RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780488|ref|YP_003064901.1|
adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus
Liberibacter asiaticus str. psy62]
(423 letters)
>gnl|CDD|30510 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 454 bits (1169), Expect = e-128
Identities = 175/432 (40%), Positives = 252/432 (58%), Gaps = 24/432 (5%)
Query: 10 IWHPFVQH-FCNPTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMNAIRSA 68
+WHPF Q + I++ EG YL D + + +D +S W + HGH P I AI+
Sbjct: 13 LWHPFTQMRDPLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQ 72
Query: 69 SENYDQIIFSEYTHEPAEQLARLLIKIAPLG-LQYVFFSDSGSTSIEVALKMALGFFNNN 127
+ ++F +THEPA +LA L ++AP G L +VFF+DSGS ++E ALKMAL ++
Sbjct: 73 LDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRAR 132
Query: 128 NMP-RNKIVVMEHGYHGDTIGSMSVS-MRGAFNNSYEPLLFDVETIPFPHH--------- 176
P R K + +GYHGDT+G+MSV + Y+PLL +V +P P+
Sbjct: 133 GQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEG 192
Query: 177 -NEEQKTLDDLEKHC---STQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLL 232
E + D+LE + IAAF+VEP++ GAGGM P LK I KY LL
Sbjct: 193 DEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILL 252
Query: 233 IADEVMTGWGRTGKIFACNHADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKK 292
IADEV TG+GRTGK+FAC HA I PDILCL+KG+TGG LPL+A L S+ I+++ S
Sbjct: 253 IADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEA-FSDGDA 311
Query: 293 KTFFHSSSYTANPIACAAALANLQIWEKEPVIERIKNLERMHADRL-SLLKSNKKFVNIR 351
F H +Y+ NP+ACAAALANL I E+E ++ER+ + L + L + ++R
Sbjct: 312 GAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVR 371
Query: 352 QMGTIVALDFNVQNKG----YFFDKNAKLKNFFREKKILIRPLGHIMYLMPPYCITATDL 407
+G I A++ V +K + A+++ E+ +LIRPLG ++YLMPP IT ++
Sbjct: 372 GLGLIGAIEL-VADKATKTPFEARVGARVRAAALERGLLIRPLGDVIYLMPPLIITREEI 430
Query: 408 DHIYNTINEAVD 419
D + + + EA+D
Sbjct: 431 DELVDALREALD 442
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation..
Length = 413
Score = 366 bits (941), Expect = e-102
Identities = 139/419 (33%), Positives = 221/419 (52%), Gaps = 24/419 (5%)
Query: 10 IWHPFVQHFCNPTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMNAIRSAS 69
+WH + + EG+YL D + ++ +D +S V+ GH HP ++ A++
Sbjct: 9 LWHGYTVRPYPLVIVR---AEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQL 65
Query: 70 ENYDQIIFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGFFNNNNM 129
+ +EPA +LA LL+ + P GL VFF +SG+ ++E ALK+A +
Sbjct: 66 AKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTG---- 121
Query: 130 PRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPH----HNEEQKTLDD 185
R KI+ E YHG T+G++S++ + + PLL V +P+P+ E L+
Sbjct: 122 -RKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEA 180
Query: 186 LEKHCSTQ--KIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGR 243
LE+ ++AA +VEP I G GG+ P LK + +K+ LLIADEV TG+GR
Sbjct: 181 LEEALEEHPEEVAAVIVEP-IQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGR 239
Query: 244 TGKIFACNHADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTA 303
TGK+FA H + PDI+ L KG+ GG LPL A L EEI D+ H ++
Sbjct: 240 TGKMFAFEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAF----PAGPGLHGGTFGG 294
Query: 304 NPIACAAALANLQIWEKEPVIERIKNLERMHADRLSLLKSNKKFV-NIRQMGTIVALDF- 361
NP+ACAAALA L++ E+E ++E L +RL L V ++R G ++ ++
Sbjct: 295 NPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELV 354
Query: 362 -NVQNKGYFFDKNAKLKNFFREKKILIRPLG-HIMYLMPPYCITATDLDHIYNTINEAV 418
+ K + AK+ E+ +L+RP G +++ L+PP IT ++D + ++EA+
Sbjct: 355 KDRATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL 413
>gnl|CDD|143959 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 297 bits (762), Expect = 4e-81
Identities = 125/345 (36%), Positives = 182/345 (52%), Gaps = 17/345 (4%)
Query: 26 IIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPA 85
I K +G +L D + + +D +S V+ GH HP I+ A++ ++ F +T EPA
Sbjct: 2 ITKAKGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEPA 61
Query: 86 EQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGFFNNNNMP-RNKIVVMEHGYHGD 144
QLA L ++ P GL VFF +SGS + E A+K+A + + KI+ G+HG
