HHsearch alignment for GI: 254780488 and conserved domain: TIGR03539

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.39  E-value=5.4e-11  Score=94.41  Aligned_cols=319  Identities=14%  Similarity=0.102  Sum_probs=171.3

Q ss_pred             CCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCC---CCCCCEEECCCCCCHH
Q ss_conf             8987646410237753678789999999999998522010245689789999999997203---7864111026542025
Q gi|254780488|r   37 ENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPAEQLARLLIKIAP---LGLQYVFFSDSGSTSI  113 (423)
Q Consensus        37 ~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p---~~~~~v~f~~SGsEA~  113 (423)
T Consensus        18 ~~~~~vI~L~iG~---Pd~p~p~~i~~a~~~a~~~~~Y-~~~~G~~eLReaia~~~~~~~g~~~~~~~~I~vt~G~~~al   93 (357)
T TIGR03539        18 SHPDGIVDLSVGT---PVDPVPPLIRAALAAAADAPGY-PQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELV   93 (357)
T ss_pred             HCCCCEEECCCCC---CCCCCCHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHH
T ss_conf             6899928887999---9999899999999971247998-99847799999999999997199979957599868879999


Q ss_pred             HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCCC
Q ss_conf             67777643001334433211343202566532112343223333332223445421000122222221111012212775
Q gi|254780488|r  114 EVALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQ  193 (423)
Q Consensus       114 e~Alklar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~  193 (423)
T Consensus        94 ~~l~~~l~------~~pGD~Vli~~P~y~~y~~~~~~~g~~---------------~v~~d-------~~~~----~~~~  141 (357)
T TIGR03539        94 AWLPTLLG------LGPGDTVVIPELAYPTYEVGALLAGAT---------------PVAAD-------DPTE----LDPV  141 (357)
T ss_pred             HHHHHHHH------CCCCCEEEECCCCCCCHHHHHHHCCCE---------------EEECC-------CHHH----CCCC
T ss_conf             99999970------799998997888770089999985998---------------98238-------8666----7977


Q ss_pred             CEEEEEC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCC----CCCCCCE---EECCCC
Q ss_conf             1134311-6554321122223332110011011123420001221244445554311223----3444420---201344
Q gi|254780488|r  194 KIAAFLV-EPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNH----ADITPDI---LCLSKG  265 (423)
Q Consensus       194 ~iaavi~-EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~~~----~gi~PDi---~~~gK~  265 (423)
T Consensus       142 ~~k~i~l~~P--~NPTG~-v~s~~~l~~l~~~a~~~~i~visDEiY~~~~~~~~~~s~l~~~~~~~~~~~~i~~~S~SK~  218 (357)
T TIGR03539       142 GPDLIWLNSP--GNPTGR-VLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKR  218 (357)
T ss_pred             CCEEEEECCC--CCCCHH-CCCHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEEECCCC
T ss_conf             8549998999--896232-0828899999873205558995233247653589884302864537675767999615310


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCC-CHHHHHHHHH-HHHHH
Q ss_conf             332223444332240132100012222222233333222210011000000000112332221-0026789899-99751
Q gi|254780488|r  266 ITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIERIK-NLERMHADRL-SLLKS  343 (423)
Q Consensus       266 l~gG~~pisav~~~~~i~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~-~~g~~l~~~l-~~L~~  343 (423)
T Consensus       219 ~~~~G~RiG~~~~~~~li~~l~~~~~-----~~~~~~~~~~-q~a~~~al~---~~~~~~~~~~~~~~r-r~~l~~~L~~  288 (357)
T TIGR03539       219 SNLAGYRAGFVAGDPALVAELLTVRK-----HAGLMVPAPV-QAAMVAALG---DDGHVAEQKARYAAR-RAQLKPALEK  288 (357)
T ss_pred             CCCCCCEEEEEECCHHHHHHHHHHHH-----HCCCCCCHHH-HHHHHHHHC---CCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf             04556128999679999999999998-----5677788999-999999956---927899999999999-9999999985


Q ss_pred             CCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEECC-------CEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             897777745533999997068766641068999999997885999519-------98995689878799999999999
Q gi|254780488|r  344 NKKFVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKKILIRPLG-------HIMYLMPPYCITATDLDHIYNTI  414 (423)
Q Consensus       344 ~~~v~~vrG~Gl~~~iel~~~~~~~~~~~~~~l~~~l~~~Gil~~~~g-------n~i~l~Ppl~it~~eId~~l~~l  414 (423)
T Consensus       289 -~g~~~~~p~g~~y~~~--~~-----~~~~~~~~~~l~e~gV~v~PG~~Fg~~g~~~vRis~--~~~~e~l~eal~Rl  356 (357)
T TIGR03539       289 -AGFRIDHSEAGLYLWA--TR-----GEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVAL--TATDERIAAAVARL  356 (357)
T ss_pred             -CCCEECCCCEEEEEEE--EC-----CCCHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEE--CCCHHHHHHHHHHC
T ss_conf             -7977626880699987--58-----999999999999699899478744789999799997--29999999999857