HHsearch alignment for GI: 254780488 and conserved domain: TIGR03539
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.39 E-value=5.4e-11 Score=94.41 Aligned_cols=319 Identities=14% Similarity=0.102 Sum_probs=171.3
Q ss_pred CCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCC---CCCCCEEECCCCCCHH
Q ss_conf 8987646410237753678789999999999998522010245689789999999997203---7864111026542025
Q gi|254780488|r 37 ENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPAEQLARLLIKIAP---LGLQYVFFSDSGSTSI 113 (423)
Q Consensus 37 ~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p---~~~~~v~f~~SGsEA~ 113 (423)
T Consensus 18 ~~~~~vI~L~iG~---Pd~p~p~~i~~a~~~a~~~~~Y-~~~~G~~eLReaia~~~~~~~g~~~~~~~~I~vt~G~~~al 93 (357)
T TIGR03539 18 SHPDGIVDLSVGT---PVDPVPPLIRAALAAAADAPGY-PQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELV 93 (357)
T ss_pred HCCCCEEECCCCC---CCCCCCHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHH
T ss_conf 6899928887999---9999899999999971247998-99847799999999999997199979957599868879999
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCCC
Q ss_conf 67777643001334433211343202566532112343223333332223445421000122222221111012212775
Q gi|254780488|r 114 EVALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQ 193 (423)
Q Consensus 114 e~Alklar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~ 193 (423)
T Consensus 94 ~~l~~~l~------~~pGD~Vli~~P~y~~y~~~~~~~g~~---------------~v~~d-------~~~~----~~~~ 141 (357)
T TIGR03539 94 AWLPTLLG------LGPGDTVVIPELAYPTYEVGALLAGAT---------------PVAAD-------DPTE----LDPV 141 (357)
T ss_pred HHHHHHHH------CCCCCEEEECCCCCCCHHHHHHHCCCE---------------EEECC-------CHHH----CCCC
T ss_conf 99999970------799998997888770089999985998---------------98238-------8666----7977
Q ss_pred CEEEEEC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCC----CCCCCCE---EECCCC
Q ss_conf 1134311-6554321122223332110011011123420001221244445554311223----3444420---201344
Q gi|254780488|r 194 KIAAFLV-EPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNH----ADITPDI---LCLSKG 265 (423)
Q Consensus 194 ~iaavi~-EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~----~gi~PDi---~~~gK~ 265 (423)
T Consensus 142 ~~k~i~l~~P--~NPTG~-v~s~~~l~~l~~~a~~~~i~visDEiY~~~~~~~~~~s~l~~~~~~~~~~~~i~~~S~SK~ 218 (357)
T TIGR03539 142 GPDLIWLNSP--GNPTGR-VLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKR 218 (357)
T ss_pred CCEEEEECCC--CCCCHH-CCCHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEEECCCC
T ss_conf 8549998999--896232-0828899999873205558995233247653589884302864537675767999615310
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCC-CHHHHHHHHH-HHHHH
Q ss_conf 332223444332240132100012222222233333222210011000000000112332221-0026789899-99751
Q gi|254780488|r 266 ITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIERIK-NLERMHADRL-SLLKS 343 (423)
Q Consensus 266 l~gG~~pisav~~~~~i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~-~~g~~l~~~l-~~L~~ 343 (423)
T Consensus 219 ~~~~G~RiG~~~~~~~li~~l~~~~~-----~~~~~~~~~~-q~a~~~al~---~~~~~~~~~~~~~~r-r~~l~~~L~~ 288 (357)
T TIGR03539 219 SNLAGYRAGFVAGDPALVAELLTVRK-----HAGLMVPAPV-QAAMVAALG---DDGHVAEQKARYAAR-RAQLKPALEK 288 (357)
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHH-----HCCCCCCHHH-HHHHHHHHC---CCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 04556128999679999999999998-----5677788999-999999956---927899999999999-9999999985
Q ss_pred CCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEECC-------CEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 897777745533999997068766641068999999997885999519-------98995689878799999999999
Q gi|254780488|r 344 NKKFVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKKILIRPLG-------HIMYLMPPYCITATDLDHIYNTI 414 (423)
Q Consensus 344 ~~~v~~vrG~Gl~~~iel~~~~~~~~~~~~~~l~~~l~~~Gil~~~~g-------n~i~l~Ppl~it~~eId~~l~~l 414 (423)
T Consensus 289 -~g~~~~~p~g~~y~~~--~~-----~~~~~~~~~~l~e~gV~v~PG~~Fg~~g~~~vRis~--~~~~e~l~eal~Rl 356 (357)
T TIGR03539 289 -AGFRIDHSEAGLYLWA--TR-----GEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVAL--TATDERIAAAVARL 356 (357)
T ss_pred -CCCEECCCCEEEEEEE--EC-----CCCHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEE--CCCHHHHHHHHHHC
T ss_conf -7977626880699987--58-----999999999999699899478744789999799997--29999999999857