Sbjct: 62 LQLAEKLAQLTPGGLDRVFFMNSGSEANETAIKLARQYAKKKGATGKTKIIAFSGGFHGR 121
Query: 145 TIGSMSVSMRGAFNNSYEPLLFDVETIPFPHH---NEEQKTLD---DLEKHCSTQKIAAF 198
T+G++SV+ + + P L V +P+P EE D L K IAA
Sbjct: 122 TLGALSVTGSSGYKKGFGPSLPGVYFLPYPDLEAAEEELACADEALRLIKAVHDDNIAAV 181
Query: 199 LVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPD 258
+VEP I G GG+ P L I KK+ LLIADEV TG+GRTGK+FAC H +TPD
Sbjct: 182 IVEP-IQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHYGVTPD 240
Query: 259 ILCLSKGITGGALPLAATLCSEEIFDS-HLSSDKKKTFFHSSSYTANPIACAAALANLQI 317
I+ L+K +TGG LPL+A L + EI + H S H ++ NP+ACAAALA L I
Sbjct: 241 IMTLAKALTGG-LPLSAVLATAEIMQAFHPGS-------HGGTFGGNPLACAAALAVLDI 292
Query: 318 WEKEPVIERIKNLERMHADRLSLLKSNKKFVNIRQMGTIVALDFN 362
E E +++ + L L+ ++R G ++A++
Sbjct: 293 IEDENLLQNAQEKGDYLRKGLLALQDKPVIGDVRGRGLMIAIEIV 337
>gnl|CDD|34597 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 245 bits (627), Expect = 2e-65
Identities = 115/402 (28%), Positives = 201/402 (50%), Gaps = 28/402 (6%)
Query: 20 NPTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSE 79
I++ EG+Y+ D+ + +D + V GH HP ++ A++ +E + +
Sbjct: 22 GRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLW-HVSNL 80
Query: 80 YTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGFFNNNNMPRNKIVVMEH 139
+ +EP +LA L++++P VFF +SG+ + E ALK+A + + ++KI+ E+
Sbjct: 81 FYNEPQAELAEKLVELSP-FADRVFFCNSGAEANEAALKLARKYTGDPE--KSKIIAFEN 137
Query: 140 GYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFL 199
+HG T+G++S + + + + PLL +PF + +D+ AA +
Sbjct: 138 SFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDE--------DTAAVI 189
Query: 200 VEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDI 259
VEP I G GG+ P LK + ++ LLI DEV TG GRTGK+FA H + PDI
Sbjct: 190 VEP-IQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDI 248
Query: 260 LCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWE 319
L L+K + GG P+ A L +EEI + D H S++ NP+ACA ALA L++
Sbjct: 249 LTLAKAL-GGGFPIGAMLATEEIASAFTPGD------HGSTFGGNPLACAVALAVLEVLL 301
Query: 320 KEPVIERIKNLERMHADRL-SLLKSNKKFVNIRQMGTIVALDFNVQNKGYFFDKNAKLKN 378
+E ++E ++ RL L + +R G ++ ++ + +
Sbjct: 302 EEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPYRARDIVRAL---- 357
Query: 379 FFREKKILIRPLG-HIMYLMPPYCITATDLDHIYNTINEAVD 419
RE+ +L+ P G +++ +PP IT ++D + + A+
Sbjct: 358 --REEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALERALA 397
>gnl|CDD|30509 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 243 bits (621), Expect = 8e-65
Identities = 122/420 (29%), Positives = 216/420 (51%), Gaps = 37/420 (8%)
Query: 26 IIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPA 85
I++ EG+YL D + ++ +D +S V+ GH HP ++ A++ + + +EP
Sbjct: 42 IVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPY 101
Query: 86 EQLARLLIKIAP-LGLQYVFFSDSGSTSIEVALKMALGFFNNNNMPRNKIVVMEHGYHGD 144
+LA L +AP GL+ VFF +SG+ ++E A+K+A + R ++ + +HG
Sbjct: 102 VELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTG-----RPGVIAFDGAFHGR 156
Query: 145 TIGSMSVS-MRGAFNNSYEPLLFDVETIPFPHH----------NEEQKTLDDLEKH---- 189
T+G++S++ + + + PL V +P+P+ L+ +E+
Sbjct: 157 TLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDL 216
Query: 190 -CSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIF 248
+++AA ++EP I G GG+ LK ++ +++ LLIADEV TG+GRTGK+F
Sbjct: 217 EVGPEEVAAIIIEP-IQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMF 275
Query: 249 ACNHADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIAC 308
A H + PDI+ L+K + GG LPL+A + EI D H ++ NP+AC
Sbjct: 276 AFEHFGVEPDIVTLAKSLGGG-LPLSAVVGRAEIMDWPPGG-------HGGTFGGNPVAC 327
Query: 309 AAALANLQIWEKEPVIERIKNLERMHADRLSLLKSNKKFV-NIRQMGTIVALDFN--VQN 365
AAALA L + E+E ++ER L DRL L+ + ++R +G ++ ++
Sbjct: 328 AAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDT 387
Query: 366 KGYFFDKNAKLKNFFREKKILI---RPLGHIMYLMPPYCITATDLDHIYNTINEAVDFLE 422
K + AK+ E+ +L+ P G+++ ++PP I+ +LD + + EA+
Sbjct: 388 KEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKEAL 447
>gnl|CDD|36618 KOG1404, KOG1404, KOG1404, Alanine-glyoxylate aminotransferase AGT2
[Amino acid transport and metabolism].
