HHsearch alignment for GI: 254780488 and conserved domain: TIGR03392
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.59 E-value=1.5e-12 Score=104.81 Aligned_cols=339 Identities=14% Similarity=0.178 Sum_probs=185.1
Q ss_pred CCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHH-------HHHHHHHHHCCC-CCCCEEECCC
Q ss_conf 89876464102377536787899999999999985220102456897899-------999999972037-8641110265
Q gi|254780488|r 37 ENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPAE-------QLARLLIKIAPL-GLQYVFFSDS 108 (423)
Q Consensus 37 ~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~~~~~~~~~~~~~-------~la~~l~~~~p~-~~~~v~f~~S 108 (423)
T Consensus 14 ~~~~iYlDnAat------t~~p~~V~~a~~~~~~~~~-~n~~~s~~~~~~~~~~~~e~aR~~iA~~lga~~~~~Iifts~ 86 (398)
T TIGR03392 14 QDGTVYLDSAAT------ALKPQAVIDATQQFYRLSS-GTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRG 86 (398)
T ss_pred CCCEEEEECCCC------CCCCHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 999088678632------6898999999999998634-888751439999999999999999999709599897999587
Q ss_pred CCCHHHHHHHH-HHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHH
Q ss_conf 42025677776-43001334433211343202566532112343223333332223445421000122222221111012
Q gi|254780488|r 109 GSTSIEVALKM-ALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLE 187 (423)
Q Consensus 109 GsEA~e~Alkl-ar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~ 187 (423)
T Consensus 87 ~Te~~n~~~~~~~~~~~----~~gd~ii~s~~EH~s~~--------~pw~~-~~~~~g~~v~~~~~~--~~~~~d~~~l~ 151 (398)
T TIGR03392 87 TTESINLVAQSYARPRL----QPGDEIIVSEAEHHANL--------IPWLM-VAQQTGAKVVKLPIG--ADLLPDIRQLP 151 (398)
T ss_pred HHHHHHHHHHHHHHHHC----CCCCEEEEECCCCCCCH--------HHHHH-HHHHCCCEEEEECCC--CCCCCCHHHHH
T ss_conf 79999989877688723----99898998244003423--------89998-876448527996147--88987999999
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECC--CC
Q ss_conf 2127751134311655432112222333211001101112342000122124444555431122334444202013--44
Q gi|254780488|r 188 KHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLS--KG 265 (423)
Q Consensus 188 ~~~~~~~iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~gi~PDi~~~g--K~ 265 (423)
T Consensus 152 ~~i~~~T-~lVsi-~~vsn~~G~i~p----i~~I~~~~~~~g~~~~vDa~Q~-~g~~--~idv~~~~--~D~~~~S~hK- 219 (398)
T TIGR03392 152 ELLTPRT-RILAL-GQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG--PPDVQALD--IDFYAFSGHK- 219 (398)
T ss_pred HHCCCCC-CEEEE-ECCCCCCCCCCC----HHHHHHHHHHCCCEEEEECCCC-CCCC--CCCCCCCC--CCEEEEECCC-
T ss_conf 8525787-08998-255567888587----9999999986597478633411-5620--33410267--8779986553-
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCC---CCCC-CC-------------CCCCCCCCCCCCCHHHHHCCHHHCCCCC---CCC
Q ss_conf 33222344433224013210001---2222-22-------------2233333222210011000000000112---332
Q gi|254780488|r 266 ITGGALPLAATLCSEEIFDSHLS---SDKK-KT-------------FFHSSSYTANPIACAAALANLQIWEKEP---VIE 325 (423)
Q Consensus 266 l~gG~~pisav~~~~~i~~~~~~---~~~~-~~-------------~~h~~T~~gnpl~~aaa~a~L~~i~~~~---l~~ 325 (423)
T Consensus 220 l~-GP~G~G~Ly~~~~~~~~l~p~~~Gg~~~~~~~~~~~~~~~~~~r~e~GT~--n~~~i~gl~~al~~l~~~~~~~~~~ 296 (398)
T TIGR03392 220 LY-GPTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTP--NIAGVIGLSAALEWLTDIDIAAAEA 296 (398)
T ss_pred CC-CCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCC--CHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 56-99841899984114743797357997344334777644555021146885--4878999999999999649999999
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEECCCCC-EEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEECC-------------
Q ss_conf 221002678989999751897777745533-999997068766641068999999997885999519-------------
Q gi|254780488|r 326 RIKNLERMHADRLSLLKSNKKFVNIRQMGT-IVALDFNVQNKGYFFDKNAKLKNFFREKKILIRPLG------------- 391 (423)
Q Consensus 326 ~~~~~g~~l~~~l~~L~~~~~v~~vrG~Gl-~~~iel~~~~~~~~~~~~~~l~~~l~~~Gil~~~~g------------- 391 (423)
T Consensus 297 ~~~~L~~~~~~~l~~l---~g~~~~~~~~~~~~~f~~~~~-------~~~~l~~~L~~~gi~v~~G~~ca~~~l~a~g~~ 366 (398)
T TIGR03392 297 WSVSLADLAEERLAQL---PGFRSFRCPGSSLLAFDFAGV-------HHSDLAALLAESGIALRAGQHCAQPLMAALGVS 366 (398)
T ss_pred HHHHHHHHHHHHHHHC---CCCCCCCCCCCCEEEEEECCC-------CHHHHHHHHHHCCCEEECCCCCCHHHHHHHCCC
T ss_conf 9999999999998638---996445799996799987993-------999999999778979966866548999986899
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 9899568987879999999999999998755
Q gi|254780488|r 392 HIMYLMPPYCITATDLDHIYNTINEAVDFLE 422 (423)
Q Consensus 392 n~i~l~Ppl~it~~eId~~l~~l~~aL~~le 422 (423)
T Consensus 367 g~iRvS~~~ynT~edId~li~aL~~~l~~l~ 397 (398)
T TIGR03392 367 GTLRASFAPYNTQQDVDALVDAVGAALELLN 397 (398)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 8799967888899999999999999999843