HHsearch alignment for GI: 254780488 and conserved domain: TIGR03402
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.36 E-value=3.1e-11 Score=96.05 Aligned_cols=332 Identities=16% Similarity=0.144 Sum_probs=171.2
Q ss_pred EEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHHHH-------HHHHHHHCCCCCCCEEECCCCCCHHH
Q ss_conf 46410237753678789999999999998522010245689789999-------99999720378641110265420256
Q gi|254780488|r 42 IIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPAEQL-------ARLLIKIAPLGLQYVFFSDSGSTSIE 114 (423)
Q Consensus 42 ~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~~~~~~~~~~~~~~l-------a~~l~~~~p~~~~~v~f~~SGsEA~e 114 (423)
T Consensus 2 YlD~AAt------t~~~~~V~~a~~~~~~~~~--~np~~~h~~~~~a~~~~e~aR~~iA~~lga~~~eIvFt~~~T~a~n 73 (379)
T TIGR03402 2 YLDNNAT------TRVDPEVLEAMLPYFTEYF--GNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDN 73 (379)
T ss_pred CCCCCCC------CCCCHHHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH
T ss_conf 4417665------8899999999999999658--9977658999999999999999999982999673999288799999
Q ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCCCC
Q ss_conf 77776430013344332113432025665321123432233333322234454210001222222211110122127751
Q gi|254780488|r 115 VALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQK 194 (423)
Q Consensus 115 ~Alklar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~ 194 (423)
T Consensus 74 ~~i~~~~~~~----~~~d~Ii~s~~eH~a-~~-------~~~~~--l~~~g~~v~~~~~~~~--g~id~~~l~~~l~~~T 137 (379)
T TIGR03402 74 TAIKSALAAQ----PEKRHIITTAVEHPA-VL-------SLCQH--LEKQGYKVTYLPVDEE--GRLDLEELRAAITDDT 137 (379)
T ss_pred HHHHHHHHHC----CCCCEEEEECCHHHH-HH-------HHHHH--HHHCCCEEEEEECCCC--CCCCHHHHHHHHCCCC
T ss_conf 9999999867----999999980131045-66-------79999--9965988999703789--8264266788726786
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCC
Q ss_conf 134311655432112222333211001101112342000122124444555431122334444202013--443322234
Q gi|254780488|r 195 IAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLS--KGITGGALP 272 (423)
Q Consensus 195 iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~gi~PDi~~~g--K~l~gG~~p 272 (423)
T Consensus 138 -~lvs~~~-~sn~tG~i~p----v~~I~~~~~~~g~~~~vDa~Q~-~g~~--pidv~~~--~~D~~~~S~hK-~-~GP~G 204 (379)
T TIGR03402 138 -ALVSVMW-ANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKI--PIDLKEM--NIDMLSLSGHK-L-HGPKG 204 (379)
T ss_pred -EEEEEEC-CCCCCCHHHH----HHHHHHHHHHCCCEEEEECCCC-CCCC--CCCHHHH--CCCCEECCHHH-C-CCCCC
T ss_conf -2899612-5788870178----9999999976398899453112-4664--6403441--57721202111-3-68872
Q ss_pred CCCCCCCHHH-HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCC--CCCCCCCCCHHHHHHHHHHHHHHCCCEE-
Q ss_conf 4433224013-21000122222222333332222100110000000001--1233222100267898999975189777-
Q gi|254780488|r 273 LAATLCSEEI-FDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEK--EPVIERIKNLERMHADRLSLLKSNKKFV- 348 (423)
Q Consensus 273 isav~~~~~i-~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l~~L~~~~~v~- 348 (423)
T Consensus 205 ~G~Ly~r~~~~~~P~~~Gg~~e~~~~~GT~--n~~~i~gl~~a~~~~~~~~~~~~~~~~~l~~~l~~~l--l~~~~~~~i 280 (379)
T TIGR03402 205 VGALYIRKGTRFRPLLRGGHQERGRRAGTE--NVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGL--LARIPDARL 280 (379)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCEEE
T ss_conf 599998267666876788887777678971--2999999999999999759999999999999999999--850898275
Q ss_pred --E--ECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEC------------------------CCEEEECCCC
Q ss_conf --7--74553399999706876664106899999999788599951------------------------9989956898
Q gi|254780488|r 349 --N--IRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKKILIRPL------------------------GHIMYLMPPY 400 (423)
Q Consensus 349 --~--vrG~Gl~~~iel~~~~~~~~~~~~~~l~~~l~~~Gil~~~~------------------------gn~i~l~Ppl 400 (423)
T Consensus 281 ~g~~~~r~p~~-~~~~~--~~~-----~~~~i~~~L~~~gI~v~~G~~Ca~~~~~ps~vL~a~g~~~~~~~g~iRvS~~~ 352 (379)
T TIGR03402 281 NGDPTKRLPNT-VNISF--EYI-----EGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSR 352 (379)
T ss_pred CCCHHHCCCCC-EEECC--CCC-----CHHHHHHHHCCCCEEEECCHHCCCCCCCHHHHHHHCCCCHHHCCCEEEEECCC
T ss_conf 47866648873-03236--998-----99999998451892997503215999862499997599833339569997389
Q ss_pred CCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 7879999999999999998755
Q gi|254780488|r 401 CITATDLDHIYNTINEAVDFLE 422 (423)
Q Consensus 401 ~it~~eId~~l~~l~~aL~~le 422 (423)
T Consensus 353 ynT~edId~li~aL~~iv~~lr 374 (379)
T TIGR03402 353 YNTEEDIDYVLEVLPPIIARLR 374 (379)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999998