Length = 442
Score = 226 bits (578), Expect = 8e-60
Identities = 117/427 (27%), Positives = 193/427 (45%), Gaps = 37/427 (8%)
Query: 4 LHSNYPIWHPFVQHFCNPTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMN 63
L P + + I++ EG YL DE + +DA ++ GH HP ++
Sbjct: 15 LQKRRAFLSPGLTSY-YKKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVA 73
Query: 64 AIRSASENYDQIIFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGF 123
A + S Y + P LA L+ P L+ VFF +SGS + E+ALKMA +
Sbjct: 74 AAVKQLKKL-YHTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLY 132
Query: 124 FNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHH------- 176
N I+ + YHG+T+ ++ ++ + ++ + V P
Sbjct: 133 TGNL-----DIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGG 187
Query: 177 -NEEQ------KTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYD 229
NEE+ K L+DL + + +AAF+ E I G GG+ P LK ++ +K
Sbjct: 188 SNEEEASDRYAKELEDLILYDGPETVAAFIAET-IQGVGGIVELPPGYLKAAYKVVRKRG 246
Query: 230 TLLIADEVMTGWGRTGKIFACNHADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSS 289
L IADEV TG+GRTG ++ + PDI+ ++KGI G PL A + + EI D
Sbjct: 247 GLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGI-GNGFPLGAVVTTPEIADVLNQK 305
Query: 290 DKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIERIKNLERMHADRLSLLKSNKKFV- 348
H ++Y NP+ACA LA L++ ++E + E + ++L+ LK +
Sbjct: 306 S-----SHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIG 360
Query: 349 NIRQMGTIVALDFNVQNKGYFFDKNAKLKNFF----REKKILIRPL---GHIMYLMPPYC 401
++R G ++ ++ V +K +E +L+ G++ + PP C
Sbjct: 361 DVRGRGLMLGVEL-VSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLC 419
Query: 402 ITATDLD 408
IT D+D
Sbjct: 420 ITKEDID 426
>gnl|CDD|36615 KOG1401, KOG1401, KOG1401, Acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 433
Score = 224 bits (571), Expect = 5e-59
Identities = 109/422 (25%), Positives = 177/422 (41%), Gaps = 27/422 (6%)
Query: 9 PIWHPFVQHF--CNPTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMNAIR 66
I + I +GS L D + + ID SSW V GH +P + A+
Sbjct: 23 GIVEEKTRIVSTYARYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALA 82
Query: 67 SASENYDQIIFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGFFN- 125
++ +T E E L + + VFF +SG+ + E ALK A F
Sbjct: 83 EQAKKLGHSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGK 142
Query: 126 NNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDD 185
+ + K + E+ YHG T+G++SV+ + ++P+ DV T + N+
Sbjct: 143 KHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEY---NDSTALEKL 199
Query: 186 LEKHCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTG 245
E H +IAA +VEP I GAGG+ P L + LLI DEV TG GR G
Sbjct: 200 FESH--KGEIAAVIVEP-IQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLG 256
Query: 246 KIFACNHADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANP 305
+A + +TPDI ++K + GG LP+ AT +++ + D +H +++ NP
Sbjct: 257 YGWAQEYFGVTPDITTVAKPLGGG-LPIGATGVRDKVAEMISPGDH---LYHGGTFSGNP 312
Query: 306 IACAAALANLQIWEKEPVIERIKNLERMHADRLSLLKSNKKFVNIRQMGTIVALDFNVQN 365
+AC+A + L + ++ + + + L +G + + F +
Sbjct: 313 LACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEG 372
Query: 366 KGYFFDKNAKLKNFFREKKILIRPLGHIM-----YLMPPYCITATDLDHIYNTINEAVDF 420
Y F A RE+ +LI LG + + P Y +T + I +
Sbjct: 373 PVYKFADAA------REQGLLILTLGKGLLEEGVRIAPIYLLTVEHTPEV---IQRLLTI 423
Query: 421 LE 422
LE
Sbjct: 424 LE 425
>gnl|CDD|36616 KOG1402, KOG1402, KOG1402, Ornithine aminotransferase [Amino acid
transport and metabolism].
