCCCCCCC-CCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999804667666646403689886874-689965--9999999999999998289999999999999999997