HHsearch alignment for GI: 254780488 and conserved domain: TIGR03246

>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=100.00  E-value=0  Score=739.40  Aligned_cols=386  Identities=28%  Similarity=0.438  Sum_probs=350.3

Q ss_pred             HHHCCCCCCCCEEEEEEEEEEEEECCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHH
Q ss_conf             12276787786468862132899689876464102377536787899999999999985220102456897899999999
Q gi|254780488|r   13 PFVQHFCNPTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPAEQLARLL   92 (423)
Q Consensus        13 ~~~~~~~~~~p~~i~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~~~~~~~~~~~~~~la~~l   92 (423)
T Consensus         8 ~~~~~~y~~~P~vi~ra~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~-~~~~~~~~~~~la~~L   86 (397)
T TIGR03246         8 QVMVPNYAPAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHI-GNGYTNEPVLRLAKKL   86 (397)
T ss_pred             HHCCCCCCCCCCEEEEEECCEEEECCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHH
T ss_conf             744266999984289836499996987999994634876655789889999999999657777-6863488999999999


Q ss_pred             HHHCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             97203786411102654202567777643001334-43321134320256653211234322333333222344542100
Q gi|254780488|r   93 IKIAPLGLQYVFFSDSGSTSIEVALKMALGFFNNN-NMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETI  171 (423)
Q Consensus        93 ~~~~p~~~~~v~f~~SGsEA~e~Alklar~~~~~~-~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i  171 (423)
T Consensus        87 ~~~~~--~~~v~f~~sGsEA~e~AlklAr~~~~~~~~~~k~~iis~~~~yHG~t~~~~s~~~~~~~~~~~~p~~~~~~~~  164 (397)
T TIGR03246        87 VDATF--ADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHA  164 (397)
T ss_pred             HHHCC--CCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf             75148--7769972867789999999999999851799976899972786898564104689965567888999764204


Q ss_pred             ECCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf             01222222211110122127751134311655432112222333211001101112342000122124444555431122
Q gi|254780488|r  172 PFPHHNEEQKTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACN  251 (423)
Q Consensus       172 ~~~~~~~~~~~l~~l~~~~~~~~iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~  251 (423)
T Consensus       165 ~~~d-------~~~~~~~~~-~~iaAvi~EP-v~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~  235 (397)
T TIGR03246       165 PYND-------LAAAKALIS-DKTCAVIVEP-IQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYM  235 (397)
T ss_pred             CCCC-------HHHHHHHHC-CCEEEEEEEC-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEECCCCCCCCCHHH
T ss_conf             5233-------999998528-8737999938-778889873888999999999998593586341220787777831432


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCCHH
Q ss_conf             33444420201344332223444332240132100012222222233333222210011000000000112332221002
Q gi|254780488|r  252 HADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIERIKNLE  331 (423)
Q Consensus       252 ~~gi~PDi~~~gK~l~gG~~pisav~~~~~i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g  331 (423)
T Consensus       236 ~~gv~PDiv~~gK~l~gG-~P~sav~~~~~i~~~~~~------~~h~~T~~gnpl~~aaala~L~~i~~e~l~~~~~~~g  308 (397)
T TIGR03246       236 HYGVTPDILTSAKALGGG-FPIGAMLTTTEIAAHLKV------GTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRH  308 (397)
T ss_pred             CCCCCCCEEEECCCCCCC-CEEEEEEECHHHHHHCCC------CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             269899878874224688-404899744888865187------7738668829999999999999998547999999999


Q ss_pred             HHHHHHHHHHHHCC-CEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEECC-CEEEECCCCCCCHHHHHH
Q ss_conf             67898999975189-7777745533999997068766641068999999997885999519-989956898787999999
Q gi|254780488|r  332 RMHADRLSLLKSNK-KFVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKKILIRPLG-HIMYLMPPYCITATDLDH  409 (423)
Q Consensus       332 ~~l~~~l~~L~~~~-~v~~vrG~Gl~~~iel~~~~~~~~~~~~~~l~~~l~~~Gil~~~~g-n~i~l~Ppl~it~~eId~  409 (423)
T Consensus       309 ~~l~~~L~~l~~~~~~i~~VRG~Glm~giel~~~~~----~~a~~i~~~~~~~Gll~~~~g~n~lrl~PPL~it~eeid~  384 (397)
T TIGR03246       309 DLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQ----GKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDE  384 (397)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCC----CHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCHHHHHH
T ss_conf             999999999874179877542243599999727863----3599999999978928930799979997885189999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999875
Q gi|254780488|r  410 IYNTINEAVDFL  421 (423)
Q Consensus       410 ~l~~l~~aL~~l  421 (423)
T Consensus       385 ~l~~l~~al~~v  396 (397)
T TIGR03246       385 GLARFERAIEQV  396 (397)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999986