Length = 427
Score = 202 bits (515), Expect = 1e-52
Identities = 118/416 (28%), Positives = 205/416 (49%), Gaps = 36/416 (8%)
Query: 17 HFCNPTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENY---D 73
H +P K +GS + D + +D +S++ + GH HP I+ A++ ++
Sbjct: 36 HNYHPLPVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSS 95
Query: 74 QIIFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGF-FNNNNMPRN 132
+ +++ E AE + +L G V ++G+ ++E A K+A + + N+P+N
Sbjct: 96 RAFYNDVLGEFAEYVTKLF------GYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKN 149
Query: 133 K--IVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLL-FDVETIPFPHHNEEQKTLDDLEKH 189
K I+ E+ +HG T+G++S+S + + P L V+ +P+ + LE
Sbjct: 150 KAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYGD-------AEALEVA 202
Query: 190 CSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFA 249
+ +AAF+VEP I G G+ P LK+ + KY+ LLIADEV TG RTGK+ A
Sbjct: 203 LKSPNVAAFIVEP-IQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLA 261
Query: 250 CNHADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACA 309
C++ ++ PDI+ L K ++GG P++A L ++I + + H S+Y NP+ CA
Sbjct: 262 CDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIKPGE------HGSTYGGNPLGCA 315
Query: 310 AALANLQIWEKEPVIERIKNLERMHADRLSLLKS--NKKFVNIRQMGTIVALDFNVQNKG 367
A+A L++ +E ++ER L + D+L+ L+ +R G + A+ N
Sbjct: 316 VAIAALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKTS 375
Query: 368 YF--FDKNAKLKNFFREKKILIRPL-GHIMYLMPPYCITATDLDHIYNTINEAVDF 420
+D LK E +L +P G+I+ PP I+ DL I + +
Sbjct: 376 GQDAWDVCLALK----ENGLLAKPTHGNIIRFAPPLVISEEDLREGIEAIEKTIAD 427
>gnl|CDD|30350 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 145 bits (368), Expect = 2e-35
Identities = 104/417 (24%), Positives = 188/417 (45%), Gaps = 40/417 (9%)
Query: 21 PTFKKIIKTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEY 80
P F I + +G+YL D + ++ ID + W + GH HP ++ A++ E + F
Sbjct: 36 PIF--IERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLER--GLSFGA- 90
Query: 81 THEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGFFNNNNMPRNKIVVMEHG 140
E +LA LLI+ P ++ V F +SG+ + A+++A + R+KI+ E
Sbjct: 91 PTELEVELAELLIERVPS-IEKVRFVNSGTEATMSAIRLARAYTG-----RDKIIKFEGC 144
Query: 141 YHGDT------IGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQK 194
YHG + GS + G+ ++ P T+ P+++ E L++ +
Sbjct: 145 YHGHSDSLLVKAGS-GAATLGSPSSPGVPADVAKHTLVLPYNDLEA--LEEAFEE-YGDD 200
Query: 195 IAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHAD 254
IAA +VEP + G G+ P L+ +T+++ LLI DEV+TG+ R A +
Sbjct: 201 IAAVIVEP-VAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVALGGAQGYYG 258
Query: 255 ITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALAN 314
+ PD+ L K I GG LP+ A EI + + + + + NP+A AA LA
Sbjct: 259 VEPDLTTLGK-IIGGGLPIGAFGGRAEIMEQL---APLGPVYQAGTLSGNPLAMAAGLAT 314
Query: 315 L-QIWEKEPVIERIKNL-ERMHADRLSLLKSNKKFVNIRQMGTIVALDFNVQNKGYFFDK 372
L ++ +E V ER+ L ER+ + + + + + ++G++ + F + + D
Sbjct: 315 LEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADA 374
Query: 373 NA----KLKNFFR---EKKILIRPLGHIMYLMPPYCITATDLDHIYNTINEAVDFLE 422
+ FF + + + P + TA + I T+ A + +
Sbjct: 375 KRSDVERFAKFFHHLLNRGVYLAPSQFEAGFLS----TAHTEEDIDRTLEAADEAFK 427
>gnl|CDD|36617 KOG1403, KOG1403, KOG1403, Predicted alanine-glyoxylate
aminotransferase [General function prediction only].
