HHsearch alignment for GI: 254780488 and conserved domain: TIGR03246
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=100.00 E-value=0 Score=739.40 Aligned_cols=386 Identities=28% Similarity=0.438 Sum_probs=350.3
Q ss_pred HHHCCCCCCCCEEEEEEEEEEEEECCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHH
Q ss_conf 12276787786468862132899689876464102377536787899999999999985220102456897899999999
Q gi|254780488|r 13 PFVQHFCNPTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPAEQLARLL 92 (423)
Q Consensus 13 ~~~~~~~~~~p~~i~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~~~~~~~~~~~~~~la~~l 92 (423)
T Consensus 8 ~~~~~~y~~~P~vi~ra~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~-~~~~~~~~~~~la~~L 86 (397)
T TIGR03246 8 QVMVPNYAPAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHI-GNGYTNEPVLRLAKKL 86 (397)
T ss_pred HHCCCCCCCCCCEEEEEECCEEEECCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHH
T ss_conf 744266999984289836499996987999994634876655789889999999999657777-6863488999999999
Q ss_pred HHHCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 97203786411102654202567777643001334-43321134320256653211234322333333222344542100
Q gi|254780488|r 93 IKIAPLGLQYVFFSDSGSTSIEVALKMALGFFNNN-NMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETI 171 (423)
Q Consensus 93 ~~~~p~~~~~v~f~~SGsEA~e~Alklar~~~~~~-~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i 171 (423)
T Consensus 87 ~~~~~--~~~v~f~~sGsEA~e~AlklAr~~~~~~~~~~k~~iis~~~~yHG~t~~~~s~~~~~~~~~~~~p~~~~~~~~ 164 (397)
T TIGR03246 87 VDATF--ADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHA 164 (397)
T ss_pred HHHCC--CCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 75148--7769972867789999999999999851799976899972786898564104689965567888999764204
Q ss_pred ECCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 01222222211110122127751134311655432112222333211001101112342000122124444555431122
Q gi|254780488|r 172 PFPHHNEEQKTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACN 251 (423)
Q Consensus 172 ~~~~~~~~~~~l~~l~~~~~~~~iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~ 251 (423)
T Consensus 165 ~~~d-------~~~~~~~~~-~~iaAvi~EP-v~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~ 235 (397)
T TIGR03246 165 PYND-------LAAAKALIS-DKTCAVIVEP-IQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYM 235 (397)
T ss_pred CCCC-------HHHHHHHHC-CCEEEEEEEC-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEECCCCCCCCCHHH
T ss_conf 5233-------999998528-8737999938-778889873888999999999998593586341220787777831432
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCCHH
Q ss_conf 33444420201344332223444332240132100012222222233333222210011000000000112332221002
Q gi|254780488|r 252 HADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIERIKNLE 331 (423)
Q Consensus 252 ~~gi~PDi~~~gK~l~gG~~pisav~~~~~i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g 331 (423)
T Consensus 236 ~~gv~PDiv~~gK~l~gG-~P~sav~~~~~i~~~~~~------~~h~~T~~gnpl~~aaala~L~~i~~e~l~~~~~~~g 308 (397)
T TIGR03246 236 HYGVTPDILTSAKALGGG-FPIGAMLTTTEIAAHLKV------GTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRH 308 (397)
T ss_pred CCCCCCCEEEECCCCCCC-CEEEEEEECHHHHHHCCC------CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 269899878874224688-404899744888865187------7738668829999999999999998547999999999
Q ss_pred HHHHHHHHHHHHCC-CEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEECC-CEEEECCCCCCCHHHHHH
Q ss_conf 67898999975189-7777745533999997068766641068999999997885999519-989956898787999999
Q gi|254780488|r 332 RMHADRLSLLKSNK-KFVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKKILIRPLG-HIMYLMPPYCITATDLDH 409 (423)
Q Consensus 332 ~~l~~~l~~L~~~~-~v~~vrG~Gl~~~iel~~~~~~~~~~~~~~l~~~l~~~Gil~~~~g-n~i~l~Ppl~it~~eId~ 409 (423)
T Consensus 309 ~~l~~~L~~l~~~~~~i~~VRG~Glm~giel~~~~~----~~a~~i~~~~~~~Gll~~~~g~n~lrl~PPL~it~eeid~ 384 (397)
T TIGR03246 309 DLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQ----GKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDE 384 (397)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCC----CHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCHHHHHH
T ss_conf 999999999874179877542243599999727863----3599999999978928930799979997885189999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999875
Q gi|254780488|r 410 IYNTINEAVDFL 421 (423)
Q Consensus 410 ~l~~l~~aL~~l 421 (423)
T Consensus 385 ~l~~l~~al~~v 396 (397)
T TIGR03246 385 GLARFERAIEQV 396 (397)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999986