HHsearch alignment for GI: 254780488 and conserved domain: TIGR03537
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.64 E-value=3.7e-14 Score=115.79 Aligned_cols=333 Identities=14% Similarity=0.103 Sum_probs=179.8
Q ss_pred EEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCC--C-CEEECCCCCCHHHHHH
Q ss_conf 646410237753678789999999999998522010245689789999999997203786--4-1110265420256777
Q gi|254780488|r 41 KIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPAEQLARLLIKIAPLGL--Q-YVFFSDSGSTSIEVAL 117 (423)
Q Consensus 41 ~~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~--~-~v~f~~SGsEA~e~Al 117 (423)
T Consensus 1 ~ii~l~~g~---P~~p~P~~i~~al~~a~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~d~~I~~t~Ga~~al~~~~ 77 (350)
T TIGR03537 1 RLFDFGTGD---PKEPTPPIIRNALKNAVPEVSQYPSAAGTKALRDAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP 77 (350)
T ss_pred CEEECCCCC---CCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 957876989---99998799999999960215899898474999999999999986899897877998788389999999
Q ss_pred HHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCCCCEEE
Q ss_conf 76430013344332113432025665321123432233333322234454210001222222211110122127751134
Q gi|254780488|r 118 KMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAA 197 (423)
Q Consensus 118 klar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~iaa 197 (423)
T Consensus 78 ~~~~~----~gd~~~~Vlv~~P~y~~y~~~~~~~g-------------~~~~~v~l~~~~g~~~d~e~l~~~~~~~~~~i 140 (350)
T TIGR03537 78 LVFID----PEEDRRRVIFGTPGYPVYERGALFAG-------------GEPTPVKLKEEDGFLLRLEKVDKEILKETKIV 140 (350)
T ss_pred HHHCC----CCCCCCEEEEECCCCCCHHHHHHHCC-------------CEEEEEECCCCCCCCCCHHHHHHHCCCCCEEE
T ss_conf 99738----88778769994698730699999769-------------98999753554488779999997466687199
Q ss_pred EECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC----EEECCCCCCCCCCCC
Q ss_conf 3116554321122223332110011011123420001221244445554311223344442----020134433222344
Q gi|254780488|r 198 FLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPD----ILCLSKGITGGALPL 273 (423)
Q Consensus 198 vi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~gi~PD----i~~~gK~l~gG~~pi 273 (423)
T Consensus 141 ~l~nP--~NPTG~v-~s~~~l~~l~~~a~~~~~~vi~DE~Y~~l~~~~~~~~~--~~~~~~~~i~~~S~SK~~~~pGlR~ 215 (350)
T TIGR03537 141 WINYP--HNPTGAV-APRSYLEETIAICQEHNIILCSDECYTEIYFGEPPHSA--LEVGMENVLAFHSLSKRSGMTGYRS 215 (350)
T ss_pred EECCC--CCCCCCC-CCHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCH--HHHCCCCEEEEECCCCCCCCCCCEE
T ss_conf 98999--8983647-69999999998632369079843122455348998775--5634687799966754504677559
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCCHHHHHHHHH-HHHHHCCCEEEECC
Q ss_conf 43322401321000122222222333332222100110000000001123322210026789899-99751897777745
Q gi|254780488|r 274 AATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIERIKNLERMHADRL-SLLKSNKKFVNIRQ 352 (423)
Q Consensus 274 sav~~~~~i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l-~~L~~~~~v~~vrG 352 (423)
T Consensus 216 G~~~~~~~li~~~~~~~--~~~----~~~~~~~~q~a~~~~~---~~~~~~~~~~~~~~~~r~~~~~~l~~-~g~~~~~p 285 (350)
T TIGR03537 216 GFVAGDEKLISFLKKLR--ANF----GVASPDFVQAAAKAAW---SDDSHVIERRKIFRRKRDLFLEFFNK-KGLEYLYP 285 (350)
T ss_pred EEEECCHHHHHHHHHHH--HHC----CCCHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEECC
T ss_conf 99978999999999986--206----7772899999999995---68099999999999999999999864-89888268
Q ss_pred CCCE-EEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEECC-------CEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 5339-99997068766641068999999997885999519-------9899568987879999999999999
Q gi|254780488|r 353 MGTI-VALDFNVQNKGYFFDKNAKLKNFFREKKILIRPLG-------HIMYLMPPYCITATDLDHIYNTINE 416 (423)
Q Consensus 353 ~Gl~-~~iel~~~~~~~~~~~~~~l~~~l~~~Gil~~~~g-------n~i~l~Ppl~it~~eId~~l~~l~~ 416 (423)
T Consensus 286 ~g~~~~w~~~--~~----~~~~~~~~~~ll~~gV~v~pG~~Fg~~~~~~~Rl~--~~~~~e~l~ealrrl~~ 349 (350)
T TIGR03537 286 DATFYLWVKV--PN----GISSKDYALRLLENGIVVAPGENFGSGEEGYVRVA--LVPTLEECEEALRIWES 349 (350)
T ss_pred CCEEEEEEEC--CC----CCCHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEE--EECCHHHHHHHHHHHHC
T ss_conf 8225998979--99----98999999999979989976731189999869999--72899999999999861