Length = 452
Score = 122 bits (308), Expect = 1e-28
Identities = 102/426 (23%), Positives = 178/426 (41%), Gaps = 46/426 (10%)
Query: 25 KIIKTEGSYLIDENHDKIIDAISSWWVITH-GHRHPIIMNAIRSASENYDQIIFSEYTHE 83
KI++ +G Y+ DE + +D I++ + H GH HP ++ A + + H+
Sbjct: 32 KIVRAQGQYMFDEEGTRYLDCINN---VAHVGHCHPEVVRAGAKQMATIS--TNNRFLHD 86
Query: 84 PAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGFFNNNNMPRNKIVVMEHGYHG 143
Q AR L P L FF +SGS + ++AL++A F ++ ++H YHG
Sbjct: 87 ELVQCARTLTSTLP-ELSVCFFVNSGSEANDLALRLARNF-----TKHQDVITLDHAYHG 140
Query: 144 DTIGSMSVSMRGAFNNS---YEPLLFDVETIP-----------FPHHNEEQKTLDDLEK- 188
M VS FN +P V P +P + D +++
Sbjct: 141 HLQSVMEVSPY-KFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEI 199
Query: 189 ----HCSTQKIAAFLVEPLILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRT 244
Q +AAF+ E L G + Y + + + IADEV G+GR
Sbjct: 200 CQDQLAKGQGVAAFIAESLQSCGGQIIPPAGY-FQAVADAVRSAGGVCIADEVQVGFGRV 258
Query: 245 GKIF-ACNHADITPDILCLSKGITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTA 303
G + A + PDI+ + K + G P+AA ++EI + + + F ++Y
Sbjct: 259 GSHYWAFQTYNFIPDIVTMGKPM-GNGHPVAAVATTKEIAQA-FHATGVEYF---NTYGG 313
Query: 304 NPIACAAALANLQIWEKEPVIERIKNLERMHADRLSLLKSNKKFV-NIRQMGTIVALDFN 362
NP++CA LA +++ E E + E + + L LK + + ++R +G + +D
Sbjct: 314 NPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLV 373
Query: 363 VQNKGYFFDKNAKLKNFFREKK---ILIR---PLGHIMYLMPPYCITATDLDHIYNTINE 416
K D R K+ +L+ P +I+ + PP C + D ++E
Sbjct: 374 KDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDE 433
Query: 417 AVDFLE 422
+ +E
Sbjct: 434 ILTVME 439
>gnl|CDD|36619 KOG1405, KOG1405, KOG1405, 4-aminobutyrate aminotransferase [Amino
acid transport and metabolism].
Length = 484
Score = 101 bits (252), Expect = 4e-22
Identities = 89/386 (23%), Positives = 150/386 (38%), Gaps = 72/386 (18%)
Query: 28 KTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPA-- 85
K+ G+YL+D + ++++D S + G+ +P ++ A + Q + + PA
Sbjct: 64 KSIGNYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQQ-----PQNA-TMLVNRPALG 117
Query: 86 --------EQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGFFNNNN--------- 128
E+L + L+ IAP G + V GS + E A K A ++
Sbjct: 118 NFPPKDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWYRAKERGQAGFSAE 177
Query: 129 ------------MPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFDVETIPFPH- 175
P ++ + +HG T GS+S + + P FD PFP
Sbjct: 178 ELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPA-FDWPIAPFPRY 236
Query: 176 ---------HN--EEQKTLDDLEK-----HCSTQKIAAFLVEPLILGAGGMQTYRPYILK 219
N E+Q L ++E + +AA +VEP I GG P +
Sbjct: 237 KYPLDENVAENKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEP-IQSEGGDNHASPDFFR 295
Query: 220 EFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADIT--PDILCLSKGITGGALPLAATL 277
+ ITKK+ I DEV TG G TGK +A H ++ PD++ SK G
Sbjct: 296 KLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTGGF------ 349
Query: 278 CSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIERIKNLERMHADR 337
D + + +++ +P +Q ++E ++ + ++ +
Sbjct: 350 ----FHDEEFRP--NEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKG 403
Query: 338 LSLL--KSNKKFVNIRQMGTIVALDF 361
L L K K N+R GT +A D
Sbjct: 404 LLELQAKYPGKINNLRGRGTFIAWDC 429
>gnl|CDD|30505 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 39.9 bits (93), Expect = 0.001
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 25/136 (18%)
Query: 218 LKEFMRITKKYDTLLIADEV-MTG-WGRTGKIFACNHADITP---DIL--CLSK--GITG 268
L E + + +KY LL DE G G G+ H + P DI+ L K G +G
Sbjct: 190 LPELVELAEKYGALLYVDEAHAVGVLGPNGRGL-AEHFGLEPEEVDIIVGTLGKALGSSG 248
Query: 269 GALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTAN--PIACAAALANLQIWEKEPVIER 326
G + +A L D + ++ P AAALA L+I E+ P ER
Sbjct: 249 GYIAGSAALI-----------DYLRNRARPFIFSTALPPAVAAAALAALRILEEGP--ER 295
Query: 327 IKNLERMHADRLSLLK 342
+ L+ + A SLLK
Sbjct: 296 RERLQELAAFFRSLLK 311
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein..
