HHsearch alignment for GI: 254780488 and conserved domain: cd01494
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.33 E-value=2.5e-12 Score=103.44 Aligned_cols=165 Identities=22% Similarity=0.281 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999972037864111026542025677776430013344332113432025665321123432233333322234
Q gi|254780488|r 85 AEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPL 164 (423)
Q Consensus 85 ~~~la~~l~~~~p~~~~~v~f~~SGsEA~e~Alklar~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~ 164 (423)
T Consensus 2 ~~e~e~~la~~~~~~~~~~i~~~sgt~A~~~~~~~l~-------~~gd~vi~~~~~~~s~~~~~~~~~g----------- 63 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL-------GPGDEVIVDANGHGSRYWVAAELAG----------- 63 (170)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHH-------CCCCEEEECCCCHHHHHHHHHHHCC-----------
T ss_conf 8999999999848998989995669999999999972-------7999999826843756899998659-----------
Q ss_pred CCCCCCEECCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCC
Q ss_conf 45421000122222221111012212775113431165543211222233321100110111234200012212444455
Q gi|254780488|r 165 LFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRT 244 (423)
Q Consensus 165 ~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~iaavi~EP~i~~~gG~~~~~~~~l~~lr~lc~~~g~llI~DEV~tG~GRt 244 (423)
T Consensus 64 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~g~~~~----l~~I~~la~~~gi~livD~a~~~-g~~ 136 (170)
T cd01494 64 -AKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITP-NTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAG-GAS 136 (170)
T ss_pred -CEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEEE-ECCCCCCCCC----HHHHHHHHHHCCCEEEEECCCHH-CCC
T ss_conf -8778723477875546899999985599963688774-0147873201----99997356207969999468432-160
Q ss_pred C-CCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCCC
Q ss_conf 5-431122334444202013--443322234443322
Q gi|254780488|r 245 G-KIFACNHADITPDILCLS--KGITGGALPLAATLC 278 (423)
Q Consensus 245 G-~~~a~~~~gi~PDi~~~g--K~l~gG~~pisav~~ 278 (423)
T Consensus 137 ~~~~~~~~--~~~~D~~~~s~hK~lg~--~g~g~l~~ 169 (170)
T cd01494 137 PAPGVLIP--EGGADVVTFSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred CCCCCCCC--CCCCEEEEECCCCCCCC--CCEEEEEE
T ss_conf 66666777--78985999898666789--85799998