Length = 350
Score = 36.6 bits (85), Expect = 0.012
Identities = 57/302 (18%), Positives = 97/302 (32%), Gaps = 47/302 (15%)
Query: 108 SGSTSIEVALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFD 167
+G+ AL + L N P ++++V + Y G + + GA +
Sbjct: 66 NGAQE---ALSLLLRALLN---PGDEVLVPDPTYPG---YEAAARLAGA----------E 106
Query: 168 VETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLVEPL--ILGAGGMQTYRPYILKEFMRIT 225
V +P L+ LE T K + GA L+E +
Sbjct: 107 VVPVPLDEEGGFLLDLELLEA-AKTPKTKLLYLNNPNNPTGA----VLSEEELEELAELA 161
Query: 226 KKYDTLLIADEVMTGWGRTGKIFACNHADITPD--ILC--LSK--GITGGALPLAATLCS 279
KK+ L+I+DE G+ + I+ SK G+ G L + +
Sbjct: 162 KKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPG--LRIGYLIAP 219
Query: 280 EEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIERIKNLERMHADRLS 339
E L T S+ + A AAAL + + + E + R L
Sbjct: 220 PEELLERLKKLLPYTTSGPSTLSQ--AAAAAALDDGEEH----LEELRERYRRRRDALLE 273
Query: 340 LLKSNKKFVNIRQMGTIVA-LDFNVQNKGYFFDKNAKLKNFFREKKILIRPLGHIMYLMP 398
LK V ++ G LD + F ++ E +++RP
Sbjct: 274 ALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLER------LLLEAGVVVRPGSAFGEGGE 327
Query: 399 PY 400
+
Sbjct: 328 GF 329
>gnl|CDD|143923 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 351
Score = 35.7 bits (83), Expect = 0.021
Identities = 39/225 (17%), Positives = 72/225 (32%), Gaps = 52/225 (23%)
Query: 218 LKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPD---ILC--LSK--GITGGA 270
L++ + + K+++ LL+ DE G+ A + ++ SK G+ G
Sbjct: 158 LEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLAEGPNLLVVGSFSKAFGLAG-- 215
Query: 271 LPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIERIKNL 330
+ L + + S L K F+SS++ A AAAL + L
Sbjct: 216 WRVGYILGNAAVI-SQL--RKLARPFYSSTHL--QAAAAAAL--------SDPLLVASEL 262
Query: 331 ERMHADRLSLLKSNKKFVNIRQMGTIVALDFNV--QNKGYF---FDKNAKLKNFFR---- 381
E M R + + + + A +V G+F K +
Sbjct: 263 EEM---RQRIKERRDYLRDG-----LEAAGLSVLPSQAGFFLLTGLDPETAKELAQVLLE 314
Query: 382 EKKILIRPLGHIMYLMPPYC-----ITATDLDHIYNTINEAVDFL 421
E + + P P IT + E ++ +
Sbjct: 315 EVGVYVTPGS------SPGVPGWLRITVAGGTE--EELEELLEAI 351
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V)..
Length = 170
Score = 35.1 bits (81), Expect = 0.041
Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 28/187 (14%)
Query: 84 PAEQLARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGFFNNNNMPRNKIVVMEHGYHG 143
E+L L ++ G F SG+ + E AL L P ++++V +G+
Sbjct: 1 KLEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL-------GPGDEVIVDANGHG- 52
Query: 144 DTIGSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLVEPL 203
S A +P+ V+ + + L++L+ + A +V
Sbjct: 53 ------SRYWVAAELAGAKPVPVPVD--DAGYGGLDVAILEELKA----KPNVALIVITP 100
Query: 204 ILGAGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDIL--C 261
+GG+ LKE +I K+Y LL+ D G G + + D++
Sbjct: 101 NTTSGGVL----VPLKEIRKIAKEYGILLLVDAASAG-GASPAPGVLIP-EGGADVVTFS 154
Query: 262 LSKGITG 268
L K + G
Sbjct: 155 LHKNLGG 161
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life..
Length = 349
Score = 33.7 bits (78), Expect = 0.10
Identities = 50/228 (21%), Positives = 86/228 (37%), Gaps = 58/228 (25%)
Query: 218 LKEFMRITKKYDTLLIADEV----MTGW-GRTGKIFACNHADITPDIL--CLSK--GITG 268
L E + + KKY +L DE + G GR + F D+ DI+ L K G G
Sbjct: 151 LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDV--DIIMGTLGKAFGAVG 208
Query: 269 GALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIERIK 328
G S+E+ D +L S + F S+S P AAALA L++ + P
Sbjct: 209 G-----YIAGSKELID-YLRS-YARGFIFSTS--LPPAVAAAALAALEVLQGGP------ 253
Query: 329 NLERMHADRLSLLKSNKKFVN--IRQMGTIVALDFN--VQNK-GYFFDKNAKLKNFFREK 383
+R L+ N +++ ++++G V + + G K + E+
Sbjct: 254 -------ERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDPAKAVAFSDALLER 306
Query: 384 KILIRPLGHIMYLMPP----------YCITAT----DLDHIYNTINEA 417
I ++ + P ++A D+D + + E
Sbjct: 307 GIYVQAIR------YPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348
>gnl|CDD|30785 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 30.7 bits (69), Expect = 0.84
Identities = 47/195 (24%), Positives = 72/195 (36%), Gaps = 30/195 (15%)
Query: 160 SYEPL--LFDVETIPFPHHNEE---QKTLDDLEKHCSTQKIAAFLV----EPLILGAGGM 210
SYE L + +P P EE + L+DLE T K A ++ P GA
Sbjct: 125 SYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAA-ITPKTKAIILNSPNNPT--GA--- 178
Query: 211 QTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIF-----ACNHADITPDILCLSK- 264
Y LK + + +++D ++I+DE+ G D T I SK
Sbjct: 179 -VYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKT 237
Query: 265 -GITGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPV 323
G+TG + E I + + A A AA+A L + + V
Sbjct: 238 YGMTGWRIGWVVGPPEELI-------AALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEV 290
Query: 324 IERIKNLERMHADRL 338
+E ++ R D L
Sbjct: 291 VEEMREEYRERRDLL 305
>gnl|CDD|36299 KOG1083, KOG1083, KOG1083, Putative transcription factor
ASH1/LIN-59 [Transcription].
Length = 1306
Score = 29.7 bits (66), Expect = 1.5
Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 15/164 (9%)
Query: 55 GHRHPIIMNAIRSASENYDQIIFSEYTHEPAEQLARLLIKIAPLGLQYVFFSDSGSTSIE 114
HRH + + YT + L ++ + + + T +
Sbjct: 677 KHRHTFYHEGPYPSIFRIN--FNHYYTVPYIQYDPLLYLRRTKSKKKRGRPAKTVDTMTK 734
Query: 115 VALKMAL-------GFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFNNSYEPLLFD 167
V +L G++++ MP + +M GY+GD + S F
Sbjct: 735 VPFLHSLSYPISSGGYYSSYGMPYSPSPMMNLGYYGDYPPPLYPSHTLG-----AASPFM 789
Query: 168 VETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLVEPLILGAGGMQ 211
T+P P + ++ K L P+ +G G Q
Sbjct: 790 RPTVPPPPFHTNP-HIEMSGAAKHKAKHGVSLQGPVSMGLGSSQ 832
>gnl|CDD|30502 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 29.5 bits (66), Expect = 1.9
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 21/94 (22%)
Query: 99 GLQYVFFSD-------SGSTSIEVALKMALGFFNNNNMPRNKIV----VMEHGYHGDTIG 147
GL V + S S ++EVA+ +AL N + + ++ V E+ + G G
Sbjct: 115 GLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCG 174
Query: 148 SMS--VSMRGAFNNSYEPLLFD-----VETIPFP 174
M S G +++ LL D E +PFP
Sbjct: 175 IMDQLASAFGKKDHA---LLLDCRTLEYEPVPFP 205
>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
family. This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major groups in this CD correspond to
alanine-glyoxylate aminotransferase (AGAT),
serine-glyoxylate aminotransferase (SGAT), and
3-hydroxykynurenine transaminase (HKT). AGAT is a
homodimeric protein, which catalyses the transamination
of glyoxylate to glycine, and SGAT converts serine and
glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
the PLP-dependent transamination of 3-hydroxykynurenine,
a potentially toxic metabolite of the kynurenine
pathway..
Length = 356
Score = 29.2 bits (66), Expect = 2.3
Identities = 50/225 (22%), Positives = 78/225 (34%), Gaps = 50/225 (22%)
Query: 99 GLQYVFFSDSG-----STSIEVALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSM 153
GL+YVF +++G S S A++ AL +N P +K++V +G GD M+
Sbjct: 40 GLRYVFQTENGLTFLLSGSGTGAMEAAL---SNLLEPGDKVLVGVNGVFGDRWADMAER- 95
Query: 154 RGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLVEPLILGAGGMQTY 213
GA DV+ + P E + +++ + I A + G +
Sbjct: 96 YGA----------DVDVVEKPW--GEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP- 142
Query: 214 RPYILKEFMRITKKYDTLLIADEV---------MTGWGRTGKIFACNHADITPDILCLSK 264
L+ + KK+D LLI D V M WG + K
Sbjct: 143 ----LEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWG------------VDVAYTGSQK 186
Query: 265 GITGGALP-LAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIAC 308
+ GA P L SE + K K F+
Sbjct: 187 AL--GAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGE 229
>gnl|CDD|32037 COG1852, COG1852, Uncharacterized conserved protein [Function
unknown].
Length = 209
Score = 29.1 bits (65), Expect = 2.5
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 323 VIERIKNLERMHADRLSLLKSNKKFVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNFFRE 382
+I RI +++ L + + I+ + ++ D + F ++KN E
Sbjct: 25 LISRISLKKKLIFPGFDLFTLDLFYAPIKTILFKLSED-----EDLFDRIGIEVKNKAYE 79
Query: 383 KKILIRPLGHIMYLMPPYCITATD 406
K P+G + L+ P+C+
Sbjct: 80 KDFKKIPVGKRLLLL-PHCLRNPK 102
>gnl|CDD|109650 pfam00602, Flu_PB1, Influenza RNA-dependent RNA polymerase subunit
PB1. Two GTP binding sites exist in this protein.
Length = 740
Score = 28.3 bits (63), Expect = 4.2
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 211 QTYRPYILKEFMRITKKYDTLLIAD 235
T R LKEF+R T D LLIAD
Sbjct: 569 GTRRMKELKEFIRETCGKDGLLIAD 593
>gnl|CDD|177096 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 27.8 bits (62), Expect = 5.3
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 338 LSLLKSNKKFVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKKILIR 388
L S K N ++ + NV+N G DK K+ ++K LI+
Sbjct: 1743 LICFNSKNK--NAVDRNSVFCNEKNVKNCGQVLDKK---KDLDKDKNKLIK 1788
>gnl|CDD|176996 CHL00056, psaA, photosystem I P700 chlorophyll a apoprotein A1.
Length = 750
Score = 27.4 bits (61), Expect = 6.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 392 HIMYLMPPYCITATD 406
H MY MPPY ATD
Sbjct: 366 HHMYSMPPYPYLATD 380
>gnl|CDD|143938 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 27.5 bits (62), Expect = 7.8
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 307 ACAAALANLQIWEKEPVIERIKNLERM------HADRLSLL 341
A AAA A + W K P ER L + D L+ L
Sbjct: 34 AVAAARAAFKAWAKTPPSERAAILLKAADLLEERRDELAEL 74
>gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb
receptors, which are metabotropic transmembrane
receptors for gamma-aminobutyric acid (GABA).
Ligand-binding domain of GABAb receptors, which are
metabotropic transmembrane receptors for
gamma-aminobutyric acid (GABA). GABA is the major
inhibitory neurotransmitter in the mammalian CNS and,
like glutamate and other transmitters, acts via both
ligand gated ion channels (GABAa receptors) and
G-protein coupled receptors (GABAb). GABAa receptors are
members of the ionotropic receptor superfamily which
includes alpha-adrenergic and glycine receptors. The
GABAb receptor is a member of a receptor superfamily
which includes the mGlu receptors. The GABAb receptor is
coupled to G alpha_i proteins, and activation causes a
decrease in calcium, an increase in potassium membrane
conductance, and inhibition of cAMP formation. The
response is thus inhibitory and leads to
hyperpolarization and decreased neurotransmitter
release, for example.
Length = 350
Score = 27.2 bits (61), Expect = 7.9
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 103 VFFSDSGSTS---IEVALKMALGFFNNNNMPRNKIVVMEHGYHGDTIGSMSVSMRGAFN 158
F SGS A++MAL N +N ++ H D+ + A +
Sbjct: 4 AIFDLSGSWIGKAALPAIEMALEDVNADNSILPGYRLVLH--VRDSKCDPVQAASAALD 60
>gnl|CDD|146957 pfam04568, IATP, Mitochondrial ATPase inhibitor, IATP. ATP
synthase inhibitor prevents the enzyme from switching to
ATP hydrolysis during collapse of the electrochemical
gradient, for example during oxygen deprivation ATP
synthase inhibitor forms a one to one complex with the
F1 ATPase, possibly by binding at the alpha-beta
interface. It is thought to inhibit ATP synthesis by
preventing the release of ATP. The minimum inhibitory
region for bovine inhibitor is from residues 39 to 72.
The inhibitor has two oligomeric states, dimer (the
active state) and tetramer. At low pH, the inhibitor
forms a dimer via antiparallel coiled coil interactions
between the C terminal regions of two monomers. At high
pH, the inhibitor forms tetramers and higher oligomers
by coiled coil interactions involving the N terminus and
inhibitory region, thus preventing the inhibitory
activity.
Length = 90
Score = 27.3 bits (61), Expect = 7.9
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 175 HHNEEQKTLDDLEKH 189
E +K +++LEKH
Sbjct: 74 KLEEHKKEIEELEKH 88
>gnl|CDD|144028 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain. This
family includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 67
Score = 27.5 bits (62), Expect = 7.9
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 108 SGSTSIEVALKMALGFFNNNNMPRNKIVVMEH---GYHGDTIGSM-SVSMRG 155
S ++ VAL +AL + + ++ + G G G + S+ G
Sbjct: 15 GSSAALAVALLLALNELFGLPLSKEELARLALEAEGAIGVNSGDDVAASVYG 66
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,363,673
Number of extensions: 291351
Number of successful extensions: 811
Number of sequences better than 10.0: 1
Number of HSP's gapped: 749
Number of HSP's successfully gapped: 31
Length of query: 423
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 327
Effective length of database: 4,189,273
Effective search space: 1369892271
Effective search space used: 1369892271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)